ID:

dmo-mir-6-2

 Coordinate:

scaffold_6496:20936137-20936217 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.0 -35.5

Flybase annnotation

pre_miRNA [Dmoj\mir-6-2-RM]; utr3 [utr3_minus_3614]; miRNA [Dmoj\miR-6-2-RA]

No Repeatable elements found

mature

  1. dmo-mir-6-3  scaffold_6496:20935964-20935985 -
  2. dmo-mir-6-2  scaffold_6496:20936142-20936163 -
  3. dmo-mir-6-1  scaffold_6496:20936318-20936339 -
star

Sense Strand Reads

GTGAAACATGAGCACAGTATTCGCAGACATATATCCAGAGAGATTGCGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATATGTATTTGTCAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAACAATTTGTCTGTGAAATAAATCTTGAATAGTGTT

******************************************.(((((..((((((.(((((((.(((((((.(((((((......(((((....)))))..)))))))))))))).))))))).))))))...)))))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V110

male body		 V056

head
........................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................... 22 0 3 175659.67 526979 526946 1 30 2 0
........................................................................................................TATCACAGTGGCTGTTCTTTT........................................................ 21 0 3 71420.67 214262 214242 1 14 5 0
........................................................................................................TGTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 12004.33 36013 36013 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................... 23 1 3 9565.33 28696 28690 0 6 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTT........................................................ 21 1 3 5603.33 16810 16810 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTT......................................................... 20 0 3 5461.67 16385 16380 0 3 2 0
........................................................................................................TATTACAGTGGCTGTTCTTTTT....................................................... 22 1 3 5223.00 15669 15669 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................... 22 1 3 4979.00 14937 14936 0 1 0 0
........................................................................................................TACCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 3858.67 11576 11576 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTTT........................................................ 21 1 3 2029.67 6089 6089 0 0 0 0
........................................................................................................TTTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 1942.67 5828 5828 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTTT........................................................ 21 1 3 1549.33 4648 4648 0 0 0 0
........................................................................................................TATCACAGCGGCTGTTCTTTTT....................................................... 22 1 3 1273.67 3821 3821 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTC........................................................ 21 1 3 1153.67 3461 3461 0 0 0 0
........................................................................................................TTTCACAGTGGCTGTTCTTTT........................................................ 21 1 3 819.67 2459 2459 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTTCC..................................................... 24 2 3 749.33 2248 2248 0 0 0 0
........................................................................................................TATCACAGTGGCTTTTCTTTTT....................................................... 22 1 3 722.00 2166 2166 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 678.00 2034 2034 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTTG...................................................... 23 0 2 623.50 1247 1244 0 1 2 0
........................................................................................................TATCACAGTGGCTGTTCTTC......................................................... 20 1 3 612.00 1836 1836 0 0 0 0
........................................................................................................CATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 598.33 1795 1795 0 0 0 0
........................................................................................................GATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 593.00 1779 1779 0 0 0 0
........................................................................................................TATCACAGCGGCTGTTCTTTT........................................................ 21 1 3 488.33 1465 1465 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTT......................................................... 20 1 3 451.33 1354 1354 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 395.00 1185 1185 0 0 0 0
.........................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................... 21 0 3 393.67 1181 1179 0 2 0 0
........................................................................................................AATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 373.67 1121 1121 0 0 0 0
........................................................................................................TATCTCAGTGGCTGTTCTTTTT....................................................... 22 1 3 370.67 1112 1112 0 0 0 0
........................................................................................................TATCACAGTTGCTGTTCTTTTT....................................................... 22 1 3 349.33 1048 1047 1 0 0 0
.......................................................................................................CTATCACAGTGGCTGTTCTTTTT....................................................... 23 1 3 348.33 1045 1045 0 0 0 0
........................................................................................................TATCACAGTGGCTGCTCTTTTT....................................................... 22 1 3 286.67 860 854 6 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTT.......................................................... 19 0 3 276.67 830 828 1 0 1 0
........................................................................................................TATTACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 271.67 815 815 0 0 0 0
........................................................................................................TGTTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 271.67 815 815 0 0 0 0
........................................................................................................TATCACATTGGCTGTTCTTTTT....................................................... 22 1 3 251.33 754 754 0 0 0 0
........................................................................................................CATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 248.00 744 744 0 0 0 0
........................................................................................................TATCACACTGGCTGTTCTTTTT....................................................... 22 1 3 243.67 731 731 0 0 0 0
........................................................................................................GATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 239.33 718 718 0 0 0 0
........................................................................................................TATCACAGTGGCTTTCTTTTT........................................................ 21 3 10 238.00 2380 2380 0 0 0 0
........................................................................................................TATCACAGTCGCTGTTCTTTTT....................................................... 22 1 3 237.67 713 711 2 0 0 0
........................................................................................................TATCACAGTGGCTTTTCTTTT........................................................ 21 1 3 233.33 700 700 0 0 0 0
........................................................................................................TATCACAGAGGCTGTTCTTTTT....................................................... 22 1 3 232.00 696 696 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................... 23 1 3 230.33 691 691 0 0 0 0
........................................................................................................TATCACAGGGGCTGTTCTTTTT....................................................... 22 1 3 218.33 655 655 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 213.00 639 639 0 0 0 0
........................................................................................................TATCACAGTGGATGTTCTTTTT....................................................... 22 1 3 212.00 636 636 0 0 0 0
........................................................................................................TATCACAGTGGCTGTCCTTTTT....................................................... 22 1 3 166.67 500 500 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCCTTTT....................................................... 22 1 3 165.67 497 497 0 0 0 0
........................................................................................................TATCTCAGTGGCTGTTCTTTT........................................................ 21 1 3 162.67 488 488 0 0 0 0
........................................................................................................TATCACAGTAGCTGTTCTTTTT....................................................... 22 1 3 153.00 459 437 22 0 0 0
........................................................................................................AATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 148.67 446 446 0 0 0 0
........................................................................................................TATCACGGTGGCTGTTCTTTTT....................................................... 22 1 3 146.33 439 435 4 0 0 0
........................................................................................................TATCACAGTTGCTGTTCTTTT........................................................ 21 1 3 146.00 438 438 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTTTC....................................................... 22 2 3 144.67 434 434 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTT......................................................... 20 1 3 144.00 432 432 0 0 0 0
........................................................................................................TATCACAGTGGCTGCTCTTTT........................................................ 21 1 3 143.67 431 423 8 0 0 0
.......................................................................................................CTATCACAGTGGCTGTTCTTTT........................................................ 22 1 3 142.33 427 427 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTTGG..................................................... 22 0 1 142.00 142 142 0 0 0 0
........................................................................................................TATCACAGTGACTGTTCTTTTT....................................................... 22 1 3 139.00 417 400 17 0 0 0
........................................................................................................TATCACAGTGGCTGATCTTTTT....................................................... 22 1 3 138.33 415 414 1 0 0 0
.........................................................................................................ATCACAGTGGCTGTTCTTTT........................................................ 20 0 3 132.33 397 396 0 1 0 0
........................................................................................................TATCACAGTGGCTGTTTTTTTT....................................................... 22 1 3 129.67 389 389 0 0 0 0
........................................................................................................TGTTACAGTGGCTGTTCTTTT........................................................ 21 2 3 125.67 377 377 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTGT....................................................... 22 1 3 125.67 377 377 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 123.00 369 369 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTT......................................................... 20 1 3 118.33 355 355 0 0 0 0
........................................................................................................TATCACATTGGCTGTTCTTTT........................................................ 21 1 3 116.67 350 350 0 0 0 0
........................................................................................................TATCACAGTGGCTGTGCTTTTT....................................................... 22 1 3 113.67 341 341 0 0 0 0
........................................................................................................TTTCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 110.33 331 331 0 0 0 0
........................................................................................................TATCACACTGGCTGTTCTTTT........................................................ 21 1 3 110.33 331 331 0 0 0 0
........................................................................................................TATCGCAGTGGCTGTTCTTTTT....................................................... 22 1 3 108.67 326 326 0 0 0 0
........................................................................................................TATCAGAGTGGCTGTTCTTTTT....................................................... 22 1 3 105.33 316 316 0 0 0 0
........................................................................................................TATCATAGTGGCTGTTCTTTTT....................................................... 22 1 3 104.00 312 312 0 0 0 0
........................................................................................................TATCACAGTGCCTGTTCTTTTT....................................................... 22 1 3 101.00 303 303 0 0 0 0
........................................................................................................TATCACAGTGGATGTTCTTTT........................................................ 21 1 3 100.00 300 300 0 0 0 0
........................................................................................................TATCACAGTCGCTGTTCTTTT........................................................ 21 1 3 98.67 296 296 0 0 0 0
.........................................................................................................ATCACAGTGGCTGTTCTTTTTG...................................................... 22 0 2 95.50 191 191 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTT....................................................... 20 0 3 89.67 269 269 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................... 22 1 3 89.67 269 269 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTC........................................................ 21 2 3 88.00 264 264 0 0 0 0
........................................................................................................TATCACAGAGGCTGTTCTTTT........................................................ 21 1 3 88.00 264 264 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTCTT....................................................... 22 1 3 86.67 260 260 0 0 0 0
.........................................................................................................ATCACAGTGGCTGTTCTTTTTGG..................................................... 23 0 1 86.00 86 86 0 0 0 0
........................................................................................................TATCACAGGGGCTGTTCTTTT........................................................ 21 1 3 83.33 250 250 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTTGGT.................................................... 23 0 1 80.00 80 80 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCCTTT........................................................ 21 1 3 78.67 236 236 0 0 0 0
........................................................................................................TATCACAGTGGCCGTTCTTTTT....................................................... 22 1 3 78.00 234 232 2 0 0 0
........................................................................................................TATCACAATGGCTGTTCTTTTT....................................................... 22 1 3 75.00 225 225 0 0 0 0
.........................................................AGGGAACTGCTGCTGCTGATATA..................................................................................................... 23 0 1 75.00 75 58 17 0 0 0
........................................................................................................TATCACAGTGGCTGATCTTTT........................................................ 21 1 3 74.67 224 224 0 0 0 0
........................................................................................................TATCACAGTGGCTGTCCTTTT........................................................ 21 1 3 74.00 222 222 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTCTTT....................................................... 22 1 3 73.67 221 221 0 0 0 0
........................................................................................................TATCACAGTGTCTGTTCTTTTT....................................................... 22 1 3 70.33 211 211 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTCC...................................................... 23 2 3 68.67 206 206 0 0 0 0
........................................................................................................TTTCACAGTGGCTGTTCTTT......................................................... 20 1 3 68.33 205 205 0 0 0 0
........................................................................................................TATCACAGTAGCTGTTCTTTT........................................................ 21 1 3 65.67 197 185 12 0 0 0
...........................................................................................................CACAGTGGCTGTTCTTTTT....................................................... 19 0 3 65.33 196 196 0 0 0 0
........................................................................................................TATTACAGCGGCTGTTCTTTTT....................................................... 22 2 3 64.00 192 192 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTGTTTTT....................................................... 22 1 3 64.00 192 191 1 0 0 0
........................................................................................................TATCACGGTGGCTGTTCTTTT........................................................ 21 1 3 63.67 191 185 6 0 0 0
........................................................................................................TGTCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 63.00 189 189 0 0 0 0
........................................................................................................TATCACAGCGGCTGTTCTTTTTC...................................................... 23 2 3 60.67 182 182 0 0 0 0
.........................................................................................................AGCACAGTGGCTGTTCTTTTT....................................................... 21 1 3 60.00 180 180 0 0 0 0
........................................................................................................TATCACAGTGACTGTTCTTTT........................................................ 21 1 3 59.67 179 171 8 0 0 0
.......................................................................................................CGATCACAGTGGCTGTTCTTTTT....................................................... 23 2 3 59.33 178 178 0 0 0 0
........................................................................................................TTTTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 57.00 171 171 0 0 0 0
........................................................................................................TATCACAGTGGCTATTCTTTTT....................................................... 22 1 3 56.67 170 169 1 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.................................................... 25 3 3 53.67 161 161 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCGTTTT....................................................... 22 1 3 53.33 160 160 0 0 0 0
........................................................................................................TATCGCAGTGGCTGTTCTTTT........................................................ 21 1 3 53.00 159 159 0 0 0 0
........................................................................................................TATCACAGTGGCTGGTCTTTTT....................................................... 22 1 3 50.33 151 139 11 0 1 0
........................................................................................................TTTCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 49.67 149 149 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTTTG...................................................... 23 1 2 49.50 99 99 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTGTT....................................................... 22 1 3 49.00 147 147 0 0 0 0
............................................................................................................ACAGTGGCTGTTCTTTTT....................................................... 18 0 3 47.67 143 143 0 0 0 0
........................................................................................................TACCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 47.67 143 143 0 0 0 0
........................................................................................................TGTCACAGTGGCTTTTCTTTTT....................................................... 22 2 3 47.00 141 141 0 0 0 0
........................................................................................................TATCACAGTGCCTGTTCTTTT........................................................ 21 1 3 47.00 141 140 1 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTG........................................................ 21 1 3 46.67 140 140 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTC......................................................... 20 2 3 46.33 139 139 0 0 0 0
........................................................................................................TATCACAGTGGTTGTTCTTTTT....................................................... 22 1 3 46.00 138 134 4 0 0 0
........................................................................................................TGCCACAGTGGCTGTTCTTTTT....................................................... 22 2 3 45.67 137 137 0 0 0 0
........................................................................................................TACTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 45.67 137 137 0 0 0 0
........................................................................................................TATCACAGTGGCTGTGCTTTT........................................................ 21 1 3 45.00 135 135 0 0 0 0
........................................................................................................TATCATAGTGGCTGTTCTTTT........................................................ 21 1 3 44.67 134 134 0 0 0 0
........................................................................................................TATCACAGTGGGTGTTCTTTTT....................................................... 22 1 3 44.00 132 131 1 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTTTCC..................................................... 24 3 3 43.67 131 131 0 0 0 0
........................................................................................................TATCAGAGTGGCTGTTCTTTT........................................................ 21 1 3 41.33 124 124 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTCT........................................................ 21 1 3 41.00 123 123 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTTGG..................................................... 24 0 1 41.00 41 41 0 0 0 0
........................................................................................................TAACACAGTGGCTGTTCTTTTT....................................................... 22 1 3 40.67 122 122 0 0 0 0
........................................................................................................TATCACAGTGGCCGTTCTTTT........................................................ 21 1 3 39.33 118 118 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTTTTTT........................................................ 21 1 3 38.33 115 115 0 0 0 0
........................................................................................................TGTCTCAGTGGCTGTTCTTTTT....................................................... 22 2 3 38.00 114 114 0 0 0 0
........................................................................................................TATCACAGTGGCTTTTCTTTTTC...................................................... 23 2 3 37.67 113 113 0 0 0 0
........................................................................................................TATCACAGCGGCTGTTCTTT......................................................... 20 1 3 36.33 109 109 0 0 0 0
........................................................................................................TATCACAGTGGCTGTACTTTTT....................................................... 22 1 3 36.33 109 109 0 0 0 0
........................................................................................................TATCACAGTGTCTGTTCTTTT........................................................ 21 1 3 34.67 104 104 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTTGC..................................................... 24 1 2 34.50 69 69 0 0 0 0
........................................................................................................TATCACAGTGGCAGTTCTTTTT....................................................... 22 1 3 34.33 103 103 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTATTTTT....................................................... 22 1 3 34.33 103 103 0 0 0 0
........................................................................................................CATCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 34.00 102 102 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTCTT........................................................ 21 1 3 33.33 100 100 0 0 0 0
......................................................................................................TCTATCACAGTGGCTGTTCTTTTT....................................................... 24 1 3 31.67 95 95 0 0 0 0
.......................................................................................................ATATCACAGTGGCTGTTCTTT......................................................... 21 0 3 31.33 94 94 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTT........................................................ 19 0 3 31.33 94 94 0 0 0 0
........................................................................................................TGTCACAGCGGCTGTTCTTTT........................................................ 21 2 3 31.33 94 94 0 0 0 0
........................................................................................................TATCACAATGGCTGTTCTTTT........................................................ 21 1 3 30.33 91 91 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTTGGC.................................................... 23 1 1 30.00 30 30 0 0 0 0
........................................................................................................TAGCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 30.00 90 90 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTATT....................................................... 22 1 3 29.67 89 89 0 0 0 0
........................................................................................................TATCACAGTGGCTGGTCTTTT........................................................ 21 1 3 29.00 87 80 7 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................... 22 1 3 28.67 86 86 0 0 0 0
...........................................................................................................CACAGTGGCTGTTCTTTT........................................................ 18 0 3 28.33 85 85 0 0 0 0
........................................................................................................TATCACAGTTGCTGTTCTTTTTC...................................................... 23 2 3 28.00 84 84 0 0 0 0
........................................................................................................GATCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 27.67 83 83 0 0 0 0
........................................................................................................TATCACAGTGGCTCTTCTTTTT....................................................... 22 1 3 27.00 81 80 1 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTGTTT....................................................... 22 1 3 26.67 80 80 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCT........................................................... 18 0 3 26.33 79 79 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTTC........................................................ 21 2 3 26.00 78 78 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTTGGTT................................................... 24 0 1 26.00 26 26 0 0 0 0
........................................................................................................TATCACAGTGGCTTTTCTTTTC....................................................... 22 2 3 26.00 78 78 0 0 0 0
........................................................................................................TATCACAGCGGCTGTTCTTTTC....................................................... 22 2 3 25.33 76 76 0 0 0 0
........................................................................................................TATCACAGTGGTTGTTCTTTT........................................................ 21 1 3 23.67 71 70 1 0 0 0
........................................................................................................TATCACAGTGGCTGTTGTTTT........................................................ 21 1 3 23.33 70 69 1 0 0 0
........................................................................................................TATTACAGTGGCTGCTCTTTTT....................................................... 22 2 3 23.33 70 70 0 0 0 0
........................................................................................................TATCACAGTGGCTATTCTTTT........................................................ 21 1 3 23.00 69 68 1 0 0 0
........................................................................................................TGTCACATTGGCTGTTCTTTTT....................................................... 22 2 3 22.67 68 68 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTTCT....................................................... 22 1 3 22.67 68 68 0 0 0 0
........................................................................................................TATCTCAGTGGCTGTTCTTTTTC...................................................... 23 2 3 22.67 68 68 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTGT........................................................ 21 1 3 22.67 68 68 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTTC........................................................ 21 2 3 22.33 67 67 0 0 0 0
........................................................................................................TATTACAGCGGCTGTTCTTTT........................................................ 21 2 3 21.67 65 65 0 0 0 0
........................................................................................................TTTTACAGTGGCTGTTCTTTT........................................................ 21 2 3 21.33 64 64 0 0 0 0
........................................................................................................CATCACAGTGGCTGTTCTTT......................................................... 20 1 3 21.00 63 63 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTTTTG...................................................... 23 1 2 21.00 42 42 0 0 0 0
.........................................................................................................ATAACAGTGGCTGTTCTTTTT....................................................... 21 1 3 20.00 60 60 0 0 0 0
.........................................................................................................AGCACAGTGGCTGTTCTTTT........................................................ 20 1 3 20.00 60 60 0 0 0 0
........................................................................................................TATCACTGTGGCTGTTCTTTTT....................................................... 22 1 3 19.67 59 59 0 0 0 0
........................................................................................................TGTCTCAGTGGCTGTTCTTTT........................................................ 21 2 3 19.33 58 58 0 0 0 0
........................................................................................................TATCACAGTGGGTGTTCTTTT........................................................ 21 1 3 19.33 58 56 2 0 0 0
.......................................................................................................CGATCACAGTGGCTGTTCTTTT........................................................ 22 2 3 19.33 58 58 0 0 0 0
........................................................................................................TGTCACACTGGCTGTTCTTTTT....................................................... 22 2 3 19.33 58 58 0 0 0 0
........................................................................................................TATTACAGTGGCTTTTCTTTTT....................................................... 22 2 3 19.33 58 58 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTTTTCC..................................................... 24 3 3 19.00 57 57 0 0 0 0
........................................................................................................TGTCACAGTGGCTTTTCTTTT........................................................ 21 2 4 18.75 75 75 0 0 0 0
....................................................................................................GATCTATCACAGTGGCTGTTCTTTTT....................................................... 26 3 3 18.67 56 56 0 0 0 0
........................................................................................................AATCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 18.67 56 56 0 0 0 0
........................................................................................................TATCACAGTCGCTGTTCTTTTTC...................................................... 23 2 3 18.67 56 56 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCGTTT........................................................ 21 1 3 18.33 55 55 0 0 0 0
........................................................................................................TAACACAGTGGCTGTTCTTTT........................................................ 21 1 3 18.33 55 55 0 0 0 0
.......................................................................................................CTATCACAGTGGCTGTTCTTTTTC...................................................... 24 2 3 17.67 53 53 0 0 0 0
........................................................................................................TGTCACAGTGGCTGCTCTTTTT....................................................... 22 2 3 17.67 53 53 0 0 0 0
........................................................................................................CATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 17.33 52 52 0 0 0 0
.........................................................................................................ATCTCAGTGGCTGTTCTTTTT....................................................... 21 1 3 17.33 52 52 0 0 0 0
........................................................................................................TATCACACTGGCTGTTCTTTTTC...................................................... 23 2 3 17.33 52 52 0 0 0 0
........................................................................................................GATCACAGTGGCTGTTCTTT......................................................... 20 1 3 17.00 51 51 0 0 0 0
........................................................................................................TATCACATTGGCTGTTCTTTTTC...................................................... 23 2 3 17.00 51 51 0 0 0 0
........................................................................................................TATCACAGTGGCTTTTCTTT......................................................... 20 1 3 17.00 51 51 0 0 0 0
........................................................................................................TACTACAGTGGCTGTTCTTTT........................................................ 21 2 3 16.33 49 49 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTGTT........................................................ 21 1 3 16.33 49 49 0 0 0 0
.........................................................................................................ATCACAGTGGCTGTTCTTTTTC...................................................... 22 1 3 16.00 48 48 0 0 0 0
........................................................................................................TATCTCAGTGGCTGTTCTTT......................................................... 20 1 3 15.67 47 47 0 0 0 0
........................................................................................................TACCACAGCGGCTGTTCTTTT........................................................ 21 2 3 15.67 47 47 0 0 0 0
........................................................................................................GATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 15.67 47 47 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCATTTT....................................................... 22 1 3 15.33 46 46 0 0 0 0
........................................................................................................TATCACAACGGCTGTTCTTTTT....................................................... 22 2 3 15.33 46 46 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTTTTCC..................................................... 24 3 4 15.25 61 61 0 0 0 0
.........................................................AGGGAACTGCTGCTGCTGATAT...................................................................................................... 22 0 1 15.00 15 10 4 0 0 1
........................................................................................................TATCACAGTGGCTGTACTTTT........................................................ 21 1 3 15.00 45 45 0 0 0 0
........................................................................................................TATCACAGTGGCTCTTCTTTT........................................................ 21 1 3 14.67 44 43 1 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTC.......................................................... 19 1 3 14.67 44 44 0 0 0 0
........................................................................................................TATCACAGTGGCAGTTCTTTT........................................................ 21 1 3 14.00 42 42 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTT.......................................................... 19 1 3 14.00 42 42 0 0 0 0
.........................................................................................................AGCACAGTGGCTGTTCTTTTTG...................................................... 22 1 2 14.00 28 28 0 0 0 0
..................................................................................................ACGATCTATCACAGTGGCTGTTCTTTTT....................................................... 28 3 1 14.00 14 14 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTC......................................................... 20 2 3 14.00 42 42 0 0 0 0
........................................................................................................TACCACAGTGGCTTTTCTTTTT....................................................... 22 2 3 13.67 41 41 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTTAT........................................................ 21 1 3 13.67 41 41 0 0 0 0
........................................................................................................TACCACAGTGGCTGTTCTTTTTG...................................................... 23 1 2 13.50 27 27 0 0 0 0
........................................................................................................TATCACCGTGGCTGTTCTTTTT....................................................... 22 1 3 13.33 40 40 0 0 0 0
........................................................................................................TCTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 13.33 40 40 0 0 0 0
....................................................................................................GATCTATCACAGTGGCTGTTCTTTT........................................................ 25 3 3 13.33 40 40 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTCTATTT....................................................... 22 1 3 13.00 39 39 0 0 0 0
........................................................................................................TTTCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 13.00 39 39 0 0 0 0
.......................................................................................................CTATCACAGTGGCTGTTCTTTTC....................................................... 23 2 3 13.00 39 39 0 0 0 0
........................................................................................................TAGCACAGTGGCTGTTCTTTT........................................................ 21 1 3 12.67 38 38 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTTTA...................................................... 23 2 3 12.67 38 38 0 0 0 0
........................................................................................................TGTTACAGTGGCTGTTCTTTTTC...................................................... 23 3 4 12.50 50 50 0 0 0 0
........................................................................................................TATCACAGTTGCTGTTCTTTTC....................................................... 22 2 3 12.33 37 37 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTC......................................................... 20 2 4 12.25 49 49 0 0 0 0
........................................................................................................TATCACAGTGGCTTTCTTTTTT....................................................... 22 3 6 12.17 73 73 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTTGGTC................................................... 24 1 1 12.00 12 12 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCCTTTT....................................................... 22 2 3 12.00 36 36 0 0 0 0
........................................................................................................TATGACAGTGGCTGTTCTTTTT....................................................... 22 1 3 12.00 36 36 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTTTTT......................................................... 20 1 3 12.00 36 36 0 0 0 0
........................................................................................................TATTACAGTCGCTGTTCTTTTT....................................................... 22 2 3 11.67 35 35 0 0 0 0
........................................................................................................TATCACAGGGGCTGTTCTTTTTC...................................................... 23 2 3 11.67 35 35 0 0 0 0
........................................................................................................TGCCACAGTGGCTGTTCTTTT........................................................ 21 2 5 11.60 58 58 0 0 0 0
........................................................................................................TATCACAGTGGCTGCTCTTTTC....................................................... 22 2 3 11.33 34 34 0 0 0 0
........................................................................................................TATCACAGTGGATGTTCTTTTTC...................................................... 23 2 3 11.33 34 34 0 0 0 0
......................................................................................................TCTATCACAGTGGCTGTTCTTTT........................................................ 23 1 3 11.33 34 34 0 0 0 0
.........................................................................................................ATCACAGTGGCTGTTCTTT......................................................... 19 0 3 11.00 33 33 0 0 0 0
........................................................................................................TATCACAGTGGCTGTCCTTTTTC...................................................... 23 2 3 11.00 33 33 0 0 0 0
.........................................................ATGGAACTGCTGCTGCTGATATA..................................................................................................... 23 1 1 11.00 11 11 0 0 0 0
........................................................................................................TATCACAGTGGCTGCTCTTTTTC...................................................... 23 2 3 11.00 33 33 0 0 0 0
........................................................................................................TGTCACAGTGGCTGCTCTTTT........................................................ 21 2 3 10.67 32 32 0 0 0 0
........................................................................................................TATCACAGTAGCTGTTCTTTTTC...................................................... 23 2 3 10.67 32 32 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTTG...................................................... 21 0 2 10.50 21 21 0 0 0 0
.........................................................................................................TTCACAGTGGCTGTTCTTTTT....................................................... 21 1 3 10.33 31 31 0 0 0 0
.........................................................................................................TACACAGTGGCTGTTCTTTTT....................................................... 21 2 3 10.33 31 31 0 0 0 0
........................................................................................................TATTTCAGTGGCTGTTCTTTTT....................................................... 22 2 3 10.33 31 31 0 0 0 0
........................................................................................................AATCACAGTGGCTGTTCTTT......................................................... 20 1 3 10.33 31 31 0 0 0 0
........................................................................................................TTTCACAGTGGCTGTTCTTTC........................................................ 21 2 4 10.25 41 41 0 0 0 0
........................................................................................................AATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 10.00 30 30 0 0 0 0
.......................................................................................................CTATCACAGTGGCTTTTCTTTTT....................................................... 23 2 3 10.00 30 30 0 0 0 0
.......................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................ 22 0 3 10.00 30 30 0 0 0 0
........................................................................................................TATTACAGTGGCTGCTCTTTT........................................................ 21 2 3 10.00 30 30 0 0 0 0
........................................................................................................TATCACGTTGGCTGTTCTTTTT....................................................... 22 2 3 10.00 30 30 0 0 0 0
.........................................................................................................AGCACAGTGGCTGTTCTTTTTGG..................................................... 23 1 1 10.00 10 10 0 0 0 0
........................................................................................................TATCACAGTGGATGTTCTTT......................................................... 20 1 3 10.00 30 30 0 0 0 0
........................................................................................................TGTCACAGTTGCTGTTCTTTTT....................................................... 22 2 4 9.75 39 39 0 0 0 0
........................................................................................................TGTCACAGTGGCTGTTCTTTGT....................................................... 22 2 3 9.67 29 29 0 0 0 0
........................................................................................................TATCTCAGTGGCTGTTCTTTTC....................................................... 22 2 3 9.67 29 29 0 0 0 0
..........................................................................................................TATCAGTGGCTGTTCTTTTT....................................................... 20 2 5 9.40 47 47 0 0 0 0
...........................................................................................................CACAGTGGCTGTTCTTTTTC...................................................... 20 1 3 9.33 28 28 0 0 0 0
.....................................................................................................ATCTATCACAGTGGCTGTTCTTTTT....................................................... 25 2 3 9.33 28 28 0 0 0 0
........................................................................................................TATCACAGAGGCTGTTCTTTTTC...................................................... 23 2 3 9.33 28 28 0 0 0 0
........................................................................................................TGTCACGGTGGCTGTTCTTTTT....................................................... 22 2 3 9.33 28 28 0 0 0 0
........................................................................................................TATTACAGTGGCTTTTCTTTT........................................................ 21 2 3 9.33 28 28 0 0 0 0
........................................................................................................TATTACAGTGGCTGTTCTTTTTA...................................................... 23 2 3 9.00 27 27 0 0 0 0
.......................................................................................................CTATCACAGTGGCTGTTCTTT......................................................... 21 1 3 9.00 27 27 0 0 0 0
..................................................................................................ACGATCTATCACAGTGGCTGTTCTTTT........................................................ 27 3 1 9.00 9 9 0 0 0 0
..........................................................................................................TCACAGTGGCTGTTCTTTTTGC..................................................... 22 1 2 9.00 18 18 0 0 0 0
........................................................................................................TATCACGGTGGCTGTTCTTTTTC...................................................... 23 2 3 9.00 27 27 0 0 0 0
........................................................................................................TACCACAGTCGCTGTTCTTTTT....................................................... 22 2 3 9.00 27 27 0 0 0 0
........................................................................................................TATCACAGTGGCTGTTATTTT........................................................ 21 1 3 8.67 26 26 0 0 0 0
........................................................................................................TGTCACAGTCGCTGTTCTTTTT....................................................... 22 2 3 8.67 26 26 0 0 0 0
........................................................................................................TATCACAGTGACTGTTCTTTTTC...................................................... 23 2 3 8.67 26 23 3 0 0 0
........................................................................................................TATCACAGTCGCTGTTCTTTTC....................................................... 22 2 3 8.67 26 26 0 0 0 0
........................................................................................................TTTCACAGTGGCTGTTCTTC......................................................... 20 2 3 8.67 26 26 0 0 0 0
........................................................................................................TGTCGCAGTGGCTGTTCTTTTT....................................................... 22 2 3 8.33 25 25 0 0 0 0
........................................................................................................TATCACAGTGGCTGATCTTTTTC...................................................... 23 2 3 8.33 25 25 0 0 0 0
........................................................................................................TATTACATTGGCTGTTCTTTTT....................................................... 22 2 3 8.33 25 25 0 0 0 0
........................................................................................................TATCACATTGGCTGTTCTTT......................................................... 20 1 3 8.33 25 25 0 0 0 0
........................................................................................................TATCACACCGGCTGTTCTTTTT....................................................... 22 2 3 8.33 25 25 0 0 0 0
........................................................................................................CGTCACAGTGGCTGTTCTTTTT....................................................... 22 2 3 8.00 24 24 0 0 0 0
.........................................................AGGGAACTGCTGCTGCTGATA....................................................................................................... 21 0 1 8.00 8 7 1 0 0 0
........................................................................................................TGTCACAGGGGCTGTTCTTTTT....................................................... 22 2 3 7.67 23 23 0 0 0 0
........................................................................................................TGTCACACTGGCTGTTCTTTT........................................................ 21 2 3 7.67 23 23 0 0 0 0
........................................................................................................TATCACAGAGGCTGTTCTTT......................................................... 20 1 3 7.67 23 23 0 0 0 0
........................................................................................................TATCACTGTGGCTGTTCTTTT........................................................ 21 1 3 7.67 23 23 0 0 0 0
........................................................................................................TACCACAGTTGCTGTTCTTTTT....................................................... 22 2 3 7.67 23 23 0 0 0 0
........................................................................................................TATCACACTGGCTGTTCTTT......................................................... 20 1 3 7.67 23 23 0 0 0 0
........................................................................................................TATTACGGTGGCTGTTCTTTTT....................................................... 22 2 4 7.50 30 30 0 0 0 0
...................................................................................................CGATCTATCACAGTGGCTGTTCTTTTT....................................................... 27 3 2 7.50 15 15 0 0 0 0
........................................................................................................TATCACAGGGGCTGTTCTTT......................................................... 20 1 3 7.33 22 21 1 0 0 0
........................................................................................................TATCACAGCGGCTGTTCTTTC........................................................ 21 2 3 7.33 22 22 0 0 0 0
........................................................................................................TATCACATTGGCTGTTCTTTTC....................................................... 22 2 3 7.33 22 22 0 0 0 0
.........................................................................................................ATCACAGTGGCTGTTCTTTTC....................................................... 21 1 3 7.33 22 22 0 0 0 0
........................................................................................................TGTTACAGTGGCTGTTCTTTTC....................................................... 22 3 4 7.25 29 29 0 0 0 0

Anti-sense strand reads

CACTTTGTACTCGTGTCATAAGCGTCTGTATATAGGTCTCTCTAACGCAAATTGGCGTCCCTTGACGACGACGACTATATGATATACATAAACAGTCATGAGATATAGTGTCACCGACAAGAAAAACCAACGTAGCGTTTATCGGTTGTTAAACAGACACTTTATTTAGAACTTATCACAA

****************************************.(((((..((((((.(((((((.(((((((.(((((((......(((((....)))))..)))))))))))))).))))))).))))))...)))))..****************************************** 		Read size # Mismatch Hit Count Total Norm Total V056

head

 V049

head

 M046

female body

 V110

male body
............................................................CTCGACGACGACGACTTTATG.................................................................................................... 21 2 2 0.50 1 1 0 0 0
.............................................................TCGACGACGACGACTTTATG.................................................................................................... 20 2 18 0.44 8 0 0 5 3
...............................................................GACGACGACGACTTTATG.................................................................................................... 18 1 8 0.38 3 0 2 1 0
...........................................................................................................................................TCTCGGTTGTTAGACAGA........................ 18 2 7 0.14 1 0 1 0 0
...........................................................TCTCGACGACGACGACTTTATG.................................................................................................... 22 3 8 0.13 1 0 0 0 1
...............................................................GTAGACGACGACTGTATGATA................................................................................................. 21 3 10 0.10 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20936087-20936267 - dmo-mir-6-2 Known_mirbase GTGAAACA---TGAGCACA-GTATTCG-------------------C-----AGACA-----------------TA-TATCCAGAGAGATTGCGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTATAT--GT--ATTT--------------G---T--CAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAACAATTTGTC---TGTGAAATAAATCTTGAATAGTGTT
droVir3 scaffold_12875:4112736-4112909 + dvi-mir-6-2 Known_mirbase GTGAAAAT---TGA--ATAAATATTTG-------------------C-----TGACA-----------------AA-TTTCTTATGT-GCTATGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATA--G--A----------------TTATAT--CG--ATTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAACAATTTGTCAGCC---GAAAGTACTT---TTATTATT
droGri2 scaffold_5621:3479-3655 + dgr-mir-6-5 Known_mirbase GTACAACAAAATGA--GTA-ATG----TTAT-------CAACCGCT-------GC-A-----------------TAAATTCACCAAT-GCTATGT--TTAACCACAGGGAACTGCTGCTGCTGATATACAACC-----ATAT---------------TTA-TACA----CGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAACGATTTGTCAGTGTTTTA----TTCT---ATT---TT
droWil2 scf2_1100000004514:1651097-1651283 - dwi-mir-6-2 Known_mirbase CAA-----------------------------------------------------AAATATTATTTAGTGAAGTG-TTTTTTAAAG-TTTTTGT--TTAACCGCAGGGAACTGTCGCTGCTGATATATA-T----ATATTATTGTTATATATAAT-TTA-AAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAACAACTTTATTTTTA--GA-TTTCTCTGTTTTACCGTT
dp5 3:12676908-12677081 - dps-mir-6-2 Known_mirbase GAA--TCGCGTTGT--GCA-GTG----CTTC-------CAGTTACT-------GACA-----------------AA-TCCCC---GT-GCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCT--------------T---TGACA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCG-----------CC---GC
droPer2 scaffold_2:8906591-8906750 + dpe-mir-6-3 Known_mirbase GAA--TCGCGTTGT--GCA-GTG----CTTC-------CAGTTACT-------CACA-----------------AA-TCCCC---GT-GCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCT--------------T---TGACA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTC----------------------------
droAna3 scaffold_13266:9731923-9732092 + dan-mir-6-2 Known_mirbase GTGATTTT----------------TCG------TTATC--------CGA---CGACA-----------------AA-TAT-T---AT-TCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAA--------------A---AAAAA---TCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCACCGATTTGTCATTTGTGGCACGCATTT---GTG---TC
droBip1 scf7180000396427:874898-875040 + TAT------------------------------------------------------------------------------T---AT-TCCGGTG--TTAACCCCAGGGAACTGTTGCTGCTGATATATTATACTTTC--------------------GA--A--CTATCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAACAATTTGTCATCTGTGGCACGAATTT---GTGGCATC
droKik1 scf7180000302679:88787-88935 - TTGGGTTT----------------------ATATTTTC--------TTAGTGTGACA-----------------TT-TCT-T---CT-ACCGTGG--TTAGCCCCAGGGAACTGCTGCTGCTGATATATTATC-------------------------AA--GAA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAGCGATTTGTCATCA---GCGCG----------------
droFic1 scf7180000454039:847468-847618 - CGT---------------------TCG----TAT------------C-----TGACA-----------------AA-CATCC---AT-TCCGTTT--TTAACCCTAGGGAACTTCTGCTGCTGATATATTATC-------------------------GA--AAA----CTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAGCGATTTGTCATCTGCGGCACGCATTC---GTG---TC
droEle1 scf7180000491201:2013406-2013561 - TTG------------------------TTTTCATTTTC--------C-----CGACA-----------------AA-TACCC---AT-TCCGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATC-------------------------AA--AAA----CTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAGCGATTTGTCATACAGGGAACGGATTT---GTG---TC
droRho1 scf7180000780066:74216-74343 + GT---------------------------------------------------------------------------------------CTGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATC-------------------------GA--AAA----CTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAGCGATTTGTCATCCAGGAAACGCATTT---GTG---TC
droBia1 scf7180000302143:3059247-3059393 - AGT-------------------TCTCC-------------------C-----TGACA-----------------AG-TATCT---AT-TCCGTTC--TCAACCCCAGGGAACTTCTGCTGCTGATATATTAAC-------------------------TA--AAG-------CTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGGCACGCATTT---GTG---TC
droTak1 scf7180000415384:84582-84723 + CT---------------------------------------------------GACA-----------------AA-CACCC---AT-TCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA--AAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGGCATGCATTT---GTG---TC
droEug1 scf7180000409474:2397379-2397521 + TT---------------------------------------------------GACA-----------------AA-CAACC---AT-GCCGTTT--TTAACCCCAGGGAACCTCTGCTGTTGATATATAATC-------------------------AG-GAAA----CTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCATCGATTTGTCATCTGTGGCATGCATTT---GTG---TC
dm3 chr2R:15548328-15548477 - dme-mir-6-2 Known_mirbase TTT--------------------TTGG-------------------C-----ACACG-----------------AA-TAACC---AT-GCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA-AAAA----CTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCACGCATTT---GTG---TC
droSim2 2r:16195600-16195748 - dsi-mir-6-2 Known_mirbase TTT---------------------TCG-------------------C-----ACACG-----------------AA-TAACC---AT-GCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA-AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCACGCATTT---GTG---TC
droSec2 scaffold_1:13063061-13063211 - dse-mir-6-2 Known_mirbase TTT-------------------TTTTG-------------------C-----ACACG-----------------AA-TAACC---AT-GCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA-AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCACGCATTT---GTG---TC
droYak3 2R:13624304-13624461 + dya-mir-6-2 Known_mirbase TTGTT--GCTTT----------TTTTG-------------------C-----TCACA-----------------AG-TAACC---AT-ACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATT-------------------------GA-GAAA----CTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCCCGCATTT---TTG---TC
droEre2 scaffold_4845:9748582-9748726 - der-mir-6-2 Known_mirbase TGG-------------------------------------------T-----GCACG-----------------AA-AACCC---AT-ACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATT-------------------------GA--AAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAGCGATTTGTCATTTGTGGCACGCATTT---GTG---TC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GTGAAACA---TGAGCACA-GTATTCG-------------------C-----AGACA-----------------TA-TATCCAGAGAGATTGCGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTATAT--GT--ATTT--------------G---T--CAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAACAATTTGTC---TGTGAAATAAATCTTGAATAGTGTTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................223175659.67526979301005269462
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................21371420.67214262141002142425
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................2339565.33286966000286900
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................2035461.67163853000163802
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................2234979.00149371000149360
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................2131153.673461000034610
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC........................................................243749.332248000022480
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................232623.501247100012442
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................203612.001836000018360
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................213393.671181200011790
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................193276.6783001008281
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................233230.3369100006910
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG........................................................221142.0014200001420
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................203132.3339710003960
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................22295.5019100001910
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................20389.6726900002690
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................22389.6726900002690
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG........................................................23186.00860000860
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT.......................................................23180.00800000800
.........................................................................................................AGGGAACTGCTGCTGCTGATATA...............................................................................................................................23175.007501700580
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.........................................................23368.6720600002060
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................19365.3319600001960
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.......................................................25353.6716100001610
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................18347.6714300001430
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................21346.6714000001400
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG........................................................24141.00410000410
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC........................................................24234.50690000690
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTT............................................................21331.33940000940
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...........................................................19331.33940000940
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGC.......................................................23130.00300000300
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................22328.67860000860
..................................................................................................................................................................................CACAGTGGCTGTTCTTTT...........................................................18328.33850000850
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................18326.33790000790
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTT......................................................24126.00260000260
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.........................................................22316.00480000480
.........................................................................................................AGGGAACTGCTGCTGCTGATAT................................................................................................................................22115.00150401100
...............................................................................................................................................................................TATCACAGTGGCTGTTCTC.............................................................19314.67440000440
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTC......................................................24112.00120000120
................................................................................................................................................................................ATCACAGTGGCTGTTCTTT............................................................19311.00330000330
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.........................................................21210.50210000210
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................22310.00300000300
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTTC.........................................................2039.33280000280
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC........................................................2229.00180000180
.........................................................................................................AGGGAACTGCTGCTGCTGATA.................................................................................................................................2118.008010070
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..........................................................2137.33220000220
droVir3
GTGAAAAT---TGA--ATAAATATTTG-------------------C-----TGACA-----------------AA-TTTCTTATGT-GCTATGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATA--G--A----------------TTATAT--CG--ATTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAACAATTTGTCAGCC---GAAAGTACTT---TTATTATTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
.........................................................................................................AGGGAACTGCTGCTGCTGATATA...............................................................................................................................2311766.00176600025000000011013000000000000000010580227318737200009261810000001000000300000022333100000002197510158101
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC........................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................232359.007180001670000000000000000000000000000000000000011511152472715352218151200039000000151398200000664232819
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.......................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
.........................................................................................................AGGGAACTGCTGCTGCTGATAT................................................................................................................................22192.009200010000000000000000000000000000001112600000641112000001000000000001210000001251033
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.........................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
................................................................................................................................CTGTATA--G--A----------------TTATAT--CG--ATTCCA................................................................................23126.002600000000000000000000000000000000601514000000000000000000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG........................................................22111.00110002000000000000000000000000000000000000000001011000001000000000000100000020110
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC........................................................2429.501900018000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA........................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..........................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT.......................................................2317.0070002000000000000000000000000000000000000000000000010000000000000001100000010100
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA........................................................2426.50130002000000000000000000000000000000000000000000001000000000000000002400000003010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC........................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
.........................................................................................................AGGGAACTGCTGCTGCTGATATAA..............................................................................................................................2416.0060000000000000000000000000000000020000100000000000000000000000000000000000001200
...............................................................................................................................................................................TATCACAGTGGCTGTTC...............................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................2225.50110006000000000000000000000000000000000000000000010000000000000000000300000010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.........................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
................................................................................CTTATGT-GCTATGT--TTAACCGC......................................................................................................................................................2215.0050000000000000000000000000000000010010200000100000000000000000000000000000000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
.........................................................................................................AGGGAACTGCTGCTGCTGATA.................................................................................................................................2115.0050000000000000000000000000000000000010100000000001000000000000000000100000000100
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA........................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC........................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
.........................................................................................................AGGGAACTGCTGCTGCTGATATACTGTATG--......................................................................................................................3013.0030000000000000000000000000000000000000000000120000000000000000000000000000000000
.........................................................................................................AGGGAACTGCTGCTGC......................................................................................................................................1613.0030000000000000000000000000000000000000000000210000000000000000000000000000000000
.........................................................................................................AGGGAACTGCTGCTGCTGAT..................................................................................................................................2013.0030000000000000000000000000000000000000000000000010010000000000000000000000000100
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
...............................................................................TCTTATGT-GCTATGT--TTAACCGC......................................................................................................................................................2313.0030000000000000000000000000000000000000200001000000000000000000000000000000000000
..............................................................................TTCTTATGT-GCTATGT--TTAACCGC......................................................................................................................................................2413.0030000000000000000000000000000000010011000000000000000000000000000000000000000000
.................................................................................TTATGT-GCTATGT--TTAACCGC......................................................................................................................................................2113.0030000000000000000000000000000000000000200000100000000000000000000000000000000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.........................................................2233.0090008000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG........................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000010010
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGC.......................................................2312.0020001000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................GCAGGGAACTGCTGCTGCTGATA.................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000001001
........................................................................................................CAGGGAACTGCTGCTGCTGATATA...............................................................................................................................2412.0020000000000000000000000000000000000000100000000000000000000000000000000000010000
.........................................................................................................AGGGAACTGCTGCTGCTGA...................................................................................................................................1912.0020000000000000000000000000000000000000000000010000000000000000000000100000000000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................1932.0060013000000000000000000000000000000000000000100000000000000000000000000000000001
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAC.........................................................2332.0060001000000000000000000000000000000000000000000100020010000100000000000000000000
.........................................................................................................AGGGAACTGCTGCTGCTGATATT...............................................................................................................................2312.0020000000000000000000000000000000010000000000001000000000000000000000000000000000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................2231.6750000000000000000000000000000000000000000000000010030000000000000000000000000010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTACC.......................................................2531.6750000000000000000000000000000000000000000000000000001100000300000000000000000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC........................................................2221.5030002000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.........................................................2121.5030001000000000000000000000000000000000000000000000000000000200000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTAC..........................................................2231.3340002000000000000000000000000000000000000000000001000000000000000000100000000000
droGri2
GTACAACAAAATGA--GTA-ATG----TTAT-------CAACCGCT-------GC-A-----------------TAAATTCACCAAT-GCTATGT--TTAACCACAGGGAACTGCTGCTGCTGATATACAACC-----ATAT---------------TTA-TACA----CGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAACGATTTGTCAGTGTTTTA----TTCT---ATT---TTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................2262.5015105
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2161.831129
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................2060.33202
droWil2
CAA-----------------------------------------------------AAATATTATTTAGTGAAGTG-TTTTTTAAAG-TTTTTGT--TTAACCGCAGGGAACTGTCGCTGCTGATATATA-T----ATATTATTGTTATATATAAT-TTA-AAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAACAACTTTATTTTTA--GA-TTTCTCTGTTTTACCGTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22335155.671054670180701036555
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2138217.002465103441243042
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................2031168.673506059534411
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................2331099.333298010032880
.........................................................................................................AGGGAACTGTCGCTGCTGATATA...............................................................................................................................231333.003330213300
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................193320.009600609504
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................243217.006510506460
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................223189.675690405650
.........................................................................................................AGGGAACTGTCGCTGCTGATAT................................................................................................................................221136.001360101350
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................183128.333850303820
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................23283.501670601610
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21370.3321101430680
.........................................................................................................AGGGAACTGTCGCTGCTGATA.................................................................................................................................21162.0062010610
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA.......................................................25346.001380001380
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................18345.001350101340
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.........................................................23341.671250001250
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................22340.331210101200
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................23332.3397000970
.........................................................................................................AGGGAACTGTCGCTGCTGAT..................................................................................................................................20119.0019000190
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................22318.6756000560
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................20316.00480310170
.........................................................................................................AGGGAACTGTCGCTGCTGATATAA..............................................................................................................................24111.0011000110
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................20310.33310120190
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...........................................................2139.3328010270
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................2238.6726000260
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA........................................................2437.3322000220
.....................................................................................................................................................................TGATTTTCTATATCACAGTGGC....................................................................2217.00700070
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................1936.0018000180
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTT............................................................2134.6714000140
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................2134.3313000130
..........................................................................................................GGGAACTGTCGCTGCTGATATA...............................................................................................................................2214.00400040
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC........................................................2433.6711000110
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA........................................................2423.50700070
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..........................................................2243.2513000130
.........................................................................................................AGGGAACTGTCGCTGCTGATATT...............................................................................................................................2313.00300030
................................................................................................................................................................................ATCACAGTGGCTGTTCTTT............................................................1932.67807010
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTTA.........................................................1932.67800080
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................2222.50500050
.........................................................................................................AGGGAACTGTCGCTGCTGATATAT..............................................................................................................................2412.00200020
.........................................................................................................AGGGAACTGTCGCTGCTGATATC...............................................................................................................................2312.00200020
....................................................................................AAG-TTTTTGT--TTAACCGC......................................................................................................................................................1812.00200020
.............................................................................................................AACTGTCGCTGCTGATATA...............................................................................................................................1912.00200020
.........................................................................................................AGGGAACTGTCGCTGCTGA...................................................................................................................................1912.00200020
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...........................................................1932.00600060
..................................................................................................................................................................................CACAGTGGCTGTTCTTTT...........................................................1831.67500050
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA........................................................2231.33400040
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTT.............................................................2031.33400040
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..........................................................2331.33402020
.........................................................................................................AGGGAACTGTCGCTGCTGATATG...............................................................................................................................2311.00100010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................2131.00300030
..........................................................................................................GGGAACTGTCGCTGCTGAT..................................................................................................................................1911.00100010
....................................................................................................................................................................ATGATTTTCTATATCACAGTGGT....................................................................2311.00100010
.....................................................................................................................................................................TGATTTTCTATATCACAGTGGT....................................................................2211.00100010
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.........................................................2121.00200020
..........................................................................................................GGGAACTGTCGCTGCTGATAT................................................................................................................................2111.00101000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTTGGT.......................................................2211.00100010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC.......................................................2531.00300030
..........................................................................................................................................................................TTCTATATCACAGTGGCTGTTCT..............................................................2311.00100010
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG........................................................2311.00100010
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT.......................................................2311.00100010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC........................................................2431.00301020
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA.........................................................2330.67200020
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................2030.67200011
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTA.........................................................2130.67200020
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.........................................................2330.67200020
dp5
GAA--TCGCGTTGT--GCA-GTG----CTTC-------CAGTTACT-------GACA-----------------AA-TCCCC---GT-GCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCT--------------T---TGACA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCG-----------CC---GCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22338201.331146040681510770178307000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2136091.0018273012371700029205000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................2231760.0052800452724000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................203403.001209013410741000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................232249.004980794190000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................213194.005820505770000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................213169.33508025060000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................233159.004770124641000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................233100.003000222770001000
.........................................................................................................AGGGAACCGCTGCTGCTGATATA...............................................................................................................................23180.0080054802700000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................20362.00186001842000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................20340.001200106140000000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................22330.339107840000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................19327.6783024590000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC........................................................24226.505300530000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................22324.677406680000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................20317.0051032190000000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..........................................................23313.674108330000000
.........................................................................................................AGGGAACCGCTGCTGCTGATAT................................................................................................................................22113.001300120100000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC........................................................24310.673206260000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................22310.333109220000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTT............................................................1938.332502230000000
................................................................................................................................TTATCCACCCATCT--------------T---TGACA----TTTCT.................................................................................2518.0080050300000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................2138.002401230000000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................1937.6723010130000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................1837.002108130000000
.........................................................................................................AGGGAACCGCTGCTGCTGATAC................................................................................................................................2216.0060060000000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTT............................................................2135.331600160000000
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................1835.001503120000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA........................................................2424.5090090000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................2434.001202100000000
.........................................................................................................AGGGAACCGCTGCTGCTGATA.................................................................................................................................2114.0040030100000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................2224.0080710000000
.........................................................................................................AGGGAACCGCTGCTGCTGATATC...............................................................................................................................2313.0030010000020
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.........................................................2333.0090180000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.........................................................2332.0060230001000
.............................................................................TCCCC---GT-GCCGTGTCCCCAACCGC......................................................................................................................................................2412.0020020000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..........................................................2132.0060150000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG........................................................2412.0020110000000
.........................................................................................................AGGGAACCGCTGCTGCTGA...................................................................................................................................1912.0020000000020
.........................................................................................................AGGGAACCGCTGCTGCTGAT..................................................................................................................................2012.0020000101000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTC.............................................................1931.6750050000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTT.............................................................1831.6750500000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.........................................................2121.5030120000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..........................................................2231.3340040000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.........................................................2231.3340310000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC.......................................................2531.3340040000000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTC...........................................................2231.0030030000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...........................................................2131.0030030000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGGAA.....................................................2711.0010100000000
...........................................................................A-TCCCC---GT-GCCGTGTCCCCAACCGC......................................................................................................................................................2511.0010010000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGC.......................................................2511.0010010000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC........................................................2221.0020020000000
................................................................................................................................TTATCCACCCATCT--------------T---TGACA----TTTCTA................................................................................2611.0010000100000
.........................................................................................................AGGGAACCGCTGCTGCTGATATTC..............................................................................................................................2411.0010000000010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..........................................................2231.0030020001000
droPer2
GAA--TCGCGTTGT--GCA-GTG----CTTC-------CAGTTACT-------CACA-----------------AA-TCCCC---GT-GCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCT--------------T---TGACA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTC----------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................223146.00438941300115
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................21325.00758620005
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21314.67440440000
.........................................................................................................AGGGAACCGCTGCTGCTGATAT................................................................................................................................22112.00121002000
.........................................................................................................AGGGAACCGCTGCTGCTGATATA...............................................................................................................................2318.008404000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................2325.0010070003
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................2035.0015680001
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................2033.009090000
.........................................................................................................AGGGAACCGCTGCTGCTGATATAA..............................................................................................................................2411.001100000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................2221.002020000
.........................................................................................................AGGGAACCGCTGCTGCTGATA.................................................................................................................................2111.001001000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................1931.003030000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................2030.672020000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGA........................................................2220.501010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................2230.331010000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................1930.331010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................2330.331010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................2230.331010000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...........................................................1930.331010000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................2230.331010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................2030.331100000
droAna3
GTGATTTT----------------TCG------TTATC--------CGA---CGACA-----------------AA-TAT-T---AT-TCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAA--------------A---AAAAA---TCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCACCGATTTGTCATTTGTGGCACGCATTT---GTG---TCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22315043.3345130367447520074
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2133049.3391489790392028
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................223462.001386013860000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................203276.00828267920082
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................21357.6717301720001
.........................................................................................................AGGGAACTGTTGCTGCTGATATA...............................................................................................................................23143.00430348001
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................20337.0011101110000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21335.6710740670000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................23334.6710401040000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................23333.671013980000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................19317.33528390023
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................23214.00282240011
.........................................................................................................AGGGAACTGTTGCTGCTGATAT................................................................................................................................22112.0012092100
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................1938.67260260000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................2038.00245190000
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................1836.00180180000
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................1836.00180180000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................2036.00187110000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................2235.33160150001
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................2134.33130130000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................2233.3310190000
................................................................................................................................TTATTCTCCCAAAA--------------A---AAAAA---TCACCTA................................................................................2713.003030000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................2433.009170010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT........................................................2422.505050000
.........................................................................................................AGGGAACTGTTGCTGCTGAT..................................................................................................................................2012.002020000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTT............................................................1932.006330000
.........................................................................................................AGGGAACTGTTGCTGCTGATA.................................................................................................................................2112.002020000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...........................................................1931.675050000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................2231.675050000
................................................................................................................................TTATTCTCCCAAAA--------------A---AAAAA---TCACCT.................................................................................2611.001010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTC.............................................................1931.003030000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..........................................................2131.003030000
........................................................................................................CAGGGAACTGTTGCTGCTGATATA...............................................................................................................................2411.001010000
.........................................................................................................AGGGAACTGTTGCTGCTGATAC................................................................................................................................2211.001010000
..........................................................................AA-TAT-T---AT-TCCGGTG--TTAGCCCC......................................................................................................................................................2311.001010000
.........................................................................................................AGGGAACTGTTGCTGCTGATATT...............................................................................................................................2311.001010000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTT...........................................................1830.672020000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTAC..........................................................2230.672020000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.........................................................2330.672020000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTT............................................................2130.672020000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA........................................................2420.501010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA.........................................................2330.331010000
droBip1
TAT------------------------------------------------------------------------------T---AT-TCCGGTG--TTAACCCCAGGGAACTGTTGCTGCTGATATATTATACTTTC--------------------GA--A--CTATCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAACAATTTGTCATCTGTGGCACGAATTT---GTGGCATCSizeHit CountTotal NormTotal
No Reads
droKik1
TTGGGTTT----------------------ATATTTTC--------TTAGTGTGACA-----------------TT-TCT-T---CT-ACCGTGG--TTAGCCCCAGGGAACTGCTGCTGCTGATATATTATC-------------------------AA--GAA----TTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAGCGATTTGTCATCA---GCGCG----------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGT---------------------TCG----TAT------------C-----TGACA-----------------AA-CATCC---AT-TCCGTTT--TTAACCCTAGGGAACTTCTGCTGCTGATATATTATC-------------------------GA--AAA----CTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAGCGATTTGTCATCTGCGGCACGCATTC---GTG---TCSizeHit CountTotal NormTotal
No Reads
droEle1
TTG------------------------TTTTCATTTTC--------C-----CGACA-----------------AA-TACCC---AT-TCCGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATC-------------------------AA--AAA----CTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAGCGATTTGTCATACAGGGAACGGATTT---GTG---TCSizeHit CountTotal NormTotal
No Reads
droRho1
GT---------------------------------------------------------------------------------------CTGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATC-------------------------GA--AAA----CTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAGCGATTTGTCATCCAGGAAACGCATTT---GTG---TCSizeHit CountTotal NormTotal
No Reads
droBia1
AGT-------------------TCTCC-------------------C-----TGACA-----------------AG-TATCT---AT-TCCGTTC--TCAACCCCAGGGAACTTCTGCTGCTGATATATTAAC-------------------------TA--AAG-------CTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGGCACGCATTT---GTG---TCSizeHit CountTotal NormTotal
No Reads
droTak1
CT---------------------------------------------------GACA-----------------AA-CACCC---AT-TCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA--AAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTGGCATGCATTT---GTG---TCSizeHit CountTotal NormTotal
No Reads
droEug1
TT---------------------------------------------------GACA-----------------AA-CAACC---AT-GCCGTTT--TTAACCCCAGGGAACCTCTGCTGTTGATATATAATC-------------------------AG-GAAA----CTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCATCGATTTGTCATCTGTGGCATGCATTT---GTG---TCSizeHit CountTotal NormTotal
No Reads
dm3
TTT--------------------TTGG-------------------C-----ACACG-----------------AA-TAACC---AT-GCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA-AAAA----CTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCACGCATTT---GTG---TCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
.........................................................................................................AGGGAACTTCTGCTGCTGATATA...............................................................................................................................23114804.00148040000001091822520000000000000000000000020000000000000000000000000000000000000000000010003566735100542204010004004000219110014145435579001801213890020001000000200000000001024967614049100010000000000000000000200000100000000001000000000000100000000000000000022001711900040000421100000000000000010000100000010001000000000000000004567000100200000000010000000010000000010010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
.........................................................................................................AGGGAACTTCTGCTGCTGATAT................................................................................................................................2212093.002093000000841510000000000000000000000008300000000000000000000000000000000000000000000006158915685150100012000001001200002849000484064000000000000000000000000121477130000000000000000000000000000000000000000000000000000000000000000000000000000015041002000020900000000000000000000000000000000000000000000000005151300000000000000000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
.........................................................................................................AGGGAACTTCTGCTGCTGAT..................................................................................................................................201426.0042600000000100000000000000000000000004020000000000000000000000000000000000000000000000000310000000000000000000000000000300000000000000000000000002400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001100000000000000001000000000000000000000000000000005100000000000000000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................232281.005620000003121360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203249014500200000000000000000000000000000000000000010002000000000003298700000000000000001003000030000003690011010
.........................................................................................................AGGGAACTTCTGCTGCTGATATAT..............................................................................................................................241269.00269000000330000000000000000000000000010000000000000000000000000000000000000000000000732541350000000000000007000011900050015000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071000000000000000000000000000000000010000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
.........................................................................................................AGGGAACTTCTGCTGCTGATA.................................................................................................................................211139.00139000000100000000000000000000000000032000000000000000000000000000000000000000000000067955000000000000000000000000040000000000000000000000000000614000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000042500000000000000000000000000000000100000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
........................................................................................................AAGGGAACTTCTGCTGCTGATATA...............................................................................................................................241117.00117000000140000000000000000000000000000000000000000000000000000000000000000000000000472100240000000000000100000083000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
..............................................................................AACC---AT-GCCGTTT--TTAACCCA......................................................................................................................................................211112.00112000000230000000000000000000000000000000000000000000000000000000000000000000000000314303000000000000000000000860005001000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000
.............................................................................TAACC---AT-GCCGTTT--TTAACCCA......................................................................................................................................................221103.0010300000000000000000000000000000000000000000000000000000000000000000000000000000000016180325000000000000000000000200001090000000000000000000000000212300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
..........................................................................................................GGGAACTTCTGCTGCTGATATA...............................................................................................................................22184.0084000000240000000000000000000000000000000000000000000000000000000000000000000000000271100220000000000000001000005000000000100000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATAA..............................................................................................................................24153.00530000000000000000000000000000000000100000000000000000000000000000000000000000000005502400000000000000000000000000007000000000000000000000000014030000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
...............................................................................ACC---AT-GCCGTTT--TTAACCCA......................................................................................................................................................20151.00510000000000000000000000000000000000000000000000000000000000000000000000000000000002700090000010000000000000003000200300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
...........................................................................A-TAACC---AT-GCCGTTT--TTAACCCA......................................................................................................................................................23147.00470000001000000000000000000000000000000000000000000000000000000000000000000000000002543060000000000000000000004000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
........................................................................................................AAGGGAACTTCTGCTGCTGATAT................................................................................................................................23139.00390000000010000000000000000000000000000000000000000000000000000000000000000000000008804500000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATC...............................................................................................................................23138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
.................................................................................C---AT-GCCGTTT--TTAACCCA......................................................................................................................................................18130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000001100020000000000000000010002000200700000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATATT.............................................................................................................................25120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
.........................................................................................................AGGGAACTTCTGCTGCTGA...................................................................................................................................19120.00200000000000000000000000000000000000500000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATG...............................................................................................................................23119.0019000000011100000000000000000000000000000000000000000000000000000000000000000000000111040000000000000000000010000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..........................................................................................................GGGAACTTCTGCTGCTGATAT................................................................................................................................21117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000001401020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...........................................................21316.6750000010515131000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000004000000000000000000000000000000001000000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATT...............................................................................................................................23116.0016000000210000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000002000000100000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
................................................................................CC---AT-GCCGTTT--TTAACCCA......................................................................................................................................................19115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000200160000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000010000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................21313.67410000202427000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000015700000000000000000000000000000000000000000
........................................................................................................AAGGGAACTTCTGCTGCTGATA.................................................................................................................................22112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................22311.673500000001001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010006000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000100000000
droSim2
TTT---------------------TCG-------------------C-----ACACG-----------------AA-TAACC---AT-GCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA-AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCACGCATTT---GTG---TCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................223816.00244800797972722282537553601315000
.........................................................................................................AGGGAACTTCTGCTGCTGATATA...............................................................................................................................231289.002890033000701159703700000
.........................................................................................................AGGGAACTTCTGCTGCTGATAT................................................................................................................................221186.00186003210110864402100000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................213162.6748810811199451247312154104000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................23266.0013200851024018751000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................19361.3318400212713562641000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................20350.671520033123571614952001000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................23350.671520001009061000000000
.........................................................................................................AGGGAACTTCTGCTGCTGATA.................................................................................................................................21149.004900150000116110600000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................24343.331300000007852000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................18339.001170000610514001000000
......................................................................................................................................................................................GTGGCTGTTCTTTTT..........................................................15318.67560000000027281000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21318.3355000550000000000000
...............................................................................................................................................................................TATCACAGTGGCTGT.................................................................15315.00450000000012302010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.........................................................23313.33400000002119000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA........................................................24312.67380000002117000000000
.........................................................................................................AGGGAACTTCTGCTGCTGAT..................................................................................................................................2018.00800100000320200000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................2237.3322000000128101000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATAA..............................................................................................................................2417.00700100000320100000
...............................................................................................................................................................................TATCACAGTGGCTGTT................................................................1632.67800000010052000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................2032.67800053000000000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................2222.50500040001000000000
................................................................................................................................TTATT-------------------------GA-AAAA----CTCCTA................................................................................1712.00200000000020000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATAAA.............................................................................................................................2512.00200000000200000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...........................................................2131.33400000022000000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................2031.33400030010000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA........................................................2421.00200000011000000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATAC..............................................................................................................................2411.00100000000010000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATATTAT...........................................................................................................................2711.00100000000010000000
..............................................................................AACC---AT-GCCGTTT--TTAACCCA......................................................................................................................................................2111.00100000010000000000
.........................................................................................................AGGGAACTTCTGCTGCTGATAA................................................................................................................................2211.00100100000000000000
...........................................................................................................GGAACTTCTGCTGCTGATATA...............................................................................................................................2111.00100000000100000000
......................................................................................................................................................................................GTGGCTGTTCTTTTTG.........................................................1621.00200000000020000000
.........................................................................................................AGGGAACTTCTGCTGCTGATATAT..............................................................................................................................2411.00100100000000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGC.......................................................2511.00100010000000000000
.........................................................................................................AGGGAACTTCTGCTGCTGA...................................................................................................................................1911.00100100000000000000
.........................................................................................................AGGGAACTTCTGCTGCTGG...................................................................................................................................1911.00100100000000000000
........................................................................................................CAGGGAACTTCTGCTGCTGATAT................................................................................................................................2311.00100000000000100000
.........................................................................................................AGGGAACTTCTGCTGCTGATATATT.............................................................................................................................2511.00100000000100000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................2030.67200200000000000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.........................................................2230.67200000002000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................2130.67200020000000000000
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................1830.67200010010000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................2230.67200010010000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTAAA.........................................................2340.50200000011000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC........................................................2420.50100100000000000000
droSec2
TTT-------------------TTTTG-------------------C-----ACACG-----------------AA-TAACC---AT-GCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT-------------------------GA-AAAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCACGCATTT---GTG---TCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22327140.338142117131478922772
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2138065.33241962271023821138
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................2323579.5071591011697978
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................2031417.004251233419035
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................193259.677793075719
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................233126.33379203689
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................183112.00336003342
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21392.0027614701281
.........................................................................................................AGGGAACTTCTGCTGCTGATATA...............................................................................................................................23172.007220700
.........................................................................................................AGGGAACTTCTGCTGCTGATAT................................................................................................................................22171.007120681
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................18367.33202101965
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA........................................................24254.50109101080
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................22332.339720941
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................22329.008710851
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................22222.5045160290
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................20319.6759100481
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTTG.........................................................19216.503300330
.........................................................................................................AGGGAACTTCTGCTGCTGATA.................................................................................................................................21116.001600160
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................24314.004200411
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................20311.3334230110
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................23311.003310320
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................2237.332220200
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG........................................................2417.0071060
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................1936.331920170
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...........................................................1935.331620140
.........................................................................................................AGGGAACTTCTGCTGCTGAT..................................................................................................................................2015.0050050
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC........................................................2425.001000100
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...........................................................2134.331300130
..............................................................................AACC---AT-GCCGTTT--TTAACCCC......................................................................................................................................................2114.0040040
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................2133.671100110
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.........................................................2333.331000100
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG........................................................2313.0030030
..................................................................................................................................................................................CACAGTGGCTGTTCTTTT...........................................................1832.3371060
................................................................................................................................................................................ATCACAGTGGCTGTTCTTT............................................................1932.3375020
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................2132.0062040
...........................................................................A-TAACC---AT-GCCGTTT--TTAACCCC......................................................................................................................................................2312.0020020
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................2231.0030030
.........................................................................................................AGGGAACTTCTGCTGCTGATATATT.............................................................................................................................2511.0010010
.........................................................................................................AGGGAACTTCTGCTGCTGATATAT..............................................................................................................................2411.0010010
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTTG.........................................................2021.0021010
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.........................................................2231.0030030
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGGT.......................................................2411.0010010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTA............................................................2031.0030030
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................2031.0030021
.........................................................................................................AGGGAACTTCTGCTGCTGATATAG..............................................................................................................................2411.0010010
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.........................................................2121.0021010
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..........................................................2230.6720020
droYak3
TTGTT--GCTTT----------TTTTG-------------------C-----TCACA-----------------AG-TAACC---AT-ACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATT-------------------------GA-GAAA----CTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTGGCCCGCATTT---TTG---TCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22388528.672655860234265335500120000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................21315870.00476100634753810080000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................2232566.67770000770000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................2031006.673020015300310010000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................213276.008280082800000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................232209.004180241600000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................233165.004950149400000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................203138.334150041500000000
.........................................................................................................AGGGAACCTCTGCTGCTGATATA...............................................................................................................................231120.001200077430000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................21392.002760926700000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................23390.332710226900000000
.........................................................................................................AGGGAACCTCTGCTGCTGATAT................................................................................................................................22171.00710052180100000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................19362.001860218400000000
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................18347.001410114000000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................22331.3394009400000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................20322.3367006700000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC........................................................24221.5043004300000000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................19321.0063016200000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................21316.6750005000000000
.........................................................................................................AGGGAACCTCTGCTGCTGATA.................................................................................................................................21113.001300940000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................20312.6738023600000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................1837.3322012100000000
.........................................................................................................AGGGAACCTCTGCTGCTGATAC................................................................................................................................2217.00700700000000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................2235.6717001700000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................2235.6717001700000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..........................................................2134.6714001400000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................2224.50900900000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG........................................................2214.00400400000000
...............................................................................ACC---AT-ACCGTTT--TTAACCGC......................................................................................................................................................2014.00400310000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTGC..........................................................2233.00900900000000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTT...........................................................1832.67800800000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTC.............................................................1932.67800800000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...........................................................1932.33701600000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTT......................................................2412.00200200000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...........................................................2132.00600600000000
.........................................................................................................AGGGAACCTCTGCTGCTGAT..................................................................................................................................2012.00200110000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT.......................................................2312.00200200000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG........................................................2312.00200200000000
................................................................................CC---AT-ACCGTTT--TTAACCGC......................................................................................................................................................1912.00200200000000
droEre2
TGG-------------------------------------------T-----GCACG-----------------AA-AACCC---AT-ACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATT-------------------------GA--AAA----CTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAGCGATTTGTCATTTGTGGCACGCATTT---GTG---TCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..........................................................22310965.6732897490027970056160
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...........................................................2132527.677583713686301510
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..........................................................223198.00594958500000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTT............................................................203195.675877550501240
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..........................................................213131.673953702500000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.........................................................232114.002284518200100
.........................................................................................................AGGGAACCTCTGCTGCTGATATA...............................................................................................................................23144.00442011013000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...........................................................21326.007817700000
.........................................................................................................AGGGAACCTCTGCTGCTGATAT................................................................................................................................22125.00257909000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.........................................................23319.005715600000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.........................................................23318.6756163800020
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...........................................................20317.3352411100000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTC............................................................20316.334904801000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTT.............................................................19314.3343103001110
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..........................................................20310.673223900000
.........................................................................................................AGGGAACCTCTGCTGCTGATA.................................................................................................................................2118.0081205000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC........................................................2425.501101100000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..........................................................2235.331661000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG........................................................2413.0033000000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.........................................................2222.5052300000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...........................................................2132.3374300000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTT............................................................1932.0066000000
...............................................................................CCC---AT-ACCGTTT--TTAACCCC......................................................................................................................................................2012.0020200000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..........................................................1932.0061500000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG........................................................2212.0020200000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGCA......................................................2612.0021100000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC........................................................2431.6750500000
...................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..........................................................1831.3340400000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...........................................................2231.3341300000
..............................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..........................................................2331.3342200000
.........................................................................................................AGGGAACCTCTGCTGCTGATAC................................................................................................................................2211.0010100000
...........................................................................................................GGAACCTCTGCTGCTGATATT...............................................................................................................................2111.0010100000
.........................................................................................................AGGGAACCTCTGCTGCTGAT..................................................................................................................................2011.0010001000
..........................................................................................................GGGAACCTCTGCTGCTGATATA...............................................................................................................................2211.0011000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..........................................................2231.0030300000
...............................................................................................................................................................................TATCACAGTGGCTGTTCT..............................................................1831.0032100000
..........................................................................................................GGGAACCTCTGCTGCTGATAT................................................................................................................................2111.0011000000
........................................................................................................CAGGGAACCTCTGCTGCTGATAT................................................................................................................................2311.0011000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...........................................................2131.0030300000
..................................................................................................................................................................................CACAGTGGCTGTTCTTTT...........................................................1830.6720200000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA........................................................2430.6722000000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..........................................................2230.6722000000
.................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...........................................................1930.6720200000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTACC.........................................................2330.6720200000
...............................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.........................................................2330.6720200000
................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTG..........................................................2130.6722000000

Generated: 10/20/2015 at 06:59 PM