ID:

dmo_1020

 Coordinate:

scaffold_6496:7383160-7383310 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.3 -9.2 -8.9 -8.8

Flybase annnotation

CDS [Dmoj\GI20181-cds]; exon [dmoj_GLEANR_5059:1]; intron [Dmoj\GI20181-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+

Sense Strand Reads

----------------------------------------##########---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATATATGCATTGTTTATATACACAACATGTTTGAATTTAATGCATGATGGTAACAAAAAAAAAAAAAAAATACAAAAAAAAAAACACAAACAAAATGAAAAAAAAAAAAAAAAAAAACATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAGAAACAAAAAAAAACTGTTTATTTATTTCCTGATGGGGGGTTAACATGGAGGCGTTTTAAAAATTTTAATAATAATTTCTAATATGTTCT
**************************************************...............................................................................((..................((((((((.(((.(((((.........))))).))).))).....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M060
embryo
 V041
embryo
 M046
female body
......................................................................................................................................ATTGAAATGTTGAAACCCCA................................................................................................. 20 0 1 1.00 1 0 1 0 0
.....................................................ACAAAACAAAAAACAAAACACAAAAAAAAAAACACA.................................................................................................................................................................. 36 3 1 1.00 1 1 0 0 0
..............................................................................................................................AGATTGATATTGAAATGTTGAAACCCCA................................................................................................. 28 0 1 1.00 1 0 0 0 1
.....................................................................................................................................TATTGAAATGTTGAAACCCCA................................................................................................. 21 0 1 1.00 1 0 1 0 0
.........................................................AAAAAAAAAAAAAACACAAAAAAAAACACACAAACA.............................................................................................................................................................. 36 2 1 1.00 1 0 0 1 0
............................................................AAAAAAAAAAACACAAAAAAAAAAACACAAACACAA........................................................................................................................................................... 36 2 2 0.50 1 1 0 0 0
.......................................................AAAAAAAAAAAAAAAACACAAAAAAAAAATCACAAA................................................................................................................................................................ 36 2 4 0.25 1 0 0 1 0
...........................................................AAAAAAAAAAAAAACAAAAAAAAAAACACAAACCAA............................................................................................................................................................ 36 2 4 0.25 1 1 0 0 0
...........................................................................AAAAAAAAAATACAGACAAAAAGAAAAAAAAAAAAA............................................................................................................................................ 36 3 5 0.20 1 1 0 0 0
.......................................................AAAAAAAAAAAAAAACCACAAAAAAAAAAACACAAA................................................................................................................................................................ 36 2 6 0.17 1 1 0 0 0
......................................................CAAAAAAAAAACAAAAAAACAAAAAAAAAAACACAA................................................................................................................................................................. 36 2 6 0.17 1 1 0 0 0
......................................................................................................................CACAATAAGGATTGACATTG................................................................................................................. 20 3 11 0.09 1 0 0 0 1
.....................................................................AATAGAAAAAAAAAAAAACAAACAAAATAAAAAAAA.................................................................................................................................................. 36 3 14 0.07 1 1 0 0 0
.........................................................AAAAAAAAACAAAAAACAAACAAAAAAACACAAACA.............................................................................................................................................................. 36 3 15 0.07 1 1 0 0 0
.......................................................AAAAAAAAAAAAAAAAAACACCAAAAAAAACACAAA................................................................................................................................................................ 36 3 20 0.05 1 0 0 1 0
.......................................................AAAAAAAAAAAAAAAAAACAACAAAAAAAACACAAA................................................................................................................................................................ 36 2 20 0.05 1 0 0 1 0
...........................................................AAAAAAAAAAAAAACAAAAAAAAACACCCAAACAAA............................................................................................................................................................ 36 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

ATATATACGTAACAAATATATGTGTTGTACAAACTTAAATTACGTACTACCATTGTTTTTTTTTTTTTTTTATGTTTTTTTTTTTGTGTTTGTTTTACTTTTTTTTTTTTTTTTTTTTGTATTATTTCTAACTATAACTTTACAACTTTGGGGTTTTTTTTCTTTGTTTTTTTTTGACAAATAAATAAAGGACTACCCCCCAATTGTACCTCCGCAAAATTTTTAAAATTATTATTAAAGATTATACAAGA
**************************************************...............................................................................((..................((((((((.(((.(((((.........))))).))).))).....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V110
male body
......................................ATTACGACCTGCCATTGTTT................................................................................................................................................................................................. 20 3 6 0.17 1 1 0
...................................................ACTGTTTCTTTTTTTTTTATATGTT............................................................................................................................................................................... 25 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:7383110-7383360 + dmo_1020 TATATATGC--ATTGTTTATATA----CACAAC-ATGTTTGAA------------------TTTAATGCATGATGGTAACAAAAAA---------AAAAAAAAAATACAAAAAAAAAA---ACACAA-A-CAAAATGAAAAA--------AAAAAAAAAAAAAAACATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAG-------AAACAAAA----AAAAACTGTT--T-AT-------TTATTTC-CT-------GAT-GGG----GGG--TTAACA-TGGA--GGCGTTTTAAAA-------------------A------------T------------TT-----TAA-TA------A----TAAT--TTCTAATATGTTCT
droVir3 scaffold_12875:16372961-16373182 - TATAT---GC-ATTGTTTATATA----CACAAC-ATGTTTGAA------------------TTTGATGCATGATGGTAACAAACAA---------A------------------------------A-AC-----------------A--AAAACAAAAAA--AACGTAATAAAGATTGATATTGAAATGTTGAAACCCAAAAAAAAAAA--------ACAAAA-----AAAAATA-------TTATGTTTTTATTG--GT-------AATT-GGTG-T-------------GAAGTTG--GGGCTTAAGTGGAAGTTCTGTTAAA-CA------------A----------------------------TT-AAAATTAATTATGTTAACAATTCTC
droGri2 scaffold_15245:5228857-5229075 - TATCTA---C-ATTGTTTATATA----CACGAC-ATGTTTGAA------------------ATTGATGCAAAGTGGTAACAAACAA---------A------------------------------A-A-----------------------------CAA--AACGTAATAAAGATTGATATTGAAATGTTTAAACCCCAAAAAAGAA---------ACGAAA---------TCTGCCATC-T-----TTTTATT---GG----GCTTGGTTGG----GGAAAT-------------------------TA-------TATTAAA-AAAAAAAAACAAAAATCAAAATCAAAA------CACGATGAAACT-AATA-TAAT-----TTATTTTTCCT
droWil2 scf2_1100000004382:299712-299970 - -------------CGTTTATATATACACACAACAATGTTTAAATGACAAAAACAAAAAAAATTTGATAAAAAGTGGTAACAAAATTTGCAAGA-AACAAA------------AAAAAA--------A-------------------AAA--CAGAAACCAAAACCCATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAA---------ACAAAAAAAAAAAAACTATTTCATAT-----TTTTATTTC-GCAAGGAAAAATTTGG-G-C------------A--------------AATTTTTCAGGGCGGGTAAATTA------------A----------------------------CT-AACATAAATATTTTTCATATATCAT
dp5 3:16206970-16207211 + dps_1243 TGTATGTGGA-ATCGTTTATATA----CA---CATTGTTCGAT------------------------G-AAAGTGGTAACAGAGAA---------ACAAACAA---ACAAA-AAAAAAACAACAAAAAACCAAAAACAAAAA---AAAA--C--AAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAGAAA-----A----GAAA----------------ATAATTGTATTACTGATT--GA-------GATC-GGGG-C------------AGCAGCCG--CCTGTAAAGTG-------TTT---------------------------------------CCG-TG------CAAATTAATCACTATCGTATCTCCT
droPer2 scaffold_4:557756-558000 - TGTATGTGGA-ATCGTTTATATA----CA---CATTGTTCGAT------------------------G-AAAGTGGTAACAGAGAA---------ACAAACAA---ACAAAAAAAAAAACAACAAAAAACCAA-AACAAAAAAAAAAAA--C--AAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAGAAA-----A----GAAA----------------ATAATTGTATTACTGATT--GA-------GATC-GGGG-C------------AGCAGCCG--CCTGTAAAGTG-------TTT---------------------------------------CCG-TG------CAAATTAATCACTATCGTATCTCCT
droAna3 scaffold_13266:17873325-17873506 - TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAT------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------AAA--CAGCAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAGGA---------AAGG------ATCCTCTT--TAATTT---GATTTATT--GG----A---A---GGGGGT-----CAA--A-TGG---GGTGCTA-------------------------------------T---------------------------------CATTAAT---------AAGA--T
droBip1 scf7180000396735:1136870-1136988 - TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-------------------AAA--CAGCAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAGAA-----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302406:118209-118415 - TATATATGGAAATCGTTTATATA----CAACACATTGTTTGAA------------------A----TG-AAAGTGGTAACAGAGAC----AGAAAACAAAAAA---ACGATAAAAAAAACAACAAAAAACC-------------------AAAACAAACAACACGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAG------AGAA----AA--TTCGAGATTATTACTTATT--AT------CTT-------------CTGG----GGG--TT------------------------------------------------------------------------------------------ATTAAC---------TAGTTCT
droFic1 scf7180000454066:1283303-1283445 + TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-AC---------------AAAA-CAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAATAA---------ACAAGA---------CAATTAATTATT--AT------TTT--------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491349:1054382-1054572 + TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A----------------AAAA--C--AAACCAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAA------AGAATCAAGG---------CCATTAATTATT--AA------TTTCGG----GCAGATTTGG----GGG--CTACCAG--G--TTG--------------------TAT----TTG------------T------------------------------CTGAATTAAT---------CACT--T
droRho1 scf7180000779999:364514-364690 + TAT--ATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------------AACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAG--------AAACAAGG---------TTATTAATTATT--AT------TTTCGG----GAAG-TTTGG----GGG--T------TGTA--------------------------G----TTG------------T------------------------------CTGAAATAAT---------CAGTTTC
droBia1 scf7180000301506:97952-98084 - TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------AAC-AAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAACAAAA---------ACCAGG---------GCATTCATT------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415683:39838-40028 + TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------AAA-CAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAATT---------ATAAAG---------CCATTCATTAT-----TTTTATC---GG----GCAGAT-TGG----GGG--TCGCCAT--G--TTG--------------------TGT----TTG------------T------------------------------CTGAATTAAT---------TAGTTTC
droEug1 scf7180000409672:4614918-4615127 + TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAG------------------------A-AAAGTGGTAACAGAAAA---------A------------------------------A-CA---------------AAAACAAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAGAA---------AGAAAG----AAAGATTATTAATTTTT--AT------TTTGGG----AAAGATTTGG-G-T-----GGGCTAG--G--TTG--CTT----------------------TTA------------T------------TTTTTTTTCC-TT------TAAATTAAT---------CCATTTT
dm3 chr2R:6399065-6399199 - TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAAAACACAGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:7167218-7167347 - TATATATGAA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAC-----AGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:4010626-4010759 - TATATATGAA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAAAA-ACAGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:2741554-2741679 + TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------C-------------------------------------------------------------CCAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAATAAC------AGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:19353205-19353404 + TATATATGAA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAACAAACAGAATCAAGC---------ACATT-ATAAT-----TGTTACT---GG----GCAGTTTTGG----GGA--TCGCCAT--G--ATG--------------------TAT----TTG------------T------------TTTATTTAC---------CTAAACTAAT---------CCATTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TATATATGC--ATTGTTTATATA----CACAAC-ATGTTTGAA------------------TTTAATGCATGATGGTAACAAAAAA---------AAAAAAAAAATACAAAAAAAAAA---ACACAA-A-CAAAATGAAAAA--------AAAAAAAAAAAAAAACATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAG-------AAACAAAA----AAAAACTGTT--T-AT-------TTATTTC-CT-------GAT-GGG----GGG--TTAACA-TGGA--GGCGTTTTAAAA-------------------A------------T------------TT-----TAA-TA------A----TAAT--TTCTAATATGTTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................ATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2011.001000010
.............................................................................................................................................................................AGATTGATATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2811.001100000
....................................................................................................................................................................................TATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2111.001000010
droVir3
TATAT---GC-ATTGTTTATATA----CACAAC-ATGTTTGAA------------------TTTGATGCATGATGGTAACAAACAA---------A------------------------------A-AC-----------------A--AAAACAAAAAA--AACGTAATAAAGATTGATATTGAAATGTTGAAACCCAAAAAAAAAAA--------ACAAAA-----AAAAATA-------TTATGTTTTTATTG--GT-------AATT-GGTG-T-------------GAAGTTG--GGGCTTAAGTGGAAGTTCTGTTAAA-CA------------A----------------------------TT-AAAATTAATTATGTTAACAATTCTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................CGTAATAAAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATATTGAAATGTTGAAACCCAAAA...................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GGCTTAAGTGGAAGTTCTGTT...........................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droGri2
TATCTA---C-ATTGTTTATATA----CACGAC-ATGTTTGAA------------------ATTGATGCAAAGTGGTAACAAACAA---------A------------------------------A-A-----------------------------CAA--AACGTAATAAAGATTGATATTGAAATGTTTAAACCCCAAAAAAGAA---------ACGAAA---------TCTGCCATC-T-----TTTTATT---GG----GCTTGGTTGG----GGAAAT-------------------------TA-------TATTAAA-AAAAAAAAACAAAAATCAAAATCAAAA------CACGATGAAACT-AATA-TAAT-----TTATTTTTCCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
-------------CGTTTATATATACACACAACAATGTTTAAATGACAAAAACAAAAAAAATTTGATAAAAAGTGGTAACAAAATTTGCAAGA-AACAAA------------AAAAAA--------A-------------------AAA--CAGAAACCAAAACCCATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAA---------ACAAAAAAAAAAAAACTATTTCATAT-----TTTTATTTC-GCAAGGAAAAATTTGG-G-C------------A--------------AATTTTTCAGGGCGGGTAAATTA------------A----------------------------CT-AACATAAATATTTTTCATATATCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................ATTGAAATGTTGAAACCCC......................................................................................................................................................................................................1912.00220000
........................................................AAAAATTTGATAAAAAGTGGTAA...............................................................................................................................................................................................................................................................................................................................2311.00101000
.....................................................................................................................................................................................ATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2011.00100001
.................TATATATACACACAACAATGT........................................................................................................................................................................................................................................................................................................................................................................2111.00101000
......................................................................................................................................................................ATAATAAAGATTGATATTGAAATG................................................................................................................................................................................................................2411.00110000
.................................................................................................................................................................................TGATATTGAAATGTTGAAACC........................................................................................................................................................................................................2111.00110000
..............................................................................................................................................................................GATTGATATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2711.00100100
dp5
TGTATGTGGA-ATCGTTTATATA----CA---CATTGTTCGAT------------------------G-AAAGTGGTAACAGAGAA---------ACAAACAA---ACAAA-AAAAAAACAACAAAAAACCAAAAACAAAAA---AAAA--C--AAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAGAAA-----A----GAAA----------------ATAATTGTATTACTGATT--GA-------GATC-GGGG-C------------AGCAGCCG--CCTGTAAAGTG-------TTT---------------------------------------CCG-TG------CAAATTAATCACTATCGTATCTCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................TTGAAATGTTGAAACCCCAAA...................................................................................................................................................................................................2112.0020200000000
..................................................................................................................................................................................GATATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2311.0010000010000
............................................................................................................................................................................AAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2111.0010100000000
.................................ATTGTTCGAT------------------------G-AAAGTGGT.................................................................................................................................................................................................................................................................................................................................1911.0010000001000
...........................CA---CATTGTTCGAT------------------------G-AAAGT....................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................CATTGTTCGAT------------------------G-AAAGTGGT.................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................ATA----CA---CATTGTTCGAT------------------------G-AAAGTGGT.................................................................................................................................................................................................................................................................................................................................2511.0010000001000
...................................................................................................................................................................................ATATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2211.0010100000000
.....................................TTCGAT------------------------G-AAAGTGGTAACAGAGAA---------AC.............................................................................................................................................................................................................................................................................................................2611.0010000001000
.................................................................................................................................................................................TGATATTGAAATGTTGAAACCCCAAA...................................................................................................................................................................................................2611.0010100000000
droPer2
TGTATGTGGA-ATCGTTTATATA----CA---CATTGTTCGAT------------------------G-AAAGTGGTAACAGAGAA---------ACAAACAA---ACAAAAAAAAAAACAACAAAAAACCAA-AACAAAAAAAAAAAA--C--AAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAGAAA-----A----GAAA----------------ATAATTGTATTACTGATT--GA-------GATC-GGGG-C------------AGCAGCCG--CCTGTAAAGTG-------TTT---------------------------------------CCG-TG------CAAATTAATCACTATCGTATCTCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................TCGAT------------------------G-AAAGTGGTAACAGAGAA---------...............................................................................................................................................................................................................................................................................................................2312.002000002
...........ATCGTTTATATA----CA---CATTGTTCGAT------------------------G-.........................................................................................................................................................................................................................................................................................................................................2612.002200000
....................................................................................................................................................................................TATTGAAATGTTGAAACCCCAAA...................................................................................................................................................................................................2311.001001000
droAna3
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAT------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------AAA--CAGCAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAGGA---------AAGG------ATCCTCTT--TAATTT---GATTTATT--GG----A---A---GGGGGT-----CAA--A-TGG---GGTGCTA-------------------------------------T---------------------------------CATTAAT---------AAGA--TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................ATTGAAATGTTGAAACCCCAAA...................................................................................................................................................................................................2211.001000001
.....................................................................................................................................................................................................................................................................................GT-----CAA--A-TGG---GGTGCTA-------------------------------------T---------------------------------CATTA..................2211.001010000
............................................................................................................................................................................AAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2111.001000010
droBip1
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-------------------AAA--CAGCAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAGAA-----------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TATATATGGAAATCGTTTATATA----CAACACATTGTTTGAA------------------A----TG-AAAGTGGTAACAGAGAC----AGAAAACAAAAAA---ACGATAAAAAAAACAACAAAAAACC-------------------AAAACAAACAACACGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAG------AGAA----AA--TTCGAGATTATTACTTATT--AT------CTT-------------CTGG----GGG--TT------------------------------------------------------------------------------------------ATTAAC---------TAGTTCTSizeHit CountTotal NormTotal
No Reads
droFic1
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-AC---------------AAAA-CAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAATAA---------ACAAGA---------CAATTAATTATT--AT------TTT--------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A----------------AAAA--C--AAACCAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAA------AGAATCAAGG---------CCATTAATTATT--AA------TTTCGG----GCAGATTTGG----GGG--CTACCAG--G--TTG--------------------TAT----TTG------------T------------------------------CTGAATTAAT---------CACT--TSizeHit CountTotal NormTotal
No Reads
droRho1
TAT--ATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------------AACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAG--------AAACAAGG---------TTATTAATTATT--AT------TTTCGG----GAAG-TTTGG----GGG--T------TGTA--------------------------G----TTG------------T------------------------------CTGAAATAAT---------CAGTTTCSizeHit CountTotal NormTotal
No Reads
droBia1
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------AAC-AAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAACAAAA---------ACCAGG---------GCATTCATT------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A------------------------------A-A-----------------AAA-CAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAATT---------ATAAAG---------CCATTCATTAT-----TTTTATC---GG----GCAGAT-TGG----GGG--TCGCCAT--G--TTG--------------------TGT----TTG------------T------------------------------CTGAATTAAT---------TAGTTTCSizeHit CountTotal NormTotal
No Reads
droEug1
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAG------------------------A-AAAGTGGTAACAGAAAA---------A------------------------------A-CA---------------AAAACAAAACAAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAGAA---------AGAAAG----AAAGATTATTAATTTTT--AT------TTTGGG----AAAGATTTGG-G-T-----GGGCTAG--G--TTG--CTT----------------------TTA------------T------------TTTTTTTTCC-TT------TAAATTAAT---------CCATTTTSizeHit CountTotal NormTotal
No Reads
dm3
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAAAACACAGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................ATAAAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TATTGAAATGTTGAAACCCC......................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................TTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CC..................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....TATGGA-ATCGTTTATATA----CA---CATTGTT.......................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................TTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CC..................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
......................................................................................................................................................................................TTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CAACAAGAATAATAAAGATTGATATTGAAA..................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TATTGAAATGTTGAAACCCCAA....................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................TAATAAAGATTGATATTGAAATGTTGA............................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATATTGAAATGTTGAAACCC.......................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100
.....................................TTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------C...................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................TGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCA.................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................AGAATAATAAAGATTGATATTGAAATGTT..............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................AAAGATTGATATTGAAATGTT..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................ATATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................TTGATATTGAAATGTTGA............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TATATATGGA-ATCGTTTATATA----CA---CAT...........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AATAAAGATTGATATTGAAATGTT..............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................GAATAATAAAGATTGATATTGAAATGT...............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................TGATATTGAAATGTTGAAACCCC......................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................ATAAAGATTGATATTGAAAT.................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AAGATTGATATTGAAATGTTGAAA..........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................CCAACAACAAGAATAATAAAGATTGATAT.......................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CC..................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................TGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAAC...............................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TATATGGA-ATCGTTTATATA----CA---CAT...........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ATTGAAATGTTGAAACCCCAAA...................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TAAAGATTGATATTGAAAT.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CCAACAACAAGAATAATAAAGATTG...........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGA...........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TATGGA-ATCGTTTATATA----CA---C.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................TGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACA..............................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAATAAAGATTGATATTGAAATG................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATATATGGA-ATCGTTTATATA----CA---CATTG.........................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TGTTGAAACCCCAAAAAAA...............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TTGAAATGTTGAAACCCC......................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTG...................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTGAA------------------------G-AAAGTGGTAACAGAAA.........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................AACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAA....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GAA------------------------G-AAAGTGGTAACAGAAA.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TGATATTGAAATGTTGAAACC........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAATAAAGATTGATATTGA....................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................GAA------------------------G-AAAGTGGTAACAGAAAA---------...............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCA.................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................GAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAAC...............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATA........................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAATAAAGATTGATATTGAAATGTT..............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TATATGGA-ATCGTTTATATA----CA---CATTG.........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................AATAAAGATTGATATTGAAATGTTGAAACC........................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CA---CATTGTTTGAA------------------------G-AAAGTGGTAACA.............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................ATTGTTTGAA------------------------G-AAAGTGGTA................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTGATATTGAAATGTTGAAAC.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATTGTTTGAA------------------------G-AAAGTGGTAACAGA...........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................ATAAAGATTGATATTGAAATGTTGAAAC.........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGTTTGAA------------------------G-AAAGTGGTAAC..............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATATTGAAATGTTGAAACCCCAAAAA.................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAATAAAGATTGATATTGAAATGTTGAAA..........................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AATAAAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAAT......................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTG...........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGAT.............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TATTGAAATGTTGAAACCCCAAAA..................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAATAAAGATTGATATTGAAATGT...............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATATATGAA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAC-----AGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................TTGTTTGAA------------------------G-AAAGTGGTAACAGA...........................................................................................................................................................................................................................................................................................................................2412.00200000000002000000
.......................................................................................................................................................................TAATAAAGATTGATATTGAAATGTTGAA...........................................................................................................................................................................................................2811.00100000010000000000
.................................ATTGTTTGAA------------------------G-AAAGTGGTAACA.............................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
....TATGAA-ATCGTTTATATA----CA---CATTGTT.......................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
....................................................................................................................................................................................TATTGAAATGTTGAAACCCCAAA...................................................................................................................................................................................................2311.00100000000000100000
.......................................................................................................................................................................TAATAAAGATTGATATTGAAATGTTGA............................................................................................................................................................................................................2711.00100000001000000000
....................................................................................................................................................................................................CCCCAAAAAAAAC-----AGA.....................................................................................................................................................................................1630.33100000010000000000
droSec2
TATATATGAA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAAAA-ACAGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........A-ATCGTTTATATA----CA---CATTGTT.......................................................................................................................................................................................................................................................................................................................................................................2211.0011000
droYak3
TATATATGGA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------C-------------------------------------------------------------CCAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAATAAC------AGAATCAAGG---------ACCTTAATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................ATATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2211.00101000000000
.........................................................................................................................................................................ATAAAGATTGATATTGAAATGTTG.............................................................................................................................................................................................................2411.00100000010000
..................ATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGT.................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................................................................................................................................................................ATAATAAAGATTGATATTGAAATGT...............................................................................................................................................................................................................2511.00100000010000
..............................................................................................................................................................................GATTGATATTGAAATGTTGAAACCCCA.....................................................................................................................................................................................................2711.00101000000000
..................................TTGTTTGAA------------------------G-AAAGTGGT.................................................................................................................................................................................................................................................................................................................................1811.00100000010000
droEre2
TATATATGAA-ATCGTTTATATA----CA---CATTGTTTGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCAACAACAAGAATAATAAAGATTGATATTGAAATGTTGAAACCCCAAAAAAAAACAAACAGAATCAAGC---------ACATT-ATAAT-----TGTTACT---GG----GCAGTTTTGG----GGA--TCGCCAT--G--ATG--------------------TAT----TTG------------T------------TTTATTTAC---------CTAAACTAAT---------CCATTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................ATAAAGATTGATATTGAAAT.................................................................................................................................................................................................................2011.0010000010
...............................................................................................................................................................................ATTGATATTGAAATGTTGAAACCCCAAA...................................................................................................................................................................................................2811.0010000010
.......................................TGAA------------------------G-AAAGTGGTAACAGAAAA---------A----------------------------------------------------------CCA.................................................................................................................................................................................................................................................2611.0011000000
.......GAA-ATCGTTTATATA----CA---CATTGTT.......................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.ATATATGAA-ATCGTTTATATA----CA---CATT..........................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
........................................................................................................................................................................................................................................................................................GA--TCGCCAT--G--ATG--------------------TAT----TTG------------T------------T...........................................2111.0011000000
............................A---CATTGTTTGAA------------------------G-AAAGTG...................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................A----CA---CATTGTTTGAA------------------------G-AAA......................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................................................................................................................................................................................TGATATTGAAATGTTGAAACCCCAAAA..................................................................................................................................................................................................2711.0011000000
......................................................................AAGTGGTAACAGAAAA---------A----------------------------------------------------------CC..................................................................................................................................................................................................................................................1911.0010001000
..............................................................................................................................................................................GATTGATATTGAAATGTTGAAACCC.......................................................................................................................................................................................................2511.0011000000
...................................TGTTTGAA------------------------G-AAAGTGGTAACAGAAA.........................................................................................................................................................................................................................................................................................................................2511.0010000100

Generated: 05/17/2015 at 11:32 PM