dmo_1001

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCACTGGCCAGAGTCGATTATGCACGTTCTTTGAGAATCTGGGATGGAAGGTGAGTTTCGGTCAGCTAGAAATTTACAAAAAAATTTTAGATATAAGGCTAAATACTAAACAAAAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGCTCAGGGTATAAAAAACGTATATACTGGGCTTTTACCTGCGGCAGTTGTAAGTACTGTTTAATGGTATACATATATAAAAATAAATGAAAACACACAT ***********************************************************************************************************************************.....................((((..(((.........)))..))))********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V041 embryo	V049 head	V056 head	M060 embryo
................................GAGAATCTGGGATGGAAG.........................................................................................................................................................................................................	18	0	1	2.00	2	0	1	1	0	0	0
.........................GTTCTTTGAGAATCTGGGATGGA...........................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
.....................GCACGTTCTTTGAGAATCTGGGATGGAA..........................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0
............................CTTTGAGAATCTGGGATGGA...........................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
......................CACGTTCTTTGAGAATCTGGGATGGAAG.........................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
....................TGCACGTTCTTTGAGAATCTGGGAT..............................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................ATAAAAAACGTATATACTGG......................................................................	20	0	1	1.00	1	1	0	0	0	0	0
...............GATTATGCACGTTCTTTGAGA.......................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0
.........................GTTCTTTGAGAATCTGGGATGGAAGGT.......................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
............................CTTTGAGAATCTGGGATGGAAGGT.......................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
................................GAGAATCTGGGATGGACG.........................................................................................................................................................................................................	18	1	1	1.00	1	0	0	0	1	0	0
................................GAGAATCTGGGATGGAAGG........................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................CCATTGAAAATGGGCTCAGGG...........................................................................................	21	0	20	0.20	4	4	0	0	0	0	0
............................................................................................................................................................AGGGAATACAAAACGTATCTA..........................................................................	21	3	8	0.13	1	0	1	0	0	0	0
.....................................................................................................................................GATTTCCCATTGAAAATGGGCT................................................................................................	22	0	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................CCTGATTTCCCATTGAAAATGGGC.................................................................................................	24	0	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................CATTGAAAATGGGCTCAGGG...........................................................................................	20	0	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................ATTGAAAATGGGCTCAGGGTA.........................................................................................	21	0	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................ATTTCCCATTGAAAATGGCC.................................................................................................	20	1	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................TGATTTCCCATTGAAAATGGGCTCAGG............................................................................................	27	0	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................TGATTTCCCATTGAAAATGGGCTC...............................................................................................	24	0	20	0.05	1	0	0	0	0	0	1

GGTGACCGGTCTCAGCTAATACGTGCAAGAAACTCTTAGACCCTACCTTCCACTCAAAGCCAGTCGATCTTTAAATGTTTTTTTAAAATCTATATTCCGATTTATGATTTGTTTTTGTTTTGGTAATATGGGACTAAAGGGTAACTTTTACCCGAGTCCCATATTTTTTGCATATATGACCCGAAAATGGACGCCGTCAACATTCATGACAAATTACCATATGTATATATTTTTATTTACTTTTGTGTGTA ********************************************************************.....................((((..(((.........)))..))))***********************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
...........................................................................................................................................................................................TGGACGACGCCAATATTCATG...........................................	21	3	3	0.33	1	0	1
.............................................................................................................................ATATGGGACTAAAGGGTAACTTT.......................................................................................................	23	0	20	0.15	3	3	0
................................................................................................................TTGTGTTTTGGTAATATGGGACT....................................................................................................................	23	1	20	0.05	1	1	0
...............................................................................................................................ATGGGACTAAAGGGTAACTTTT......................................................................................................	22	0	20	0.05	1	1	0
...............................................................................................................................................CCTTTTACCCGAGTCCCATAT.......................................................................................	21	1	20	0.05	1	0	1
....................................................................................................................................................................................................................ATTACAATATGTATAAATTTT..................	21	2	20	0.05	1	1	0
................................................................................................................................................CTTTTACCCGAGTCCCATATT......................................................................................	21	0	20	0.05	1	1	0
.............................................................................................................................ATATGGGACTAAAGGGTAACTTTTAC....................................................................................................	26	0	20	0.05	1	1	0
............................................................................................................................AATATGGGACTAAAGGGTAAC..........................................................................................................	21	0	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6496:6248196-6248446 -	dmo_1001	CCACTGGCCAGAGTCGATTATGCACGTTCTTTGAGAATCTGGGATGGAAGGTGAGTTTCGGT--CAG-----------------------------CTA---------GAAAT----TTACAAAAAAATTTTAGATA-----------------------------------------------TAAGGCTA-AATACTAAACAAAAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGCTCAGGGTATAAAAAACGTATAT-------------------------------------------ACTGGGCTTTTACCTGCGGCAGTTGTAAGTACTGTTTAATGGTATACATATATA----AAAATAAATGAAAACACACAT
droVir3	scaffold_12875:19948018-19948280 +	dvi_8058	CAACTGGCCAGAGTCGCCTGTGCACCTTCTTTGAGAATCTGGGCTGGAAGGTGAGTGTCAGATGATAGCATTAAGT-AATTGATTTA-TTTGGGTGCCATTTTGGGGCAACTTTGAGCTGGGCTTGGTTGTTAG-------------------------------------------GC---TCTAAGGCTTCGACATT----------------------------------------------CAACAGC--TGACACACATATATACATATATATATATATGTTCTTAGCTGT-----TTGTTGTTATCCTGGGC---GGCCTGTGACAGTTGTAAGTACTGTCAGATGGTATATATAGTTT-----------------------GT
droGri2	scaffold_15245:11590014-11590262 -		CAACTGGCCAGAGTCGCCTGTGCACCTTCTTCGAGAATCTTGGCTGGAAGGTGAGTCTCACAATTCTGCACACATTTATATGTTTTAATTTGGGCTCTG-------------TTGAG-TGGGCTTGG------------------------------------------------------------------GATACTTCGCTGAGACAGAGCAA-----CATTTGTTGCCTCTTGCAAACTTGCAACGGC--AG---------CATAT-------------T-----GTGCTGTTTATGTTGTTCTTATGTTGCG----TACCTGTGGCAGTTGTAAGTACTGCCAAATGGTATGCTAGTTC-----------------------CAT
droWil2	scf2_1100000004954:3380462-3380726 +		CAACTGGACAATCGAGACTCTGCACATTCTTTGAGAATCTGGGATGGAAGGTGAGTCTTACT--TCT-----------------------------CCATTCAGGAGATGAATTCAATGAAACCAGACTGTTAGATATAAGACATAGAGAGGGAAAGGGAATTCACCCACCAGTGAGAAGAATATGAAGCTTCGTCTTT--------------------------------------TCTATTTGTTTTTGTTTTAATTAATA------T-------------TAGTTTTCGTTTT-----TTTTTTTTATGCTG-------------GGCAGTTGTAAGTAGTGCCCCT------------TTTGTCCATAACAAAAGAAAA-------
dp5	3:11581528-11581587 -		CAACGGGCCAGTCCCGTCTGTGCACGTTCTTTGAGAACCTGGGATGGAAGGTAAGTGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:6980596-6980655 -		CAACGGGCCAGTCCCGTCTGTGCACGTTCTTTGAGAACCTGGGATGGAAGGTAAGTGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:4204841-4204900 +		CGACCGGCCAGTCCCGTCTGTGCACCTTTTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395751:20946-21044 +		CGACTGGCCAGTCCCGCCTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCGGG-----------------------------------------------GGTG----TTGCAAGGGGATGCTAG-------------------------------------------GATAGACTAAGGCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------
droKik1	scf7180000302639:34533-34592 -		CGACGGGCCAGTCCCGATTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453583:60991-61050 -		CGACGGGACAGTCCCGATTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000489694:178623-178682 -		CGACTGGCCAGTCCCGCCTGTGCACCTTTTTTGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779872:72671-72730 -		CGACGGGCCAGTCCCGATTGTGCACCTTCTTTGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302292:2368118-2368177 -		CGACGGGACAGTCCCGGTTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000416016:389594-389653 +		CGACGGGACAGTCCCGGTTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409672:3346095-3346154 -		CGACAGGCCAGTCCCGTTTGTGCACCTTCTTTGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:14325703-14325762 -		CGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:14995554-14995613 -		CGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:11802432-11802491 -		CGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2R:14860771-14860830 +		CGACGGGACAGTCCCGCTTGTGTACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4845:8533503-8533562 -		CGACGGGACAGTCCCGCCTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CCACTGGCCAGAGTCGATTATGCACGTTCTTTGAGAATCTGGGATGGAAGGTGAGTTTCGGT--CAG-----------------------------CTA---------GAAAT----TTACAAAAAAATTTTAGATA-----------------------------------------------TAAGGCTA-AATACTAAACAAAAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGCTCAGGGTATAAAAAACGTATAT-------------------------------------------ACTGGGCTTTTACCTGCGGCAGTTGTAAGTACTGTTTAATGGTATACATATATA----AAAATAAATGAAAACACACAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................GAGAATCTGGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	0	0	1
.........................GTTCTTTGAGAATCTGGGATGGA......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................GCACGTTCTTTGAGAATCTGGGATGGAA.....................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
............................CTTTGAGAATCTGGGATGGA......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................CACGTTCTTTGAGAATCTGGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................TGCACGTTCTTTGAGAATCTGGGAT.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................ATAAAAAACGTATAT-------------------------------------------ACTGG..........................................................................	20	1	1.00	1	1	0	0	0	0	0
...............GATTATGCACGTTCTTTGAGA..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.........................GTTCTTTGAGAATCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............................CTTTGAGAATCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................GAGAATCTGGGATGGAAGG...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................CCATTGAAAATGGGCTCAGGG..........................................................................................................................................	21	20	0.20	4	4	0	0	0	0	0
.................................................................................................................................................................................................................................GATTTCCCATTGAAAATGGGCT...............................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CCTGATTTCCCATTGAAAATGGGC................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................CATTGAAAATGGGCTCAGGG..........................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................ATTGAAAATGGGCTCAGGGTA........................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TGATTTCCCATTGAAAATGGGCTCAGG...........................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TGATTTCCCATTGAAAATGGGCTC..............................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0

droVir3

CAACTGGCCAGAGTCGCCTGTGCACCTTCTTTGAGAATCTGGGCTGGAAGGTGAGTGTCAGATGATAGCATTAAGT-AATTGATTTA-TTTGGGTGCCATTTTGGGGCAACTTTGAGCTGGGCTTGGTTGTTAG-------------------------------------------GC---TCTAAGGCTTCGACATT----------------------------------------------CAACAGC--TGACACACATATATACATATATATATATATGTTCTTAGCTGT-----TTGTTGTTATCCTGGGC---GGCCTGTGACAGTTGTAAGTACTGTCAGATGGTATATATAGTTT-----------------------GT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................TGCACCTTCTTTGAGAATCTG.............................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AGC--TGACACACATATATAC........................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GTTGTTATCCTGGGC---GGCCTGTGACAGTTGTAAGTACTGT............................................	40	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................GAGAATCTGGGCTGGAAG....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................A-TTTGGGTGCCATTTTGGGGC..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CAACTGGCCAGAGTCGCCT...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGT-----TTGTTGTTATCCTGGGC---GGCC.................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGAGTCGCCTGTGCACCTTCT........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAGTCGCCTGTGCACCTTCTTTGA....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTGAGAATCTGGGCTGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTGAGAATCTGGGCTGGAAGG...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGAGCTGGGCTTGGTTGTTAG-------------------------------------------GC---T...............................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGAGTCGCCTGTGCACCTTCTTT......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TTTGAGCTGGGCTTGGTT.....................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATATGTTCTTAGCTGT-----TTGTT....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTCTTTGAGAATCTGGGCTGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................TTGAGAATCTGGGCTGGAA.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CGACATT----------------------------------------------CAACAGC--TGACAC..................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CAACTGGCCAGAGTCGCCTGTGC...............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TTGAGCTGGGCTTGGTTGTTAG-------------------------------------------T....................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................GTGTCAGATGATAGCATTAAGT-.........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CTGGGCTTGGTTGTTAG-------------------------------------------GC---TC..............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAATCTGGGCTGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CCAGAGTCGCCTGTGCACCTT..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GGCCAGAGTCGCCTGTGCACC............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATGGTATATATAGTTT-----------------------GT	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........CAGAGTCGCCTGTGCACCTT..........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TTTA-TTTGGGTGCCATTTT...............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GATAGCATTAAGT-AATTGAT..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TGTGCACCTTCTTTGAGAAT................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................A-TTTGGGTGCCATTTTGGGGCA.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GGCAACTTTGAGCTGGGCTTG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GCTGGGCTTGGTTGTTAG-------------------------------------------G....................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................T----------------------------------------------CAACAGC--TGACACACATATAT..........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................T-----TTGTTGTTATCCTGGGC---GGC..................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CAACTGGCCAGAGTCGCCTGT.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAATCTGGGCTGGAAGGTATT...............................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CAACTGGCCAGAGTCGCCTGTGCACCTTCTTCGAGAATCTTGGCTGGAAGGTGAGTCTCACAATTCTGCACACATTTATATGTTTTAATTTGGGCTCTG-------------TTGAG-TGGGCTTGG------------------------------------------------------------------GATACTTCGCTGAGACAGAGCAA-----CATTTGTTGCCTCTTGCAAACTTGCAACGGC--AG---------CATAT-------------T-----GTGCTGTTTATGTTGTTCTTATGTTGCG----TACCTGTGGCAGTTGTAAGTACTGCCAAATGGTATGCTAGTTC-----------------------CAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................AGAATCTTGGCTGGAAGTG..................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	1

droWil2

CAACTGGACAATCGAGACTCTGCACATTCTTTGAGAATCTGGGATGGAAGGTGAGTCTTACT--TCT-----------------------------CCATTCAGGAGATGAATTCAATGAAACCAGACTGTTAGATATAAGACATAGAGAGGGAAAGGGAATTCACCCACCAGTGAGAAGAATATGAAGCTTCGTCTTT--------------------------------------TCTATTTGTTTTTGTTTTAATTAATA------T-------------TAGTTTTCGTTTT-----TTTTTTTTATGCTG-------------GGCAGTTGTAAGTAGTGCCCCT------------TTTGTCCATAACAAAAGAAAA-------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..ACTGGACAATCGAGACTCTGCACA............................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0
........CAATCGAGACTCTGCACATT..........................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0
.........AATCGAGACTCTGCACATT..........................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
...........TCGAGACTCTGCACATTCTT.......................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
.AACTGGACAATCGAGACTCTGCACATTCT........................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ATGCTG-------------GGCAGTTGTAAGT.................................................	19	1	2.00	2	0	0	2	0	0
..............................................................................................................................................................................GAGAAGAATATGAAGCTTC.....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............................CTTTGAGAATCTGGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................ATGCTG-------------GGCAGTTGTAAGTA................................................	20	1	1.00	1	0	0	1	0	0
...............................TGAGAATCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
......GACAATCGAGACTCTGCACATTCTT.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
CAACTGGACAATCGAGAC....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
..............................................................................................................................................CATAGAGAGGGAAAGGGA......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................TTTTTATGCTG-------------GGCAGTTGTA....................................................	21	1	1.00	1	0	1	0	0	0
..................................GAATCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
............................CTTTGAGAATCTGGGATGGAAGGTGAGTC.............................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
.AACTGGACAATCGAGACTCTGCACA............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
............................CTTTGAGAATCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................................................AGTCTTACT--TCT-----------------------------CCATTCAGG.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.........................ATTCTTTGAGAATCTGGGATGGAA.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
......GACAATCGAGACTCTGCACA............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
CAACTGGACAATCGAGACTCTGCG..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.........................................................................................................................................TAAGACATAGAGAGGGAAAGG........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........ATCGAGACTCTGCACATT..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
...................................................................................................................AATGAAACCAGACTGTTAGAT..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..............................TTGAGAATCTGGGATGGAAGGTTTT...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..ACTGGACAATCGAGACTCTGCAC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
..ACTGGACAATCGAGACTCTGCA..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
..............................................................................................................................................CATAGAGAGGGAAAGGGAATTCACCC..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
............................CTTTGAGAATCTGGGATGGA......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
CAACTGGACAATCGAGACTCTGCACA............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.........................ATTCTTTGAGAATCTGGGA..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.AACTGGACAATCGAGACTCTGCACATT..........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
...CTGGACAATCGAGACTCTGC...............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
................................GAGAATCTGGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................CTTTGAGAATCTGGGATGGAAGG...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
.AACTGGACAATCGAGACTCTGCACAT...........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0

dp5

CAACGGGCCAGTCCCGTCTGTGCACGTTCTTTGAGAACCTGGGATGGAAGGTAAGTGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............CCGTCTGTGCACGTTCTTTGA....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................GAGAACCTGGGATGGAAGGTGTT...............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................GAGAACCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................TGAGAACCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....GGGCCAGTCCCGTCTGTGCA..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GGCCAGTCCCGTCTGTGCACGTTCTTTGA....................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................TGAGAACCTGGGATGGAAGGTGTT...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................TGAGAACCTGGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

CAACGGGCCAGTCCCGTCTGTGCACGTTCTTTGAGAACCTGGGATGGAAGGTAAGTGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................CTTTGAGAACCTGGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
...........TCCCGTCTGTGCACGTTCTTTGAGAACCT..............................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
............................CTTTGAGAACCTGGGATGGAA.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
................................GAGAACCTGGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
...........................TCTTTGAGAACCTGGGATGG.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..................TGTGCACGTTCTTTGAGAACCTGGGAT.........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1

droAna3

CGACCGGCCAGTCCCGTCTGTGCACCTTTTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................TTTCGAGAACCTTGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

CGACTGGCCAGTCCCGCCTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCGGG-----------------------------------------------GGTG----TTGCAAGGGGATGCTAG-------------------------------------------GATAGACTAAGGCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGACGGGCCAGTCCCGATTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGACGGGACAGTCCCGATTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGACTGGCCAGTCCCGCCTGTGCACCTTTTTTGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGACGGGCCAGTCCCGATTGTGCACCTTCTTTGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGACGGGACAGTCCCGGTTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGACGGGACAGTCCCGGTTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGACAGGCCAGTCCCGTTTGTGCACCTTCTTTGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..ACGGGACAGTCCCGCTTGTGCAC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20
..........GTCCCGCTTGTGCACTTTCTT.......................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GTCCCGCTTGTGCACTTTCTTCG.....................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAAACCTTGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTCGAAAACCTTGGATGGAAGGTAT................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GACAGTCCCGCTTGTGCACTTTCTTC......................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................ACTTTCTTCGAAAACCTTGGATGGAA.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTCTTCGAAAACCTTGGAT.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CGCTTGTGCACTTTCTTCGAAAACCTTG............................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTCGAAAACCTTGGATGGAA.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTCTTCGAAAACCTTGGATGGAAGG...................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CACTTTCTTCGAAAACCTTGGATGGA......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GACAGTCCCGCTTGTGCACTTT..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GCACTTTCTTCGAAAACCTTGGATGGA......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CGAAAACCTTGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSim2

CGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............CGCTTGTGCACTTTCTTCGAA...................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0
.......................ACTTTCTTCGAAAACCTTGGATG........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................GCACTTTCTTCGAAA..................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

CGACGGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................TGCACTTTCTTCGAAAACCTTGGATG........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
..................................AAACCTTGGATGGAAGGTGAGTGT............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.........................TTTCTTCGAAAACCTTGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0

droYak3

CGACGGGACAGTCCCGCTTGTGTACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................GAGAACCTTGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	20	1	10.00	10	0	0	0	0	0	0	10	0	0	0	0
............................CTTCGAGAACCTTGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	1	0	0	0	7	0	0	0	0
......GACAGTCCCGCTTGTGTACCTTCTTCGA....................................................................................................................................................................................................................................................................................................................................................................	28	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
............................CTTCGAGAACCTTGGATGGAAGGC..................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...........................TCTTCGAGAACCTTGGATGGAAGGTGAGT..............................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GACAGTCCCGCTTGTGTACCTT..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................CGAGAACCTTGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................GAGAACCTTGGATGGAAGG...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CTTCGAGAACCTTGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CTTCGAGAACCTTGGATGG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................TCGAGAACCTTGGATGGAAGGT..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................CGAGAACCTTGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CGACGGGACAGTCCCGCCTGTGCACCTTCTTCGAGAACCTTGGATGGAAGGTGAGTGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................TCTTCGAGAACCTTGGATGGA......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
............................CTTCGAGAACCTTGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
..............................TCGAGAACCTTGGATGGAAG....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................CTTCGAGAACCTTGGATGG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
......GACAGTCCCGCCTGTGCACCTTCTTCGA....................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
....GGGACAGTCCCGCCTGTGCAC.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
............................CTTCGAGAACCTTGGATGGA......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

-9.9	-9.8	-9.6	-9.5

dmo_1001

scaffold_6496:6248246-6248396 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads