ID:

dmo_101

 Coordinate:

scaffold_6328:351335-351390 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.6 -22.3 -22.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCCAGATAGCTCAAATGGCAAAAGAACAACTATTTGAAACTAGGCTATCTGAAACATTTGTAAGTGAAATTTTTATGAACAATTCTACTTCCATATGTTTCAGATTGCTACGTCTAACTACTACAATCCCGATGTTCCTGCCAACTGTTTGAGCA

***********************************....((..(((.(((((((((((.((.(((((.((((.........)))).))))).)).))))))))))).)))..))......************************************ 		Read size # Mismatch Hit Count Total Norm Total V056

head

 M046

female body

 M060

embryo

 V049

head

 V041

embryo

 V110

male body
...................................................................................TTCTACTTCCATATGTTTCAGA................................................... 22 0 1 64.00 64 14 15 17 11 6 1
......................................................................................TACTTCCATATGTTTCAGATTG................................................ 22 0 1 28.00 28 6 12 3 5 2 0
..................................................TGAAACATTTGTAAGTGAAATT.................................................................................... 22 0 1 18.00 18 10 4 2 1 0 1
.....................................................................................CTACTTCCATATGTTTCAGATTG................................................ 23 0 1 8.00 8 1 3 2 0 2 0
................................................TCTGAAACATTTGTAAGTGA........................................................................................ 20 0 1 6.00 6 4 1 0 1 0 0
...............................................ATCTGAAACATTTGTAAGTGAA....................................................................................... 22 0 1 6.00 6 1 1 3 1 0 0
................................................TCTGAAACATTTGTAAGTGAAA...................................................................................... 22 0 1 5.00 5 0 0 3 2 0 0
................................................TCTGAAACATTTGTAAGTGAA....................................................................................... 21 0 1 5.00 5 1 1 0 3 0 0
...................................................................................TGCTACTTCCATATGTTTCAGA................................................... 22 1 1 4.00 4 0 0 4 0 0 0
...................................................................................TTCTACTTCCATATGTTTCAG.................................................... 21 0 1 4.00 4 2 0 0 2 0 0
..................................................TGAAACATTTGTAAGTGAAA...................................................................................... 20 0 1 4.00 4 2 0 1 1 0 0
......................................................................................TACTTCCATATGTTTCAGATTGT............................................... 23 1 1 4.00 4 2 0 0 1 1 0
......................................................................................TACTTCCATATGTTTCAGATT................................................. 21 0 1 3.00 3 1 1 1 0 0 0
...............................................ATCTGAAACATTTGTAAGTGA........................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0
...................................................................................TTATACTTCCATATGTTTCAGA................................................... 22 1 1 2.00 2 1 0 1 0 0 0
....................................................................................TCTACTTCCATATGTTTCAG.................................................... 20 0 1 2.00 2 2 0 0 0 0 0
..................................................TTAAACATTTGTAAGTGAAATT.................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.................................................CTGAAACATTTGTAAGTGAA....................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..................................................TGAAGCATTTGTAAGTGAAATT.................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.................................................................................CATTCTACTTCCATATGTTTCAGA................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...................................................................................TTCTACTTCCATATGCTTCTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................TTCTACTTCCATCTGTTTCAGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................TGAAACATTTGTAAGTGAAAT..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................CTACTTCCATATGTTTCAGAC.................................................. 21 1 1 1.00 1 0 0 1 0 0 0
..................................................TTAAACATTTGTAAGTGAAAT..................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...................................................................................TTCTACTTCCATATGCTTCAGA................................................... 22 1 1 1.00 1 0 0 0 0 1 0
...............................................ATCCGAAACATTTGTAAGTGA........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
................................................TCTGAAACATTTCTAAGTGA........................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
................................................TCTGAAACATTTGTAAGGGAA....................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................TCTGAAACATTTGTAAGTGAAT...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1
.....................................................................................CTACTTCCATATGTTTCCGATTG................................................ 23 1 1 1.00 1 0 0 0 0 1 0
......................................................................................TACTTCCATATGTTTAAGAATG................................................ 22 2 1 1.00 1 0 0 0 1 0 0
...................................................................................TTCTACTTCCATATGTTCCAC.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...............................................ATCTGAAACAGTTGTAAGTGA........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................................................CTTCTACTTCCATATGTTTCAGA................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...................................................................................TTCTACTTCCATATGTTTCA..................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.................................................................................TATTCTACTTCCATATGTTTCAG.................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................ACTTCCATATGTTTCAGATTG................................................ 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................TTCTACTTCCATATGTTTCAGAA.................................................. 23 1 1 1.00 1 0 0 0 1 0 0
.....................................................................................CTACTTCCATATGTTTCAGATTT................................................ 23 1 1 1.00 1 0 0 0 1 0 0
......................................................................................TAATTCCATAAGTTTCAGATTGC............................................... 23 2 1 1.00 1 0 0 0 1 0 0
....................................................................................TCTACTTCCATATGTTTCAGA................................................... 21 0 1 1.00 1 0 0 0 1 0 0
..................................................TGCAACATTTGTAAGTGAAA...................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
......................................................................................TAGTTCCATATGTTTCGGCTTG................................................ 22 3 3 0.33 1 0 0 0 0 1 0
..................................................TGAAACATTTGTATCTGAAC...................................................................................... 20 3 20 0.25 5 0 4 0 0 0 1
..................................................TGCCGCATTTGTAAGTGAAATT.................................................................................... 22 3 5 0.20 1 0 0 0 1 0 0
.......................................................................................................GAAAGCCACGTCTAACTAC.................................. 19 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

AAGGTCTATCGAGTTTACCGTTTTCTTGTTGATAAACTTTGATCCGATAGACTTTGTAAACATTCACTTTAAAAATACTTGTTAAGATGAAGGTATACAAAGTCTAACGATGCAGATTGATGATGTTAGGGCTACAAGGACGGTTGACAAACTCGT

************************************....((..(((.(((((((((((.((.(((((.((((.........)))).))))).)).))))))))))).)))..))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V049

head

 M046

female body

 V110

male body
..................................................ACTTTGTAAACATAGACTTG...................................................................................... 20 3 20 0.15 3 0 2 1
.....................................................TTGTAAAAATTCACTTTCATAAT................................................................................ 23 3 7 0.14 1 1 0 0
......................................................TGTAAAAATTCACTATCAAAAT................................................................................ 22 3 16 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6328:351285-351440 + dmo_101 confident TTCCAGATAGCTCAAATGGCAAAAGAACAACTATTTGAAACTAGGCTATCTGAAACATTTGTAAGTGAAATTTTTATGAACAATTCTACTTCCATATGTTTCAGATTGCTACGTCTAACTACTACAATCCCGATGTTCCTGCCAACTGTTTGAGCA
droGri2 scaffold_15110:14614387-14614434 + -------------------------AACAATTTTTTGGGTTTAGACTAATAAAAATGTTTTTGAGCGAAATTT-----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTCCAGATAGCTCAAATGGCAAAAGAACAACTATTTGAAACTAGGCTATCTGAAACATTTGTAAGTGAAATTTTTATGAACAATTCTACTTCCATATGTTTCAGATTGCTACGTCTAACTACTACAATCCCGATGTTCCTGCCAACTGTTTGAGCASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................TTCTACTTCCATATGTTTCAGA...................................................22164.00641561114171
......................................................................................TACTTCCATATGTTTCAGATTG................................................22128.00281225630
..................................................TGAAACATTTGTAAGTGAAATT....................................................................................22118.00184011021
.....................................................................................CTACTTCCATATGTTTCAGATTG................................................2318.008320120
................................................TCTGAAACATTTGTAAGTGA........................................................................................2016.006101400
...............................................ATCTGAAACATTTGTAAGTGAA.......................................................................................2216.006101130
................................................TCTGAAACATTTGTAAGTGAAA......................................................................................2215.005002030
................................................TCTGAAACATTTGTAAGTGAA.......................................................................................2115.005103100
...................................................................................TTCTACTTCCATATGTTTCAG....................................................2114.004002200
..................................................TGAAACATTTGTAAGTGAAA......................................................................................2014.004001210
......................................................................................TACTTCCATATGTTTCAGATTGT...............................................2314.004011200
......................................................................................TACTTCCATATGTTTCAGATT.................................................2113.003100110
...............................................ATCTGAAACATTTGTAAGTGA........................................................................................2112.002000200
....................................................................................TCTACTTCCATATGTTTCAG....................................................2012.002000200
.................................................CTGAAACATTTGTAAGTGAA.......................................................................................2011.001100000
..................................................TGAAACATTTGTAAGTGAAAT.....................................................................................2111.001000100
.....................................................................................CTACTTCCATATGTTTCAGAC..................................................2111.001000010
................................................TCTGAAACATTTGTAAGTGAAT......................................................................................2211.001000001
...................................................................................TTCTACTTCCATATGTTTCA.....................................................2011.001100000
.......................................................................................ACTTCCATATGTTTCAGATTG................................................2111.001100000
...................................................................................TTCTACTTCCATATGTTTCAGAA..................................................2311.001001000
.....................................................................................CTACTTCCATATGTTTCAGATTT................................................2311.001001000
....................................................................................TCTACTTCCATATGTTTCAGA...................................................2111.001001000
droGri2
-------------------------AACAATTTTTTGGGTTTAGACTAATAAAAATGTTTTTGAGCGAAATTT-----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 06:47 PM