dmo_1016

exon [dmoj_GLEANR_5047:2]; CDS [Dmoj\GI20168-cds]; exon [dmoj_GLEANR_5047:1]; CDS [Dmoj\GI20168-cds]; intron [Dmoj\GI20168-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------------------------------################################################## CGAGCAGAGCGACGAGCCGGAGAACATGAGCGTCAGTCACATGGACAGCTGCAAGCAGGAGCTGGCCACAACAGAGGCATCTGCTGCATCGGCCGCGGCAGCGGCTGCGGCAGCAGCAGCGGCAGCGGCGTCAGCGTCAGCATCGGGAACTGGCGCCGGCTCGAGCTCCTCGGCCAGCTCCTCG ************************************************...........((((((.........((..(((((((..(((((((....)))))))..)))))))..))......)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	M060 embryo
........................CATGAGCGTCTGTTACATCG............................................................................................................................................	20	3	3	0.33	1	1	0
........................................................................................................CTGCGGCAGCAGCAGCGGCGGCGGC.......................................................	25	1	6	0.17	1	0	1
..............................................................................ATCTGCTGCAACGGCAGCGGCAGCA.................................................................................	25	3	20	0.05	1	0	1

GCTCGTCTCGCTGCTCGGCCTCTTGTACTCGCAGTCAGTGTACCTGTCGACGTTCGTCCTCGACCGGTGTTGTCTCCGTAGACGACGTAGCCGGCGCCGTCGCCGACGCCGTCGTCGTCGCCGTCGCCGCAGTCGCAGTCGTAGCCCTTGACCGCGGCCGAGCTCGAGGAGCCGGTCGAGGAGC ************************************************...........((((((.........((..(((((((..(((((((....)))))))..)))))))..))......)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	M046 female body	V110 male body	V056 head
.................................................................................ACCACGTAGCCGGCCCTGT....................................................................................	19	3	11	0.91	10	10	0	0	0
.................................................................................ACCACGTAGCCGGCCCCG.....................................................................................	18	2	5	0.20	1	0	1	0	0
................................................................................................................................................................AGCTCGAGGAGCCAGTTGAT....	20	3	14	0.07	1	0	0	0	1
.....................CTTGGAGTCGCAGTCAATG................................................................................................................................................	19	3	14	0.07	1	0	0	1	0
.....................CTCGTAGTCGCAGTCAGT.................................................................................................................................................	18	2	16	0.06	1	0	0	1	0
.................................................................................................................................................................GCTCGAGGGGCCGGTAGTG....	19	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:7059144-7059327 +	dmo_1016	CG-AGC-AGAG---CGA------------------------------------CGA---GCCGGAG--------AACATGAGCGTCAG------TCACA------------------TGGACAGCT---------------GCAAGCAGGAGCTGGCCA------CAA---CAGA---------------------------GGCATCTGCTGCATCGGCCGC----------------------------GG--------------------------CAGCG-G---CTGCGG---------------CAGCAGCAGC---------------------GGC---------------------------------------------A--------GCGGCGTCAGCGTCAGCATCGGGA----------------------------ACTGGCGCCGG-------------------------------CTCGA---GCTCCTCGGCCAG--CTCCTCG
droVir3	scaffold_12928:2268492-2268667 -		A---GC-AGTA---TGTTAAGATGGGGCA------------------CGCCCATCA---GCAGCAGC-------AGCAGCAGC---AA------CA---------GCA---GCAGCAGC---AGCAGCAAATGCATCAC-------------C-------------AT---C---------------------------ACCACCATC------A---------G------------------CA-G---------CAGCAGCAGCAGCA---------------GCA---------------------GC------AG-------------------------CAACAGCAGCAG-----------------------CA---------GCAGCAGC--------A---------GCA------------------------------------------G---CAAT----------------------CCTCGC---GCTCTGCAGCTAG--TCCGCTG
droGri2	scaffold_16898:586-746 -		GC-AGC-AGCA---GCG------------------------------------GCA---GCAGCAGC-------AGCAGCAGCGGCAG------CAGCAGCAGCAGC------------------A---------------GC-------AGCG----GCAGCAGCAG------------------------------CAGCAGCAGCGGCAGCAGCAG----------------------------CAGCAG--------------------------CAGCGG----CAGCGGCAGCAGCAGCAGCAG---------C---------------------AGC------------------------------A-----------------------GCA------GCGGCAGCGGCAGCAGCAG----------CAGCGGCAGCG-------------------------------------------------------------------------GC
droWil2	scf2_1100000002165:3473-3631 +		A---GC-AGCA---CTA------------------------------------TCAGCAGCAGCAGC-------ATCAGCAGC---AT------CAGCA------------------GCAACAGCT---------------TCAG-CATCAGC----------AGCAG---------------------------------CAGCATCAGCAGCATCAGCCGC----------------------------A---------------------------------GCAGCAGCA---------------GC------AG---------CAGCATTAGCGGCAGC------------------------AGCAGCAGCGCCA-----------------------------ACATCAGCGGAAGC---------------------------------------------------------------------------------AGCAGCAG--CGCCAGC
dp5	XR_group6:1441140-1441323 +		GC-AGC-AGCA---TGG------------------------------------GCA---GCACCATCACAGTGCAGCCGCGGT---GG------C---------------------------CGCT---GCTGCGGCGGCAG----------CC-------------G------TC-CACCACCA------------GCACCAGCAACAGCAGCAGCAGGCGC----AG------------------CAAGT---------------------------------GCA---G------------------CAGCAGCAGC---------------------AAC------------------------AGCAGCACCATCA-----------------------------------TCAGCAGCAGGTGGCTGCCGTT---------------------GC-------------------------------CATGG---CGGCCATGGCCAA--TTTGTTG
droPer2	scaffold_122:4000-4161 +		GG-GCA---GA---GGACGAGCCGCTCCAGAGTCGGCCGCCGGACGA------CAA---CGCGCGCG-------GCC---------AA------GG---------GGA---TCAGCAGC---CGCAGCAGCAGCCGCAG-------------C-------------AG------CAGCATCAGCA------------GCAGCAGCATC---A----------------------------------------------------GCAGCAGCGTCAGCA------GCAGCAGCA---------------GC------AC--------------------------------------------------------------------------------------------------TGG------------------------------------------------------------------------CACGG---GCC------ACAG--GGAGCCG
droAna3	scaffold_13248:1294400-1294569 +		CG-GCCAGCAG---CGA------------------------------------CGA---GGTGG-TC-------CACATCAGCAGCAC------CCGACTGCCCTCC------------------A---------------TC-------CCGG-----------------------------------------------------------------------------AGCGCAGTGCCGCA-G---------CGGCGGCGGCAGCG---------------G------------------------C------AG-------------------------CAGCAGCAGCGG-----------------------CC---------GCCGCAGG--------A---------GCC---GCTC----------TCATGGAGCCCGGAACCGGCGCCGG-------------------------------TTCTG---GGGGAGTGGGCAG--CGGGGCG
droBip1	scf7180000395895:31313-31474 +		GCGGAAAGTGC---CGC------------------------------------CGA---GAAGG-CC-------AGCGCCGCC---AGCAA----------------G---GCGGTGGA---GGTGACAGCAGC--------------------------------------CGGC------GAA------------------CG---------G---------G------------------TCG-CCAAGGCAGCGGCAGCCGCAGCA---------------GCAGCGGCG---------------GC------AG-------------------------------C-----AGCGC------------------AA------GTG--------GCA---------------TCTG-----------------------------------------GTGGCAGTGCCAGCTCG------------------------GCCTCGACCAC--CGCCACC
droKik1	scf7180000302696:774270-774450 -		GC-ACA-GCCT---CCA------------------------------------GAC---GCAGACCA-------AGTTGCTCAAGCAA------CAGCAGGAGCAAC------------------A---------------GT-------TGCT----GCTCCAACAG------------------------------CAGCAGCAACAGCAGCAGCAG----------------------------CAACAA--------------------------CAGCAG----CAGCAGCAGCAGCAGCAACAG---------G---------------------AGC------------------------------A-----------------------TCA------CCATCACCATCATAACCAG----------CAGCAGCAGCA-----------------------------------------------------GGTCATTGTCCAGTCCCAGTTG
droFic1	scf7180000453872:633377-633552 +		GA-GCA-GGGGGATCCA------------------------------------CTG---GCGGCGGT-------GGCGGTGG---CCT------AGGAACAAACAGC------------------G---------------GC-------AGCG----GCAGCGG---------A---------------------------GC----------G---GTCTC-CTCATCGAGCGCAGCGCCAC---CGACGGCGG------CGACAGCA---------------GCGGCCACG---------------GC------AG-------------------------------C-----------------------G--------------------------------GGTTCGGGTTCGGGC----------------------------TCCGGATCCGG-------------------------------TTCGA---GCGTCAGCGGAGG--CTCCTCC
droEle1	scf7180000491268:721848-722035 -		CC-AGC-AAAG---CCA------------------------------------CAA---GCAGGACA-------AGCAGCAGCAGCAG------TAACA------GCA---GCAGTAGC---AGCGATAACTGCCAAAG-------------C-------------AG------CAACAT-------------------------------------------------------------------CTACAGCGGCAACAGCAACAACA---------------GCAGCAGCG---------------GC------AG-------------------------------C-----AACAC------------------CA------CCG--------GCA---ACA------------------------------------------------------GCAGCAATACCAGCACCACCACGACGCTGTACACGT---GCTCCAGCGCCTC--CTCGTCG
droRho1	scf7180000780256:93202-93377 +		CC-AGC-AAAG---CCA------------------------------------CAA---GCAGGACA-------AGCAGCAGC---AG------CAGCA---------------GTAAC---AGCGAACACAGCCAAAG-------------C-------------AG------CAACAT-------------------------------------------------------------------CTACAGCGG---CAACAGCAACA---------------GCAGCAGCG---------------GC------AG-------------------------------C-----AACAC------------------CA------CCA--------GCAAC---A------------------------------------------------------GCAGCAACACCAGCACCACCACGACGCTGTACACGT---GCTCCAGCGCCTC--CTCGTCG
droBia1	scf7180000298389:751758-751952 +		A---GC-AGCA---ACA------------------------------------CCAGCAGCAGCAAC-------ATCAGCAGC---AG------CAGCA------------------GCAACAGCC---------------GCAC-CATCAGC----------AGCAG---------CAGCAACAGGCGCACCATCAGCAGCAGCAACTCCACCAGCAGCAGCAA------------------CAG-CCACA---------------------------------------CCAC---------------CAGCAGCAGC---------------------CGC------------------------AGCAGCACCATCAACAGCA-----------GCA------GCAACTCCACCAGCA------------------------------------------------------------------------------CCAGCAGCACCAG--CAGCTCG
droTak1	scf7180000415157:436387-436589 -		CT-AGC-AAAA---CCA------------------------------------CAA---GCAGGACA-------AGCAGCAAC---AG------CAGCA------------------GCGACAGCA---GCAGCGACAG-------------C-------------AG------CAACATCAACA------------GCAACATCAAC---AACATCAG-------------------------------------------CAACAACA---------------GCAGCAGCG---------------GC------AG-------------------------------C-----AACACCGGCAACAGCAACA--------------------------------GCAATACTAGCGACA---------------------------------------GCAGCAACACCAGCACCACCACGACGCTGTACACGT---GCTCCAGCGCCTC--CTCGTCG
droEug1	scf7180000409894:8804-8987 +		A---AC-AAAG---ACA------------------------------------GCA---GCAGTGAA--AA---AAAAACAGC---GG------CAACA------------------AAGACAGCA---------------GCAGTGAAAAAC--AG-----CG---GCAACAAAA------ACA------------------GC---------A---------A------------------CAG-CCAAAACAA---------CGGCA---------------GC------------------------------AAC---------------------AAC------------------------AGCAGCAGCATCAACAGCGGCA--------GCGACGACAGCGGCAGCGACGACA----------------GCGGCAGCG--------------------------------------------ACGAC-----CAGTGCTGCCAA--CTTTTGG
dm3	chrX:9649008-9649180 +		TC-ACC-AGCA---GCA------------------------------------GCA---GCAGCAGC-------AACATCAGCAGCAA------CAGCAGCAACAGC------------------A---------------GC-------AGCA----GCAGCATCAA------------------------------CAGCAGCAACAGCAGCAACAT----------------------------CAACAG--------------------------CAGCAG----CAGCAACATCAGCAGCAGCAG---------C---------------------AGC------------------------------A-----------------------ACA------CCACCAGCAACAGCAGCAG----------CATCATCACCA-----------------------------------------------------GCAATTTGGCCAG--------C
droSim2	3l:5195076-5195245 -		CT-AGC-AAAA---CCA------------------------------------CAA---GCAGAACA-------AGCAGCAGC---AA------CA---------GCA---GCAGCAGC---AGCAACAACAGCGACAG-------------C-------------AG------CAACATCAACA------------GCAGCAGCAAC---A----------------------------------------------------GCAGCA---------------------GCG---------------GC------AGCAGCAGCAGCAGCAGTACCTGCAAC------------------------AGCAACACCTGCA-----------------------------------ACAGCAGCA---------------------------------------------------------------------------GCAACACCACCAG--CACCACC
droSec2	scaffold_12:436629-436821 +		CA-AGA-GTGC---CGA------------------------------------CGA---GGTCT-AC-------GACATCATC---GACGAGAGTCGCC---TGGAC-GCCCAGGTGGA---ACTG-----------------------------AT-----CG---TCAGCCGGC------CGA------------------TC---------G---------G------------------CA-G---------CGGCGGCGGCAGTG---------------GCGG---------------------C------AG-------------------------CAGCACCAACGT-----------------------CA---------GTCCCATC--------A---------GCG------------------------------------------GAGCCTCCGGCGGATCCGCCAACAGTGTGCCCGCTCGCCGCTCCTCGGCCAA--CTTCCCG
droYak3	v2_chrUn_1668:542-720 -		GC-AGC-AGGG---GCA------------------------------------GCA---GCAGGGGC-------AGCAGCAGGGGCAG------CAGCAGGGGCAGC------------------A---------------GC-------AGGG----GCAGCAGCAG------------------------------GGGCAGCAGCAGGGGCAGCAG----------------------------CAGGGG--------------------------CAGCAG----CAGGGGCAGCAGCAGTGGCAG---------C---------------------AGC------------------------------A-----------------------GGG------GCAGCAGCAGTGGCAGCAG----------TAGTGGCAGCA-----------------------------------------------GGGACCATCCGG------G--GGTCCTC
droEre2	scaffold_4770:7907201-7907393 +		CA-AGA-GTGC---CGA------------------------------------CGA---GGTCT-AC-------GACATCATC---GACGAGAGTCGCC---TGGAC-GCCCAGGTGGA---ACTG-----------------------------AT-----CG---TCAGCCGGC------CGA------------------TC---------G---------G------------------CA-G---------CGGCGGCGGCAGTG---------------GCGG---------------------C------AG-------------------------CAGCAGCAACGT-----------------------CA---------GTCCCATC--------A---------GCG------------------------------------------GAGCCTCTGGCGGATCCGCCAACAGTGTGTCCGCTCGCCGCTCCTCGGCCAA--CTTCCCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CG-AGC-AGAG---CGA------------------------------------CGA---GCCGGAG--------AACATGAGCGTCAG------TCACA------------------TGGACAGCT---------------GCAAGCAGGAGCTGGCCA------CAA---CAGA---------------------------GGCATCTGCTGCATCGGCCGC----------------------------GG--------------------------CAGCG-G---CTGCGG---------------CAGCAGCAGC---------------------GGC---------------------------------------------A--------GCGGCGTCAGCGTCAGCATCGGGA----------------------------ACTGGCGCCGG-------------------------------CTCGA---GCTCCTCGGCCAG--CTCCTCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droVir3

A---GC-AGTA---TGTTAAGATGGGGCA------------------CGCCCATCA---GCAGCAGC-------AGCAGCAGC---AA------CA---------GCA---GCAGCAGC---AGCAGCAAATGCATCAC-------------C-------------AT---C---------------------------ACCACCATC------A---------G------------------CA-G---------CAGCAGCAGCAGCA---------------GCA---------------------GC------AG-------------------------CAACAGCAGCAG-----------------------CA---------GCAGCAGC--------A---------GCA------------------------------------------G---CAAT----------------------CCTCGC---GCTCTGCAGCTAG--TCCGCTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................GCATCAC-------------C-------------AT---C---------------------------ACCACCATC------A---------G------------------CA-G---------CA........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCA------------------------------------------G---CAAT----------------------CCTCGC---GCTC..................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAAT----------------------CCTCGC---GCTCTGCAGC............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGCA------------------CGCCCATCA---GCAGCAGC-------AGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AGCAAATGCATCAC-------------C-------------AT---C---------------------------ACC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGCA------------------CGCCCATCA---GCAGCAGC-------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GTA---TGTTAAGATGGGGCA------------------CGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GGGGCA------------------CGCCCATCA---GCAGCAGC-------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................C---------------------------ACCACCATC------A---------G------------------CA-G---------CAGCAGCA..................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CAGCA---------------GCA---------------------GC------AG-------------------------CAACAGCAGCAG-----------------------CA---------....................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GCAGCAGCAGCA---------------GCA---------------------GC------AG-------------------------CAACAGCAGC........................................................................................................................................................................	29	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................A------CA---------GCA---GCAGCAGC---AGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AGCAGCAGCA---------------GCA---------------------GC------AG-------------------------CAACA.............................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---------------GCA---------------------GC------AG-------------------------CA................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................A---------------------GC------AG-------------------------CAACAGCAGCAG-----------------------CA---------GCA.................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................A---------------------GC------AG-------------------------CAACAGCAGCAG-----------------------CA---------G...................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AGCAGC---AA------CA---------GCA---GCAGCAGC---A...............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................G------------------CA-G---------CAGCAGCAGCAGCA---------------GCA---------------------GC------AG-------------------------CAA...............................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CACCATC------A---------G------------------CA-G---------CAGCAGCA..................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAG-----------------------CA---------GCAGCAGC--------A---------..........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................AA------CA---------GCA---GCAGCAGC---AGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CAGCAGCA---------------GCA---------------------GC------AG-------------------------CAACAGCA..........................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CCATCA---GCAGCAGC-------AGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CA---GCAGCAGC-------AGCAGCAGC---AA------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAG-----------------------CA---------GCAGCAGC--------....................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AA------CA---------GCA---GCAGCAGC---AGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droGri2

GC-AGC-AGCA---GCG------------------------------------GCA---GCAGCAGC-------AGCAGCAGCGGCAG------CAGCAGCAGCAGC------------------A---------------GC-------AGCG----GCAGCAGCAG------------------------------CAGCAGCAGCGGCAGCAGCAG----------------------------CAGCAG--------------------------CAGCGG----CAGCGGCAGCAGCAGCAGCAG---------C---------------------AGC------------------------------A-----------------------GCA------GCGGCAGCGGCAGCAGCAG----------CAGCGGCAGCG-------------------------------------------------------------------------GC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................................................................................................GCAG----------------------------CAGCAG--------------------------CAGCGG----CAGCG....................................................................................................................................................................................................................................	21	20	0.20	4	4	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCGGCAGCAGCAG----------CA....................................................................................	20	20	0.05	1	1	0

droWil2

A---GC-AGCA---CTA------------------------------------TCAGCAGCAGCAGC-------ATCAGCAGC---AT------CAGCA------------------GCAACAGCT---------------TCAG-CATCAGC----------AGCAG---------------------------------CAGCATCAGCAGCATCAGCCGC----------------------------A---------------------------------GCAGCAGCA---------------GC------AG---------CAGCATTAGCGGCAGC------------------------AGCAGCAGCGCCA-----------------------------ACATCAGCGGAAGC---------------------------------------------------------------------------------AGCAGCAG--CGCCAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................C-------ATCAGCAGC---AT------CAGCA------------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	1
.........................................................................................................................................................................................................CAGCATCAGCAGCATCAG...............................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	1	0
...............................................................CAGC-------ATCAGCAGC---AT------CAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	1	0
.......................................................AGCAGCAGCAGC-------ATCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
......................................................................................................................................................AGC----------AGCAG---------------------------------CAGCATCAGCA......................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.............................................................................................................................................TCAG-CATCAGC----------AGCAG---------------------------------CAGC.............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
........................................................................................................................................................C----------AGCAG---------------------------------CAGCATCAGCAGCA...................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................CGC----------------------------A---------------------------------GCAGCAGCA---------------GC------AG---------CA................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0

dp5

GC-AGC-AGCA---TGG------------------------------------GCA---GCACCATCACAGTGCAGCCGCGGT---GG------C---------------------------CGCT---GCTGCGGCGGCAG----------CC-------------G------TC-CACCACCA------------GCACCAGCAACAGCAGCAGCAGGCGC----AG------------------CAAGT---------------------------------GCA---G------------------CAGCAGCAGC---------------------AAC------------------------AGCAGCACCATCA-----------------------------------TCAGCAGCAGGTGGCTGCCGTT---------------------GC-------------------------------CATGG---CGGCCATGGCCAA--TTTGTTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................................................................................................................................................G------------------CAGCAGCAGC---------------------AAC------------------------AGCAGCA...................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................GT---------------------------------GCA---G------------------CAGCAGCAGC---------------------AAC------------------------..........................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................A---G------------------CAGCAGCAGC---------------------AAC------------------------AGCAG.....................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GCA---G------------------CAGCAGCAGC---------------------AAC------------------------AGC.......................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................CACCAGCAACAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................A---G------------------CAGCAGCAGC---------------------AAC------------------------AGCAGCA...................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GCAGCAGC---------------------AAC------------------------AGCAGCACC.................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CACCAGCAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

GG-GCA---GA---GGACGAGCCGCTCCAGAGTCGGCCGCCGGACGA------CAA---CGCGCGCG-------GCC---------AA------GG---------GGA---TCAGCAGC---CGCAGCAGCAGCCGCAG-------------C-------------AG------CAGCATCAGCA------------GCAGCAGCATC---A----------------------------------------------------GCAGCAGCGTCAGCA------GCAGCAGCA---------------GC------AC--------------------------------------------------------------------------------------------------TGG------------------------------------------------------------------------CACGG---GCC------ACAG--GGAGCCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................GGACGA------CAA---CGCGCGCG-------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0
......................................GCCGGACGA------CAA---CGCGCGCG-------GCC---------AA------GG---------.................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGCA---------------GC------AC--------------------------------------------------------------------------------------------------TGG------------------------------------------------------------------------CACGG---GCC------ACAG--G......	24	14	0.07	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGG------------------------------------------------------------------------CACGG---GCC------ACAG--GGAGC..	20	15	0.07	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------------------------------------------------------------------CACGG---GCC------ACAG--GGAGA..	19	15	0.07	1	0	1	0	0	0	0
............................................................................................................................CAGCAGCAGCCGCAG-------------C-------------AG------CAGCA.......................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................GCAGCAGCCGCAG-------------C-------------AG------CAGC........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................CAG-------------C-------------AG------CAGCATCAGCA------------GCAGCAG..............................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................AGCA------------GCAGCAGCATC---A----------------------------------------------------GCAGCAG...........................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droAna3

CG-GCCAGCAG---CGA------------------------------------CGA---GGTGG-TC-------CACATCAGCAGCAC------CCGACTGCCCTCC------------------A---------------TC-------CCGG-----------------------------------------------------------------------------AGCGCAGTGCCGCA-G---------CGGCGGCGGCAGCG---------------G------------------------C------AG-------------------------CAGCAGCAGCGG-----------------------CC---------GCCGCAGG--------A---------GCC---GCTC----------TCATGGAGCCCGGAACCGGCGCCGG-------------------------------TTCTG---GGGGAGTGGGCAG--CGGGGCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................C---------GCCGCAGG--------A---------GCC---GCTC----------TCATGGA...............................................................................	24	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAGG--------A---------GCC---GCTC----------TCATGGAGCCCGGA........................................................................	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG---GGGGAGTGGGCAG--CGGGG..	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCCGG-------------------------------TTCTG---GGGGAGTG..............	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................GCG---------------G------------------------C------AG-------------------------CAGCAGCAGCGG-----------------------CC---------....................................................................................................................................	21	7	0.29	2	0	1	0	0	0	1
.............................................................................................................................................................................................................................................................................................G------------------------C------AG-------------------------CAGCAGCAGCGG-----------------------CC---------GC..................................................................................................................................	20	7	0.14	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................CAGCG---------------G------------------------C------AG-------------------------CAGCAGCAGCGG-----------------------C..............................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................GCA-G---------CGGCGGCGGCAGCG---------------G------------------------C------A............................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................A-G---------CGGCGGCGGCAGCG---------------G------------------------C------AG-------------------------C.................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0

droBip1

GCGGAAAGTGC---CGC------------------------------------CGA---GAAGG-CC-------AGCGCCGCC---AGCAA----------------G---GCGGTGGA---GGTGACAGCAGC--------------------------------------CGGC------GAA------------------CG---------G---------G------------------TCG-CCAAGGCAGCGGCAGCCGCAGCA---------------GCAGCGGCG---------------GC------AG-------------------------------C-----AGCGC------------------AA------GTG--------GCA---------------TCTG-----------------------------------------GTGGCAGTGCCAGCTCG------------------------GCCTCGACCAC--CGCCACC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GC-ACA-GCCT---CCA------------------------------------GAC---GCAGACCA-------AGTTGCTCAAGCAA------CAGCAGGAGCAAC------------------A---------------GT-------TGCT----GCTCCAACAG------------------------------CAGCAGCAACAGCAGCAGCAG----------------------------CAACAA--------------------------CAGCAG----CAGCAGCAGCAGCAGCAACAG---------G---------------------AGC------------------------------A-----------------------TCA------CCATCACCATCATAACCAG----------CAGCAGCAGCA-----------------------------------------------------GGTCATTGTCCAGTCCCAGTTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GA-GCA-GGGGGATCCA------------------------------------CTG---GCGGCGGT-------GGCGGTGG---CCT------AGGAACAAACAGC------------------G---------------GC-------AGCG----GCAGCGG---------A---------------------------GC----------G---GTCTC-CTCATCGAGCGCAGCGCCAC---CGACGGCGG------CGACAGCA---------------GCGGCCACG---------------GC------AG-------------------------------C-----------------------G--------------------------------GGTTCGGGTTCGGGC----------------------------TCCGGATCCGG-------------------------------TTCGA---GCGTCAGCGGAGG--CTCCTCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CC-AGC-AAAG---CCA------------------------------------CAA---GCAGGACA-------AGCAGCAGCAGCAG------TAACA------GCA---GCAGTAGC---AGCGATAACTGCCAAAG-------------C-------------AG------CAACAT-------------------------------------------------------------------CTACAGCGGCAACAGCAACAACA---------------GCAGCAGCG---------------GC------AG-------------------------------C-----AACAC------------------CA------CCG--------GCA---ACA------------------------------------------------------GCAGCAATACCAGCACCACCACGACGCTGTACACGT---GCTCCAGCGCCTC--CTCGTCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CC-AGC-AAAG---CCA------------------------------------CAA---GCAGGACA-------AGCAGCAGC---AG------CAGCA---------------GTAAC---AGCGAACACAGCCAAAG-------------C-------------AG------CAACAT-------------------------------------------------------------------CTACAGCGG---CAACAGCAACA---------------GCAGCAGCG---------------GC------AG-------------------------------C-----AACAC------------------CA------CCA--------GCAAC---A------------------------------------------------------GCAGCAACACCAGCACCACCACGACGCTGTACACGT---GCTCCAGCGCCTC--CTCGTCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A---GC-AGCA---ACA------------------------------------CCAGCAGCAGCAAC-------ATCAGCAGC---AG------CAGCA------------------GCAACAGCC---------------GCAC-CATCAGC----------AGCAG---------CAGCAACAGGCGCACCATCAGCAGCAGCAACTCCACCAGCAGCAGCAA------------------CAG-CCACA---------------------------------------CCAC---------------CAGCAGCAGC---------------------CGC------------------------AGCAGCACCATCAACAGCA-----------GCA------GCAACTCCACCAGCA------------------------------------------------------------------------------CCAGCAGCACCAG--CAGCTCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CT-AGC-AAAA---CCA------------------------------------CAA---GCAGGACA-------AGCAGCAAC---AG------CAGCA------------------GCGACAGCA---GCAGCGACAG-------------C-------------AG------CAACATCAACA------------GCAACATCAAC---AACATCAG-------------------------------------------CAACAACA---------------GCAGCAGCG---------------GC------AG-------------------------------C-----AACACCGGCAACAGCAACA--------------------------------GCAATACTAGCGACA---------------------------------------GCAGCAACACCAGCACCACCACGACGCTGTACACGT---GCTCCAGCGCCTC--CTCGTCG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

A---AC-AAAG---ACA------------------------------------GCA---GCAGTGAA--AA---AAAAACAGC---GG------CAACA------------------AAGACAGCA---------------GCAGTGAAAAAC--AG-----CG---GCAACAAAA------ACA------------------GC---------A---------A------------------CAG-CCAAAACAA---------CGGCA---------------GC------------------------------AAC---------------------AAC------------------------AGCAGCAGCATCAACAGCGGCA--------GCGACGACAGCGGCAGCGACGACA----------------GCGGCAGCG--------------------------------------------ACGAC-----CAGTGCTGCCAA--CTTTTGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TC-ACC-AGCA---GCA------------------------------------GCA---GCAGCAGC-------AACATCAGCAGCAA------CAGCAGCAACAGC------------------A---------------GC-------AGCA----GCAGCATCAA------------------------------CAGCAGCAACAGCAGCAACAT----------------------------CAACAG--------------------------CAGCAG----CAGCAACATCAGCAGCAGCAG---------C---------------------AGC------------------------------A-----------------------ACA------CCACCAGCAACAGCAGCAG----------CATCATCACCA-----------------------------------------------------GCAATTTGGCCAG--------C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................CAGC-------AACATCAGCAGCAA------CAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................CAACAGC------------------A---------------GC-------AGCA----GCAGCATC....................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.C-ACC-AGCA---GCA------------------------------------GCA---GCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATCAGCAGCAA------CAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CA------------------------------------GCA---GCAGCAGC-------AACATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................AGC-------AACATCAGCAGCAA------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GCAA------CAGCAGCAACAGC------------------A---------------GC-------AGC.................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AG----CAGCAACATCAGCAGCAGCAG---------C---------------------.....................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CC-AGCA---GCA------------------------------------GCA---GCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CT-AGC-AAAA---CCA------------------------------------CAA---GCAGAACA-------AGCAGCAGC---AA------CA---------GCA---GCAGCAGC---AGCAACAACAGCGACAG-------------C-------------AG------CAACATCAACA------------GCAGCAGCAAC---A----------------------------------------------------GCAGCA---------------------GCG---------------GC------AGCAGCAGCAGCAGCAGTACCTGCAAC------------------------AGCAACACCTGCA-----------------------------------ACAGCAGCA---------------------------------------------------------------------------GCAACACCACCAG--CACCACC

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

CA-AGA-GTGC---CGA------------------------------------CGA---GGTCT-AC-------GACATCATC---GACGAGAGTCGCC---TGGAC-GCCCAGGTGGA---ACTG-----------------------------AT-----CG---TCAGCCGGC------CGA------------------TC---------G---------G------------------CA-G---------CGGCGGCGGCAGTG---------------GCGG---------------------C------AG-------------------------CAGCACCAACGT-----------------------CA---------GTCCCATC--------A---------GCG------------------------------------------GAGCCTCCGGCGGATCCGCCAACAGTGTGCCCGCTCGCCGCTCCTCGGCCAA--CTTCCCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GC-AGC-AGGG---GCA------------------------------------GCA---GCAGGGGC-------AGCAGCAGGGGCAG------CAGCAGGGGCAGC------------------A---------------GC-------AGGG----GCAGCAGCAG------------------------------GGGCAGCAGCAGGGGCAGCAG----------------------------CAGGGG--------------------------CAGCAG----CAGGGGCAGCAGCAGTGGCAG---------C---------------------AGC------------------------------A-----------------------GGG------GCAGCAGCAGTGGCAGCAG----------TAGTGGCAGCA-----------------------------------------------GGGACCATCCGG------G--GGTCCTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCAG----------TAGTGGCAGCA-----------------------------------------------GGGAC.......................	25	8	1.63	13	0	0	0	0	0	0	0	0	0	0	13
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------TAGTGGCAGCA-----------------------------------------------GGGACCATC...................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG----------TAGTGGCAGCA-----------------------------------------------GGGACCATC...................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------TAGTGGCAGCA-----------------------------------------------GGGACC......................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----------TAGTGGCAGCA-----------------------------------------------GGGACCATC...................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCA-----------------------------------------------GGGACCATCCGG------..........	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-----------------------------------------------GGGACCATCCGG------G--GGTCCT.	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGGCAGCA-----------------------------------------------GGGACCATCCGG------G--.......	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAGCAGCAGTGGCAG---------C---------------------AGC------------------------------A-----------------------GGG------...................................................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GCAGCAGTGGCAG---------C---------------------AGC------------------------------A-----------------------GGG------...................................................................................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GCAGCAGTGGCAG---------C---------------------AGC------------------------------A-----------------------GGG------G..................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCAGCAGGGGCAGCAG----------------------------CAGG...............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGCAGCAG------------------------------GGGCAGCAGCAGGGGC....................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GCAG----------------------------CAGGGG--------------------------CAGCAG----CAGG.....................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................AGC------------------A---------------GC-------AGGG----GCAGCAGCAG------------------------------GGGC................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........G---GCA------------------------------------GCA---GCAGGGGC-------AGCAGCAGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................AG------CAGCAGGGGCAGC------------------A---------------GC-------AGGG----GC..........................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AGCAG----CAGGGGCAGCAGCAGTGGCAG---------...........................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CAGCAG----CAGGGGCAGCAGCAGTGG.......................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................AGCAGCAGGGGCAG------CAGCAGGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AG---------C---------------------AGC------------------------------A-----------------------GGG------GCAGCAGCAGTGGCAG...................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CAG---------C---------------------AGC------------------------------A-----------------------GGG------GCAGCAGCAGTGG......................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CA-AGA-GTGC---CGA------------------------------------CGA---GGTCT-AC-------GACATCATC---GACGAGAGTCGCC---TGGAC-GCCCAGGTGGA---ACTG-----------------------------AT-----CG---TCAGCCGGC------CGA------------------TC---------G---------G------------------CA-G---------CGGCGGCGGCAGTG---------------GCGG---------------------C------AG-------------------------CAGCAGCAACGT-----------------------CA---------GTCCCATC--------A---------GCG------------------------------------------GAGCCTCTGGCGGATCCGCCAACAGTGTGTCCGCTCGCCGCTCCTCGGCCAA--CTTCCCG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................GAC-GCCCAGGTGGA---ACTG-----------------------------AT-----CG---T..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
..............................................................................TCATC---GACGAGAGTCGCC---TGGAC-GC............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

dmo_1016

scaffold_6496:7059194-7059277 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads