ID:

dmo_1027

 Coordinate:

scaffold_6496:7756578-7756728 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.0 -12.4 -12.4

Flybase annnotation

CDS [Dmoj\GI20208-cds]; exon [dmoj_GLEANR_5083:3]; intron [Dmoj\GI20208-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACTTTGCTAAACAATCGTGTGTAGTTAATTTTAAGAGCTATGGACTTTGCCCAGCATAACTGTAGCTGTAACTGTAAATATACATACACTATGTGTGAGAATGTAAGCGGAGACAACAGCAGCAGCAGCAGCAGCAGCTCAGTGTCTAACTGAAGTTCTATGCCCTAATCAACCCGTTTCTTTTGCCTGACATTTTTACAGTATGCGCTTTGCCCTCCGGCAGCAGCAGCAGCAGCGATCATGTCACAAAA
********************************************************************************************************...((((((((..(((.((.((....)).)).)))...)))))..)))............*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 M060
embryo
............................................................................................................................................................................................................GCGCTTTGCCCTCCGGCAGC........................... 20 0 1 2.00 2 2 0 0 0
.............................................................................................................................................................................................................................AGCAGCAGCAGCAGCGATCATGT....... 23 0 1 2.00 2 2 0 0 0
ACTTTGCTAAACAATCGTGTGTA.................................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0
.......................GTTAATTTTAAGAGCTATGGAC.............................................................................................................................................................................................................. 22 0 1 2.00 2 0 2 0 0
.........................TAATTTTAAGAGCTATGGACTTT........................................................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0
.............................................................................................................................................................................................................................AGCAGCAGCAGCAGCGATCATGTCAC.... 26 0 1 1.00 1 1 0 0 0
...........................................................................................................................................CAGTGTCTAACTGAAGTTCTATGCC....................................................................................... 25 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................GCTTTGCCCTCCGGCAGC........................... 18 0 1 1.00 1 1 0 0 0
.............................................TTTGCCCAGCATAACTGTAGCT........................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0
........................................................................................................AAGCGGAGACAACAGCAGCAGCA............................................................................................................................ 23 0 1 1.00 1 1 0 0 0
..........................AATTTTAAGAGCTATGGACTT............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................CCTCCGGCAGCAGCAGCAGCAGC............... 23 0 1 1.00 1 1 0 0 0
.........................................................................GTAAATATACATACACTAT............................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................GTATGCGCTTTGCCCTCCGGCAGCAGC........................ 27 0 1 1.00 1 1 0 0 0
..............................................................................................GTGAGAATGTAAGCGGAGA.......................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................GCTTTGCCCTCCGGCAGCAGC........................ 21 0 1 1.00 1 1 0 0 0
............................................................................AATATACATACACTATGTGTGAGAATGT................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0
.................................................................................................................................................CTAACTGAAGTTCTATGCCCTAATATA............................................................................... 27 2 1 1.00 1 0 1 0 0
......................AGTTAATTTTAAGAGCTATGGACTTTGCC........................................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0
.......................................................ATAACTGTAGCTGTAACTGTAA.............................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0
...........................................................................................................................................CAGTGTCTAACTGAAGTTCTATGC........................................................................................ 24 0 1 1.00 1 1 0 0 0
..............................................................................................GTGAGAATGTAATCGGAGACAACAGCA.................................................................................................................................. 27 1 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................................................AGCAGCAGCGATCATGTCACAAA. 23 0 1 1.00 1 1 0 0 0
.......................................................................................................TAAGCGGAGACAACAGCAGCAGCA............................................................................................................................ 24 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................................AGCAGCAGCAGCGATCATGTCACA... 24 0 1 1.00 1 1 0 0 0
..........................................GACTTTGCCCATCATAACTGTAGCT........................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0
................................................................................................GAGAATGTAAGCGGAGACAACAGC................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
...............................................................................................................................GCAGCAGCAGCTCAGTGTCTAACT.................................................................................................... 24 0 1 1.00 1 1 0 0 0
...............................................TGCCCAGCATAACTGTAGCTGTAACT.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................TTTACAGTATGCGCTTTGC...................................... 19 0 1 1.00 1 0 1 0 0
...............................................TGCCCAGCATAACTGTAGCTGTA..................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
..............................................................................................GTGAGAATGTAAGCGGAGAC......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
........................................................................................................AAGCGGAGACAACAGCAGCAGCAGCAGC....................................................................................................................... 28 0 1 1.00 1 0 1 0 0
.......................................................................................................................................................................................................................TCCGGCAGCAGCAGCAGCAGCGAT............ 24 0 1 1.00 1 1 0 0 0
.......................................................ATAACTGTAGCTGTAACTGTA............................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
............................................................................................GTGTGAGAATGTAAGCGGA............................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
.......................................................ATAACTGTAGCTGTAACTGT................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0
......................................................................................................................................................................................TTGCCTGACATTTTTACAGTATGCGC........................................... 26 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................TGCGCTTTGCCCTCCGGCA............................. 19 0 1 1.00 1 1 0 0 0
......................................................CATAACTGTAGCTGTAACTGTA............................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
........................................................................................CTATGTGTGAGAATGTAAGCG.............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
.............ATCGTGTGTAGTTAATTTTAAGAG...................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
...................................AGCTATGGACTTTGCCCAGC.................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.....................................CTATGGACTTTGCCCAGCATAACTGTA........................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
..........................................................................................................................................................................................................ATGCGCTTTGCCCTCCGGCAGCAGC........................ 25 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................AGCAGCAGCAGCAGCGATCATGTCA..... 25 0 1 1.00 1 1 0 0 0
................................................GCCCAGCATAACTGTAGCTGTAACTGTA............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................GTATGCGCTTTGCCCTCCGGC.............................. 21 0 1 1.00 1 1 0 0 0
...............CGTGTGTAGTTTATTTTAAGA....................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................GTTCTATGCCCTAATCAACCC............................................................................ 21 0 1 1.00 1 1 0 0 0
..............................................................................................GTGAGAATGTAAGCGGAGACAA....................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................TTCTTTTGCCTGACATTTTTACAGT................................................. 25 0 1 1.00 1 0 1 0 0
..................................................CCAGCATAACTGTAGCTGTAACT.................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
..........................................................ACTGTAGCTGTAACTGTAAATATAC........................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0
......................................................................................CACTATGTGTGAGAATGTAAGCGGAGA.......................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................................AGCAGCAGCGATCATGTCAC.... 20 0 1 1.00 1 1 0 0 0
.....................................................................................................TGTAAGCGGAGACAACAGCAGC................................................................................................................................ 22 0 1 1.00 1 1 0 0 0
..............................................................................................GTGAGAATGTAAGCGGAGACAACAGC................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
......................................................................................................GTAAGCGGAGACAACAGCAGCA............................................................................................................................... 22 0 1 1.00 1 0 1 0 0
...................................................................................ATACACTATGTGTGAGAATGTAAGCGGA............................................................................................................................................ 28 0 1 1.00 1 1 0 0 0
..............................................................................................GTGAGAATGTAAGCGGAGACAACAGCA.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
......................................................................................................GTAAGCGGAGACAACAGCAGCAGC............................................................................................................................. 24 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................GTTCTATGCCCTAATCAACCCGTTT........................................................................ 25 0 1 1.00 1 1 0 0 0
.....................................................................................................................AGCAGCAGCAGCAGCAGCAGCTCAGTGT.......................................................................................................... 28 0 1 1.00 1 1 0 0 0
.......................................................ATAACTGTAGCTGTAACTGTAAAT............................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................TTCTTTTGCCTGACATTTTTACA................................................... 23 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................ATTTTTACAGTATGCGCTTT........................................ 20 0 1 1.00 1 0 1 0 0
...............CGTGTGTAGTTAATTTTAAGA....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.........................................................................................................................GCAGCAGCAGCAGCAGCTCAGT............................................................................................................ 22 0 2 0.50 1 1 0 0 0
...........................................................................................TTTGTGCGATTGTAAGCGGAG........................................................................................................................................... 21 3 4 0.25 1 0 0 1 0
...................................................................................................................................CAGCTGCACCGTGTCTAACT.................................................................................................... 20 3 10 0.20 2 0 2 0 0
.............................................................................................................................................................................................................................AGCAGCAGCAGCAGCGATC........... 19 0 5 0.20 1 1 0 0 0
............AATCGGGTGTAGCTACTTTT........................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0
....................................................................................................................................AGCTGCACCGTGTCTAACT.................................................................................................... 19 3 20 0.10 2 1 1 0 0
..............................................................................................................................................................................................................................GCAGCAGCAGCAGGGATCCT......... 20 2 15 0.07 1 0 1 0 0
........................................................................................................................................................................................................................CCGGCAGCAGCAGCAGCA................. 18 0 20 0.05 1 0 0 0 1
...............................................................................................................GACAACAGCAGCAGCAGCAGCAGCAGC................................................................................................................. 27 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TGAAACGATTTGTTAGCACACATCAATTAAAATTCTCGATACCTGAAACGGGTCGTATTGACATCGACATTGACATTTATATGTATGTGATACACACTCTTACATTCGCCTCTGTTGTCGTCGTCGTCGTCGTCGTCGAGTCACAGATTGACTTCAAGATACGGGATTAGTTGGGCAAAGAAAACGGACTGTAAAAATGTCATACGCGAAACGGGAGGCCGTCGTCGTCGTCGTCGCTAGTACAGTGTTTT
***************************************************************************************...((((((((..(((.((.((....)).)).)))...)))))..)))............******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V056
head
 M046
female body
...................................................................................................................................GTCGACGTGGCACAGATTGA.................................................................................................... 20 3 10 0.50 5 1 3 1
....................................................................................................................................TCGACGTGTCACAGATTGAGT.................................................................................................. 21 3 4 0.25 1 1 0 0
....................................................................................................................................TCGACGTGGCACAGATTGA.................................................................................................... 19 3 20 0.20 4 0 0 4
..................................................................................................................................GGTCGTCGTGGCACAGATTG..................................................................................................... 20 3 5 0.20 1 1 0 0
...................................................................................................................................GTCGCCGTGGCACAGATTG..................................................................................................... 19 3 14 0.07 1 0 1 0
....................................................................................................TTCAGTCTCCTCTGTTGTCG................................................................................................................................... 20 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:7756528-7756778 + dmo_1027 ACTTTGCTAAA----CAATCGTGTGTAGTTAATTTTAAGAGCTATGGACTTTGCCCAGCA---TAACTGTAGCTGTAACTGTAAATATACATACACTATGTGTGAGAA-------TGTAAGCGGAGACAACAGCAGCAGCAGCAGCAGCAGCTCAGTGTCTAACTGAAG------------------------------------TTCTATGCC-CTAATC-AACCCGTTTCTTTTGC-CTG--ACATTTTTACAGTATGCGCTTTGCCCTCCGGCAGC---AGCAGCAGCAGC---GATCATGTCACAA-----------AA----------------------------
droVir3 scaffold_12875:16027254-16027464 - dvi_7213 GCTTTGTTAAAAGTACAATTGTGTGTAGTTAATTTTAAGAT--TCGGACTCTGC--ATCATTAAAACTGCCA------ATGCA---------------TATGTGAGA-------------------------------------------------------------CACATTAGACCAGGCTCCATCGTTGGAACCCCTTTGATTTGATGCA-CTAATCTG---AAACTCTCTTCC-CTG--CCAA--TTACAGTGTGCGCTTTGCCCTCAAGCAGC---AGCAGTAGCACG---GATCATGCCACAA-----------AA----------------------------
droGri2 scaffold_15245:12831766-12831995 - T--TAGATACA-----AATCGTGTTCAGTTCATTTTAAGAA--TC-TACTTTAT--AGCC---CAACTGTAA------ATACT---------------GATGTCAGAACTGTAGTTGCAAGTAGAG---------------------CTAGC------------TAGTCTTATTTGCCTAGGATCCATT-TTGGAGC--CTTTGAATTATTAAAGCTAATC-A---CATTTCTTTTCCCCTG--ACAA-TTTGCAGTGTGCGCTTTACCTTCAAGCAGCAACAGC---AGCAGCACTGACCACGCCACCC-----------AA----------------------------
droWil2 scf2_1100000004822:2682236-2682312 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTGTACTTTGCAACTA-TTTTCAGTATCAATTTTGCCATCTAGTAGC---AGCAGCAGCAGC---GATAATCGTGTAG-----------CC----------------------------
dp5 XL_group1e:7593614-7593686 - C-------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC---AGCAGCAGCAGC---AGCAGCGCTGCGACAGTTTCACTCGAACCACATGCCTTGTGATTCTTCTCTTTT
droPer2 scaffold_13:2148999-2149038 - G---------------------------------------------------------------------------------------------------------AA-------CATCGACAGCAACAACAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCAGCAGCAGC------------------------------------------------
droAna3 scaffold_13334:922826-922857 + A-------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------ACAGC---AGCAGCAACAGC---AGCAGCATCACAG-----------------------------------------
droBip1 scf7180000395150:3454-3482 - G---------------------------------------------------------------------------------------------------------------------------ACGCAGCAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------C---AGCCGCAGCAGCAGC------------------------------------------------
droSim2 2r:14744771-14744801 - C-------------------------------------------------------------------------------------------------------------------------AGAAACAACAACAG----------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCAGCAACAAC------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACTTTGCTAAA----CAATCGTGTGTAGTTAATTTTAAGAGCTATGGACTTTGCCCAGCA---TAACTGTAGCTGTAACTGTAAATATACATACACTATGTGTGAGAA-------TGTAAGCGGAGACAACAGCAGCAGCAGCAGCAGCAGCTCAGTGTCTAACTGAAG------------------------------------TTCTATGCC-CTAATC-AACCCGTTTCTTTTGC-CTG--ACATTTTTACAGTATGCGCTTTGCCCTCCGGCAGC---AGCAGCAGCAGC---GATCATGTCACAA-----------AA----------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................GCGCTTTGCCCTCCGGCAGC---.....................................................................2012.002200000
....................................................................................................................................................................................................................................................................................AGC---AGCAGCAGCAGC---GATCATGT..............................................2312.002200000
ACTTTGCTAAA----CAATCGTGTGTA....................................................................................................................................................................................................................................................................................................................................2312.002200000
...........................GTTAATTTTAAGAGCTATGGAC..............................................................................................................................................................................................................................................................................................................2212.002000002
.............................TAATTTTAAGAGCTATGGACTTT...........................................................................................................................................................................................................................................................................................................2312.002100001
....................................................................................................................................................................................................................................................................................AGC---AGCAGCAGCAGC---GATCATGTCAC...........................................2611.001100000
.........................................................................................................................................................CAGTGTCTAACTGAAG------------------------------------TTCTATGCC-........................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................................................GCTTTGCCCTCCGGCAGC---.....................................................................1811.001100000
.................................................TTTGCCCAGCA---TAACTGTAGCT.....................................................................................................................................................................................................................................................................................2211.001100000
......................................................................................................................AAGCGGAGACAACAGCAGCAGCA..................................................................................................................................................................................................................2311.001100000
..............................AATTTTAAGAGCTATGGACTT............................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................CCTCCGGCAGC---AGCAGCAGCAGC---......................................................2311.001100000
................................................................................GTAAATATACATACACTAT............................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................GTATGCGCTTTGCCCTCCGGCAGC---AGC..................................................................2711.001100000
.....................................................................................................GTGAGAA-------TGTAAGCGGAGA................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................GCTTTGCCCTCCGGCAGC---AGC..................................................................2111.001100000
...................................................................................AATATACATACACTATGTGTGAGAA-------TGT.........................................................................................................................................................................................................................................2811.001000001
..........................AGTTAATTTTAAGAGCTATGGACTTTGCC........................................................................................................................................................................................................................................................................................................2911.001000001
...........................................................A---TAACTGTAGCTGTAACTGTAA...........................................................................................................................................................................................................................................................................2211.001000001
.........................................................................................................................................................CAGTGTCTAACTGAAG------------------------------------TTCTATGC..........................................................................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................AGCAGCAGC---GATCATGTCACAA-----------A.............................2311.001100000
.....................................................................................................................TAAGCGGAGACAACAGCAGCAGCA..................................................................................................................................................................................................................2411.001000001
..........................................................................................................................................................................................................................................................................................AGCAGCAGCAGC---GATCATGTCACA..........................................2411.001100000
.......................................................................................................GAGAA-------TGTAAGCGGAGACAACAGC.........................................................................................................................................................................................................................2411.001000001
.............................................................................................................................................GCAGCAGCAGCTCAGTGTCTAACT..........................................................................................................................................................................................2411.001100000
...................................................TGCCCAGCA---TAACTGTAGCTGTAACT...............................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................TTTACAGTATGCGCTTTGC...................................................................................1911.001000001
...................................................TGCCCAGCA---TAACTGTAGCTGTA..................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................GTGAGAA-------TGTAAGCGGAGAC...............................................................................................................................................................................................................................2011.001100000
......................................................................................................................AAGCGGAGACAACAGCAGCAGCAGCAGC.............................................................................................................................................................................................................2811.001000001
..............................................................................................................................................................................................................................................................................TCCGGCAGC---AGCAGCAGCAGC---GAT...................................................2411.001100000
...........................................................A---TAACTGTAGCTGTAACTGTA............................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................GTGTGAGAA-------TGTAAGCGGA..................................................................................................................................................................................................................................1911.001100000
...........................................................A---TAACTGTAGCTGTAACTGT.............................................................................................................................................................................................................................................................................2011.001000001
..........................................................................................................................................................................................................................................TTGC-CTG--ACATTTTTACAGTATGCGC........................................................................................2611.001100000
..................................................................................................................................................................................................................................................................TGCGCTTTGCCCTCCGGCA..........................................................................1911.001100000
..........................................................CA---TAACTGTAGCTGTAACTGTA............................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................CTATGTGTGAGAA-------TGTAAGCG....................................................................................................................................................................................................................................2111.001100000
.................ATCGTGTGTAGTTAATTTTAAGAG......................................................................................................................................................................................................................................................................................................................2411.001100000
.......................................AGCTATGGACTTTGCCCAGC....................................................................................................................................................................................................................................................................................................2011.001100000
.........................................CTATGGACTTTGCCCAGCA---TAACTGTA........................................................................................................................................................................................................................................................................................2711.001000001
.................................................................................................................................................................................................................................................................ATGCGCTTTGCCCTCCGGCAGC---AGC..................................................................2511.001100000
....................................................................................................................................................................................................................................................................................AGC---AGCAGCAGCAGC---GATCATGTCA............................................2511.001100000
....................................................GCCCAGCA---TAACTGTAGCTGTAACTGTA............................................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................GTATGCGCTTTGCCCTCCGGC...........................................................................2111.001100000
........................................................................................................................................................................G------------------------------------TTCTATGCC-CTAATC-AACCC............................................................................................................................2111.001100000
.....................................................................................................GTGAGAA-------TGTAAGCGGAGACAA.............................................................................................................................................................................................................................2211.001000001
.....................................................................................................................................................................................................................................TTCTTTTGC-CTG--ACATTTTTACAGT..............................................................................................2511.001000001
......................................................CCAGCA---TAACTGTAGCTGTAACT...............................................................................................................................................................................................................................................................................2311.001100000
.................................................................ACTGTAGCTGTAACTGTAAATATAC.....................................................................................................................................................................................................................................................................2511.001000001
.............................................................................................CACTATGTGTGAGAA-------TGTAAGCGGAGA................................................................................................................................................................................................................................2711.001000001
.............................................................................................................................................................................................................................................................................................AGCAGCAGC---GATCATGTCAC...........................................2011.001100000
...................................................................................................................TGTAAGCGGAGACAACAGCAGC......................................................................................................................................................................................................................2211.001100000
.....................................................................................................GTGAGAA-------TGTAAGCGGAGACAACAGC.........................................................................................................................................................................................................................2611.001000001
....................................................................................................................GTAAGCGGAGACAACAGCAGCA.....................................................................................................................................................................................................................2211.001000001
..........................................................................................ATACACTATGTGTGAGAA-------TGTAAGCGGA..................................................................................................................................................................................................................................2811.001100000
.....................................................................................................GTGAGAA-------TGTAAGCGGAGACAACAGCA........................................................................................................................................................................................................................2711.001100000
....................................................................................................................GTAAGCGGAGACAACAGCAGCAGC...................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................G------------------------------------TTCTATGCC-CTAATC-AACCCGTTT........................................................................................................................2511.001100000
...................................................................................................................................AGCAGCAGCAGCAGCAGCAGCTCAGTGT................................................................................................................................................................................................2811.001100000
...........................................................A---TAACTGTAGCTGTAACTGTAAAT.........................................................................................................................................................................................................................................................................2411.001000001
.....................................................................................................................................................................................................................................TTCTTTTGC-CTG--ACATTTTTACA................................................................................................2311.001100000
......................................................................................................................................................................................................................................................ATTTTTACAGTATGCGCTTT.....................................................................................2011.001000001
...................CGTGTGTAGTTAATTTTAAGA.......................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................GCAGCAGCAGCAGCAGCTCAGT..................................................................................................................................................................................................2220.501100000
....................................................................................................................................................................................................................................................................................AGC---AGCAGCAGCAGC---GATC..................................................1950.201100000
...............................................................................................................................................................................................................................................................................CCGGCAGC---AGCAGCAGCA...........................................................18200.051000010
.............................................................................................................................GACAACAGCAGCAGCAGCAGCAGCAGC.......................................................................................................................................................................................................27200.051100000
droVir3
GCTTTGTTAAAAGTACAATTGTGTGTAGTTAATTTTAAGAT--TCGGACTCTGC--ATCATTAAAACTGCCA------ATGCA---------------TATGTGAGA-------------------------------------------------------------CACATTAGACCAGGCTCCATCGTTGGAACCCCTTTGATTTGATGCA-CTAATCTG---AAACTCTCTTCC-CTG--CCAA--TTACAGTGTGCGCTTTGCCCTCAAGCAGC---AGCAGTAGCACG---GATCATGCCACAA-----------AA----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................CTTTGCCCTCAAGCAGC---AGCAGTAGCAC..........................................................2811.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................CC-CTG--CCAA--TTACAGTGTGCGC........................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................A-CTAATCTG---AAACTCTCTTCC-CTG--CC.........................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTTGCCCTCAAGCAGC---AGCAGT...............................................................2211.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CTTTGCCCTCAAGCAGC---AGCA.................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AACTCTCTTCC-CTG--CCAA--TTACAGT..............................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CCATCGTTGGAACCCCTTTGA..................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AA--TTACAGTGTGCGCTTTG....................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTGCCCTCAAGCAGC---AGCA.................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TG--CCAA--TTACAGTGTGCGCTT......................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GCAGTAGCACG---GATCATGCCACAA-----------A.............................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CTG---AAACTCTCTTCC-CTG--CCAA--TTACA................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTGCCCTCAAGCAGC---AGCAGTAGCAC..........................................................2611.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GCTTTGCCCTCAAGCAGC---.....................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CTTTGCCCTCAAGCAGC---AGCAGTAGC............................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AGTGTGCGCTTTGCCCTCAAGC...........................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GCA-CTAATCTG---AAACTCTCTTCC-................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................GAGA-------------------------------------------------------------CACATTAGACCAGGCTCC.....................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GCTTTGCCCTCAAGCAGC---AGCAGT...............................................................2411.001000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AGCAGTAGCACG---GATCATGCC.............................................2111.001000000000000010000000000000000000000000000000000000000000000000
.................................TTTAAGAT--TCGGACTCTGC--AT.....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................GCAGTAGCACG---GATCATGCCAC...........................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AGTAGCACG---GATCATGCCA............................................1911.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................ACCCCTTTGATTTGATGCA-........................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
droGri2
T--TAGATACA-----AATCGTGTTCAGTTCATTTTAAGAA--TC-TACTTTAT--AGCC---CAACTGTAA------ATACT---------------GATGTCAGAACTGTAGTTGCAAGTAGAG---------------------CTAGC------------TAGTCTTATTTGCCTAGGATCCATT-TTGGAGC--CTTTGAATTATTAAAGCTAATC-A---CATTTCTTTTCCCCTG--ACAA-TTTGCAGTGTGCGCTTTACCTTCAAGCAGCAACAGC---AGCAGCACTGACCACGCCACCC-----------AA----------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................GC---AGCAGCACTGACCACGCC.............................................2011.00110
droWil2
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTGTACTTTGCAACTA-TTTTCAGTATCAATTTTGCCATCTAGTAGC---AGCAGCAGCAGC---GATAATCGTGTAG-----------CC----------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................AGCAGCAGC---GATAATCGTGTA..........................................2115.00500500
.............................................................................................................................................................................................................................................................................................AGCAGCAGC---GATAATCGTGTAG-----------C.............................2312.00200110
.....................................................................................................................................................................................................................................................................ATTTTGCCATCTAGTAGC---AGC..................................................................2112.00200020
.............................................................................................................................................................................................................................................................................................AGCAGCAGC---GATAATCGTGTAG-----------CC----------------------------2411.00100010
...........................................................................................................................................................................................................................................................................................GCAGCAGCAGC---GATAATCGT.............................................2011.00100100
.................................................................................................................................................................................................................................................................ATCAATTTTGCCATCTAGTAGC---A....................................................................2311.00100100
.......................................................................................................................................................................................................................................................................TTTGCCATCTAGTAGC---AGC..................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................AGCAGCAGCAGC---GATAATCG..............................................2011.00100010
.............................................................................................................................................................................................................................................................................................AGCAGCAGC---GATAATCGT.............................................1811.00100010
............................................................................................................................................................................................................................................................................CATCTAGTAGC---AGCAGCAGCAGC---......................................................2311.00101000
............................................................................................................................................................................................................................................................................CATCTAGTAGC---AGCAGCAGCAGC---G.....................................................2411.00101000
......................................................................................................................................................................................................................................................................................C---AGCAGCAGCAGC---GATAATCGTGTAG-----------CC----------------------------2811.00100100
...................................................................................................................................................................................................................................................................CAATTTTGCCATCTAGTAGC---.....................................................................2011.00101000
..........................................................................................................................................................................................................................................................................................AGCAGCAGCAGC---GATAATCGTGTAG-----------CC----------------------------2711.00100100
.........................................................................................................................................................................................................................................................................TGCCATCTAGTAGC---AGCAGC...............................................................2011.00100010
......................................................................................................................................................................................................................................................................TTTTGCCATCTAGTAGC---AGCAGC...............................................................2311.00100010
..............................................................................................................................................................................................................................................................................TCTAGTAGC---AGCAGCAGCAGC---GATA..................................................2511.00101000
.................................................................................................................................................................................................................................................................ATCAATTTTGCCATCTAGTAGC---AGC..................................................................2511.00100010
................................................................................................................................................................................................................................................................................TAGTAGC---AGCAGCAGCAGC---G.....................................................2040.25100010
..................................................................................................................................................................................................................................................................................GTAGC---AGCAGCAGCAGC---G.....................................................18200.05101000
................................................................................................................................................................................................................................................................................TAGTAGC---AGCAGCAGCAGC---......................................................19200.05101000
dp5
C-------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC---AGCAGCAGCAGC---AGCAGCGCTGCGACAGTTTCACTCGAACCACATGCCTTGTGATTCTTCTCTTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
G---------------------------------------------------------------------------------------------------------AA-------CATCGACAGCAACAACAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCAGCAGCAGC------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................CAGCAACAACAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCA........................................................23200.051001000
droAna3
A-------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------ACAGC---AGCAGCAACAGC---AGCAGCATCACAG-----------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................ACAGC---AGCAGCAACAGC---AGCAGCATC.............................................2620.501010000
.....................................................................................................................................................................................................................................................................................GC---AGCAGCAACAGC---AGCAGCATC.............................................2390.111010000
............................................................................................................................................................................................................................................................................................CAGCAACAGC---AGCAGCATCA............................................20160.061100000
.............................................................................................................................................................................................................................................................................................AGCAACAGC---AGCAGCATCA............................................19170.061000001
..............................................................................................................................................................................................................................................................................................GCAACAGC---AGCAGCATCA............................................18200.051000001
............................................................................................................................................................................................................................................................................................CAGCAACAGC---AGCAGCATC.............................................19200.051000001
droBip1
G---------------------------------------------------------------------------------------------------------------------------ACGCAGCAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------C---AGCCGCAGCAGCAGC------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
C-------------------------------------------------------------------------------------------------------------------------AGAAACAACAACAG----------------------------------------------------------------------------------------------------------------------------------------------------C---AGCAGCAGCAACAAC------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads

Generated: 05/17/2015 at 11:32 PM