ID:

dmo-mir-6-3

 Coordinate:

scaffold_6496:20935959-20936036 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.9 -31.8 -31.8

Flybase annnotation

utr3 [utr3_minus_3613]; pre_miRNA [Dmoj\mir-6-3-RM]; miRNA [Dmoj\miR-6-3-RA]

No Repeatable elements found

mature

  1. dmo-mir-6-3  scaffold_6496:20935964-20935985 -
  2. dmo-mir-6-2  scaffold_6496:20936142-20936163 -
  3. dmo-mir-6-1  scaffold_6496:20936318-20936339 -
star

Sense Strand Reads

ATCTTAAGTATGTGATTTGTTCAGTTTCAAATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCGAATTCATTTAATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAGAATGAAGAATTTCCAAAGATCCAATCGAGA

******************************************(((((.(((((.(((((((((((.(((((((.(((((((..((..........)).)))))))))))))).))))))))))).))))))))))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V110

male body
.....................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................... 22 0 3 175659.67 526979 526946 1 30 2
.....................................................................................................TATCACAGTGGCTGTTCTTTT........................................................ 21 0 3 71420.67 214262 214242 1 14 5
.....................................................................................................TATCACAGTGGCTGTTCTTTTTT...................................................... 23 0 1 20128.00 20128 20127 0 0 1
.....................................................................................................TGTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 12004.33 36013 36013 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................... 23 1 3 9565.33 28696 28690 0 6 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTT........................................................ 21 1 3 5603.33 16810 16810 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTT......................................................... 20 0 3 5461.67 16385 16380 0 3 2
.....................................................................................................TATTACAGTGGCTGTTCTTTTT....................................................... 22 1 3 5223.00 15669 15669 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................... 22 1 3 4979.00 14937 14936 0 1 0
.....................................................................................................TACCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 3858.67 11576 11576 0 0 0
.....................................................................................................TATTACAGTGGCTGTTCTTTT........................................................ 21 1 3 2029.67 6089 6089 0 0 0
.....................................................................................................TTTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 1942.67 5828 5828 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTTT........................................................ 21 1 3 1549.33 4648 4648 0 0 0
.....................................................................................................TATCACAGCGGCTGTTCTTTTT....................................................... 22 1 3 1273.67 3821 3821 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTC........................................................ 21 1 3 1153.67 3461 3461 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTTTT...................................................... 23 1 1 887.00 887 887 0 0 0
.....................................................................................................TTTCACAGTGGCTGTTCTTTT........................................................ 21 1 3 819.67 2459 2459 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTCC..................................................... 24 2 3 749.33 2248 2248 0 0 0
.....................................................................................................TATCACAGTGGCTTTTCTTTTT....................................................... 22 1 3 722.00 2166 2166 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 678.00 2034 2034 0 0 0
.....................................................................................................TATTACAGTGGCTGTTCTTTTTT...................................................... 23 1 1 614.00 614 614 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTC......................................................... 20 1 3 612.00 1836 1836 0 0 0
.....................................................................................................CATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 598.33 1795 1795 0 0 0
.....................................................................................................GATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 593.00 1779 1779 0 0 0
.........................................................AGAGAACGTTCGCTGTTGATGT................................................................................................... 22 0 1 586.00 586 382 204 0 0
.........................................................AGAGAACGTTCGCTGTTGATGTA.................................................................................................. 23 0 1 565.00 565 418 146 1 0
.....................................................................................................TATCACAGCGGCTGTTCTTTT........................................................ 21 1 3 488.33 1465 1465 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTTTTT...................................................... 23 1 1 487.00 487 487 0 0 0
......................................................................................................ATCACAGTGGCTGTTCTTTTTT...................................................... 22 0 1 463.00 463 463 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTT......................................................... 20 1 3 451.33 1354 1354 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTTC..................................................... 24 1 1 402.00 402 402 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 395.00 1185 1185 0 0 0
......................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................... 21 0 3 393.67 1181 1179 0 2 0
.....................................................................................................AATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 373.67 1121 1121 0 0 0
.....................................................................................................TATCTCAGTGGCTGTTCTTTTT....................................................... 22 1 3 370.67 1112 1112 0 0 0
.....................................................................................................TATCACAGTTGCTGTTCTTTTT....................................................... 22 1 3 349.33 1048 1047 1 0 0
....................................................................................................CTATCACAGTGGCTGTTCTTTTT....................................................... 23 1 3 348.33 1045 1045 0 0 0
.....................................................................................................TATCACAGTGGCTGCTCTTTTT....................................................... 22 1 3 286.67 860 854 6 0 0
.....................................................................................................TATCACAGTGGCTGTTCTT.......................................................... 19 0 3 276.67 830 828 1 0 1
.....................................................................................................TATTACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 271.67 815 815 0 0 0
.....................................................................................................TGTTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 271.67 815 815 0 0 0
.....................................................................................................TATCACATTGGCTGTTCTTTTT....................................................... 22 1 3 251.33 754 754 0 0 0
.....................................................................................................CATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 248.00 744 744 0 0 0
.....................................................................................................TATCACACTGGCTGTTCTTTTT....................................................... 22 1 3 243.67 731 731 0 0 0
.....................................................................................................GATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 239.33 718 718 0 0 0
.....................................................................................................TATCACAGTGGCTTTCTTTTT........................................................ 21 3 10 238.00 2380 2380 0 0 0
.....................................................................................................TATCACAGTCGCTGTTCTTTTT....................................................... 22 1 3 237.67 713 711 2 0 0
.....................................................................................................TATCACAGTGGCTTTTCTTTT........................................................ 21 1 3 233.33 700 700 0 0 0
.....................................................................................................TATCACAGAGGCTGTTCTTTTT....................................................... 22 1 3 232.00 696 696 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................... 23 1 3 230.33 691 691 0 0 0
.....................................................................................................TATCACAGGGGCTGTTCTTTTT....................................................... 22 1 3 218.33 655 655 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 213.00 639 639 0 0 0
.....................................................................................................TATCACAGTGGATGTTCTTTTT....................................................... 22 1 3 212.00 636 636 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTTT..................................................... 24 1 2 181.50 363 361 0 2 0
.........................................................AGAGAACGTTCGCTGTTGATG.................................................................................................... 21 0 1 171.00 171 107 64 0 0
.....................................................................................................TATCACAGTGGCTGTCCTTTTT....................................................... 22 1 3 166.67 500 500 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCCTTTT....................................................... 22 1 3 165.67 497 497 0 0 0
.....................................................................................................TATCTCAGTGGCTGTTCTTTT........................................................ 21 1 3 162.67 488 488 0 0 0
.....................................................................................................TATCACAGTAGCTGTTCTTTTT....................................................... 22 1 3 153.00 459 437 22 0 0
.....................................................................................................AATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 148.67 446 446 0 0 0
.....................................................................................................TATCACGGTGGCTGTTCTTTTT....................................................... 22 1 3 146.33 439 435 4 0 0
.....................................................................................................TATCACAGTTGCTGTTCTTTT........................................................ 21 1 3 146.00 438 438 0 0 0
.....................................................................................................TTTCACAGTGGCTGTTCTTTTTT...................................................... 23 1 1 146.00 146 146 0 0 0
.....................................................................................................TATTACAGTGGCTGTTCTTTTC....................................................... 22 2 3 144.67 434 434 0 0 0
.....................................................................................................TATTACAGTGGCTGTTCTTT......................................................... 20 1 3 144.00 432 432 0 0 0
.....................................................................................................TATCACAGTGGCTGCTCTTTT........................................................ 21 1 3 143.67 431 423 8 0 0
....................................................................................................CTATCACAGTGGCTGTTCTTTT........................................................ 22 1 3 142.33 427 427 0 0 0
.....................................................................................................TATCACAGTGACTGTTCTTTTT....................................................... 22 1 3 139.00 417 400 17 0 0
.....................................................................................................TATCACAGTGGCTGATCTTTTT....................................................... 22 1 3 138.33 415 414 1 0 0
.....................................................................................................TATCACAGCGGCTGTTCTTTTTT...................................................... 23 1 1 137.00 137 137 0 0 0
......................................................................................................ATCACAGTGGCTGTTCTTTT........................................................ 20 0 3 132.33 397 396 0 1 0
.....................................................................................................TATCACAGTGGCTGTTTTTTTT....................................................... 22 1 3 129.67 389 389 0 0 0
.........................................................AGAGAACGTTCGCTGTTGATGC................................................................................................... 22 1 1 129.00 129 129 0 0 0
.....................................................................................................TGTTACAGTGGCTGTTCTTTT........................................................ 21 2 3 125.67 377 377 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTGT....................................................... 22 1 3 125.67 377 377 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 123.00 369 369 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTT......................................................... 20 1 3 118.33 355 355 0 0 0
.....................................................................................................TATCACATTGGCTGTTCTTTT........................................................ 21 1 3 116.67 350 350 0 0 0
........................................................AAGAGAACGTTCGCTGTTGATGT................................................................................................... 23 0 1 116.00 116 71 45 0 0
.....................................................................................................TATCACAGTGGCTGTGCTTTTT....................................................... 22 1 3 113.67 341 341 0 0 0
.....................................................................................................TTTCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 110.33 331 331 0 0 0
.....................................................................................................TATCACACTGGCTGTTCTTTT........................................................ 21 1 3 110.33 331 331 0 0 0
.....................................................................................................TATCGCAGTGGCTGTTCTTTTT....................................................... 22 1 3 108.67 326 326 0 0 0
.....................................................................................................TATCAGAGTGGCTGTTCTTTTT....................................................... 22 1 3 105.33 316 316 0 0 0
.....................................................................................................TATCATAGTGGCTGTTCTTTTT....................................................... 22 1 3 104.00 312 312 0 0 0
.....................................................................................................TATCACAGTGCCTGTTCTTTTT....................................................... 22 1 3 101.00 303 303 0 0 0
.....................................................................................................TATCACAGTGGATGTTCTTTT........................................................ 21 1 3 100.00 300 300 0 0 0
.....................................................................................................TATCACAGTCGCTGTTCTTTT........................................................ 21 1 3 98.67 296 296 0 0 0
.........................................................ATAGAACGTTCGCTGTTGATGT................................................................................................... 22 1 1 97.00 97 97 0 0 0
.........................................................ATAGAACGTTCGCTGTTGATGTA.................................................................................................. 23 1 1 91.00 91 91 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................... 22 1 3 89.67 269 269 0 0 0
.......................................................................................................TCACAGTGGCTGTTCTTTTT....................................................... 20 0 3 89.67 269 269 0 0 0
.....................................................................................................TATCACAGTTGCTGTTCTTTTTT...................................................... 23 1 1 89.00 89 89 0 0 0
.....................................................................................................TATCACAGAGGCTGTTCTTTT........................................................ 21 1 3 88.00 264 264 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTC........................................................ 21 2 3 88.00 264 264 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTCTT....................................................... 22 1 3 86.67 260 260 0 0 0
.....................................................................................................TATCACAGGGGCTGTTCTTTT........................................................ 21 1 3 83.33 250 250 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCCTTT........................................................ 21 1 3 78.67 236 236 0 0 0
.....................................................................................................TATCACAGTGGCCGTTCTTTTT....................................................... 22 1 3 78.00 234 232 2 0 0
.....................................................................................................TATCACAATGGCTGTTCTTTTT....................................................... 22 1 3 75.00 225 225 0 0 0
.....................................................................................................TATCACAGTGGCTGATCTTTT........................................................ 21 1 3 74.67 224 224 0 0 0
.....................................................................................................TATCACAGTGGCTGTCCTTTT........................................................ 21 1 3 74.00 222 222 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTCTTT....................................................... 22 1 3 73.67 221 221 0 0 0
.....................................................................................................TATCACAGTGTCTGTTCTTTTT....................................................... 22 1 3 70.33 211 211 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTTCC.................................................... 25 2 1 70.00 70 70 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTCC...................................................... 23 2 3 68.67 206 206 0 0 0
.....................................................................................................TTTCACAGTGGCTGTTCTTT......................................................... 20 1 3 68.33 205 205 0 0 0
.....................................................................................................TATCACAGTAGCTGTTCTTTT........................................................ 21 1 3 65.67 197 185 12 0 0
........................................................................................................CACAGTGGCTGTTCTTTTT....................................................... 19 0 3 65.33 196 196 0 0 0
.....................................................................................................TATTACAGCGGCTGTTCTTTTT....................................................... 22 2 3 64.00 192 192 0 0 0
.....................................................................................................TATCACAGTGGCTGTTGTTTTT....................................................... 22 1 3 64.00 192 191 1 0 0
.....................................................................................................CATCACAGTGGCTGTTCTTTTTT...................................................... 23 1 1 64.00 64 64 0 0 0
.....................................................................................................TATCACGGTGGCTGTTCTTTT........................................................ 21 1 3 63.67 191 185 6 0 0
.....................................................................................................TGTCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 63.00 189 189 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCCTTTTT...................................................... 23 1 1 62.00 62 62 0 0 0
.....................................................................................................TATCACAGCGGCTGTTCTTTTTC...................................................... 23 2 3 60.67 182 182 0 0 0
......................................................................................................AGCACAGTGGCTGTTCTTTTT....................................................... 21 1 3 60.00 180 180 0 0 0
.....................................................................................................GATCACAGTGGCTGTTCTTTTTT...................................................... 23 1 1 60.00 60 60 0 0 0
.....................................................................................................TATCACAGTGACTGTTCTTTT........................................................ 21 1 3 59.67 179 171 8 0 0
....................................................................................................CGATCACAGTGGCTGTTCTTTTT....................................................... 23 2 3 59.33 178 178 0 0 0
.....................................................................................................TTTTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 57.00 171 171 0 0 0
.....................................................................................................TATCACAGTGGCTATTCTTTTT....................................................... 22 1 3 56.67 170 169 1 0 0
......................................................................................................AGCACAGTGGCTGTTCTTTTTT...................................................... 22 1 1 56.00 56 56 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.................................................... 25 3 3 53.67 161 161 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCGTTTT....................................................... 22 1 3 53.33 160 160 0 0 0
.....................................................................................................TATCGCAGTGGCTGTTCTTTT........................................................ 21 1 3 53.00 159 159 0 0 0
.....................................................................................................TATCACAGTCGCTGTTCTTTTTT...................................................... 23 1 1 52.00 52 51 1 0 0
.....................................................................................................TATCACAGTGGCTTTTCTTTTTT...................................................... 23 1 1 52.00 52 52 0 0 0
.....................................................................................................TATCACAGTGGCTGGTCTTTTT....................................................... 22 1 3 50.33 151 139 11 0 1
.....................................................................................................TTTCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 49.67 149 149 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTGTT....................................................... 22 1 3 49.00 147 147 0 0 0
.........................................................................................................ACAGTGGCTGTTCTTTTT....................................................... 18 0 3 47.67 143 143 0 0 0
.....................................................................................................TACCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 47.67 143 143 0 0 0
........................................................AAGAGAACGTTCGCTGTTGATG.................................................................................................... 22 0 1 47.00 47 28 19 0 0
.....................................................................................................TATCACAGTGCCTGTTCTTTT........................................................ 21 1 3 47.00 141 140 1 0 0
.....................................................................................................TGTCACAGTGGCTTTTCTTTTT....................................................... 22 2 3 47.00 141 141 0 0 0
.....................................................................................................TATCTCAGTGGCTGTTCTTTTTT...................................................... 23 1 1 47.00 47 47 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTG........................................................ 21 1 3 46.67 140 140 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTC......................................................... 20 2 3 46.33 139 139 0 0 0
.....................................................................................................TATCACAGTGGTTGTTCTTTTT....................................................... 22 1 3 46.00 138 134 4 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTTTTT.................................................... 25 1 1 46.00 46 46 0 0 0
.....................................................................................................TACTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 45.67 137 137 0 0 0
.....................................................................................................TGCCACAGTGGCTGTTCTTTTT....................................................... 22 2 3 45.67 137 137 0 0 0
.....................................................................................................TATCACAGTGGCTGTGCTTTT........................................................ 21 1 3 45.00 135 135 0 0 0
.....................................................................................................TATCATAGTGGCTGTTCTTTT........................................................ 21 1 3 44.67 134 134 0 0 0
.....................................................................................................TATCACAGTGGGTGTTCTTTTT....................................................... 22 1 3 44.00 132 131 1 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTTTCC..................................................... 24 3 3 43.67 131 131 0 0 0
....................................................................................................CTATCACAGTGGCTGTTCTTTTTT...................................................... 24 1 1 42.00 42 42 0 0 0
.....................................................................................................TATCAGAGTGGCTGTTCTTTT........................................................ 21 1 3 41.33 124 124 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTCT........................................................ 21 1 3 41.00 123 123 0 0 0
.....................................................................................................AATCACAGTGGCTGTTCTTTTTT...................................................... 23 1 1 41.00 41 41 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTCTTT...................................................... 23 1 1 41.00 41 41 0 0 0
.....................................................................................................TAACACAGTGGCTGTTCTTTTT....................................................... 22 1 3 40.67 122 122 0 0 0
.....................................................................................................TATCACAGTGGCCGTTCTTTT........................................................ 21 1 3 39.33 118 118 0 0 0
.....................................................................................................TATCACAGTGGCTGTTTTTTT........................................................ 21 1 3 38.33 115 115 0 0 0
.....................................................................................................TGTCTCAGTGGCTGTTCTTTTT....................................................... 22 2 3 38.00 114 114 0 0 0
.....................................................................................................TATCACAGTGCCTGTTCTTTTTT...................................................... 23 1 1 38.00 38 38 0 0 0
.....................................................................................................TATCACAGTGGCTTTTCTTTTTC...................................................... 23 2 3 37.67 113 113 0 0 0
.....................................................................................................TATCACAGCGGCTGTTCTTT......................................................... 20 1 3 36.33 109 109 0 0 0
.....................................................................................................TATCACAGTGGCTGTACTTTTT....................................................... 22 1 3 36.33 109 109 0 0 0
.....................................................................................................TATCACAGTGTCTGTTCTTTT........................................................ 21 1 3 34.67 104 104 0 0 0
.....................................................................................................TATCACAGTGGCAGTTCTTTTT....................................................... 22 1 3 34.33 103 103 0 0 0
.....................................................................................................TATCACAGTGGCTGTTATTTTT....................................................... 22 1 3 34.33 103 103 0 0 0
.....................................................................................................CATCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 34.00 102 102 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTCTT........................................................ 21 1 3 33.33 100 100 0 0 0
...................................................................................................TCTATCACAGTGGCTGTTCTTTTT....................................................... 24 1 3 31.67 95 95 0 0 0
.......................................................................................................TCACAGTGGCTGTTCTTTT........................................................ 19 0 3 31.33 94 94 0 0 0
.....................................................................................................TGTCACAGCGGCTGTTCTTTT........................................................ 21 2 3 31.33 94 94 0 0 0
....................................................................................................ATATCACAGTGGCTGTTCTTT......................................................... 21 0 3 31.33 94 94 0 0 0
.....................................................................................................TATCACAGAGGCTGTTCTTTTTT...................................................... 23 1 1 31.00 31 31 0 0 0
.....................................................................................................TATCACAGTGGCTGTTTTTTTTT...................................................... 23 1 1 31.00 31 31 0 0 0
.....................................................................................................TATCACAATGGCTGTTCTTTT........................................................ 21 1 3 30.33 91 91 0 0 0
.....................................................................................................TATCACAGTGGCTGCTCTTTTTT...................................................... 23 1 1 30.00 30 29 1 0 0
.....................................................................................................TATCACAGTGGCTGTTCTCTTTT...................................................... 23 1 1 30.00 30 30 0 0 0
.....................................................................................................TAGCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 30.00 90 90 0 0 0
.....................................................................................................TATCACAGTGGATGTTCTTTTTT...................................................... 23 1 1 30.00 30 29 0 1 0
.....................................................................................................TATCACAGTGGCTGTTCTTATT....................................................... 22 1 3 29.67 89 89 0 0 0
.....................................................................................................TATCACAGGGGCTGTTCTTTTTT...................................................... 23 1 1 29.00 29 29 0 0 0
.....................................................................................................TATCACAGTGGCTGGTCTTTT........................................................ 21 1 3 29.00 87 80 7 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................... 22 1 3 28.67 86 86 0 0 0
........................................................................................................CACAGTGGCTGTTCTTTT........................................................ 18 0 3 28.33 85 85 0 0 0
......................................................................................................ATAACAGTGGCTGTTCTTTTTT...................................................... 22 1 1 28.00 28 28 0 0 0
.....................................................................................................TATCACAGTTGCTGTTCTTTTTC...................................................... 23 2 3 28.00 84 84 0 0 0
.....................................................................................................GATCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 27.67 83 83 0 0 0
.....................................................................................................TATCACAGTGGCTCTTCTTTTT....................................................... 22 1 3 27.00 81 80 1 0 0
.........................................................ATAGAACGTTCGCTGTTGATGC................................................................................................... 22 2 1 27.00 27 27 0 0 0
.....................................................................................................TATCACACTGGCTGTTCTTTTTT...................................................... 23 1 1 27.00 27 27 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTGTTT....................................................... 22 1 3 26.67 80 80 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCT........................................................... 18 0 3 26.33 79 79 0 0 0
.....................................................................................................TATCACAGTGGCTTTTCTTTTC....................................................... 22 2 3 26.00 78 78 0 0 0
.....................................................................................................TATTACAGTGGCTGTTCTTTC........................................................ 21 2 3 26.00 78 78 0 0 0
.....................................................................................................TATCACAGCGGCTGTTCTTTTC....................................................... 22 2 3 25.33 76 76 0 0 0
.....................................................................................................TATCACAGTGTCTGTTCTTTTTT...................................................... 23 1 1 24.00 24 24 0 0 0
.........................................................AGAGAACGTTCGCTGTTGATGTAA................................................................................................. 24 1 1 24.00 24 18 6 0 0
.....................................................................................................TATCACAGTGGTTGTTCTTTT........................................................ 21 1 3 23.67 71 70 1 0 0
.....................................................................................................TATCACAGTGGCTGTTGTTTT........................................................ 21 1 3 23.33 70 69 1 0 0
.....................................................................................................TATTACAGTGGCTGCTCTTTTT....................................................... 22 2 3 23.33 70 70 0 0 0
.....................................................................................................TATCACAGTGGCTATTCTTTT........................................................ 21 1 3 23.00 69 68 1 0 0
.........................................................ATAGAACGTTCGCTGTTGATG.................................................................................................... 21 1 1 23.00 23 23 0 0 0
.....................................................................................................TATCTCAGTGGCTGTTCTTTTTC...................................................... 23 2 3 22.67 68 68 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTCT....................................................... 22 1 3 22.67 68 68 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTGT........................................................ 21 1 3 22.67 68 68 0 0 0
.....................................................................................................TGTCACATTGGCTGTTCTTTTT....................................................... 22 2 3 22.67 68 68 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTTC........................................................ 21 2 3 22.33 67 67 0 0 0
........................................................AAGAGAACGTTCGCTGTTGATGC................................................................................................... 23 1 1 22.00 22 22 0 0 0
.....................................................................................................TATTACAGCGGCTGTTCTTTT........................................................ 21 2 3 21.67 65 65 0 0 0
.....................................................................................................TTTTACAGTGGCTGTTCTTTT........................................................ 21 2 3 21.33 64 64 0 0 0
.....................................................................................................CATCACAGTGGCTGTTCTTT......................................................... 20 1 3 21.00 63 63 0 0 0
.....................................................................................................TATCACATTGGCTGTTCTTTTTT...................................................... 23 1 1 20.00 20 20 0 0 0
.....................................................................................................TATCACAGTGACTGTTCTTTTTT...................................................... 23 1 1 20.00 20 18 2 0 0
......................................................................................................ATAACAGTGGCTGTTCTTTTT....................................................... 21 1 3 20.00 60 60 0 0 0
.....................................................................................................TGTTACAGTGGCTGTTCTTTTTT...................................................... 23 2 1 20.00 20 20 0 0 0
......................................................................................................AGCACAGTGGCTGTTCTTTT........................................................ 20 1 3 20.00 60 60 0 0 0
.....................................................................................................TATCACTGTGGCTGTTCTTTTT....................................................... 22 1 3 19.67 59 59 0 0 0
.....................................................................................................TATTACAGTGGCTTTTCTTTTT....................................................... 22 2 3 19.33 58 58 0 0 0
.....................................................................................................TATCACAGTGGGTGTTCTTTT........................................................ 21 1 3 19.33 58 56 2 0 0
.....................................................................................................TGTCACACTGGCTGTTCTTTTT....................................................... 22 2 3 19.33 58 58 0 0 0
....................................................................................................CGATCACAGTGGCTGTTCTTTT........................................................ 22 2 3 19.33 58 58 0 0 0
.....................................................................................................TGTCTCAGTGGCTGTTCTTTT........................................................ 21 2 3 19.33 58 58 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTTTTC..................................................... 24 2 1 19.00 19 19 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTTTTCC..................................................... 24 3 3 19.00 57 57 0 0 0
.....................................................................................................TGTCACAGTGGCTTTTCTTTT........................................................ 21 2 4 18.75 75 75 0 0 0
.................................................................................................GATCTATCACAGTGGCTGTTCTTTTT....................................................... 26 3 3 18.67 56 56 0 0 0
.....................................................................................................TATCACAGTCGCTGTTCTTTTTC...................................................... 23 2 3 18.67 56 56 0 0 0
.....................................................................................................AATCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 18.67 56 56 0 0 0
.....................................................................................................TAACACAGTGGCTGTTCTTTT........................................................ 21 1 3 18.33 55 55 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCGTTT........................................................ 21 1 3 18.33 55 55 0 0 0
.....................................................................................................TATCACAGTGGCTGTCCTTTTTT...................................................... 23 1 1 18.00 18 18 0 0 0
.....................................................................................................TATCACAGTAGCTGTTCTTTTTT...................................................... 23 1 1 18.00 18 17 1 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTTCT...................................................... 23 1 1 18.00 18 18 0 0 0
.....................................................................................................TATCACGGTGGCTGTTCTTTTTT...................................................... 23 1 1 18.00 18 18 0 0 0
.....................................................................................................TGTCACAGTGGCTGCTCTTTTT....................................................... 22 2 3 17.67 53 53 0 0 0
....................................................................................................CTATCACAGTGGCTGTTCTTTTTC...................................................... 24 2 3 17.67 53 53 0 0 0
......................................................................................................ATCTCAGTGGCTGTTCTTTTT....................................................... 21 1 3 17.33 52 52 0 0 0
.....................................................................................................TATCACACTGGCTGTTCTTTTTC...................................................... 23 2 3 17.33 52 52 0 0 0
.....................................................................................................CATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 17.33 52 52 0 0 0
.....................................................................................................TATCACAGTGGCTTTTCTTT......................................................... 20 1 3 17.00 51 51 0 0 0
.....................................................................................................TATCACATTGGCTGTTCTTTTTC...................................................... 23 2 3 17.00 51 51 0 0 0
.....................................................................................................GATCACAGTGGCTGTTCTTT......................................................... 20 1 3 17.00 51 51 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTGTT........................................................ 21 1 3 16.33 49 49 0 0 0
.....................................................................................................TACTACAGTGGCTGTTCTTTT........................................................ 21 2 3 16.33 49 49 0 0 0
......................................................................................................ATCACAGTGGCTGTTCTTTTTC...................................................... 22 1 3 16.00 48 48 0 0 0
.....................................................................................................TATCTCAGTGGCTGTTCTTT......................................................... 20 1 3 15.67 47 47 0 0 0
.....................................................................................................TACCACAGCGGCTGTTCTTTT........................................................ 21 2 3 15.67 47 47 0 0 0
.....................................................................................................GATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 15.67 47 47 0 0 0
.....................................................................................................TATCACAACGGCTGTTCTTTTT....................................................... 22 2 3 15.33 46 46 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCATTTT....................................................... 22 1 3 15.33 46 46 0 0 0
.....................................................................................................TATTACAGTGGCTGTTCTTTTTCC..................................................... 24 3 4 15.25 61 61 0 0 0
.........................................................AGAGAACGTTCGCTGTTGATGTT.................................................................................................. 23 1 1 15.00 15 7 8 0 0
.....................................................................................................TATCACAGTGGCTGTACTTTT........................................................ 21 1 3 15.00 45 45 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTC.......................................................... 19 1 3 14.67 44 44 0 0 0
.....................................................................................................TATCACAGTGGCTCTTCTTTT........................................................ 21 1 3 14.67 44 43 1 0 0
......................................................................................................ATCTCAGTGGCTGTTCTTTTTT...................................................... 22 1 1 14.00 14 14 0 0 0
.....................................................................................................TACCACAGTGGCTGTTCTTC......................................................... 20 2 3 14.00 42 42 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTT.......................................................... 19 1 3 14.00 42 42 0 0 0
.....................................................................................................TATCACAGTGGCTGATCTTTTTT...................................................... 23 1 1 14.00 14 14 0 0 0
.....................................................................................................TATCACAGTGGCAGTTCTTTT........................................................ 21 1 3 14.00 42 42 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTTGTT...................................................... 23 1 1 14.00 14 14 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTAT........................................................ 21 1 3 13.67 41 41 0 0 0
.....................................................................................................TACCACAGTGGCTTTTCTTTTT....................................................... 22 2 3 13.67 41 41 0 0 0
.................................................................................................GATCTATCACAGTGGCTGTTCTTTT........................................................ 25 3 3 13.33 40 40 0 0 0
.....................................................................................................TCTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 13.33 40 40 0 0 0
.....................................................................................................TATCACCGTGGCTGTTCTTTTT....................................................... 22 1 3 13.33 40 40 0 0 0
....................................................................................................CTATCACAGTGGCTGTTCTTTTC....................................................... 23 2 3 13.00 39 39 0 0 0
.......................................................................................................TCACAGTGGCTGTTCTTTTTTG..................................................... 22 0 1 13.00 13 13 0 0 0
.....................................................................................................TTTCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 13.00 39 39 0 0 0
.....................................................................................................TATCATAGTGGCTGTTCTTTTTT...................................................... 23 1 1 13.00 13 13 0 0 0
.........................................................AGATAACGTTCGCTGTTGATGTA.................................................................................................. 23 1 1 13.00 13 13 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTATTT....................................................... 22 1 3 13.00 39 39 0 0 0
.....................................................................................................TATCACAGTGGCTGTGCTTTTTT...................................................... 23 1 1 13.00 13 13 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCTTTTTA...................................................... 23 2 3 12.67 38 38 0 0 0
.....................................................................................................TAGCACAGTGGCTGTTCTTTT........................................................ 21 1 3 12.67 38 38 0 0 0
.....................................................................................................TGTTACAGTGGCTGTTCTTTTTC...................................................... 23 3 4 12.50 50 50 0 0 0
.....................................................................................................TATCACAGTTGCTGTTCTTTTC....................................................... 22 2 3 12.33 37 37 0 0 0
.....................................................................................................TATTACAGTGGCTGTTCTTC......................................................... 20 2 4 12.25 49 49 0 0 0
.....................................................................................................TATCACAGTGGCTTTCTTTTTT....................................................... 22 3 6 12.17 73 73 0 0 0
.........................................................AGATAACGTTCGCTGTTGATGT................................................................................................... 22 1 1 12.00 12 12 0 0 0
.....................................................................................................TATCACAGTGGCTGTTTTTT......................................................... 20 1 3 12.00 36 36 0 0 0
.....................................................................................................TGTCACAGTGGCTGTTCCTTTT....................................................... 22 2 3 12.00 36 36 0 0 0
.....................................................................................................TATCGCAGTGGCTGTTCTTTTTT...................................................... 23 1 1 12.00 12 12 0 0 0
.....................................................................................................TATGACAGTGGCTGTTCTTTTT....................................................... 22 1 3 12.00 36 36 0 0 0
........................................................................................................CACAGTGGCTGTTCTTTTTT...................................................... 20 0 1 12.00 12 12 0 0 0
.........................................................AGCGAACGTTCGCTGTTGATGTA.................................................................................................. 23 1 1 12.00 12 12 0 0 0
.....................................................................................................TATCAGAGTGGCTGTTCTTTTTT...................................................... 23 1 1 12.00 12 12 0 0 0
.....................................................................................................TATTACAGTCGCTGTTCTTTTT....................................................... 22 2 3 11.67 35 35 0 0 0
.....................................................................................................TATCACAGGGGCTGTTCTTTTTC...................................................... 23 2 3 11.67 35 35 0 0 0
.....................................................................................................TGCCACAGTGGCTGTTCTTTT........................................................ 21 2 5 11.60 58 58 0 0 0
...................................................................................................TCTATCACAGTGGCTGTTCTTTT........................................................ 23 1 3 11.33 34 34 0 0 0
.....................................................................................................TATCACAGTGGCTGCTCTTTTC....................................................... 22 2 3 11.33 34 34 0 0 0
.....................................................................................................TATCACAGTGGATGTTCTTTTTC...................................................... 23 2 3 11.33 34 34 0 0 0
.....................................................................................................TATCACAGTGGCAGTTCTTTTTT...................................................... 23 1 1 11.00 11 11 0 0 0
.....................................................................................................TATCACAGTGGCTGTCCTTTTTC...................................................... 23 2 3 11.00 33 33 0 0 0
.......................................................................................................TCACAGTGGCTGTTCTTTTTTGT.................................................... 23 0 1 11.00 11 11 0 0 0
.....................................................................................................TATCACAGTGGCTGTTCTTGTTT...................................................... 23 1 1 11.00 11 11 0 0 0
.....................................................................................................TATCACAGTGGCTGCTCTTTTTC...................................................... 23 2 3 11.00 33 33 0 0 0
......................................................................................................ATCACAGTGGCTGTTCTTT......................................................... 19 0 3 11.00 33 33 0 0 0
.....................................................................................................TATCACAGTAGCTGTTCTTTTTC...................................................... 23 2 3 10.67 32 32 0 0 0
.....................................................................................................TGTCACAGTGGCTGCTCTTTT........................................................ 21 2 3 10.67 32 32 0 0 0
.....................................................................................................AATCACAGTGGCTGTTCTTT......................................................... 20 1 3 10.33 31 31 0 0 0
.....................................................................................................TATTTCAGTGGCTGTTCTTTTT....................................................... 22 2 3 10.33 31 31 0 0 0
......................................................................................................TTCACAGTGGCTGTTCTTTTT....................................................... 21 1 3 10.33 31 31 0 0 0

Anti-sense strand reads

TAGAATTCATACACTAAACAAGTCAAAGTTTAGCACCGGCATTTAACGAATTTCTCTTCTCTTGCAAGCGACAACTACATCAGCTTAAGTAAATTAGAAATATAGTGTCACCGACAAGAAAAAACAAATTGTTAAAAAGTTGCAACTCTTACTTCTTAAAGGTTTCTAGGTTAGCTCT

****************************************(((((.(((((.(((((((((((.(((((((.(((((((..((..........)).)))))))))))))).))))))))))).))))))))))...****************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body
......................................................................................................................................ATAAGTTGCAACGCCTACTT........................ 20 3 6 0.17 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20935909-20936086 - dmo-mir-6-3 Known_mirbase ATCTTAAGTATGTGATTTGTTCAGTTTCAAAT-----------CGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATTTAATCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAGAATGAAGAATTTCCAAAGATCCAATCGAGA
droVir3 scaffold_12875:4112910-4113062 + dvi-mir-6-3 Known_mirbase AACTAACTTGTGCAATTTGTTCACTTT--AAT-----------GACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTGTACTCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTTA--A---------TTCTTAAAAA-----------
droGri2 scaffold_15112:2107904-2108043 - dgr-mir-6-3 Known_mirbase ATTTTACGTGTGTT--TTTTTTTGTT---AAC-----------TCCACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCAAATATTT------TATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTTT---------------------------------
droWil2 scf2_1100000004514:1650972-1651096 - dwi-mir-6-3 Known_mirbase TTCTTT-------------------------------------------CATTTTTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTG----TTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAACAATATA------AAATTTC-----------------
dp5 3:12676790-12676907 - dps-mir-6-3 Known_mirbase GCATTC-G-----------------------------------CCAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCG-----------------------------------
droPer2 scaffold_2:8906751-8906882 + dpe-mir-6-2 Known_mirbase ATCTCC-GCCG---------------------CCGCGCATTCACCAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACG-----------------------------------
droAna3 scaffold_13266:9732093-9732213 + dan-mir-6-3 Known_mirbase ACGTTG-GTGG---------------------AC---------AGAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCGCATCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT---------------------------------
droBip1 scf7180000396427:875041-875166 + ACCTTG-GTGG---------------------A----------CAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCGCCTCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGG------AT---------------------
droKik1 scf7180000302679:88647-88786 - GCCTCA-GTGTATCATCTCT---GTTG----------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCACACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------
droFic1 scf7180000454039:847342-847467 - TCCTCA-ATGT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAG------------------------------
droEle1 scf7180000491201:2013279-2013405 - ACCTCA-ATTT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGA-----------------------------
droRho1 scf7180000780066:74344-74469 + ACCTCA-ATTT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAG------------------------------
droBia1 scf7180000302143:3059121-3059246 - ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCTCACAGTT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAG------------------------------
droTak1 scf7180000415384:84724-84866 + AACTGA-ATGTGAAAACT-------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGC-----TGATTTTCCA---------------
droEug1 scf7180000409474:2397522-2397644 + ACCTCA-ATGT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT---------------------------------
dm3 chr2R:15548202-15548327 - dme-mir-6-3 Known_mirbase ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------
droSim2 2r:16195474-16195599 - dsi-mir-6-3 Known_mirbase ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------
droSec2 scaffold_1:13062935-13063060 - dse-mir-6-3 Known_mirbase ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------
droYak3 2R:13624462-13624587 + dya-mir-6-3 Known_mirbase ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCTCAATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAG------------------------------
droEre2 scaffold_4845:9748456-9748581 - der-mir-6-3 Known_mirbase ACCTTG-GTGC--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAG------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATCTTAAGTATGTGATTTGTTCAGTTTCAAAT-----------CGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATTTAATCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAGAATGAAGAATTTCCAAAGATCCAATCGAGASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................223175659.67526979301005269462
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................21371420.67214262141002142425
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................23120128.00201280000201271
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................2339565.33286966000286900
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................2035461.67163853000163802
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................2234979.00149371000149360
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................2131153.673461000034610
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.....................................................243749.332248000022480
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................203612.001836000018360
....................................................................AGAGAACGTTCGCTGTTGATGT..........................................................................................................221586.005860204003820
....................................................................AGAGAACGTTCGCTGTTGATGTA.........................................................................................................231565.005651146004180
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................221463.0046300004630
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................241402.0040200004020
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................213393.671181200011790
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................193276.6783001008281
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................233230.3369100006910
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................242181.5036320003610
....................................................................AGAGAACGTTCGCTGTTGATG...........................................................................................................211171.00171064001070
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................203132.3339710003960
....................................................................AGAGAACGTTCGCTGTTGATGC..........................................................................................................221129.0012900001290
...................................................................AAGAGAACGTTCGCTGTTGATGT..........................................................................................................231116.0011604500710
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................22389.6726900002690
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................20389.6726900002690
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC....................................................25170.00700000700
.......................................................................................................................TATCACAGTGGCTGTTCTTTTCC......................................................23368.6720600002060
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................19365.3319600001960
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC....................................................25353.6716100001610
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................18347.6714300001430
...................................................................AAGAGAACGTTCGCTGTTGATG...........................................................................................................22147.004701900280
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................21346.6714000001400
.........................................................................................................................TCACAGTGGCTGTTCTTTT........................................................19331.33940000940
......................................................................................................................ATATCACAGTGGCTGTTCTTT.........................................................21331.33940000940
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................22328.67860000860
..........................................................................................................................CACAGTGGCTGTTCTTTT........................................................18328.33850000850
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................18326.33790000790
....................................................................AGAGAACGTTCGCTGTTGATGTAA........................................................................................................24124.00240600180
...................................................................AAGAGAACGTTCGCTGTTGATGC..........................................................................................................23122.00220000220
........................................................................................................................ATCACAGTGGCTGTTCTTTTTC......................................................22316.00480000480
....................................................................AGAGAACGTTCGCTGTTGATGTT.........................................................................................................23115.0015080070
.......................................................................................................................TATCACAGTGGCTGTTCTC..........................................................19314.67440000440
.........................................................................................................................TCACAGTGGCTGTTCTTTTTTG.....................................................22113.00130000130
..........................................................................................................................CACAGTGGCTGTTCTTTTTT......................................................20112.00120000120
.........................................................................................................................TCACAGTGGCTGTTCTTTTTTGT....................................................23111.00110000110
........................................................................................................................ATCACAGTGGCTGTTCTTT.........................................................19311.00330000330
droVir3
AACTAACTTGTGCAATTTGTTCACTTT--AAT-----------GACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTGTACTCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAACTTA--A---------TTCTTAAAAA-----------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
....................................................................AGAGAACGTTCGCTGTTGATGTA.........................................................................................................23114177.0014177001161000000001212500000000000000010085130602073140069101934372554485419368238212483151470000027027024290220301677245259282338
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................2314063.00406300014990000000000000000000000000000000000000268161105918516791160102701046300025020000042413180000202151591868180
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
....................................................................AGAGAACGTTCGCTGTTGATG...........................................................................................................2111078.0010780002800000000020000000000000000002010610000794555949451014779523433280001433601000611551000002722221615
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.....................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
....................................................................AGAGAACGTTCGCTGTTGATGT..........................................................................................................221402.004020002400000000212000000000000000000205318180000113219311111212010007400000098570000005119141117
....................................................................AGAGAACGTTCGCTGTTGATGTAA........................................................................................................241238.0023800050000000001000000000000000000002034000081612333132502000000000007552000000494181416
...................................................................AAGAGAACGTTCGCTGTTGATGTA.........................................................................................................241197.00197000200000000010000000000000000001001420000174943310211000100021000003528000000201260
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................241130.0013000041000000000000000000000000000000000000000213425611104620002400000012200000001120
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC....................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................24268.50137000370000000000000000000000000000000000000004432574946410003000000221600000065625
....................................................................AGAGAACGTTCGCTGTTGATGTAAA-......................................................................................................25166.006600010000000000000000000000000000000001000011253202111000000010000012900000062528
....................................................................AGAGAACGTTCGCTGTTGAT............................................................................................................20164.006400000000000000000000000000000000000011000000300051523410001310000020700000024252
....................................................................AGAGAACGTTCGCTGTTGATGTC.........................................................................................................23158.0058000000000000000000000000000000000000010000318272100110100000120000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
...........................................................................................GT-C-GACCTTTGTACTCTT------TA.............................................................................20145.004500040000000010000000000000000000601431600001110000000000000010000000500000000001
...................................................................AAGAGAACGTTCGCTGTTGATG...........................................................................................................22142.00420002000000000000000000000000000000100000000750154131320000300000002100000001000
....................................................................AGAGAACGTTCGCTGTTGA.............................................................................................................19240.5081000000000000010000000000000000000000000000221195342060111000400000001500000041000
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC....................................................25132.00320008000000000000000000000000000000000000000001410210212000900000000100000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
.......................................................................................................................TATCACAGTGGCTGTTCTTTTCC......................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
...................................................................AAGAGAACGTTCGCTGTTGATGT..........................................................................................................23127.00270002000000000000000000000000000000001200000320001010100000220000011500000000111
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
....................................................................AGAGAACGTTCGCTGTTGATGTAAA-A-....................................................................................................26114.00140000000000000000000000000000000000000000001210000000001000000000001100000023110
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
....................................................................AGAGAACGTTCGCTGTTGATGC..........................................................................................................22111.00110007000000001000000000000000000000000000000000000000000000010000010100000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTA.....................................................2419.0090000000000000000000000000000000000000000000001000121100000000000011100000000000
....................................................................AGAGAACGTTCGCTGTTGATGTAG........................................................................................................2419.0090000000000000100000000000000000000000000000100020100000000000000000210000000010
...................................................................AAGAGAACGTTCGCTGTTGAT............................................................................................................2119.0090000000000000000000000000000000000000000000000110100002000200000000000000000101
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCA.....................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
....................................................................AGAGAACGTTCGCTGTTGATGTT.........................................................................................................2318.0080000000000000000000000000000000000000000000110000020000000030000000100000000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................2218.0080003000000000000000000000000000000000000000010001000000000100000010100000000000
......................................................................................................................ATATCACAGTGGCTGTTCTTTTT.......................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
....................................................................AGAGAACGTTCGCTGTTGATGTG.........................................................................................................2317.0070000000000000000000000000000000000000000001320000000000000010000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTCCC.....................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTG.....................................................2416.0060001000000000000000000000000000000000000000000002020000000000000000000000001000
.......................................................................................................................TATCACAGTGGCTGTTC............................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAA......................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
.....................................................................................................................TATATCACAGTGGCTGTTCTTT.........................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
....................................................................AGAGAACGTTCGCTGTTGATGTAT........................................................................................................2415.0050000000000000000000000000000000010000000000200000000000000100000000000000010000
...................................................................AAGAGAACGTTCGCTGTTGATGTAA........................................................................................................2515.0050000000000000000000000000000000000000000000100000000000000000000000200000001001
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTCCC...................................................2624.5090002000000000000000000000000000000000000000100000002000000400000000000000000000
....................................................................AGAGAACGTTCGCTGTTGATC...........................................................................................................2124.5090001000000000000000000000000000000000000000110010100100000210000000000000000000
..................................................................GAAGAGAACGTTCGCTGTTGATG...........................................................................................................2314.0040000000000000000000000000000000000000000000100000100010000000000000000000000010
.......................................................................GAACGTTCGCTGTTGATGTA.........................................................................................................2014.0040000000000000000000000000000000000001000000200000000000000000000000000000010000
.........................................................................ACGTTCGCTGTTGATGTA.........................................................................................................1814.0040000000000000000000000000000000000000000000210000000000000000000000100000000000
....................................................................AGAGAACGTTCGCTGTTGATGA..........................................................................................................2214.0040000000000000000000000000000000000000000000120000000000000010000000000000000000
......................................................................AGAACGTTCGCTGTTGATGTA.........................................................................................................2114.0040001000000000100000000000000000000001000000000000000000000000000000100000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAAA.....................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAC.....................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
...............................................CTCGTCAATTGTTTAAAAGGA................................................................................................................................2113.0030000000000000000000000000000000000000000000100000000000000000000000100000001000
droGri2
ATTTTACGTGTGTT--TTTTTTTGTT---AAC-----------TCCACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCAAATATTT------TATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTTT---------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................2262.5015105
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2161.831129
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................2060.33202
droWil2
TTCTTT-------------------------------------------CATTTTTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTG----TTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAACAATATA------AAATTTC-----------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22335155.671054670180701036555
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2138217.002465103441243042
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................2311572.001572026015451
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................2031168.673506059534411
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................2331099.333298010032880
....................................................................AGGGAACGGTTGCTGTTGATGTA.........................................................................................................231841.008410008410
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................193320.009600609504
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................243217.006510506460
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................223189.675690405650
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................183128.333850303820
....................................................................AGGGAACGGTTGCTGTTGATGT..........................................................................................................22185.0085000850
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21370.3321101430680
....................................................................AGGGAACGGTTGCTGTTGATG...........................................................................................................21154.0054000540
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA....................................................25346.001380001380
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................18345.001350101340
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAA......................................................23341.671250001250
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................22340.331210101200
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................23332.3397000970
....................................................................AGGGAACGGTTGCTGTTGATGTAA........................................................................................................24131.0031000310
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTA.....................................................24130.0030000300
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................22318.6756000560
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................20316.00480310170
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................24210.5021010200
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................20310.33310120190
..........................................................................................................................CACAGTGGCTGTTCTTTTTTGT....................................................22110.0010000100
.......................................................................................................................TATCACAGTGGCTGTTCTTTA........................................................2139.3328010270
......................................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................2238.6726000260
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA....................................................2518.00800080
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAAA.....................................................2437.3322000220
....................................................................AGGGAACGGTTGCTGTTGA.............................................................................................................1917.00700070
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................2217.00703040
....................................................................AGGGAACGGTTGCTGTTGATGTAAA.......................................................................................................2516.00600060
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................1936.0018000180
.................................................................AGAAGGGAACGGTTGCTGTTGA.............................................................................................................2215.00500050
......................................................................................................................ATATCACAGTGGCTGTTCTTT.........................................................2134.6714000140
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................2134.3313000130
...................................................................AAGGGAACGGTTGCTGTTGATG...........................................................................................................2214.00400040
....................................................................AGGGAACGGTTGCTGTTGAT............................................................................................................2014.00400040
...........................................................................................................................ACAGTGGCTGTTCTTTTTT......................................................1914.00400040
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.....................................................2433.6711000110
.......................................................................................................................TATCACAGTGGCTGTTCTTTAA.......................................................2243.2513000130
...................................................................AAGGGAACGGTTGCTGTTGATGTA.........................................................................................................2413.00300030
.........................................................................................................................TCACAGTGGCTGTTCTTTTTT......................................................2113.00301020
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTG.....................................................2413.00301020
........................................................................................................................ATCACAGTGGCTGTTCTTT.........................................................1932.67807010
...........................................................................................................................ACAGTGGCTGTTCTTTTTA......................................................1932.67800080
.................................................................AGAAGGGAACGGTTGCTGTTGAT............................................................................................................2312.00200020
.........................................................................................................................TCACAGTGGCTGTTCTTTT........................................................1932.00600060
.................................................CATTTTTTGTTTAAAAAGA................................................................................................................................1912.00200020
...........................................................................................GTAT-ACCATTTTG----TTTAACAATA.............................................................................2312.00200020
.....................................................................GGGAACGGTTGCTGTTGATGTA.........................................................................................................2212.00200020
....................................................................AGGGAACGGTTGCTGTTGATGTG.........................................................................................................2312.00200020
..........................................................................................................................CACAGTGGCTGTTCTTTT........................................................1831.67500050
......................................................................................................................ATATCACAGTGGCTGTTCTTTTT.......................................................2331.33402020
......................................................................................................................ATATCACAGTGGCTGTTCTT..........................................................2031.33400040
.........................................................................................................................TCACAGTGGCTGTTCTTTTTAA.....................................................2231.33400040
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTAC....................................................2511.00100010
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT....................................................2511.00100010
....................................................................AGGGAACGGTTGCTGTTGATGTAT........................................................................................................2411.00100010
..........................................................................................................................CACAGTGGCTGTTCTTTTTTG.....................................................2111.00100010
....................................................................AGGGAACGGTTGCTGTTGATGTAG........................................................................................................2411.00100010
................................................................................................................AACAATATATCACAGTGGCTGTTCTTTT........................................................2811.00100010
.....T-------------------------------------------CATTTTTTGTTTAAAAAGA................................................................................................................................2011.00100010
..........................................................................................................................CACAGTGGCTGTTCTTTTTTAA....................................................2211.00100010
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................2411.00100010
....................................................................AGGGAACGGTTGCTGTTGATGTT.........................................................................................................2311.00100010
....................................................................AGGGAACGGTTGCTGTTGATGTGT........................................................................................................2411.00100010
....................................................................AGGGAACGGTTGCTGTTGATGC..........................................................................................................2211.00100010
.........................................................................ACGGTTGCTGTTGATGTA.........................................................................................................1811.00100010
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC....................................................2531.00300030
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................2131.00300030
dp5
GCATTC-G-----------------------------------CCAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCG-----------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22338201.331146040681510770178307000
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2136091.0018273012371700029205000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................2314325.00432505542662002000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................2231760.0052800452724000000
....................................................................AGGGAACGGTTGCTGCTGATGTA.........................................................................................................231431.00431015280013500001
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................203403.001209013410741000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................213194.005820505770000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................213169.33508025060000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................233159.004770124641000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................233100.003000222770001000
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................20362.00186001842000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................24257.50115021121000000
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................20340.001200106140000000
......................................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................22330.339107840000000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................19327.6783024590000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................22324.677406680000000
....................................................................AGGGAACGGTTGCTGCTGATGT..........................................................................................................22119.001901120600000
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................20317.0051032190000000
......................................................................................................................ATATCACAGTGGCTGTTCTTTTT.......................................................23313.674108330000000
....................................................................AGGGAACGGTTGCTGCTGATG...........................................................................................................21112.00120060600000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................22112.00120570000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.....................................................24310.673206260000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................22310.333109220000000
........................................................................................................................ATCACAGTGGCTGTTCTTT.........................................................1938.332502230000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................2138.002401230000000
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................1937.6723010130000000
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................1837.002108130000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................2417.0070070000000
..........................................................................................................................CACAGTGGCTGTTCTTTTTTGT....................................................2216.0060060000000
......................................................................................................................ATATCACAGTGGCTGTTCTTT.........................................................2135.331600160000000
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................1835.001503120000000
....................................................................AGGGAACGGTTGCTGCTGATGTAA........................................................................................................2414.0040010300000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................2434.001202100000000
....................................................................AGGGAACGGTTGCTGCTGATGTT.........................................................................................................2314.0040020200000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTCC......................................................2333.0090180000000
....................................................................AGGGAACGGTTGCTGCTGATGTC.........................................................................................................2313.0030020100000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTGTA...................................................2612.0020020000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAA......................................................2332.0060230001000
....................................................................AGGGAACGGTTGCTGCTGATGC..........................................................................................................2212.0020020000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTC.......................................................2132.0060150000000
......................................................................................................................ATATCACAGTGGCTGTTCTTTTTT......................................................2412.0020020000000
.........................................................................................................................TCACAGTGGCTGTTCTTTTTTGT....................................................2312.0020020000000
........................................................................................................................ATCACAGTGGCTGTTCTT..........................................................1831.6750500000000
.......................................................................................................................TATCACAGTGGCTGTTCTC..........................................................1931.6750050000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTTC....................................................2521.5030030000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTCC.......................................................2231.3340040000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTC......................................................2231.3340310000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC....................................................2531.3340040000000
droPer2
ATCTCC-GCCG---------------------CCGCGCATTCACCAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACG-----------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................223146.00438941300115
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................21325.00758620005
....................................................................AGGGAACGGTTGCTGCTGATGTA.........................................................................................................23115.00154011000
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21314.67440440000
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................2035.0015680001
....................................................................AGGGAACGGTTGCTGCTGATG...........................................................................................................2114.004102010
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................2314.004220000
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................2033.009090000
....................................................................AGGGAACGGTTGCTGCTGATGTAA........................................................................................................2412.002002000
....................................................................AGGGAACGGTTGCTGCTGATGT..........................................................................................................2211.001001000
....................................................................AGGGAACGGTTGCTGCTGATGTAGT.......................................................................................................2511.001001000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................1931.003030000
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................2030.672020000
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................2030.331100000
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................1930.331010000
......................................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................2230.331010000
.........................................................................................................................TCACAGTGGCTGTTCTTTT........................................................1930.331010000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................2230.331010000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................2330.331010000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................2230.331010000
droAna3
ACGTTG-GTGG---------------------AC---------AGAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCGCATCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT---------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22315043.3345130367447520074
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2133049.3391489790392028
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................2312039.002039920300000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................223462.001386013860000
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................203276.00828267920082
....................................................................AGGGAACGGTCGCTGCTGATGTA.........................................................................................................23165.006514320001
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................21357.6717301720001
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................20337.0011101110000
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21335.6710740670000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................23334.6710401040000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................23333.671013980000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................24132.00320320000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................19317.33528390023
....................................................................AGGGAACGGTCGCTGCTGATGT..........................................................................................................22110.0010091000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................2219.009450000
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................1938.67260260000
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................2038.00245190000
....................................................................AGGGAACGGTCGCTGCTGATGC..........................................................................................................2217.007070000
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................1836.00180180000
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................1836.00180180000
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................2036.00187110000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................2235.33160150001
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................2134.33130130000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................2233.3310190000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................2433.009170010
........................................................................................................................ATCACAGTGGCTGTTCTTT.........................................................1932.006330000
.........................................................................................................................TCACAGTGGCTGTTCTTTT........................................................1931.675050000
......................................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................2231.675050000
....................................................................AGGGAACGGTCGCTGCTGATGTAA........................................................................................................2411.001010000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................2421.002020000
....................................................................AGGGAACGGTCGCTGCTGAT............................................................................................................2011.001010000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTG.....................................................2411.001010000
.......................................................................................................................TATCACAGTGGCTGTTCTC..........................................................1931.003030000
..........................................................................................................................CACAGTGGCTGTTCTTTTTTT.....................................................2111.001010000
...........................................................................................................................ACAGTGGCTGTTCTTTTTT......................................................1911.001010000
........................................................................................................................ATCACAGTGGCTGTTCTTTTC.......................................................2131.003030000
..........................................................................................................................CACAGTGGCTGTTCTTTTTT......................................................2011.001010000
droBip1
ACCTTG-GTGG---------------------A----------CAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCGCCTCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGG------AT---------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCCTCA-GTGTATCATCTCT---GTTG----------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCACACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCCTCA-ATGT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAG------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACCTCA-ATTT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGA-----------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACCTCA-ATTT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAG------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCTCACAGTT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAG------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACTGA-ATGTGAAAACT-------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGC-----TGATTTTCCA---------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACCTCA-ATGT--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT---------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................AGGGAACGGTTGCTGATGATGTA.........................................................................................................23138897.00388970000303324285800100000000000000000000034501000000000000000000000000000000000000000000007583125013510238892101100040020582660971910041171150047519810900010002000000000000000002811721412901213020000051000000000000120100000000000000000000400000000000000000000120200000000000100000006832010000000010000340113020000000000000100001100012016730901140001001000002032821126632202101190510100
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................2316947.00694700005072175351212800000000000000000000000000000000000000000000000100000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021647202570854621801290000000000000000000000000000000000000001010100000000001247961920100002000000000000000010001010100000100
....................................................................AGGGAACGGTTGCTGATGATGT..........................................................................................................2216352.006352000000233921000000000000000000000000362000000000000000000000000000000000000000000000062261479338000010000000000140000458910040127400100000000000000000000036749517271720000200000000000000000001000000000000000000000000000000000010000000000000000000000000000014600000010000000000000000000000000000000000000000002883800800001000000000005000010000000040000000
....................................................................AGGGAACGGTTGCTGATGATG...........................................................................................................2114948.004948000000231000000000000000000000000039670000000000000000000000000000000000000000000000871012124500000000000100020000204000800800000000000000000000000031207162293000000000000000000000000000000000000000000000000000100000000000000000000000000000000000003300000000000000000000000000000000000000000001001003101000200000000000000001000000000000010000010
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
....................................................................AGGGAACGGTTGCTGATGAT............................................................................................................2013286.003286000000020000000000000000000000000029730000000000000000000000000000000000000000000000320041500000000000000000000060005000000000000000000000000000021186000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000201100100000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................242585.501171000001011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000076132109070500300000000000000000000000000000000000000000000000000000007627500000000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
....................................................................AGGGAACGGTTGCTGATGA.............................................................................................................191212.002120000000000000000000000000000000000102000000000000000000000000000000000000000000000010100130000000000000000000001000300200000000000000000000000001612000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000049200000000000000000000000000000000000000000
...................................................................AAGGGAACGGTTGCTGATGATGTA.........................................................................................................241193.001930000003100000000000000000000000000000000000000000000000000000000000000000000000001811260000000000000000000016000200100000000000000000000000011117000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000129000000000000000000000000000000000000000000
.....................................................................GGGAACGGTTGCTGATGATGTA.........................................................................................................221167.001670000001400000000000000000000000000100000000000000000000000000000000000000000000005840029000000000000000603007220002008000000000000000000000000054000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
....................................................................AGGGAACGGTTGCTGATGATGTAA........................................................................................................241134.0013400000023000000000000000000000000002000000000000000000000000000000000000000000000028510270000000000000000000014800020012000000000000000000000000256000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
....................................................................AGGGAACGGTTGCTGATGATGTC.........................................................................................................231127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000003102500000000000000020000040000003000000000000000000000000047420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
....................................................................AGGGAACGGTTGCTGATGATGTAG........................................................................................................24196.009600000001000000000000000000000000001000000000000000000000000000000000000000000000019903300000000000000050000300000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000000000000000000000000000000000000000000
....................................................................AGGGAACGGTTGCTGATGATGTT.........................................................................................................23186.0086000000330000000000000000000000000000000000000000000000000000000000000000000000000250150000000000000002000028000100200000000000000000000000001120020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000016000000000000000000010000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
....................................................................AGGGAACGGTTGCTGATGATGTG.........................................................................................................23171.007100000061000000000000000000000000000000000000000000000000000000000000000000000000010301300000000000000010000250000017000000000000000000000000023300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
...................................................................AAGGGAACGGTTGCTGATGATGT..........................................................................................................23164.006400000000000000000000000000000000000000000000000000000000000000000000000000000000040003000000000000000000000000000000000000000000000000000000601900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
....................................................................AGGGAACGGTTGCTGATGATGTAT........................................................................................................24151.005100000013000000000000000000000000002000000000000000000000000000000000000000000000011100300000000000000000000000001003000000000000000000000000143600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000010000000
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTG.....................................................24144.004400000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261100000000000000000000000000000000000000000
....................................................................AGGGAACGGTTGCTGATG..............................................................................................................18144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000010000002000000000000000000000000785000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTA.....................................................24133.00330000001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000
...................................................................AAGGGAACGGTTGCTGATGATG...........................................................................................................22130.00300000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
.....................................................................GGGAACGGTTGCTGATGATGT..........................................................................................................21127.0027000000000000000000000000000000000010000000000000000000000000000000000000000000000800030000000000000000000000000300500000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
....................................................................AGGGAACGGTTGCTGATGATGTAAA.......................................................................................................25125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000003100000100000000000000000000000002202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
....................................................................AGGGAACGGTTGCTGATGATGC..........................................................................................................22122.0022000000100000000000000000000000000000000000000000000000000000000000000000000000000300010000000000001000000001000000000000000000000000000000000511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................24121.00210000001022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000000000000
...........................................................................................GTTT-GAAACTCTCACAATT------TA.............................................................................21121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000700060000000000000000000004000100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................22121.0021000000040100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000009400000000000000000000000000000000000000000
droSim2
ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................223816.00244800797972722282537553601315000
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................213162.6748810811199451247312154104000
....................................................................AGGGAACGGTTGCTGATGATGTA.........................................................................................................231137.00137001710092131307624000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................23196.0096007680244100001000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................19361.3318400212713562641000000
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................20350.671520033123571614952001000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................23350.671520001009061000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................24343.331300000007852000000000
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................18339.001170000610514001000000
....................................................................AGGGAACGGTTGCTGATGATG...........................................................................................................21125.0025003000005301301000
....................................................................AGGGAACGGTTGCTGATGATGT..........................................................................................................22122.0022001100115101200000
..............................................................................................................................GTGGCTGTTCTTTTT.......................................................15318.67560000000027281000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21318.3355000550000000000000
.......................................................................................................................TATCACAGTGGCTGT..............................................................15315.00450000000012302010000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAA......................................................23313.33400000002119000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAAA.....................................................24312.67380000002117000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................2237.3322000000128101000000
....................................................................AGGGAACGGTTGCTGATGAT............................................................................................................2014.00400200000100100000
....................................................................AGGGAACGGTTGCTGATGATGTAT........................................................................................................2413.00300000000300000000
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................2032.67800053000000000000
.......................................................................................................................TATCACAGTGGCTGTT.............................................................1632.67800000010052000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................2422.50500500000000000000
...........................................................................................GTTC-GAAACTCTCACAATT------TA.............................................................................2112.00200100000010000000
....................................................................AGGGAACGGTTGCTGATGATGTAA........................................................................................................2412.00200000000000101000
ACCTCA-GTGC--------------------------------GAAAATTG.................................................................................................................................................1812.00200200000000000000
...................................................................AAGGGAACGGTTGCTGATGATGTA.........................................................................................................2412.00200000000000200000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA....................................................2521.50300000030000000000
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................2031.33400030010000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTA........................................................2131.33400000022000000000
...........................................................................................GTTC-GAAACTCTCACAATT------...............................................................................1911.00100100000000000000
.............................................................................................................................................TGTTTGGCAATCGATCTACG...................................2011.00100000000010000000
....................................................................AGGGAACGGTTGCTGATGATGTT.........................................................................................................2311.00100000000000100000
....................................................................AGGGAACGGTTGCTGATGATGTAGT.......................................................................................................2511.00100000000000100000
...................................................................AAGGGAACGGTTGCTGATGATG...........................................................................................................2211.00100000000010000000
...........................................................................................GTTC-GAAACTCTCACAATT------T..............................................................................2011.00100100000000000000
....................................................................AGGGAACGGTTGCTGATGG.............................................................................................................1911.00100100000000000000
...................................................................AAGGGAACGGTTGCTGATGAT............................................................................................................2111.00100000000010000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTA.....................................................2411.00100000001000000000
.................................................................AGAAGGGAACGGTTGCTGATGA.............................................................................................................2211.00100000000000100000
........................................................................AACGGTTGCTGATGATGTA.........................................................................................................1911.00100000000000100000
.................................................................AGAAGGGAACGGTTGCTGATG..............................................................................................................2111.00100000000000100000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTA......................................................2230.67200000002000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................2130.67200020000000000000
droSec2
ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAG------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22327140.338142117131478922772
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2138065.33241962271023821138
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................2031417.004251233419035
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................231502.00502614941
....................................................................AGGGAACGGTTGCTGATGATGTA.........................................................................................................231262.002621422424
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................193259.677793075719
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................233126.33379203689
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................183112.00336003342
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21392.0027614701281
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................18367.33202101965
....................................................................AGGGAACGGTTGCTGATGATGT..........................................................................................................22135.003500350
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................22332.339720941
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................22329.008710851
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................20319.6759100481
....................................................................AGGGAACGGTTGCTGATGATG...........................................................................................................21115.001500150
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................24314.004200411
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................20311.3334230110
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................23311.003310320
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................2237.332220200
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................2427.001400140
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................1936.331920170
.........................................................................................................................TCACAGTGGCTGTTCTTTT........................................................1935.331620140
.......................................................................................................................TATCACAGTGGCTGTTCTTTA........................................................2134.331300130
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTG.....................................................2414.0040040
...................................................................AAGGGAACGGTTGCTGATGATGTA.........................................................................................................2414.0040040
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................2214.0041030
....................................................................AGGGAACGGTTGCTGATGAT............................................................................................................2014.0040130
....................................................................AGGGAACGGTTGCTGATGATGTAA........................................................................................................2414.0040040
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................2133.671100110
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAA......................................................2333.331000100
....................................................................AGGGAACGGTTGCTGATGATGTAG........................................................................................................2413.0030030
........................................................................................................................ATCACAGTGGCTGTTCTTT.........................................................1932.3375020
..........................................................................................................................CACAGTGGCTGTTCTTTT........................................................1832.3371060
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTA.....................................................2412.0020020
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................2132.0062040
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................2411.0010010
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT....................................................2511.0010010
...................................................................AAGGGAACGGTTGCTGATGATG...........................................................................................................2211.0010010
..............................................................................................................T------TATATCACAGTGGCTGTTCT...........................................................2111.0010010
.........................................................................................................................TCACAGTGGCTGTTCTTTTTTG.....................................................2211.0010010
.......................................................................................................................TATCACAGTGGCTGTTCTTA.........................................................2031.0030030
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................2031.0030021
......................................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................2231.0030030
....................................................................AGGGAACGGTTGCTGATGATGTAT........................................................................................................2411.0010010
........................................................................................................................ATCACAGTGGCTGTTCTTTTTA......................................................2231.0030030
.......................................................................................................................TATCACAGTGGCTGTTCTTTTAAA.....................................................2430.6720020
droYak3
ACCTCA-GTGC--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCTCAATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAG------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22388528.672655860234265335500120000
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................21315870.00476100634753810080000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................23110507.0010507021050500000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................2232566.67770000770000000000
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................2031006.673020015300310010000
....................................................................AGGGAACGGTTGCTGATGATGTA.........................................................................................................231878.00878007761020000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................213276.008280082800000000
....................................................................AGGGAACGGTTGCTGATGATGT..........................................................................................................221177.0017701159170000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................233165.004950149400000000
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................203138.334150041500000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................242104.502090020900000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................21392.002760926700000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................23390.332710226900000000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................19362.001860218400000000
....................................................................AGGGAACGGTTGCTGATGATG...........................................................................................................21149.0049104080000000
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................18347.001410114000000000
....................................................................AGGGAACGGTTGCTGATGATGC..........................................................................................................22133.0033003300000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................22331.3394009400000000
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................20322.3367006700000000
.................................................................AGAAGGGAACGGTTGCTGATGAT............................................................................................................23122.0022001920100000
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................19321.0063016200000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................21316.6750005000000000
...................................................................AAGGGAACGGTTGCTGATGATGT..........................................................................................................23115.0015001320000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................24113.0013001300000000
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................20312.6738023600000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................22112.0012011100000000
..........................................................................................................................CACAGTGGCTGTTCTTTTTT......................................................2019.00900900000000
.................................................................AGAAGGGAACGGTTGCTGATGA.............................................................................................................2219.00900720000000
.................................................................AGAAGGGAACGGTTGCTGATG..............................................................................................................2119.00900720000000
....................................................................AGGGAACGGTTGCTGATGA.............................................................................................................1918.00800710000000
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................1837.3322012100000000
...........................................................................................................................ACAGTGGCTGTTCTTTTTT......................................................1917.00700700000000
...................................................................AAGGGAACGGTTGCTGATGATGTA.........................................................................................................2416.00600420000000
......................................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................2235.6717001700000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTG.......................................................2235.6717001700000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTC.......................................................2134.6714001400000000
....................................................................AGGGAACGGTTGCTGATGAT............................................................................................................2014.00400400000000
.........................................................................................................................TCACAGTGGCTGTTCTTTTTT......................................................2114.00400400000000
....................................................................AGGGAACGGTTGCTGATGATGTT.........................................................................................................2314.00400400000000
.................................................................AGAAGGGAACGGTTGCTGATGAC............................................................................................................2313.00300300000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTTT.....................................................2323.00600600000000
droEre2
ACCTTG-GTGC--------------------------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAG------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................................TATCACAGTGGCTGTTCTTTTT.......................................................22310965.6732897490027970056160
.......................................................................................................................TATCACAGTGGCTGTTCTTTT........................................................2132527.677583713686301510
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTT......................................................2311065.00106535103000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTC.......................................................223198.00594958500000
.......................................................................................................................TATCACAGTGGCTGTTCTTT.........................................................203195.675877550501240
........................................................................................................................ATCACAGTGGCTGTTCTTTTT.......................................................213131.673953702500000
....................................................................AGGGAACGGTGGCTGATGATGTA.........................................................................................................23144.004488028000
.......................................................................................................................TATCACAGTGGCTGTTCTTTC........................................................21326.007817700000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTC......................................................23319.005715600000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTA......................................................23318.6756163800020
........................................................................................................................ATCACAGTGGCTGTTCTTTT........................................................20317.3352411100000
.......................................................................................................................TATCACAGTGGCTGTTCTTC.........................................................20316.334904801000
.......................................................................................................................TATCACAGTGGCTGTTCTT..........................................................19314.3343103001110
....................................................................AGGGAACGGTGGCTGATGATGT..........................................................................................................22111.00113503000
.........................................................................................................................TCACAGTGGCTGTTCTTTTT.......................................................20310.673223900000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTT.....................................................2429.001801701000
....................................................................AGGGAACGGTGGCTGATGATG...........................................................................................................2116.0061203000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTA.......................................................2235.331661000000
........................................................................................................................ATCACAGTGGCTGTTCTTTTTT......................................................2215.0054100000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTG.....................................................2414.0042200000
.......................................................................................................................TATCACAGTGGCTGTTCTTTG........................................................2132.3374300000
..........................................................................................................................CACAGTGGCTGTTCTTTTT.......................................................1932.0061500000
........................................................................................................................ATCACAGTGGCTGTTCTTT.........................................................1932.0066000000
....................................................................AGGGAACGGTGGCTGATGATGC..........................................................................................................2212.0020200000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.....................................................2431.6750500000
......................................................................................................................ATATCACAGTGGCTGTTCTTTTT.......................................................2331.3342200000
......................................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................2231.3341300000
...........................................................................................................................ACAGTGGCTGTTCTTTTT.......................................................1831.3340400000
.......................................................................................................................TATCACAGTGGCTGTTCTTTCC.......................................................2231.0030300000
.....................................................................GGGAACGGTGGCTGATGATGTA.........................................................................................................2211.0011000000
...........................................................................................GTTC-GAAACTCTCACAATT------TA.............................................................................2111.0011000000
...........................................................................................................AATT------TATATCACAGTGGCTGTTCTTTTT.......................................................2811.0010100000
.......................................................................................................................TATCACAGTGGCTGTTCTTTA........................................................2131.0030300000
....................................................................AGGGAACGGTGGCTGATGATGTAT........................................................................................................2411.0010100000
.......................................................................GAACGGTGGCTGATGATG...........................................................................................................1811.0010001000
.......................................................................................................................TATCACAGTGGCTGTTCT...........................................................1831.0032100000
..........................................................................................................................CACAGTGGCTGTTCTTTTTTGT....................................................2211.0010100000
....................................................................AGGGAACGGTGGCTGATGA.............................................................................................................1911.0010001000
....................................................................AGGGAACGGTGGCTGATGATGTAG........................................................................................................2411.0010001000
.....................................................................GGGAACGGTGGCTGATGATGT..........................................................................................................2111.0011000000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTTC.....................................................2411.0010100000
.........................................................................................................................TCACAGTGGCTGTTCTTTTTTGT....................................................2311.0010100000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTCC......................................................2330.6720200000
.......................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.....................................................2430.6722000000
.........................................................................................................................TCACAGTGGCTGTTCTTTT........................................................1930.6720200000

Generated: 10/20/2015 at 10:17 PM