ID:dmo_1005 |
Coordinate:scaffold_6496:6546388-6546538 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in alignment | mismatch in read |
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| -38.0 | -37.9 | -37.8 |
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exon [dmoj_GLEANR_4305:2]; CDS [Dmoj\GI19369-cds]; intron [Dmoj\GI19369-in]
No Repeatable elements found
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGTTTCCTCTGCTACTTCTGTCTAATATATATAGGTAGAGAACTATTCGACTTTTACGACTTTATTGGATTTGTGGGGCAATTCTTTTTGCTTTGCCTCATTGTGGGCCTAACTGGTGAGTCGTTCAGTTGAGTTCAGATTGAGCTCAAAGTCTGCCAATTGATAATTGGAATATCTGAACAATAACAATTTTTATTGCAGCTCTTATGGGATATTTGCTGTATTTCGTCTATCAGAAATATGTGGAGATG **************************************************.....(((((((..........(((((((((...........))))))))).....(((.....))))))))))(((((((((((((...)))))))))......((((((...)))))).....)))).((((((......))))))...************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M046 female body |
V110 male body |
M060 embryo |
V049 head |
V056 head |
|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................GACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... | 23 | 0 | 1 | 3.00 | 3 | 2 | 1 | 0 | 0 | 0 |
| ...........................................................CTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... | 21 | 0 | 1 | 3.00 | 3 | 1 | 1 | 1 | 0 | 0 |
| ..................................................................................................................................................................................................................GATATTTGCTGTATTTCGT...................... | 19 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| ............................................................TTTATTGGATTTGTGGGGCA........................................................................................................................................................................... | 20 | 0 | 1 | 2.00 | 2 | 0 | 1 | 0 | 1 | 0 |
| ......................................................TACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... | 26 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 |
| .GTTTCCTCTGCTACTTCTGTCT.................................................................................................................................................................................................................................... | 22 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| .........................................................GACTTTATTGGATTTGTGGGGC............................................................................................................................................................................ | 22 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................GATATTTGCTGTATTTCGTCTAT.................. | 23 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................CTATCAGAAATATGTGGAGA.. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................AATATATATAGGTAGAGAACTATTC........................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ................................................GACTTTTACGACTTTATTGG....................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...................GTCTAATATATATAGGTAGAGA.................................................................................................................................................................................................................. | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| .........................................................GACTTTATTGGATTTGTGGGGCAATT........................................................................................................................................................................ | 26 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ............................................................TTTATTGGATTTGTGGGG............................................................................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .GTTTCCTCTGCTACTTCTGTC..................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................GTCTATCAGAAATATGTGGA.... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...................GTCTAATATATATAGGTAGAGAACT............................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................TTACGACTTTATTGGATTTGCGGGGCA........................................................................................................................................................................... | 27 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................................TTCGACTTTTACGACTTTATT......................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................ACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................CGACTTTATTGGATTTGTGGGGC............................................................................................................................................................................ | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................AATTCTTTTTGCTTTGCCTC........................................................................................................................................................ | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................CTTTATTGGATTTGTGGGGC............................................................................................................................................................................ | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................ATTTGCTGTATTTCGTCTAT.................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ....................................................TTTACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................CTATCAGAAATATGTGGAGAT. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................TTACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..................................................CTTTTACGACTTTATTGGATTTGTGGGG............................................................................................................................................................................. | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............ACTTCTGTCTAATATATATAGGTAGAG................................................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................TCGTCTATCAGAAATATGTGGAGAT. | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...................GTCTAATATATATAGGTAGA.................................................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................ATATATATAGGTAGAGAACTATTCGAC........................................................................................................................................................................................................ | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................ATTTGCTGTATTTCGTCTATCAG............... | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................................................TTATTGGATTTGTGGGGCAATT........................................................................................................................................................................ | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................AATATATATAGGTAGAGAACT............................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| .........................................ACTATTCGACTTTTACGACTTTATTGG....................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................ATATAGGTAGAGAACTATTCGA......................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................CGTCTATCAGAAATATGTGGA.... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| .........................................ACTATTCGACTTTTACGACTTT............................................................................................................................................................................................ | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ................................AGGTAGAGCACTATTGGAC........................................................................................................................................................................................................ | 19 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| ........................................................CGCCATTATTGGATTTGTGG............................................................................................................................................................................... | 20 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................TCATTGTGACACTAACTGGTG..................................................................................................................................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 |
| ............................ATGTAGGTAGAGCACTATTTG.......................................................................................................................................................................................................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................TCTATCAGAAATACGTCGA.... | 19 | 2 | 4 | 0.50 | 2 | 1 | 1 | 0 | 0 | 0 |
| .................................................................................................TCGCTGTGTGCCTAACTGGTG..................................................................................................................................... | 21 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................TCGCTGTGAGCCTAACTGGT...................................................................................................................................... | 20 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 |
| ................................................................................................................................TTGAGTTCGGATTGCGCT......................................................................................................... | 18 | 2 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 |
|
TCAAAGGAGACGATGAAGACAGATTATATATATCCATCTCTTGATAAGCTGAAAATGCTGAAATAACCTAAACACCCCGTTAAGAAAAACGAAACGGAGTAACACCCGGATTGACCACTCAGCAAGTCAACTCAAGTCTAACTCGAGTTTCAGACGGTTAACTATTAACCTTATAGACTTGTTATTGTTAAAAATAACGTCGAGAATACCCTATAAACGACATAAAGCAGATAGTCTTTATACACCTCTAC
**************************************************.....(((((((..........(((((((((...........))))))))).....(((.....))))))))))(((((((((((((...)))))))))......((((((...)))))).....)))).((((((......))))))...************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | V049 head |
M046 female body |
|---|---|---|---|---|---|---|---|
| .................................CCATCTCTTGATAAGCTGGAAAT................................................................................................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 |
| ................................................................................................................................TTCTCAAGTCTAACTCGAGT....................................................................................................... | 20 | 2 | 1 | 1.00 | 1 | 1 | 0 |
| .....................................................................................................................................................................................................................TAAACCACCAAAAGCAGATA.................. | 20 | 3 | 20 | 0.15 | 3 | 0 | 3 |
| ..............................................................................................................................TCGACTCAAGTTTTACTCGAGT....................................................................................................... | 22 | 3 | 7 | 0.14 | 1 | 1 | 0 |
| .........................................................................................................................................................................CTTGTAGACTTTTTCTTGTTA............................................................. | 21 | 3 | 16 | 0.06 | 1 | 1 | 0 |
| Species | Coordinate | ID | Alignment |
|---|---|---|---|
| droMoj3 | scaffold_6496:6546338-6546588 - | dmo_1005 | AGTTTCCTCTGCTACTTCTGTCTAATATATATAGGTAGAGAACTATTCGAC---TTTTACGACTTTATTGGATTTGTGGGGCAATTCTTTTTGCTTTGCCTC--------------ATTGTGGGCCTAACTGGTGAGTCGTT---------------CAGTTGAGTTCAG-----ATTGAGCTCAAAGTCTGCCAATTG-----ATAATTGGAATATCTGAACAATAACA--------------ATTTTTATTGCAGCTCTTATGGGATATTTGCTGTATTTCGTCTATCAGAAATATGTGGAGATG |
| droVir3 | scaffold_12875:19510909-19511169 - | dvi_7977 | GGTGTAATGTGCTATTACTGTATGAATTTTATAACTGACGATTTCCTTTATTCATTTTACGACTTT------------GGGGAGTTTCTTTTGGCGTTACTAGTTTTGCTACTTTTAT--TGGCCGCCACAGGTTAGA------------AATTAATCAGCAGCAATCCTAGTCTGTTACGTTCAAAGTCTTTTGTATAAAATTATC----GCTTTAATGACT----------------AATGTACATTAATTCCAGCGTTTCTGGGCTACCTGATTTACTACGTGTACGAAGAGTATGCGAGGCTG |
| droGri2 | scaffold_15245:18034099-18034352 + | GGCGTCCTCTGCTATTGTAATATCGTATATATTACCAATGATCTTTTTGAT---TTTTACGATTTT------------GGATCGTTTTTCTTACTGTTCCTCGGATTTCTTGTTTTGT--TGGCAGCTACAGGTAAGTTGGTAATTGATAAATTAATAA------------------------------CCGCCGA-TG-----ATAAGGAAAATAAATAAATAATAATATAATCTCCAACTATACATTCATTGCAGGGCTTCTGGCCTACATAATGTATTGTGTATACCAAGAGTTTGAGGAATTA |
| Species | Read alignment | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| droMoj3 |
|
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| droVir3 |
|
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| droGri2 |
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Generated: 05/17/2015 at 11:31 PM