ID:

dmo_1005

Coordinate:

scaffold_6496:6546388-6546538 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.0 -37.9 -37.8

Flybase annnotation

exon [dmoj_GLEANR_4305:2]; CDS [Dmoj\GI19369-cds]; intron [Dmoj\GI19369-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTTTCCTCTGCTACTTCTGTCTAATATATATAGGTAGAGAACTATTCGACTTTTACGACTTTATTGGATTTGTGGGGCAATTCTTTTTGCTTTGCCTCATTGTGGGCCTAACTGGTGAGTCGTTCAGTTGAGTTCAGATTGAGCTCAAAGTCTGCCAATTGATAATTGGAATATCTGAACAATAACAATTTTTATTGCAGCTCTTATGGGATATTTGCTGTATTTCGTCTATCAGAAATATGTGGAGATG
**************************************************.....(((((((..........(((((((((...........))))))))).....(((.....))))))))))(((((((((((((...)))))))))......((((((...)))))).....)))).((((((......))))))...**************************************************
Read size # Mismatch Hit Count Total Norm Total M046
female body
V110
male body
M060
embryo
V049
head
V056
head
.........................................................GACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... 23 0 1 3.00 3 2 1 0 0 0
...........................................................CTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... 21 0 1 3.00 3 1 1 1 0 0
..................................................................................................................................................................................................................GATATTTGCTGTATTTCGT...................... 19 0 1 2.00 2 2 0 0 0 0
............................................................TTTATTGGATTTGTGGGGCA........................................................................................................................................................................... 20 0 1 2.00 2 0 1 0 1 0
......................................................TACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0
.GTTTCCTCTGCTACTTCTGTCT.................................................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0
.........................................................GACTTTATTGGATTTGTGGGGC............................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0
..................................................................................................................................................................................................................GATATTTGCTGTATTTCGTCTAT.................. 23 0 1 2.00 2 1 1 0 0 0
.....................................................................................................................................................................................................................................CTATCAGAAATATGTGGAGA.. 20 0 1 1.00 1 1 0 0 0 0
.......................AATATATATAGGTAGAGAACTATTC........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................GACTTTTACGACTTTATTGG....................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...................GTCTAATATATATAGGTAGAGA.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0
.........................................................GACTTTATTGGATTTGTGGGGCAATT........................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0
............................................................TTTATTGGATTTGTGGGG............................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
.GTTTCCTCTGCTACTTCTGTC..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................GTCTATCAGAAATATGTGGA.... 20 0 1 1.00 1 1 0 0 0 0
...................GTCTAATATATATAGGTAGAGAACT............................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.....................................................TTACGACTTTATTGGATTTGCGGGGCA........................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
.............................................TTCGACTTTTACGACTTTATT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.......................................................ACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
........................................................CGACTTTATTGGATTTGTGGGGC............................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
...............................................................................AATTCTTTTTGCTTTGCCTC........................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...........................................................CTTTATTGGATTTGTGGGGC............................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................ATTTGCTGTATTTCGTCTAT.................. 20 0 1 1.00 1 1 0 0 0 0
....................................................TTTACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................................CTATCAGAAATATGTGGAGAT. 21 0 1 1.00 1 1 0 0 0 0
.....................................................TTACGACTTTATTGGATTTGTGGGGCA........................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
..................................................CTTTTACGACTTTATTGGATTTGTGGGG............................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.............ACTTCTGTCTAATATATATAGGTAGAG................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................................................................TCGTCTATCAGAAATATGTGGAGAT. 25 0 1 1.00 1 1 0 0 0 0
...................GTCTAATATATATAGGTAGA.................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
........................ATATATATAGGTAGAGAACTATTCGAC........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................ATTTGCTGTATTTCGTCTATCAG............... 23 0 1 1.00 1 1 0 0 0 0
.............................................................TTATTGGATTTGTGGGGCAATT........................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
.......................AATATATATAGGTAGAGAACT............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
.........................................ACTATTCGACTTTTACGACTTTATTGG....................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
............................ATATAGGTAGAGAACTATTCGA......................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................................CGTCTATCAGAAATATGTGGA.... 21 0 1 1.00 1 0 1 0 0 0
.........................................ACTATTCGACTTTTACGACTTT............................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
................................AGGTAGAGCACTATTGGAC........................................................................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0
........................................................CGCCATTATTGGATTTGTGG............................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
.................................................................................................TCATTGTGACACTAACTGGTG..................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1
............................ATGTAGGTAGAGCACTATTTG.......................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................................................................................TCTATCAGAAATACGTCGA.... 19 2 4 0.50 2 1 1 0 0 0
.................................................................................................TCGCTGTGTGCCTAACTGGTG..................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0
.................................................................................................TCGCTGTGAGCCTAACTGGT...................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0
................................................................................................................................TTGAGTTCGGATTGCGCT......................................................................................................... 18 2 7 0.14 1 1 0 0 0 0

Anti-sense strand reads

TCAAAGGAGACGATGAAGACAGATTATATATATCCATCTCTTGATAAGCTGAAAATGCTGAAATAACCTAAACACCCCGTTAAGAAAAACGAAACGGAGTAACACCCGGATTGACCACTCAGCAAGTCAACTCAAGTCTAACTCGAGTTTCAGACGGTTAACTATTAACCTTATAGACTTGTTATTGTTAAAAATAACGTCGAGAATACCCTATAAACGACATAAAGCAGATAGTCTTTATACACCTCTAC
**************************************************.....(((((((..........(((((((((...........))))))))).....(((.....))))))))))(((((((((((((...)))))))))......((((((...)))))).....)))).((((((......))))))...**************************************************
Read size # Mismatch Hit Count Total Norm Total V049
head
M046
female body
.................................CCATCTCTTGATAAGCTGGAAAT................................................................................................................................................................................................... 23 1 1 1.00 1 0 1
................................................................................................................................TTCTCAAGTCTAACTCGAGT....................................................................................................... 20 2 1 1.00 1 1 0
.....................................................................................................................................................................................................................TAAACCACCAAAAGCAGATA.................. 20 3 20 0.15 3 0 3
..............................................................................................................................TCGACTCAAGTTTTACTCGAGT....................................................................................................... 22 3 7 0.14 1 1 0
.........................................................................................................................................................................CTTGTAGACTTTTTCTTGTTA............................................................. 21 3 16 0.06 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6496:6546338-6546588 - dmo_1005 AGTTTCCTCTGCTACTTCTGTCTAATATATATAGGTAGAGAACTATTCGAC---TTTTACGACTTTATTGGATTTGTGGGGCAATTCTTTTTGCTTTGCCTC--------------ATTGTGGGCCTAACTGGTGAGTCGTT---------------CAGTTGAGTTCAG-----ATTGAGCTCAAAGTCTGCCAATTG-----ATAATTGGAATATCTGAACAATAACA--------------ATTTTTATTGCAGCTCTTATGGGATATTTGCTGTATTTCGTCTATCAGAAATATGTGGAGATG
droVir3 scaffold_12875:19510909-19511169 - dvi_7977 GGTGTAATGTGCTATTACTGTATGAATTTTATAACTGACGATTTCCTTTATTCATTTTACGACTTT------------GGGGAGTTTCTTTTGGCGTTACTAGTTTTGCTACTTTTAT--TGGCCGCCACAGGTTAGA------------AATTAATCAGCAGCAATCCTAGTCTGTTACGTTCAAAGTCTTTTGTATAAAATTATC----GCTTTAATGACT----------------AATGTACATTAATTCCAGCGTTTCTGGGCTACCTGATTTACTACGTGTACGAAGAGTATGCGAGGCTG
droGri2 scaffold_15245:18034099-18034352 + GGCGTCCTCTGCTATTGTAATATCGTATATATTACCAATGATCTTTTTGAT---TTTTACGATTTT------------GGATCGTTTTTCTTACTGTTCCTCGGATTTCTTGTTTTGT--TGGCAGCTACAGGTAAGTTGGTAATTGATAAATTAATAA------------------------------CCGCCGA-TG-----ATAAGGAAAATAAATAAATAATAATATAATCTCCAACTATACATTCATTGCAGGGCTTCTGGCCTACATAATGTATTGTGTATACCAAGAGTTTGAGGAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGTTTCCTCTGCTACTTCTGTCTAATATATATAGGTAGAGAACTATTCGAC---TTTTACGACTTTATTGGATTTGTGGGGCAATTCTTTTTGCTTTGCCTC--------------ATTGTGGGCCTAACTGGTGAGTCGTT---------------CAGTTGAGTTCAG-----ATTGAGCTCAAAGTCTGCCAATTG-----ATAATTGGAATATCTGAACAATAACA--------------ATTTTTATTGCAGCTCTTATGGGATATTTGCTGTATTTCGTCTATCAGAAATATGTGGAGATGSizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
............................................................GACTTTATTGGATTTGTGGGGCA................................................................................................................................................................................................................................2313.003200001
..............................................................CTTTATTGGATTTGTGGGGCA................................................................................................................................................................................................................................2113.003100011
..........................................................................................................................................................................................................................................................................GATATTTGCTGTATTTCGT......................1912.002200000
...............................................................TTTATTGGATTTGTGGGGCA................................................................................................................................................................................................................................2012.002001001
.........................................................TACGACTTTATTGGATTTGTGGGGCA................................................................................................................................................................................................................................2612.002100001
.GTTTCCTCTGCTACTTCTGTCT............................................................................................................................................................................................................................................................................................2212.002200000
............................................................GACTTTATTGGATTTGTGGGGC.................................................................................................................................................................................................................................2212.002200000
..........................................................................................................................................................................................................................................................................GATATTTGCTGTATTTCGTCTAT..................2312.002100001
.............................................................................................................................................................................................................................................................................................CTATCAGAAATATGTGGAGA..2011.001100000
.......................AATATATATAGGTAGAGAACTATTC...................................................................................................................................................................................................................................................................2511.001100000
................................................GAC---TTTTACGACTTTATTGG............................................................................................................................................................................................................................................2011.001100000
...................GTCTAATATATATAGGTAGAGA..........................................................................................................................................................................................................................................................................2211.001000001
............................................................GACTTTATTGGATTTGTGGGGCAATT.............................................................................................................................................................................................................................2611.001000001
...............................................................TTTATTGGATTTGTGGGG..................................................................................................................................................................................................................................1811.001100000
.GTTTCCTCTGCTACTTCTGTC.............................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................GTCTATCAGAAATATGTGGA....2011.001100000
...................GTCTAATATATATAGGTAGAGAACT.......................................................................................................................................................................................................................................................................2511.001100000
.............................................TTCGAC---TTTTACGACTTTATT..............................................................................................................................................................................................................................................2111.001100000
..........................................................ACGACTTTATTGGATTTGTGGGGCA................................................................................................................................................................................................................................2511.001100000
...........................................................CGACTTTATTGGATTTGTGGGGC.................................................................................................................................................................................................................................2311.001100000
..................................................................................AATTCTTTTTGCTTTGCCTC--------------...............................................................................................................................................................................................2011.001100000
..............................................................CTTTATTGGATTTGTGGGGC.................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................ATTTGCTGTATTTCGTCTAT..................2011.001100000
.......................................................TTTACGACTTTATTGGATTTGTGGGGCA................................................................................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................................................................................CTATCAGAAATATGTGGAGAT.2111.001100000
........................................................TTACGACTTTATTGGATTTGTGGGGCA................................................................................................................................................................................................................................2711.001000001
..................................................C---TTTTACGACTTTATTGGATTTGTGGGG..................................................................................................................................................................................................................................2811.001100000
.............ACTTCTGTCTAATATATATAGGTAGAG...........................................................................................................................................................................................................................................................................2711.001000001
.........................................................................................................................................................................................................................................................................................TCGTCTATCAGAAATATGTGGAGAT.2511.001100000
...................GTCTAATATATATAGGTAGA............................................................................................................................................................................................................................................................................2011.001100000
........................ATATATATAGGTAGAGAACTATTCGAC---.............................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................................ATTTGCTGTATTTCGTCTATCAG...............2311.001100000
................................................................TTATTGGATTTGTGGGGCAATT.............................................................................................................................................................................................................................2211.001100000
.......................AATATATATAGGTAGAGAACT.......................................................................................................................................................................................................................................................................2111.001000010
.........................................ACTATTCGAC---TTTTACGACTTTATTGG............................................................................................................................................................................................................................................2711.001100000
............................ATATAGGTAGAGAACTATTCGA.................................................................................................................................................................................................................................................................2211.001000001
..........................................................................................................................................................................................................................................................................................CGTCTATCAGAAATATGTGGA....2111.001000001
.........................................ACTATTCGAC---TTTTACGACTTT.................................................................................................................................................................................................................................................2211.001100000
droVir3
GGTGTAATGTGCTATTACTGTATGAATTTTATAACTGACGATTTCCTTTATTCATTTTACGACTTT------------GGGGAGTTTCTTTTGGCGTTACTAGTTTTGCTACTTTTAT--TGGCCGCCACAGGTTAGA------------AATTAATCAGCAGCAATCCTAGTCTGTTACGTTCAAAGTCTTTTGTATAAAATTATC----GCTTTAATGACT----------------AATGTACATTAATTCCAGCGTTTCTGGGCTACCTGATTTACTACGTGTACGAAGAGTATGCGAGGCTGSizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
............................................................GACTTT------------GGGGAGTTTCTTTTGGC....................................................................................................................................................................................................................2312.002000000000000000200000000000000000000000000000000000000000000000
......................................................................................................GTTTTGCTACTTTTAT--TGGCCGCC...................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................TTAATCAGCAGCAATCCT.........................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TACCTGATTTACTACGTGTACGAAGAGT...........2811.001000000000000000100000000000000000000000000000000000000000000000
......ATGTGCTATTACTGTATG...........................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........CTATTACTGTATGAATTTTATAACTGACGATTTCCTTTATT...............................................................................................................................................................................................................................................................4111.001000000000000000000000000000000000000000000000000000000010000000
.....AATGTGCTATTACTGTATGAATTTT.....................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................TTGCTACTTTTAT--TGGCCGCC...................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................CTTTATTCATTTTACGACTTT------------GGGGA................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
droGri2
GGCGTCCTCTGCTATTGTAATATCGTATATATTACCAATGATCTTTTTGAT---TTTTACGATTTT------------GGATCGTTTTTCTTACTGTTCCTCGGATTTCTTGTTTTGT--TGGCAGCTACAGGTAAGTTGGTAATTGATAAATTAATAA------------------------------CCGCCGA-TG-----ATAAGGAAAATAAATAAATAATAATATAATCTCCAACTATACATTCATTGCAGGGCTTCTGGCCTACATAATGTATTGTGTATACCAAGAGTTTGAGGAATTASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads

Generated: 05/17/2015 at 11:31 PM