ID:

dmo_1015

 Coordinate:

scaffold_6496:6913286-6913436 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.6 -12.4 -12.3

Flybase annnotation

CDS [Dmoj\GI19355-cds]; exon [dmoj_GLEANR_4290:5]; intron [Dmoj\GI19355-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAACATTCAGGACTCTGGTTTCGATGATATGACTGAGAAGGTTTACAAAAGTAAATAACTCGTTTCGTCATTGAGTTAACACATTTAAGTTACAAACAAACACATGGAAAAAACTACAAAAATTTGATTGGTTTTTGGTTTCGAGCATTGGCCAAAAACAATTTTAGACATTTATCTACATATATATAGAGCGTGTATAACTAATTTCTTAAATCGTTTCACCTTATATCTCTCTATATATTTCTCTTTTT
******************************************************.(((((((.........)))))))((.((.(((((((.............................))))))).))))((((((((.........))))))))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
.........................................................................................................................................GTTTCGAGCATTGGCCAAAA.............................................................................................. 20 0 1 3.00 3 1 2 0
......................................................ATAACTCGTTTCGTCATTG.................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0
....ATTCAGGACTCTGGTTTCGAT.................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0
...............................................................................................................................................................................CTACATATATATAGAGCGTG........................................................ 20 0 1 1.00 1 0 0 1
.............................................CAAAAGTAAATAACTCGTTTCGTCATTG.................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0
......................................................................................................................................................................................TATATAGAGCGTGTATAACTAAT.............................................. 23 0 1 1.00 1 0 1 0
...............................................................................................................................................................................CTACATATATATAGAGCGTGTATAA................................................... 25 0 1 1.00 1 0 1 0
..........................ATATGACTGAGAAGGTTTACAAAAGTAA..................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0
........................................................................................................................................GGTTTCGAGCATTGGCCAAA............................................................................................... 20 0 1 1.00 1 0 0 1
...............................................................................................................................................................................CTACATATATATAGAGCGTGT....................................................... 21 0 1 1.00 1 0 1 0
...............................................................................................................................TTGGTTTTTGGTTTCGAGC......................................................................................................... 19 0 1 1.00 1 0 1 0
...CATTCAGGACTCTGGTTTCGATG................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................................TAACTAATTTCTTAAATCGTT................................. 21 0 1 1.00 1 1 0 0
........................................................................................................................AATTTGATTGGTTTTTGGTTTCGAGC......................................................................................................... 26 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................CGTTTCACCTTATATCTCTCT................ 21 0 1 1.00 1 1 0 0
..................................................................................ATTTAAGTTACAAACAAACACATGGAAA............................................................................................................................................. 28 0 1 1.00 1 1 0 0
............................................................................................CAAACAAACACATGGAAAAAACTACAAAA.................................................................................................................................. 29 0 1 1.00 1 1 0 0
......................................................ATAACTCGTTTCGTCATTGA................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0
................GGTTTCGATGATATGACTGAGAAGGT................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0
.........................................................................................................................................GTTTCGAGCATTGGCCAAAAA............................................................................................. 21 0 1 1.00 1 1 0 0
......................................................ATAACTCGTTTCGTCATTGAGT............................................................................................................................................................................... 22 0 1 1.00 1 0 1 0
.......................................................................TGAGTTAACACATTTAAGT................................................................................................................................................................. 19 0 1 1.00 1 0 1 0
..........................................................................................................................................TTTCGAGCATTGGCCAAAAA............................................................................................. 20 0 1 1.00 1 0 0 1
........................................................AACTCGTTTCGTCATTGAGT............................................................................................................................................................................... 20 0 1 1.00 1 0 0 1
..................................GAGAAGGTTTACAAAAGTAAATA.................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0
......................GATGATATGACTGAGAAGGT................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0
......................................................................TTGAGTTAACACATTTAAGT................................................................................................................................................................. 20 0 1 1.00 1 1 0 0
..............................GACTGAGAAGGTTTACAAAAGTAA..................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
.........................................................................................................................................GTTTCGAGCATTGGCCAAAAAC............................................................................................ 22 0 1 1.00 1 0 0 1
........................................................................................................................AATTCGATTGGTTTTTGGT................................................................................................................ 19 1 2 0.50 1 0 1 0
.........................GATATGATTGAGAAGGATT............................................................................................................................................................................................................... 19 2 6 0.17 1 1 0 0
...............................................................................................................AACGATAAAAGTTTGATTGGT....................................................................................................................... 21 3 9 0.11 1 1 0 0
.........................GATATGATTGAGAAGGAT................................................................................................................................................................................................................ 18 2 15 0.07 1 0 1 0

Anti-sense strand reads

CTTGTAAGTCCTGAGACCAAAGCTACTATACTGACTCTTCCAAATGTTTTCATTTATTGAGCAAAGCAGTAACTCAATTGTGTAAATTCAATGTTTGTTTGTGTACCTTTTTTGATGTTTTTAAACTAACCAAAAACCAAAGCTCGTAACCGGTTTTTGTTAAAATCTGTAAATAGATGTATATATATCTCGCACATATTGATTAAAGAATTTAGCAAAGTGGAATATAGAGAGATATATAAAGAGAAAAA
**********************************************************************************************.(((((((.........)))))))((.((.(((((((.............................))))))).))))((((((((.........))))))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:6913236-6913486 - dmo_1015 GAACATTCAGGACTCTGGTTTCGATGATATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTTCGTCATTGAGTTAA------------------------------------------CACAT-TTAAGTTACAAA-CAAACACATGGAAA-AAACTACAAA------AATTTGATT-GG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AAAAA-CAAT--------------TTTAGACATTTATCTACATATATATAGAGCGTGT-ATAA-C-----TAATTTCTTA-------AATCGTTTC-ACCTTA-----TATCTCTC--T-------ATATATTTCTCTTTTT-----
droVir3 scaffold_12875:13476198-13476399 - dvi_6696 GAACATTCAGGACTCCGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTTCGTCATT--------------------------------------------GAGTTAACGT-TTAAGTTGAAAATTGA---------AACAAACT--GAA------AAT---TTGTTG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AA-AA----C--------------TTTAGACAT------------ATG--TAGACCGT-GTAT-TTG-AGTAA----------------CGTTTTCT-T--------AAATCTCTC--TT-----------------TTTTT-----
droGri2 scaffold_15245:17757285-17757495 + GAACATTCAGGACTCGAGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTCCGTCATT--------------------------------------------GAGTTTACAT-TTAAGTTGAAAAAAGAAAACAA-GAAA-AA-------A------C---AAAATATG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AAAAA-------------------CTTAGACAT--------------A--TAGACCGT-GTAA-TTGAAATAACATTTTA-------AACGTTTC--AT---CTT--ATATCTCTC--TT--------------------TT-----
droWil2 scf2_1100000004510:2211102-2211380 + dwi_438 GAACATTCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTTACCTAACAAAACAATGAAACCAACAACAAAAAGAAAAAAATAAGAGTTTACTT-ATAAGTTGAGA--------------------------------------------GAATATTTTGGTTC-CA-----TTT--GT---AATTGGCC-CAAAAACAAACAAACAAACAAACACTTATTCT------------------AGATCTTA-GTGATTTG-CATAATTTCCAAACAAAAAAACGTT-TCCAT---CTT--TAATATCTC--TT-TCTGCATACATTTCGTTCTAT-----
dp5 3:2503739-2503929 + GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAC-------------------------------------GGTTTCTG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-AA-TA-------------------CATAGA--------------------TAGCCTTA-ATAT-TTG-AGTAATTTCTAA-------CACGTTCTTCGT---ACT------CTCTC--T---------------------TT-----
droPer2 scaffold_2:2692893-2693083 + GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAC-------------------------------------GGTTTCTG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-AA-TA-------------------CATAGA--------------------TAGCCTTA-ATAT-TTG-AGTAATTTCAAA-------CACGTTCTTCGT---ACT------CTCTC--T---------------------TT-----
droAna3 scaffold_13266:17646310-17646529 - dan_2082 GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------ACAAAAAAAC-CCATTGTG---CTTTTGGTTC-GA-----TTC--ACCAAAATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTTAATAA-TTG-AGTAACTTCTAA-------CGCGTTTTCCTT---CAA--CCATCTCTC--TC---------------ACTCTCT-----
droBip1 scf7180000396735:914540-914755 - GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTCAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A--AAAACAC-CCATTGTG---CTTTTGGTTC-GA-----TTCCCAC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTTAATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCTT---CAA--CCATCTCTC--TC---------------ACTCTCT-----
droKik1 scf7180000302682:422992-423234 + GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCTTTTTG--ATCCACCAAA---AAC-----------------------AAACAAAAGAGTTTACTTTTTAAGTTGAAAAACAAAC--AA-AAAACACACA--AAA------CAC----TTGTG---CTTTTGGTTC-CAAAACATT---TA----ATTGGCC-CAAAA----C--------------CTTAGACCT-----------------TAGACTTA-ATAA-CTG-AGTTACTTCTAA-------CGCGTTCTCCGT---ACTCTCCCTCTCTC--TT-------------------TTT-----
droFic1 scf7180000453811:250025-250228 - GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTGCA-CTTTTGGTTC-CA-----ACC--AT----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAACTTCTAA-------CGCGTTCTCCGT---TAA--CCATCTCTC--TT-C------------------CT-----
droEle1 scf7180000491228:254938-255144 - GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAC--------------------------ACA----CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCCCAA-AA-------------------CTTAGACGT--------------T--TAGCCCTT-ACAA-TTG-AGTAA-TTCTAA-------CGCGTTCTCCGT---ACC--TCATCTCTC--TT-C-----------------CAT-----
droRho1 scf7180000766409:44695-44898 - GAACATCCAGGACTCTGGCTTTGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCCCAA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAACTTCTAA-------CGCGTTCTCCGT---AAC--TCATCTCTC--TT-C-----------------CAT-----
droBia1 scf7180000302292:1678208-1678411 - CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CC-----AAC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-CTG-AGTAACTTCTAA-------CGCGTTCTCCGT---ACC--CCATCTCTCTCTT-C------------------TA-----
droTak1 scf7180000415991:143148-143355 + CAACATCCAGGACTCTGACTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC------------------------------------CGAAAGAGTTTACTT-TTAAGTTAAAA--------------------------A------CAC----TTGTG---CTTTTGGTTCACA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAACTTCTAA-------CGCGTTCTCCGT---ACC--CCATCTCTC--TCTC--------------CTTTTT-----
droEug1 scf7180000409663:638555-638756 - GAACATCCAGGACTCTGGCTTTGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ACC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-CTG-AGTAATTTCTAA-------CGCGTTCTCCGT---ACT--CCATCTCTC--TT-C------------------CC-----
dm3 chr2R:14708739-14708937 + TAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTA---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT---------------------------
droSim2 2r:15357062-15357260 + CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT---------------------------
droSec2 scaffold_1:12216871-12217081 + dse_731 CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT-C--------------CTATATGCCGC
droYak3 2R:14487264-14487462 - CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT---------------------------
droEre2 scaffold_4845:8900602-8900802 + der_1080 CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TC--------------------TT-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAACATTCAGGACTCTGGTTTCGATGATATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTTCGTCATTGAGTTAA------------------------------------------CACAT-TTAAGTTACAAA-CAAACACATGGAAA-AAACTACAAA------AATTTGATT-GG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AAAAA-CAAT--------------TTTAGACATTTATCTACATATATATAGAGCGTGT-ATAA-C-----TAATTTCTTA-------AATCGTTTC-ACCTTA-----TATCTCTC--T-------ATATATTTCTCTTTTT-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................GTTT-CG-----AGC--------ATTGGCC-AAAA...............................................................................................................................................2013.003100002
......................................................ATAACTC--GTTTCGTCATTG.........................................................................................................................................................................................................................................................................................................1912.002200000
....ATTCAGGACTCTGGTTTCGAT...........................................................................................................................................................................................................................................................................................................................................................2112.002200000
......................................................................................................................................................................................................................................................................CTACATATATATAGAGCGTG..........................................................................................2011.001000010
.............................................CAAAAGTAAATAACTC--GTTTCGTCATTG.........................................................................................................................................................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................................................................TATATAGAGCGTGT-ATAA-C-----TAAT.........................................................................2311.001000001
......................................................................................................................................................................................................................................................................CTACATATATATAGAGCGTGT-ATAA-...................................................................................2511.001000001
..........................ATATGACTGAGAAGGTTTACAAAAGTAA..............................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................GGTTT-CG-----AGC--------ATTGGCC-AAA................................................................................................................................................2011.001000010
......................................................................................................................................................................................................................................................................CTACATATATATAGAGCGTGT-........................................................................................2111.001000001
....................................................................................................................................................................................TT-GG---TTTTTGGTTT-CG-----AGC--------...........................................................................................................................................................1911.001000001
...CATTCAGGACTCTGGTTTCGATG..........................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................TAA-C-----TAATTTCTTA-------AATCGTT.....................................................2111.001100000
.............................................................................................................................................................................AATTTGATT-GG---TTTTTGGTTT-CG-----AGC--------...........................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................................................................CGTTTC-ACCTTA-----TATCTCTC--T-------.....................2111.001100000
..............................................................................................................................AT-TTAAGTTACAAA-CAAACACATGGAAA-.......................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................CAAA-CAAACACATGGAAA-AAACTACAAA------A......................................................................................................................................................................................................2911.001100000
......................................................ATAACTC--GTTTCGTCATTGA........................................................................................................................................................................................................................................................................................................2011.001100000
................GGTTTCGATGATATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................GTTT-CG-----AGC--------ATTGGCC-AAAAA-.............................................................................................................................................2111.001100000
......................................................ATAACTC--GTTTCGTCATTGAGT......................................................................................................................................................................................................................................................................................................2211.001000001
.........................................................................TGAGTTAA------------------------------------------CACAT-TTAAGT.............................................................................................................................................................................................................................................1911.001000001
...................................................................................................................................................................................................TTT-CG-----AGC--------ATTGGCC-AAAAA-.............................................................................................................................................2011.001000010
........................................................AACTC--GTTTCGTCATTGAGT......................................................................................................................................................................................................................................................................................................2011.001000010
..................................GAGAAGGTTTACAAAAGTAAATA...........................................................................................................................................................................................................................................................................................................................2311.001000001
......................GATGATATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2011.001000001
........................................................................TTGAGTTAA------------------------------------------CACAT-TTAAGT.............................................................................................................................................................................................................................................2011.001100000
..............................GACTGAGAAGGTTTACAAAAGTAA..............................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................GTTT-CG-----AGC--------ATTGGCC-AAAAA-C............................................................................................................................................2211.001000010
droVir3
GAACATTCAGGACTCCGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTTCGTCATT--------------------------------------------GAGTTAACGT-TTAAGTTGAAAATTGA---------AACAAACT--GAA------AAT---TTGTTG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AA-AA----C--------------TTTAGACAT------------ATG--TAGACCGT-GTAT-TTG-AGTAA----------------CGTTTTCT-T--------AAATCTCTC--TT-----------------TTTTT-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................ATAACTC--GTTTCGTCATT--------------------------------------------GAGT..........................................................................................................................................................................................................................................................2214.004001300000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................T---TTGTTG---TTTTTGGTTT-CG-----AG....................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000004
...................................................................................................................................................................................TTGTTG---TTTTTGGTTT-CG-----AG....................................................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000004
.......................................................................................................................................TGAAAATTGA---------AACAAACT--GAA------AAT---T................................................................................................................................................................................................2513.003000300000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TTAGACAT------------ATG--TAGACCGT-GT......................................................................................2113.003000000102000000000000000000000000000000000000000000000000000000
........................................................................TT--------------------------------------------GAGTTAACGT-TTAAGTTGAAA........................................................................................................................................................................................................................................2312.002000000001000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................A----C--------------TTTAGACAT------------ATG--TAGACCGT-GT......................................................................................2412.002000000000000000001000000000000000000000000000000000000000000010
........................................................................................................................GTTAACGT-TTAAGTTGAAAATTGA---------AAC.......................................................................................................................................................................................................................2712.002000200000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AAT---TTGTTG---TTTTTGGTTT-CG-----AGC--------...........................................................................................................................................................2412.002000200000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GT-GTAT-TTG-AGTAA----------------CGTTTTCT-.................................................2212.002000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................TT-CG-----AGC--------ATTGGCC-AA-AA----C--------------TTTAGAC....................................................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
....................................................AAATAACTC--GTTTCGTCATT--------------------------------------------GAGT..........................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTTAGACAT------------ATG--TAGACCGT-G.......................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................G--TAGACCGT-GTAT-TTG-AGTA...........................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TG---TTTTTGGTTT-CG-----AGC--------ATTGGC.....................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....TTCAGGACTCCGGCTTCGATGACATGACTGAGAAGG...........................................................................................................................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000001000000000000000000000
.....TTCAGGACTCCGGCTTCGATGACA.......................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
GAACATTCAGGACTCCGG..................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................A-AA----C--------------TTTAGACAT------------ATG--TAGACCGT-GTAT-T..................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AGTTGAAAATTGA---------AACAAACT--GAA------AAT---T................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GACCGT-GTAT-TTG-AGTAA----------------CGTT......................................................2211.001000000000000000000000010000000000000000000000000000000000000000
....ATTCAGGACTCCGGCTTCGATGAC........................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................TT-CG-----AGC--------ATTGGCC-AA-AA----C--------------C..........................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GACAT------------ATG--TAGACCGT-GT......................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................TAGACCGT-GTAT-TTG-AGTAA----------------CGTT......................................................2411.001000000000000000000000000000000000000000000000000000000000001000
........................TGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................TG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-...................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..........................................................CTC--GTTTCGTCATT--------------------------------------------GAGTTAA.......................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................A-AA----C--------------TTTAGACAT------------ATG--TAGACCGT-........................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
............................................................C--GTTTCGTCATT--------------------------------------------GAGTTA........................................................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................AT---TTGTTG---TTTTTGGTTT-CG-----AGC--------...........................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................GACATGACTGAGAAGGTTTACAAAAGT................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACTGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................TTGA---------AACAAACT--GAA------AAT---TTGT.............................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.......................ATGACATGACTGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2011.001000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................GTTG---TTTTTGGTTT-CG-----AGC--------...........................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.......................ATGACATGACTGAGAAGGTTTACAAAA..................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................G---TTTTTGGTTT-CG-----AGC--------ATTG.......................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GAGTTAACGT-TTAAGTTGAAAATTGA---------AAC.......................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACTGAGAAGT...........................................................................................................................................................................................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
.....TTCAGGACTCCGGCTTCGATG..........................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................A-AA----C--------------TTTAGACAT------------ATG--TAGACCGT-GT......................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TTTTGGTTT-CG-----AGC--------ATTGG......................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............CTCCGGCTTCGATGACAT......................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................TTGGCC-AA-AA----C--------------TTTAGACAT------------ATG--T................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTGGTTT-CG-----AGC--------ATTGGCC-...................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................GTTT-CG-----AGC--------ATTGGCC-AA-A...............................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
................GGCTTCGATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TG--TAGACCGT-GTAT-TTG-AGTAA----------------CGTT......................................................2611.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................TGTTG---TTTTTGGTTT-CG-----AGC--------...........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................TTTGGTTT-CG-----AGC--------ATTGGC.....................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
GAACATTCAGGACTCCGGCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AT-TTG-AGTAA----------------CGTTTTCT-T--------AAATCTCTC--T............................2911.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................T--------------------------------------------GAGTTAACGT-TTAAGTT............................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
..........................ACATGACTGAGAAGGTTTAC......................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................AT------------ATG--TAGACCGT-GTAT-TTG-A..............................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
........................................................AACTC--GTTTCGTCATT--------------------------------------------GAGT..........................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................AT---TTGTTG---TTTTTGGTTT-CG-----AGC--------ATTGGC.....................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
......................................................ATAACTC--GTTTCGTCATT--------------------------------------------GAG...........................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.......CAGGACTCCGGCTTCGATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000000000000000000000010000
.....TTCAGGACTCCGGCTTCGATGA.........................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................TG---TTTTTGGTTT-CG-----AGC--------ATTG.......................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GC--------ATTGGCC-AA-AA----C--------------TTTAGAC....................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AA-................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................CGATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...................................AGAAGGTTTACAAAAGTA...............................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................G---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AA-A...............................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTT-CG-----AGC--------ATTGGCC-AA-AA----C--------------T..........................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................TTGGTTT-CG-----AGC--------ATTGGCC-AA-AA----C--------------TT.........................................................................................................................2611.001000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AAACT--GAA------AAT---TTGTTG---TTTTTT..................................................................................................................................................................................2320.501000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AAT---TTGTTG---TTTTTGGTT...............................................................................................................................................................................1830.331000000000000000000000000000000000000000000000000000000000001000
droGri2
GAACATTCAGGACTCGAGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAACTC--GTTCCGTCATT--------------------------------------------GAGTTTACAT-TTAAGTTGAAAAAAGAAAACAA-GAAA-AA-------A------C---AAAATATG---TTTTTGGTTT-CG-----AGC--------ATTGGCC-AAAAA-------------------CTTAGACAT--------------A--TAGACCGT-GTAA-TTGAAATAACATTTTA-------AACGTTTC--AT---CTT--ATATCTCTC--TT--------------------TT-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............GAGCTTCGATGACATGACTGAGAA.............................................................................................................................................................................................................................................................................................................................................2411.00110
.................................................................................................................................................................................AAAATATG---TTTTTGGTTT-CG-----AG....................................................................................................................................................................2211.00110
................AGCTTCGATGACATGACTGAG...............................................................................................................................................................................................................................................................................................................................................2111.00110
....................................................................................................................................................................................................................................AA-------------------CTTAGACAT--------------A--TAGACCGT-GTAA-T..................................................................................2511.00101
droWil2
GAACATTCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTTACCTAACAAAACAATGAAACCAACAACAAAAAGAAAAAAATAAGAGTTTACTT-ATAAGTTGAGA--------------------------------------------GAATATTTTGGTTC-CA-----TTT--GT---AATTGGCC-CAAAAACAAACAAACAAACAAACACTTATTCT------------------AGATCTTA-GTGATTTG-CATAATTTCCAAACAAAAAAACGTT-TCCAT---CTT--TAATATCTC--TT-TCTGCATACATTTCGTTCTAT-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................AGAGTTTACTT-ATAAGTTGAGA--------------------------------------------GA..........................................................................................................................................................................................2414.00400040
........................................................................................................................GTTTACTT-ATAAGTTGAGA--------------------------------------------............................................................................................................................................................................................1913.00300030
......................GATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2022.50500050
....................................................................................................................AAGAGTTTACTT-ATAAGTTGAGA--------------------------------------------GA..........................................................................................................................................................................................2512.00200020
......................................................................................................AAAAAGAAAAAAATAAGAGT..........................................................................................................................................................................................................................................................2012.00200020
.......................................................................................................................AGTTTACTT-ATAAGTTGAGA--------------------------------------------GA..........................................................................................................................................................................................2212.00200020
..........................................................................................................................TTACTT-ATAAGTTGAGA--------------------------------------------G...........................................................................................................................................................................................1812.00200020
.....................................................AATAGCTCTCGTTTTG--AT...........................................................................................................................................................................................................................................................................................................1812.00200020
..........................................................................................................................TTACTT-ATAAGTTGAGA--------------------------------------------GA..........................................................................................................................................................................................1912.00201010
..........................................................................................................................TTACTT-ATAAGTTGAGA--------------------------------------------GAATATTTT...................................................................................................................................................................................2612.00200020
....................................................................................................................................AGTTGAGA--------------------------------------------GAATATTTTGGT................................................................................................................................................................................2012.00200020
.......................ATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2021.50300030
..........................................................................................................................................................................................ATATTTTGGTTC-CA-----TTT--GT---............................................................................................................................................................1911.00100010
...................................................................TG--ATTTACCTAACAAAACAATGAAACC....................................................................................................................................................................................................................................................................................2711.00101000
............................................................................................................................................................................................................................................................ATTCT------------------AGATCTTA-GTGAT...................................................................................1811.00110000
.........................................................................................................................TTTACTT-ATAAGTTGAGA--------------------------------------------GA..........................................................................................................................................................................................2011.00100010
.................................................................................................................................ATAAGTTGAGA--------------------------------------------GAATATTTTGGTTC-.............................................................................................................................................................................2511.00100010
.......................................................................................................................................................................................................................................................CACTTATTCT------------------AGATCTTA-GT......................................................................................2011.00100010
.AACATTCAGGACTCTGGCTTCC.............................................................................................................................................................................................................................................................................................................................................................2211.00110000
........................................................................................................................................................................................................A-----TTT--GT---AATTGGCC-CAAA...............................................................................................................................................1811.00100010
....................................................................................................................................................................................................................................................................................GATCTTA-GTGATTTG-CATA...........................................................................1911.00100010
........................................................................................................................................................................................................A-----TTT--GT---AATTGGCC-CAAAAAC............................................................................................................................................2111.00100010
.................................................................................................................................ATAAGTTGAGA--------------------------------------------GAATATTTTGGTTC-C............................................................................................................................................................................2611.00100010
GAACATTCAGGACTCTGGC.................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......................................................ATAGCTCTCGTTTTG--ATTTACCT.....................................................................................................................................................................................................................................................................................................2311.00100010
..........................................TTACAAAAGTAAATAGCTCTCGT...................................................................................................................................................................................................................................................................................................................2311.00100100
.................................................................................................................................ATAAGTTGAGA--------------------------------------------GAATATTTT...................................................................................................................................................................................2011.00100010
......................................................................................................................................TTGAGA--------------------------------------------GAATATTTTGGT................................................................................................................................................................................1811.00100010
........................................................................................................................................................................................................................................................................................................................................................T-TCTGCATACATTTCGTTCT.......2021.00200020
....ATTCAGGACTCTGGCTTCGA............................................................................................................................................................................................................................................................................................................................................................2011.00100010
.............................................................................................................................CTT-ATAAGTTGAGA--------------------------------------------GAATATTTT...................................................................................................................................................................................2311.00100010
......................................................................................................................GAGTTTACTT-ATAAGTTGAGA--------------------------------------------GAAT........................................................................................................................................................................................2511.00100010
..........................................................................................................................................................................................ATATTTTGGTTC-CA-----TTT--GT---AATT........................................................................................................................................................2311.00100010
.......CAGGACTCTGGCTTCGATGACAT......................................................................................................................................................................................................................................................................................................................................................2311.00100010
....ATTCAGGACTCTGGCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................................................................................................................GTTTACTT-ATAAGTTGAGA--------------------------------------------GA..........................................................................................................................................................................................2111.00100010
.................................................................................................................................ATAAGTTGAGA--------------------------------------------GAATATTT....................................................................................................................................................................................1911.00100010
...............................................................................................................................T-ATAAGTTGAGA--------------------------------------------GAATATTTTGGTTC-C............................................................................................................................................................................2711.00100010
....................................................................................................ACAAAAAGAAAAAAATAAGAGT..........................................................................................................................................................................................................................................................2211.00100010
.................................................AGTAAATAGCTCTCGTTTTG--.............................................................................................................................................................................................................................................................................................................2011.00100010
..........................................TTACAAAAGTAAATAGCTCT......................................................................................................................................................................................................................................................................................................................2011.00100010
.........GGACTCTGGCTTCGATGACATGACCGA................................................................................................................................................................................................................................................................................................................................................2711.00100010
................................................................................................AACAACAAAAAGAAAAAAATAAGAGT..........................................................................................................................................................................................................................................................2611.00100010
.....................................................................................................................AGAGTTTACTT-ATAAGTTGA..........................................................................................................................................................................................................................................2011.00100010
.......................................................................................................................................TGAGA--------------------------------------------GAATATTTTGGTTC-C............................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................................................................ATTCT------------------AGATCTTA-GTGATTTG-C..............................................................................2211.00100010
...........................................TACAAAAGTAAATAGCTCTCGT...................................................................................................................................................................................................................................................................................................................2211.00100100
.............................................................................................................................................................................................................................................................TTCT------------------AGATCTTA-GTGATTTG-C..............................................................................2111.00100010
.AACATTCAGGACTCTGGCTTC..............................................................................................................................................................................................................................................................................................................................................................2111.00100010
...................................................................................................................................AAGTTGAGA--------------------------------------------GAATATTTTGGTTC-.............................................................................................................................................................................2311.00100010
............CTCTGGCTTCGATGACATG.....................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................................................................................................................................................................TTTTGGTTC-CA-----TTT--GT---AATT........................................................................................................................................................2011.00100010
.......................................................................................................................................................................................................................................................................................CTTA-GTGATTTG-CATAATTTCC.....................................................................2211.00100010
...................TTCGATGACATGACCGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................2521.00201010
..............................................................................................................................TT-ATAAGTTGAGA--------------------------------------------GAATA.......................................................................................................................................................................................1811.00100010
...............................................AAAGTAAATAGCTCTCGTTTTG--ATT..........................................................................................................................................................................................................................................................................................................2511.00100010
GAACATTCAGGACTCTGG..................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................................TCCAT---CTT--TAATATCTC--TT-TCTGCA....................2511.00101000
............................................................................................................................................................................................................................................................ATTCT------------------AGATCTTA-GTGATTT.................................................................................2011.00100010
................................................AAGTAAATAGCTCTCGTTTTG--.............................................................................................................................................................................................................................................................................................................2111.00100010
.......................ATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................1921.00200020
...........................................................................................................................................................................................................................................................TATTCT------------------AGATCTTA-GTGATTTG-CA.............................................................................2411.00110000
...............................................................................................................................................................................................................TT--GT---AATTGGCC-CAAAAACA...........................................................................................................................................2011.00100010
....................................................................................................................AAGAGTTTACTT-ATAAGTT............................................................................................................................................................................................................................................1911.00100010
.................................................................................................................................ATAAGTTGAGA--------------------------------------------GAATATTTTG..................................................................................................................................................................................2111.00100010
.......................................................TAGCTCTCGTTTTG--ATTTAC.......................................................................................................................................................................................................................................................................................................2011.00100010
....................................................................................................................................................................................................................................................AAACACTTATTCT------------------AGATCTTA-GT......................................................................................2311.00100010
...............................................................................................................................................................................................................TT--GT---AATTGGCC-CAAAAACAAACAAACAA..................................................................................................................................2911.00101000
..............CTGGCTTCGATGACATGACC..................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................AACACTTATTCT------------------AGATCTTA-GT......................................................................................2211.00100010
....ATTCAGGACTCTGGCTTCGATGACA.......................................................................................................................................................................................................................................................................................................................................................2511.00100010
........................................................................................................................................GAGA--------------------------------------------GAATATTTTGGTTC-.............................................................................................................................................................................1811.00100010
.................................................................................................................................ATAAGTTGAGA--------------------------------------------GAATATTTTGGTTC-CA-----......................................................................................................................................................................2711.00100010
.................................................................................................................................................................................................................................................AACAAACACTTATTCT------------------AGATCT...........................................................................................2220.50100010
...................................................................................................................................................................................................................................................................................................................................T---CTT--TAATATCTC--TT-TCTGCATACATT..............2720.50101000
...............................................................................................................................................................................................................................................................................................................................................TATCTC--TT-TCTGCATACATTTCGTTC........2620.50101000
...................TTCGATGACATGACCGAGA..............................................................................................................................................................................................................................................................................................................................................1920.50100010
..........................................................................................................................................................................................................................................................................................................................................................TCTGCATACATTTCGTTCTA......2020.50100010
......................GATGACATGACCGAGAAGG...........................................................................................................................................................................................................................................................................................................................................1920.50100100
....................TCGATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2220.50100010
.................GCTTCGATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2620.50100010
.................................CGAGAAGGTTTACAAAAGTA...............................................................................................................................................................................................................................................................................................................................2020.50100010
.....................CGATGACATGACCGAGAAGGTTTAC......................................................................................................................................................................................................................................................................................................................................2520.50100010
.........................GACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................1820.50100010
......................GATGACATGACCGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................2220.50100010
............................................................................................................................................................................................................................................................................................................................................TAATATCTC--TT-TCTGCATACATTTCGTTC........2920.50101000
............................................................................................................................................................................................................................................................................................................................................TAATATCTC--TT-TCTGCATACATTTCGT..........2720.50101000
.....................CGATGACATGACCGAGAAGGTTTACA.....................................................................................................................................................................................................................................................................................................................................2620.50100010
.....................CGATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2220.50100010
.........................GACATGACCGAGAAGGTTTACAAAAGTA...............................................................................................................................................................................................................................................................................................................................2820.50101000
...............................................................................................................................................................................................................................................CAAACAAACACTTATTCT------------------AGATCTTA-........................................................................................2620.50100010
.......................................................................................................................................................................................................................................................................................................................................CTT--TAATATCTC--TT-TCTGC.....................1920.50100010
......................GATGACATGACCGAGAAGGA..........................................................................................................................................................................................................................................................................................................................................2020.50100010
...............................................................................................................................................................................................................................................................................................................................................TATCTC--TT-TCTGCATACATTTCGTTCTAT-----2920.50101000
....................................................................................................................................................................................................................................................................................................................................................C--TT-TCTGCATACATTTCGTT.........2020.50101000
................................................................................................................................................................................................................................................AAACAAACACTTATTCT------------------AGAT.............................................................................................2120.50100010
.................GCTTCGATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2520.50100010
dp5
GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAC-------------------------------------GGTTTCTG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-AA-TA-------------------CATAGA--------------------TAGCCTTA-ATAT-TTG-AGTAATTTCTAA-------CACGTTCTTCGT---ACT------CTCTC--T---------------------TT-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................GA--------------------TAGCCTTA-ATAT-TTG-AGTA...........................................................................2113.0030000300000
......................................................ATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGA............................................................................................................................................................................................................................................................2813.0030030000000
......................................................................................................................................................................................CTG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-A..................................................................................................................................................2612.0020110000000
..................................................................................................................................................................................................................................A-TA-------------------CATAGA--------------------TAGCCTTA-ATAT-TTG-AGT............................................................................2712.0020110000000
......................................................ATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAG.............................................................................................................................................................................................................................................................2712.0020010100000
......................GATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2112.0020000200000
..........GACTCTGCCTTCGATGACAT......................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................CGATGACATGACCGAGAAGGTTTAC......................................................................................................................................................................................................................................................................................................................................2511.0010010000000
........................................................AGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGA............................................................................................................................................................................................................................................................2611.0010100000000
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAA..............................................................................................................................................................................................................................................................2811.0010000100000
.....................CGATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..................CTTCGATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2411.0010000100000
..........................................TTACAAAAGTAAATAGCTCTCGT...................................................................................................................................................................................................................................................................................................................2311.0010010000000
.............TCTGCCTTCGATGACATGACCGAGA..............................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........GACTCTGCCTTCGATGACATGACCGA................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..................................................................................................................................................................................................................................A-TA-------------------CATAGA--------------------TAGCCTTA-ATAT-TTG-AGC............................................................................2711.0010010000000
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------A..................................................................................................................................................................................................................................................................2311.0010010000000
.................................................................................................................................................................................GGTTTCTG---ATTTTGGTTC-CA-----ATC--A------CT........................................................................................................................................................2611.0010010000000
.........................................................................................................................TTTACTT-TTAAGTTGAAC-------------------------------------G..................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................TTACTT-TTAAGTTGAAC-------------------------------------GGTTTCC............................................................................................................................................................................................2411.0010010000000
...........................................................................................................................................................................................................................................................................................................TTCTAA-------CACGTTCTTCGT---ACT------CT..................................2311.0010000000100
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------...................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................C-AA-TA-------------------CATAGA--------------------TAGCCTTA-........................................................................................1911.0010100000000
.....TTCAGGACTCTGCCTTCGATGACATG.....................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................................................ATTTCTAA-------CACGTTCTTCG.................................................1911.0010100000000
..............CTGCCTTCGATGACATGACCGAGAAGGC..........................................................................................................................................................................................................................................................................................................................................2811.0010010000000
........................................................................................................................................................................................................................................................................................................AATTTCTAA-------CACGTTCTTCGT---ACT------CTC.................................2711.0010010000000
..............................................................................................................................................................................................................................................................................................AT-TTG-AGTAATTTCTAA-------CACGT.......................................................2211.0010010000000
..ACATTCAGGACTCTGCCTTC..............................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..................................................GTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAA................................................................................................................................................................................................................................................................2811.0010010000000
.................................................................................................................................................................................................GGTTC-CA-----ATC--A------CTGGCC-AA-TA-------------------CATA.......................................................................................................................2511.0010100000000
.......................................................................................................................................................................................TG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-A..................................................................................................................................................2511.0010100000000
.......CAGGACTCTGCCTTCGATGAC........................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.........................................................GCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGA............................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................A--------------------TAGCCTTA-ATAT-TTG-AGT............................................................................1911.0010010000000
.........................................................................................................................................AAC-------------------------------------GGTTTCTG---ATTTTGGTT...............................................................................................................................................................................2011.0010010000000
droPer2
GAACATTCAGGACTCTGCCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAC-------------------------------------GGTTTCTG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-AA-TA-------------------CATAGA--------------------TAGCCTTA-ATAT-TTG-AGTAATTTCAAA-------CACGTTCTTCGT---ACT------CTCTC--T---------------------TT-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
GAACATTCAGGACTCTGCCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................25110.00101000000
..........................................................................................................................TTACTT-TTAAGTTGAAC-------------------------------------GGTTTCTG---AT......................................................................................................................................................................................2713.003300000
...CATTCAGGACTCTGCCTTC..............................................................................................................................................................................................................................................................................................................................................................1913.003300000
..........GACTCTGCCTTCGATGACATGACCGA................................................................................................................................................................................................................................................................................................................................................2613.003300000
..ACATTCAGGACTCTGCCTT...............................................................................................................................................................................................................................................................................................................................................................1912.002200000
....ATTCAGGACTCTGCCTTCGATGACATGAC...................................................................................................................................................................................................................................................................................................................................................2912.002200000
..........................................................................................................................................AC-------------------------------------GGTTTCTG---ATTTTGGTTC-C............................................................................................................................................................................2112.002200000
....................................................................................................................................................................................TTCTG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-AA-................................................................................................................................................2912.002200000
........................................................................................................................................................................................................................................................................................................AATTTCAAA-------CACGTTCTTCGT---ACT------CT..................................2612.002200000
GAACATTCAGGACTCTGCC.................................................................................................................................................................................................................................................................................................................................................................1912.002200000
..................................................................................................................................TAAGTTGAAC-------------------------------------GGTTTCTG---ATTTTGGTTC-C............................................................................................................................................................................2912.002200000
..................................................................................................................................................................................................................................A-TA-------------------CATAGA--------------------TAGCCTTA-ATAT-TTG-AGT............................................................................2712.002002000
..ACATTCAGGACTCTGCCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................2312.002200000
................................................................................................................................................................................................................................................................................................................A-------CACGTTCTTCGT---ACT------CTCTC--T---------------------.......2212.002200000
.....................................................................................................................................................................................TCTG---ATTTTGGTTC-CA-----ATC--A------C.........................................................................................................................................................2112.002200000
..ACATTCAGGACTCTGCCTTCGATG..........................................................................................................................................................................................................................................................................................................................................................2412.002200000
...................................................................................................................................................................................................................................................................................................G-AGTAATTTCAAA-------CACGTTCTTCG.................................................2411.001001000
...........................................................................................................................................C-------------------------------------GGTTTCTG---ATTTTGGTTC-CA-----ATC--.................................................................................................................................................................2411.001010000
........................................................................................................................................................................................................A-----ATC--A------CTGGCC-AA-TA-------------------CATAGA--------------------.................................................................................................2111.001001000
...CATTCAGGACTCTGCCTT...............................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................................................................................AAC-------------------------------------GGTTTCTG---ATTTTGGTTC-C............................................................................................................................................................................2211.001100000
......................................................ATAGCTCTCGTTTTG--ATTAAC------------------------------------A..................................................................................................................................................................................................................................................................2211.001001000
...............................................................................................................................................................................................................................................................................................................AA-------CACGTTCTTCGT---ACT------CTCTC--T---------------------T......2411.001100000
.....................................................................................................................................GTTGAAC-------------------------------------GGTTTCTG---ATTTTGGT................................................................................................................................................................................2311.001001000
.AACATTCAGGACTCTGCCTTCGG............................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................CGAGAAGGTTTACAAAAGTA...............................................................................................................................................................................................................................................................................................................................2011.001001000
.AACATTCAGGACTCTGCCC................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............CTCTGCCTTCGATGACATGACCGA................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................TG---ATTTTGGTTC-CA-----ATC--A------CTGGCC-A..................................................................................................................................................2511.001010000
..................................................................................................................................................................................GTTTCTG---ATTTTGGTTC-C............................................................................................................................................................................1811.001100000
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------AAA................................................................................................................................................................................................................................................................2511.001010000
.AACATTCAGGACTCTGCCTTCGA............................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................TAGA--------------------TAGCCTTA-ATAT-TTG-AGT............................................................................2211.001001000
......................GATGACATGACCGAGAAGG...........................................................................................................................................................................................................................................................................................................................................1911.001001000
......................................................ATAGCTCTCGTTTTG--ATT..........................................................................................................................................................................................................................................................................................................1811.001100000
...............................................................................................................................T-TTAAGTTGAAC-------------------------------------GGTTTCTG---ATTTT...................................................................................................................................................................................2511.001010000
..........................................................................................................................................................................................................................................................ATAGA--------------------TAGCCTTA-ATAT-TTG-AGTA...........................................................................2411.001001000
......................GATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2011.001001000
.AACATTCAGGACTCTGCCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........GGACTCTGCCTTCGATGACATGACC..................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................GTAATTTCAAA-------CACGTTCTTCG.................................................2211.001100000
......................................................................................................................GAGTTTACTT-TTAAGTTGAAC-------------------------------------...................................................................................................................................................................................................2111.001100000
......TCAGGACTCTGCCTTCGATGACATGAC...................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................CGATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2111.001001000
droAna3
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------ACAAAAAAAC-CCATTGTG---CTTTTGGTTC-GA-----TTC--ACCAAAATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTTAATAA-TTG-AGTAACTTCTAA-------CGCGTTTTCCTT---CAA--CCATCTCTC--TC---------------ACTCTCT-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................CGATGACATGACCGAGAAGG...........................................................................................................................................................................................................................................................................................................................................2012.002010010
.........................................................................................................................................................................................................................ATTGGCC-AA-AA-------------------CTTAGAC....................................................................................................................1812.002020000
....................................................................................................................................................................................TTGTG---CTTTTGGTTC-GA-----TTC--ACC..............................................................................................................................................................2311.001010000
.............................................................................................................................................................................................................................................................................................................CTAA-------CGCGTTTTCCTT---CAA--CCATCT..................................2511.001000010
..........................................TTACAAAAGTAAATAGCTCTCGTT..................................................................................................................................................................................................................................................................................................................2411.001000010
.......................................................................................................................................................................................................................AAATTGGCC-AA-AA-------------------CTTAGACA------------------TA...............................................................................................2311.001010000
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAA...............................................................................................................................................................................................................................................................2711.001010000
......................................................................................................................................................................................................................AAAATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCT...........................................................................................2811.001010000
................GGCTTCGATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2611.001010000
...............................................AAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------...................................................................................................................................................................................................................................................................2811.001010000
...................................................................................................................................................................................ATTGTG---CTTTTGGTTC-GA-----TTC--ACC..............................................................................................................................................................2411.001010000
.........................GACATGACCGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................TTAATAA-TTG-AGTAACTTCTAA-------CGCGT.......................................................2711.001001000
......................................................................................................................................................................................................................AAAATTGGCC-AA-AA-------------------CTTAGA.....................................................................................................................2011.001010000
......................................................................................................................................................................................................................AAAATTGGCC-AA-AA-------------------CTTAGAC....................................................................................................................2111.001010000
........................................................AGCTCTCGTTTTG--ATTAAC------------------------------------AAA................................................................................................................................................................................................................................................................2211.001100000
..............................................................................................................................................................................................................TTC--ACCAAAATTGGCC-AA-AA-------------------CTTAGA.....................................................................................................................2611.001010000
GAACATCCAGGACTCTGGCTTC..............................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................GATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2011.001001000
..................................................................................................................................................................................CATTGTG---CTTTTGGTTC-GA-----......................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................AAAATTGGCC-AA-AA-------------------CTTAGACA------------------T................................................................................................2311.001010000
.................................................................TTTG--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2411.001000010
.............................................................................................................................................................................................................................................................................................................................TTTCCTT---CAA--CCATCTCTC--TC---------------ACTCTC......2711.001010000
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAG.............................................................................................................................................................................................................................................................2811.001010000
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------...................................................................................................................................................................................................................................................................2311.001010000
........................................................................................................................................................................................................................................................................................................AACTTCTAA-------CGCGTTTTCCTT---.............................................2111.001100000
.......................................................................................................................................................................................................................AAATTGGCC-AA-AA-------------------CTTAGAC....................................................................................................................2011.001010000
.........................................................................................................................................................................................................................ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTC.........................................................................................2711.001010000
................GGCTTCGATGACATGACCGAGAAGGG..........................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................ATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................1911.001000001
.........................................................................................................................................................................................................................ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCC............................................................................................2411.001010000
.................................................................................................................................................................................................................................AA-AA-------------------CTTAGACA------------------TAGCCTTTATA......................................................................................2311.001100000
......................................................................................................................................................................................................................AAAATTGGCC-AA-AA-------------------CTTAGACA------------------TAGC.............................................................................................2611.001010000
..................................GAGAAGGTTTACAAAAGTA...............................................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................CAAAATTGGCC-AA-AA-------------------CTTAGACA------------------T................................................................................................2411.001010000
.......................................................................................................................................................................CAAAAAAAC-CCATTGTG---CTT.....................................................................................................................................................................................2011.001010000
.................................................................TTTG--ATTAAC------------------------------------AAAAAGAGT..........................................................................................................................................................................................................................................................1911.001010000
droBip1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTCAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A--AAAACAC-CCATTGTG---CTTTTGGTTC-GA-----TTCCCAC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTTAATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCTT---CAA--CCATCTCTC--TC---------------ACTCTCT-----SizeHit CountTotal NormTotal
No Reads
droKik1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCTTTTTG--ATCCACCAAA---AAC-----------------------AAACAAAAGAGTTTACTTTTTAAGTTGAAAAACAAAC--AA-AAAACACACA--AAA------CAC----TTGTG---CTTTTGGTTC-CAAAACATT---TA----ATTGGCC-CAAAA----C--------------CTTAGACCT-----------------TAGACTTA-ATAA-CTG-AGTTACTTCTAA-------CGCGTTCTCCGT---ACTCTCCCTCTCTC--TT-------------------TTT-----SizeHit CountTotal NormTotal
No Reads
droFic1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTGCA-CTTTTGGTTC-CA-----ACC--AT----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAACTTCTAA-------CGCGTTCTCCGT---TAA--CCATCTCTC--TT-C------------------CT-----SizeHit CountTotal NormTotal
No Reads
droEle1
GAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAC--------------------------ACA----CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCCCAA-AA-------------------CTTAGACGT--------------T--TAGCCCTT-ACAA-TTG-AGTAA-TTCTAA-------CGCGTTCTCCGT---ACC--TCATCTCTC--TT-C-----------------CAT-----SizeHit CountTotal NormTotal
No Reads
droRho1
GAACATCCAGGACTCTGGCTTTGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCCCAA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAACTTCTAA-------CGCGTTCTCCGT---AAC--TCATCTCTC--TT-C-----------------CAT-----SizeHit CountTotal NormTotal
No Reads
droBia1
CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CC-----AAC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-CTG-AGTAACTTCTAA-------CGCGTTCTCCGT---ACC--CCATCTCTCTCTT-C------------------TA-----SizeHit CountTotal NormTotal
No Reads
droTak1
CAACATCCAGGACTCTGACTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--AATAAC------------------------------------CGAAAGAGTTTACTT-TTAAGTTAAAA--------------------------A------CAC----TTGTG---CTTTTGGTTCACA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAACTTCTAA-------CGCGTTCTCCGT---ACC--CCATCTCTC--TCTC--------------CTTTTT-----SizeHit CountTotal NormTotal
No Reads
droEug1
GAACATCCAGGACTCTGGCTTTGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ACC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-CTG-AGTAATTTCTAA-------CGCGTTCTCCGT---ACT--CCATCTCTC--TT-C------------------CC-----SizeHit CountTotal NormTotal
No Reads
dm3
TAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTA---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT---------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....ATCCAGGACTCTGGCTTCGATGAC........................................................................................................................................................................................................................................................................................................................................................24113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005500000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................TTCGATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................24112.00120000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000100000000001000000000000001000000000000000200000
............................................................................................................................................................................................................................................................................................................TCTAA-------CGCGTTTTCCGT---ACT--CCATC...................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101100010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................A------------------TAGCCTTC-ATAA-TTG-AGT............................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................C-ATAA-TTG-AGTAATTTCTAA-------CGCG........................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CGTTTTG--ATTAAC------------------------------------AAAAAGAGA..........................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--.............................2714.0040000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------.................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TCTAA-------CGCGTTTTCCGT---ACT--CCATCTC.................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100100000
...................TTCGATGACATGACCGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................A-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGAC....................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AACATCCAGGACTCTGGCT................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AA-------CGCGTTTTCCGT---ACT--CCATCTC.................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AATTTCTAA-------CGCGTTTTCCGT---.............................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................G--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
............................................................................................................................................................................................................................GGCC-AA-AA-------------------CTTAGACA------------------TAGC.............................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ACAAAAGTAAATAGCTCTCGT...................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000
...................................................TAAATAGCTCTCGTTTTG--ATT..........................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGGCTTCGATGACATGACCGAG...............................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CAGGACTCTGGCTTCGATGACATGACC..................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................T-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------.................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TAGCTCTCGTTTTG--ATTAAC------------------------------------AA.................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AAAAGTAAATAGCTCTCGTTTTG--ATT..........................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AAGAGTTTACTT-TTAAGTTGA..........................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
.......................................................................................................................................................................................................CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------.................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGA.....................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GAAGGTTTACAAAAGTAAATAGCTCTC.....................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................A-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGA.....................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AGTAATTTCTAA-------CGCGTTTTC...................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................T-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGA.....................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTCTAA-------CGCGTTTTCCGT---ACT--CCATC...................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TCTAA-------CGCGTTTTCCGT---ACT--CCATCTCT................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................ATGACATGACCGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010
...........ACTCTGGCTTCGATGACATGACCG.................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AAC------------------------------------AAAAAGAGTTTACTT-TT.................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAA..............................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AGCCTTC-ATAA-TTG-AGTAATT........................................................................2112.0020000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGATGACATGACCGAGAAGG...........................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000
........................TGACATGACCGAGAAGGTTTACAAAAG.................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCGATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................AGCCTTC-ATAA-TTG-AGTAATTT.......................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTCTAA-------CGCGTTTTCCGT---ACT--CCATCTC.................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGGCTTCGATGACATGACCGA................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CTCTGGCTTCGATGACATGAC...................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT---------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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..................................................GTAAATAGCTCTCGTTTTG--AT...........................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..........................................................................................................................................................................................................................................................TTAGACA------------------TAGCCTTC-ATAA-TTG-AGT............................................................................2511.00100000010000000000
.............................................................................................................................................................................................................................................................................................TAA-TTG-AGTAATTTCTAA-------CGCGTTTTC...................................................2711.00100000000000001000
CAACATCCAGGACTCTGGCT................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........................................................................................................................................................................................................................ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCC...........................................................................................2511.00100100000000000000
........................................................................................................................................................................................................................................................................................TTC-ATAA-TTG-AGTAATTTCTAA-------CGCGTT......................................................2811.00100000001000000000
................GGCTTCGATGACATGACCG.................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
......................................................................................................................GAGTTTACTT-TTAAGTTGAAA--------------------------..............................................................................................................................................................................................................2111.00100010000000000000
...................................................................................................................................................................................................................AC----ATTGGCC-AA-AA-------------------CTTAGAC....................................................................................................................2011.00100010000000000000
.......CAGGACTCTGGCTTCGATGACATGACC..................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
....................................................................................................................................................................................................TT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGA.....................................................................................................................2611.00100000010000000000
droSec2
CAACATCCAGGACTCTGGCTTCGATGACATGACCGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT-C--------------CTATATGCCGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................A------------------TAGCCTTC-ATAA-TTG-AGT............................................................................1915.0050050
..................................................................................................................................................................................................GTTT-CA-----ATC--AC----ATTGGCC-AA-................................................................................................................................................2012.0020020
...............................................................................................................................................................................................................................................................................................................AA-------CGCGTTTTCCGT---ACT--CCATCTCTC--T............................2711.0010010
....................................................................................................................................................................................................................................AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-AGT............................................................................2811.0010010
..........................................TTACAAAAGTAAATAGCTCTCGTT..................................................................................................................................................................................................................................................................................................................2411.0010100
....................................................................................................................AAGAGTTTACTT-TTAAGTTGA..........................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................AA-------------------CTTAGACA------------------TAGCCTTC-ATAA-TTG-A..............................................................................2611.0011000
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------AAA................................................................................................................................................................................................................................................................2511.0010100
...............TGGCTTCGATGACATGACCGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2711.0010010
......................................................ATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAA..............................................................................................................................................................................................................................................................2611.0010010
........AGGACTCTGGCTTCGATGACA.......................................................................................................................................................................................................................................................................................................................................................2111.0010100
...CATCCAGGACTCTGGCTTC..............................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................TCGATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2311.0010100
...................................................................................................................AAAGAGTTTACTT-TTAAGTTGAA.........................................................................................................................................................................................................................................2311.0010010
......................GATGACATGACCGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2111.0010100
.........................GACATGACCGAGAAGGTTTACAAAAGT................................................................................................................................................................................................................................................................................................................................2711.0010010
..................................................................TTG--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2311.0010010
..................................................................................................................AAAAGAGTTTACTT-TTAAGTTGAAA--------------------------..............................................................................................................................................................................................................2511.0010010
....................................................................G--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................................................................AGCCTTC-ATAA-TTG-AGTA...........................................................................1811.0010010
............................................................................................................................................................................................................................GGCC-AA-AA-------------------CTTAGACA------------------TAG..............................................................................................1911.0010010
.................................................................................................................................................................................................................................................................................................TTG-AGTAATTTCTAA-------CGCG........................................................1911.0010010
......................................................ATAGCTCTCGTTTTG--ATTAAC------------------------------------AAA................................................................................................................................................................................................................................................................2411.0011000
..............CTGGCTTCGATGACATGACCGAGAAG............................................................................................................................................................................................................................................................................................................................................2611.0010010
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------A..................................................................................................................................................................................................................................................................2411.0010010
...................................................................................................................AAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------.......................................................................................................................................................................................................2511.0010010
..................................................................TTG--ATTAAC------------------------------------AAAAAGAGT..........................................................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................................................................TTAGACA------------------TAGCCTTC-ATAA-TTG-AGT............................................................................2511.0010010
..................................................................................................................................................................................................................................................................................................................................GT---ACT--CCATCTCTC--TT-C--------------CTATATGCCG.2711.0011000
........................................................................................................................................................................................................................................................................................................AATTTCTAA-------CGCGTTTTCCGT---.............................................2111.0010010
.................................................................TTTG--ATTAAC------------------------------------AAAAAGAGTTACT......................................................................................................................................................................................................................................................2340.2510010
droYak3
CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TT---------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................AAGAGTTTACTT-TTAAGTTGAAA--------------------------..............................................................................................................................................................................................................2313.00300000030000
.........................GACATGACTGAGAAGGTTTACAAAAGT................................................................................................................................................................................................................................................................................................................................2712.00200000020000
....................................................................G--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2112.00200000020000
....................................................................................................................................AGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGT................................................................................................................................................................................2511.00100010000000
............................................ACAAAAGTAAATAGCTCTCGTTTT................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------A..................................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................A-TTG-AGTAATTTCTAA-------CGCGTTTTCC..................................................2611.00101000000000
.................................................................TTTG--ATTAAC------------------------------------AAAAAGAGTTTAC......................................................................................................................................................................................................................................................2311.00101000000000
..................................................GTAAATAGCTCTCGTTTTG--.............................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................AGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGA............................................................................................................................................................................................................................................................2611.00100010000000
...................................................................................................................AAAGAGTTTACTT-TTAAGTT............................................................................................................................................................................................................................................2011.00100000010000
....ATCCAGGACTCTGGCTTCGATGA.........................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................................................................................................................................ATTTCTAA-------CGCGTTTTCCGT---ACT--........................................2311.00100000010000
...........................CATGACTGAGAAGGTTTACAAAAGTA...............................................................................................................................................................................................................................................................................................................................2611.00100000010000
........................................................................................................................................................................................................................................................................................................AATTTCTAA-------CGCGTTTTCC..................................................1911.00100100000000
..................................................GTAAATAGCTCTCGTTTTG--AT...........................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................CATGACTGAGAAGGTTTACAAA...................................................................................................................................................................................................................................................................................................................................2211.00101000000000
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------AA.................................................................................................................................................................................................................................................................2511.00101000000000
...................................................................TG--ATTAAC------------------------------------AAAAAGAGTTTACTT-T..................................................................................................................................................................................................................................................2411.00100000010000
..................................................................................................................................................................................................GTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTT........................................................................................................................2511.00100100000000
.....................CGATGACATGACTGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................GTTGAAA--------------------------A------CAC----TTGTG---CC......................................................................................................................................................................................1811.00100100000000
.........GGACTCTGGCTTCGATGAC........................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.....................CGATGACATGACTGAGAAG............................................................................................................................................................................................................................................................................................................................................1911.00110000000000
.....................CGATGACATGACTGAGAAGGTTTACAAA...................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..........................................TTACAAAAGTAAATAGCTCTCGT...................................................................................................................................................................................................................................................................................................................2311.00100100000000
...........................................................................AC------------------------------------AAAAAGAGTTTACTT-TTAAGTTG...........................................................................................................................................................................................................................................2511.00101000000000
..................................GAGAAGGTTTACAAAAGTAAATAGCT........................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------...................................................................................................................................................................................................................................................................2311.00101000000000
.............................................................................................................................................................................................................................................................................................TAA-TTG-AGTAATTTCTAA-------CGCGTT......................................................2411.00101000000000
............................................................................................................................................................................................................................................................................................ATAA-TTG-AGTAATTTCTAA-------CGCGTT......................................................2511.00100100000000
..ACATCCAGGACTCTGGCTTCGATGACA.......................................................................................................................................................................................................................................................................................................................................................2711.00100010000000
.....................................................................................................................AGAGTTTACTT-TTAAGTTGAAA--------------------------A------C......................................................................................................................................................................................................2411.00100000010000
......................GATGACATGACTGAGAAGGTT.........................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................TGACATGACTGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............CTCTGGCTTCGATGACATGACTG.................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
......................GATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2011.00100010000000
......................GATGACATGACTGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...................TTCGATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................GACATGACTGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................1911.00100000100000
.................................TGAGAAGGTTTACAAAAGTAA..............................................................................................................................................................................................................................................................................................................................2111.00100000100000
.................................................................TTTG--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2411.00100000010000
...............................................................................................................................................................................................TTGGTTT-CA-----ATC--AC----ATTGGCC-...................................................................................................................................................2111.00100100000000
...................................................................TG--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2211.00100000010000
droEre2
CAACATCCAGGACTCTGGCTTCGATGACATGACTGAGAAGGTTTACAAAAGTAAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAAAGAGTTTACTT-TTAAGTTGAAA--------------------------A------CAC----TTGTG---CTTTTGGTTT-CA-----ATC--AC----ATTGGCC-AA-AA-------------------CTTAGACA------------------TAGCCTTT-ATAA-TTG-AGTAATTTCTAA-------CGCGTTTTCCGT---ACT--CCATCTCTC--TC--------------------TT-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................GATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2012.0020000020
..........................................TTACAAAAGTAAATAGCTCTCGTTT.................................................................................................................................................................................................................................................................................................................2512.0020000002
.........................GACATGACTGAGAAGGTTT........................................................................................................................................................................................................................................................................................................................................1911.0010100000
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------AA.................................................................................................................................................................................................................................................................2511.0010001000
....................................................................G--ATTAAC------------------------------------AAAAAGAGTTTACT.....................................................................................................................................................................................................................................................2111.0010001000
....................TCGATGACATGACTGAGAAGG...........................................................................................................................................................................................................................................................................................................................................2111.0010000010
....................................................................................................................AAGAGTTTACTT-TTAAGTTGA..........................................................................................................................................................................................................................................2111.0010000100
............................ATGACTGAGAAGGTTTACAAAAGT................................................................................................................................................................................................................................................................................................................................2411.0010000010
CAACATCCAGGACTCTGGCTTC..............................................................................................................................................................................................................................................................................................................................................................2211.0010100000
...............TGGCTTCGATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................ACATGACTGAGAAGGTTTA.......................................................................................................................................................................................................................................................................................................................................1911.0010100000
.............................................................................................................................................................................................................................................................GACA------------------TAGCCTTT-ATAA-TTG-AGTA...........................................................................2311.0010100000
..................................GAGAAGGTTTACAAAAGTA...............................................................................................................................................................................................................................................................................................................................1911.0010000100
.....TCCAGGACTCTGGCTTCGATGACA.......................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................................................................................................................................................................................................................................................A------------------TAGCCTTT-ATAA-TTG-AGTAAT.........................................................................2211.0010000010
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------AAA................................................................................................................................................................................................................................................................2611.0010000100
.........................GACATGACTGAGAAGGTTTACAAAA..................................................................................................................................................................................................................................................................................................................................2511.0010000100
...............................................................................................................................................................................................................................................................CA------------------TAGCCTTT-ATAA-TTG-AGT............................................................................2011.0010000010
....................................................AAATAGCTCTCGTTTTG--ATTAAC------------------------------------...................................................................................................................................................................................................................................................................2311.0011000000
.....................................................................................................................AGAGTTTACTT-TTAAGTTGAA.........................................................................................................................................................................................................................................2111.0010001000
.....................................................AATAGCTCTCGTTTTG--ATTAAC------------------------------------AAAA...............................................................................................................................................................................................................................................................2611.0010100000
......................................................ATAGCTCTCGTTTTG--ATTAA........................................................................................................................................................................................................................................................................................................2011.0010100000
.....................CGATGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................2111.0010001000
.........................GACATGACTGAGAAGGTTTACAAAAGT................................................................................................................................................................................................................................................................................................................................2711.0010000010
........................TGACATGACTGAGAAGGT..........................................................................................................................................................................................................................................................................................................................................1811.0010001000
.......................................GGTTTACAAAAGTAAATAGCTCTCGT...................................................................................................................................................................................................................................................................................................................2611.0010100000
........................................................................................................................................................................................................................................................................................................AATTTCTAA-------CGCGTTTTCC..................................................1911.0010100000
CAACATCCAGGACTCTGGCTT...............................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...........................................TACAAAAGTAAATAGCTCTCGTTT.................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................GAGAAGGTTTACAAAAGT................................................................................................................................................................................................................................................................................................................................1811.0010000100

Generated: 05/17/2015 at 11:32 PM