ID:

dmo-mir-6-1

 Coordinate:

scaffold_6496:20936315-20936380 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.7 -27.7 -27.5

Flybase annnotation

pre_miRNA [Dmoj\mir-6-1-RM]; miRNA [Dmoj\miR-6-1-RA]

No Repeatable elements found

mature

  1. dmo-mir-6-3  scaffold_6496:20935964-20935985 -
  2. dmo-mir-6-2  scaffold_6496:20936142-20936163 -
  3. dmo-mir-6-1  scaffold_6496:20936318-20936339 -
star

Sense Strand Reads

TATTTATAAGTGTATATATATTTATTTCTCTAGTGTTTTTTCGCCTTTAAAGTAGAGAGAATAGATGCTGTGAGTATATCTGTTGCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGCCAGACAGCATTATTTTTCGCCAATTGCCAAATATAAAGTG

****************************************..(((((((...((((((((((((..(((((((.((((..((...))..)))))))))))..))))))))))))....)))).)))..************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V110

male body
...........................................................................................TATCACAGTGGCTGTTCTTTTT..................................................... 22 0 3 175659.67 526979 526946 1 30 2
...........................................................................................TATCACAGTGGCTGTTCTTTT...................................................... 21 0 3 71420.67 214262 214242 1 14 5
...........................................................................................TGTCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 12004.33 36013 36013 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTC.................................................... 23 1 3 9565.33 28696 28690 0 6 0
...........................................................................................TGTCACAGTGGCTGTTCTTTT...................................................... 21 1 3 5603.33 16810 16810 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTT....................................................... 20 0 3 5461.67 16385 16380 0 3 2
...........................................................................................TATTACAGTGGCTGTTCTTTTT..................................................... 22 1 3 5223.00 15669 15669 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTC..................................................... 22 1 3 4979.00 14937 14936 0 1 0
...........................................................................................TACCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 3858.67 11576 11576 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTT...................................................... 21 1 3 2029.67 6089 6089 0 0 0
...........................................................................................TTTCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 1942.67 5828 5828 0 0 0
.......................................................AGAGAATAGATGCTGTGAGTAT......................................................................................... 22 0 1 1583.00 1583 1226 355 1 1
...........................................................................................TACCACAGTGGCTGTTCTTTT...................................................... 21 1 3 1549.33 4648 4648 0 0 0
...........................................................................................TATCACAGCGGCTGTTCTTTTT..................................................... 22 1 3 1273.67 3821 3821 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTC...................................................... 21 1 3 1153.67 3461 3461 0 0 0
...........................................................................................TTTCACAGTGGCTGTTCTTTT...................................................... 21 1 3 819.67 2459 2459 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTCC................................................... 24 2 3 749.33 2248 2248 0 0 0
...........................................................................................TATCACAGTGGCTTTTCTTTTT..................................................... 22 1 3 722.00 2166 2166 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTTTC.................................................... 23 2 3 678.00 2034 2034 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTG.................................................... 23 0 2 623.50 1247 1244 0 1 2
...........................................................................................TATCACAGTGGCTGTTCTTC....................................................... 20 1 3 612.00 1836 1836 0 0 0
...........................................................................................CATCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 598.33 1795 1795 0 0 0
...........................................................................................GATCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 593.00 1779 1779 0 0 0
...........................................................................................TATCACAGCGGCTGTTCTTTT...................................................... 21 1 3 488.33 1465 1465 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTT....................................................... 20 1 3 451.33 1354 1354 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTTC..................................................... 22 2 3 395.00 1185 1185 0 0 0
............................................................................................ATCACAGTGGCTGTTCTTTTT..................................................... 21 0 3 393.67 1181 1179 0 2 0
...........................................................................................AATCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 373.67 1121 1121 0 0 0
...........................................................................................TATCTCAGTGGCTGTTCTTTTT..................................................... 22 1 3 370.67 1112 1112 0 0 0
.......................................................ATAGAATAGATGCTGTGAGTAT......................................................................................... 22 1 1 357.00 357 357 0 0 0
...........................................................................................TATCACAGTTGCTGTTCTTTTT..................................................... 22 1 3 349.33 1048 1047 1 0 0
..........................................................................................CTATCACAGTGGCTGTTCTTTTT..................................................... 23 1 3 348.33 1045 1045 0 0 0
...........................................................................................TATCACAGTGGCTGCTCTTTTT..................................................... 22 1 3 286.67 860 854 6 0 0
...........................................................................................TATCACAGTGGCTGTTCTT........................................................ 19 0 3 276.67 830 828 1 0 1
...........................................................................................TGTTACAGTGGCTGTTCTTTTT..................................................... 22 2 3 271.67 815 815 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTTTC.................................................... 23 2 3 271.67 815 815 0 0 0
...........................................................................................TATCACATTGGCTGTTCTTTTT..................................................... 22 1 3 251.33 754 754 0 0 0
...........................................................................................CATCACAGTGGCTGTTCTTTT...................................................... 21 1 3 248.00 744 744 0 0 0
...........................................................................................TATCACACTGGCTGTTCTTTTT..................................................... 22 1 3 243.67 731 731 0 0 0
...........................................................................................GATCACAGTGGCTGTTCTTTT...................................................... 21 1 3 239.33 718 718 0 0 0
...........................................................................................TATCACAGTGGCTTTCTTTTT...................................................... 21 3 10 238.00 2380 2380 0 0 0
...........................................................................................TATCACAGTCGCTGTTCTTTTT..................................................... 22 1 3 237.67 713 711 2 0 0
...........................................................................................TATCACAGTGGCTTTTCTTTT...................................................... 21 1 3 233.33 700 700 0 0 0
...........................................................................................TATCACAGAGGCTGTTCTTTTT..................................................... 22 1 3 232.00 696 696 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTA.................................................... 23 1 3 230.33 691 691 0 0 0
...........................................................................................TATCACAGGGGCTGTTCTTTTT..................................................... 22 1 3 218.33 655 655 0 0 0
...........................................................................................TACCACAGTGGCTGTTCTTTTTC.................................................... 23 2 3 213.00 639 639 0 0 0
...........................................................................................TATCACAGTGGATGTTCTTTTT..................................................... 22 1 3 212.00 636 636 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTGT................................................... 24 0 1 191.00 191 191 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTTT................................................... 24 1 2 181.50 363 361 0 2 0
...........................................................................................TATCACAGTGGCTGTCCTTTTT..................................................... 22 1 3 166.67 500 500 0 0 0
...........................................................................................TATCACAGTGGCTGTTCCTTTT..................................................... 22 1 3 165.67 497 497 0 0 0
.......................................................AGAGAATAGATGCTGTGAGTATA........................................................................................ 23 0 1 164.00 164 152 12 0 0
...........................................................................................TATCTCAGTGGCTGTTCTTTT...................................................... 21 1 3 162.67 488 488 0 0 0
...........................................................................................TATCACAGTAGCTGTTCTTTTT..................................................... 22 1 3 153.00 459 437 22 0 0
...........................................................................................AATCACAGTGGCTGTTCTTTT...................................................... 21 1 3 148.67 446 446 0 0 0
.......................................................AGAGAATAGATGCTGTGAGTAC......................................................................................... 22 1 1 147.00 147 145 2 0 0
...........................................................................................TATCACGGTGGCTGTTCTTTTT..................................................... 22 1 3 146.33 439 435 4 0 0
...........................................................................................TATCACAGTTGCTGTTCTTTT...................................................... 21 1 3 146.00 438 438 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTTC..................................................... 22 2 3 144.67 434 434 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTT....................................................... 20 1 3 144.00 432 432 0 0 0
...........................................................................................TATCACAGTGGCTGCTCTTTT...................................................... 21 1 3 143.67 431 423 8 0 0
..........................................................................................CTATCACAGTGGCTGTTCTTTT...................................................... 22 1 3 142.33 427 427 0 0 0
...........................................................................................TATCACAGTGACTGTTCTTTTT..................................................... 22 1 3 139.00 417 400 17 0 0
...........................................................................................TATCACAGTGGCTGATCTTTTT..................................................... 22 1 3 138.33 415 414 1 0 0
............................................................................................ATCACAGTGGCTGTTCTTTT...................................................... 20 0 3 132.33 397 396 0 1 0
...........................................................................................TATCACAGTGGCTGTTTTTTTT..................................................... 22 1 3 129.67 389 389 0 0 0
.......................................................AGAGAATAGATGCTGTGAGTA.......................................................................................... 21 0 1 126.00 126 122 4 0 0
...........................................................................................TGTTACAGTGGCTGTTCTTTT...................................................... 21 2 3 125.67 377 377 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTGT..................................................... 22 1 3 125.67 377 377 0 0 0
...........................................................................................TACCACAGTGGCTGTTCTTTTC..................................................... 22 2 3 123.00 369 369 0 0 0
...........................................................................................TACCACAGTGGCTGTTCTTT....................................................... 20 1 3 118.33 355 355 0 0 0
...........................................................................................TATCACATTGGCTGTTCTTTT...................................................... 21 1 3 116.67 350 350 0 0 0
...........................................................................................TATCACAGTGGCTGTGCTTTTT..................................................... 22 1 3 113.67 341 341 0 0 0
...........................................................................................TTTCACAGTGGCTGTTCTTTTTC.................................................... 23 2 3 110.33 331 331 0 0 0
...........................................................................................TATCACACTGGCTGTTCTTTT...................................................... 21 1 3 110.33 331 331 0 0 0
...........................................................................................TATCGCAGTGGCTGTTCTTTTT..................................................... 22 1 3 108.67 326 326 0 0 0
...........................................................................................TATCAGAGTGGCTGTTCTTTTT..................................................... 22 1 3 105.33 316 316 0 0 0
...........................................................................................TATCATAGTGGCTGTTCTTTTT..................................................... 22 1 3 104.00 312 312 0 0 0
...........................................................................................TATCACAGTGCCTGTTCTTTTT..................................................... 22 1 3 101.00 303 303 0 0 0
...........................................................................................TATCACAGTGGATGTTCTTTT...................................................... 21 1 3 100.00 300 300 0 0 0
...........................................................................................TATCACAGTCGCTGTTCTTTT...................................................... 21 1 3 98.67 296 296 0 0 0
............................................................................................ATCACAGTGGCTGTTCTTTTTG.................................................... 22 0 2 95.50 191 191 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTA..................................................... 22 1 3 89.67 269 269 0 0 0
.............................................................................................TCACAGTGGCTGTTCTTTTT..................................................... 20 0 3 89.67 269 269 0 0 0
...........................................................................................TATCACAGAGGCTGTTCTTTT...................................................... 21 1 3 88.00 264 264 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTC...................................................... 21 2 3 88.00 264 264 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTCTT..................................................... 22 1 3 86.67 260 260 0 0 0
...........................................................................................TATCACAGGGGCTGTTCTTTT...................................................... 21 1 3 83.33 250 250 0 0 0
...........................................................................................TATCACAGTGGCTGTTCCTTT...................................................... 21 1 3 78.67 236 236 0 0 0
...........................................................................................TATCACAGTGGCCGTTCTTTTT..................................................... 22 1 3 78.00 234 232 2 0 0
...........................................................................................TATCACAATGGCTGTTCTTTTT..................................................... 22 1 3 75.00 225 225 0 0 0
...........................................................................................TATCACAGTGGCTGATCTTTT...................................................... 21 1 3 74.67 224 224 0 0 0
...........................................................................................TATCACAGTGGCTGTCCTTTT...................................................... 21 1 3 74.00 222 222 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTCTTT..................................................... 22 1 3 73.67 221 221 0 0 0
...........................................................................................TATCACAGTGTCTGTTCTTTTT..................................................... 22 1 3 70.33 211 211 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTCC.................................................... 23 2 3 68.67 206 206 0 0 0
...........................................................................................TTTCACAGTGGCTGTTCTTT....................................................... 20 1 3 68.33 205 205 0 0 0
...........................................................................................TATCACAGTAGCTGTTCTTTT...................................................... 21 1 3 65.67 197 185 12 0 0
..............................................................................................CACAGTGGCTGTTCTTTTT..................................................... 19 0 3 65.33 196 196 0 0 0
...........................................................................................TATTACAGCGGCTGTTCTTTTT..................................................... 22 2 3 64.00 192 192 0 0 0
...........................................................................................TATCACAGTGGCTGTTGTTTTT..................................................... 22 1 3 64.00 192 191 1 0 0
...........................................................................................TATCACGGTGGCTGTTCTTTT...................................................... 21 1 3 63.67 191 185 6 0 0
...........................................................................................TGTCACAGCGGCTGTTCTTTTT..................................................... 22 2 3 63.00 189 189 0 0 0
...........................................................................................TATCACAGCGGCTGTTCTTTTTC.................................................... 23 2 3 60.67 182 182 0 0 0
............................................................................................AGCACAGTGGCTGTTCTTTTT..................................................... 21 1 3 60.00 180 180 0 0 0
...........................................................................................TATCACAGTGACTGTTCTTTT...................................................... 21 1 3 59.67 179 171 8 0 0
..........................................................................................CGATCACAGTGGCTGTTCTTTTT..................................................... 23 2 3 59.33 178 178 0 0 0
...........................................................................................TTTTACAGTGGCTGTTCTTTTT..................................................... 22 2 3 57.00 171 171 0 0 0
...........................................................................................TATCACAGTGGCTATTCTTTTT..................................................... 22 1 3 56.67 170 169 1 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTCCC.................................................. 25 3 3 53.67 161 161 0 0 0
...........................................................................................TATCACAGTGGCTGTTCGTTTT..................................................... 22 1 3 53.33 160 160 0 0 0
...........................................................................................TATCGCAGTGGCTGTTCTTTT...................................................... 21 1 3 53.00 159 159 0 0 0
...........................................................................................TATCACAGTGGCTGGTCTTTTT..................................................... 22 1 3 50.33 151 139 11 0 1
...........................................................................................TTTCACAGTGGCTGTTCTTTTC..................................................... 22 2 3 49.67 149 149 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTTTG.................................................... 23 1 2 49.50 99 99 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTGTT..................................................... 22 1 3 49.00 147 147 0 0 0
.......................................................ATAGAATAGATGCTGTGAGTATA........................................................................................ 23 1 1 49.00 49 49 0 0 0
...............................................................................................ACAGTGGCTGTTCTTTTT..................................................... 18 0 3 47.67 143 143 0 0 0
...........................................................................................TACCACAGCGGCTGTTCTTTTT..................................................... 22 2 3 47.67 143 143 0 0 0
...........................................................................................TGTCACAGTGGCTTTTCTTTTT..................................................... 22 2 3 47.00 141 141 0 0 0
...........................................................................................TATCACAGTGCCTGTTCTTTT...................................................... 21 1 3 47.00 141 140 1 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTG...................................................... 21 1 3 46.67 140 140 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTC....................................................... 20 2 3 46.33 139 139 0 0 0
...........................................................................................TATCACAGTGGTTGTTCTTTTT..................................................... 22 1 3 46.00 138 134 4 0 0
...........................................................................................TGCCACAGTGGCTGTTCTTTTT..................................................... 22 2 3 45.67 137 137 0 0 0
...........................................................................................TACTACAGTGGCTGTTCTTTTT..................................................... 22 2 3 45.67 137 137 0 0 0
...........................................................................................TATCACAGTGGCTGTGCTTTT...................................................... 21 1 3 45.00 135 135 0 0 0
...........................................................................................TATCATAGTGGCTGTTCTTTT...................................................... 21 1 3 44.67 134 134 0 0 0
...........................................................................................TATCACAGTGGGTGTTCTTTTT..................................................... 22 1 3 44.00 132 131 1 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTTTCC................................................... 24 3 3 43.67 131 131 0 0 0
.......................................................ATAGAATAGATGCTGTGAGTAC......................................................................................... 22 2 1 43.00 43 43 0 0 0
...........................................................................................TATCAGAGTGGCTGTTCTTTT...................................................... 21 1 3 41.33 124 124 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTCT...................................................... 21 1 3 41.00 123 123 0 0 0
...........................................................................................TAACACAGTGGCTGTTCTTTTT..................................................... 22 1 3 40.67 122 122 0 0 0
...........................................................................................TATCACAGTGGCCGTTCTTTT...................................................... 21 1 3 39.33 118 118 0 0 0
...........................................................................................TATCACAGTGGCTGTTTTTTT...................................................... 21 1 3 38.33 115 115 0 0 0
...........................................................................................TGTCTCAGTGGCTGTTCTTTTT..................................................... 22 2 3 38.00 114 114 0 0 0
...........................................................................................TATCACAGTGGCTTTTCTTTTTC.................................................... 23 2 3 37.67 113 113 0 0 0
...........................................................................................TATCACAGTGGCTGTACTTTTT..................................................... 22 1 3 36.33 109 109 0 0 0
...........................................................................................TATCACAGCGGCTGTTCTTT....................................................... 20 1 3 36.33 109 109 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTCCCC................................................. 26 3 1 36.00 36 36 0 0 0
.......................................................AGAGAATAGATGCTGTGAGT........................................................................................... 20 0 1 36.00 36 32 4 0 0
...........................................................................................TATCACAGTGTCTGTTCTTTT...................................................... 21 1 3 34.67 104 104 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTGC................................................... 24 1 2 34.50 69 69 0 0 0
...........................................................................................TATCACAGTGGCAGTTCTTTTT..................................................... 22 1 3 34.33 103 103 0 0 0
...........................................................................................TATCACAGTGGCTGTTATTTTT..................................................... 22 1 3 34.33 103 103 0 0 0
...........................................................................................CATCACAGTGGCTGTTCTTTTTC.................................................... 23 2 3 34.00 102 102 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTCTT...................................................... 21 1 3 33.33 100 100 0 0 0
.............................................................................................TCACAGTGGCTGTTCTTTTTGT................................................... 22 0 1 33.00 33 33 0 0 0
.......................................................ATAGAATAGATGCTGTGAGTA.......................................................................................... 21 1 1 32.00 32 32 0 0 0
.........................................................................................TCTATCACAGTGGCTGTTCTTTTT..................................................... 24 1 3 31.67 95 95 0 0 0
...........................................................................................TGTCACAGCGGCTGTTCTTTT...................................................... 21 2 3 31.33 94 94 0 0 0
..........................................................................................ATATCACAGTGGCTGTTCTTT....................................................... 21 0 3 31.33 94 94 0 0 0
.............................................................................................TCACAGTGGCTGTTCTTTT...................................................... 19 0 3 31.33 94 94 0 0 0
...........................................................................................TATCACAATGGCTGTTCTTTT...................................................... 21 1 3 30.33 91 91 0 0 0
...........................................................................................TAGCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 30.00 90 90 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTATT..................................................... 22 1 3 29.67 89 89 0 0 0
...........................................................................................TATCACAGTGGCTGGTCTTTT...................................................... 21 1 3 29.00 87 80 7 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTG..................................................... 22 1 3 28.67 86 86 0 0 0
..............................................................................................CACAGTGGCTGTTCTTTT...................................................... 18 0 3 28.33 85 85 0 0 0
...........................................................................................TATCACAGTTGCTGTTCTTTTTC.................................................... 23 2 3 28.00 84 84 0 0 0
...........................................................................................GATCACAGTGGCTGTTCTTTTTC.................................................... 23 2 3 27.67 83 83 0 0 0
...........................................................................................TATCACAGTGGCTCTTCTTTTT..................................................... 22 1 3 27.00 81 80 1 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTCT................................................... 24 1 1 27.00 27 27 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTGTTT..................................................... 22 1 3 26.67 80 80 0 0 0
...........................................................................................TATCACAGTGGCTGTTCT......................................................... 18 0 3 26.33 79 79 0 0 0
...........................................................................................TATCACAGTGGCTTTTCTTTTC..................................................... 22 2 3 26.00 78 78 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTC...................................................... 21 2 3 26.00 78 78 0 0 0
...........................................................................................TATCACAGCGGCTGTTCTTTTC..................................................... 22 2 3 25.33 76 76 0 0 0
...........................................................................................TATCACAGTGGTTGTTCTTTT...................................................... 21 1 3 23.67 71 70 1 0 0
...........................................................................................TATTACAGTGGCTGCTCTTTTT..................................................... 22 2 3 23.33 70 70 0 0 0
...........................................................................................TATCACAGTGGCTGTTGTTTT...................................................... 21 1 3 23.33 70 69 1 0 0
...........................................................................................TATCACAGTGGCTATTCTTTT...................................................... 21 1 3 23.00 69 68 1 0 0
...........................................................................................TATCACAGTGGCTGTTCTTGT...................................................... 21 1 3 22.67 68 68 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTCT..................................................... 22 1 3 22.67 68 68 0 0 0
...........................................................................................TATCTCAGTGGCTGTTCTTTTTC.................................................... 23 2 3 22.67 68 68 0 0 0
...........................................................................................TGTCACATTGGCTGTTCTTTTT..................................................... 22 2 3 22.67 68 68 0 0 0
...........................................................................................TACCACAGTGGCTGTTCTTTC...................................................... 21 2 3 22.33 67 67 0 0 0
...........................................................................................TATTACAGCGGCTGTTCTTTT...................................................... 21 2 3 21.67 65 65 0 0 0
...........................................................................................TTTTACAGTGGCTGTTCTTTT...................................................... 21 2 3 21.33 64 64 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTTTG.................................................... 23 1 2 21.00 42 42 0 0 0
...........................................................................................CATCACAGTGGCTGTTCTTT....................................................... 20 1 3 21.00 63 63 0 0 0
.......................................................ATAGAATAGATGCTGTGAGT........................................................................................... 20 1 1 21.00 21 21 0 0 0
............................................................................................AGCACAGTGGCTGTTCTTTT...................................................... 20 1 3 20.00 60 60 0 0 0
............................................................................................ATAACAGTGGCTGTTCTTTTT..................................................... 21 1 3 20.00 60 60 0 0 0
...........................................................................................TATCACTGTGGCTGTTCTTTTT..................................................... 22 1 3 19.67 59 59 0 0 0
...........................................................................................TATTACAGTGGCTTTTCTTTTT..................................................... 22 2 3 19.33 58 58 0 0 0
...........................................................................................TATCACAGTGGGTGTTCTTTT...................................................... 21 1 3 19.33 58 56 2 0 0
...........................................................................................TGTCACACTGGCTGTTCTTTTT..................................................... 22 2 3 19.33 58 58 0 0 0
..........................................................................................CGATCACAGTGGCTGTTCTTTT...................................................... 22 2 3 19.33 58 58 0 0 0
...........................................................................................TGTCTCAGTGGCTGTTCTTTT...................................................... 21 2 3 19.33 58 58 0 0 0
...........................................................................................TACCACAGTGGCTGTTCTTTTTCC................................................... 24 3 3 19.00 57 57 0 0 0
...........................................................................................TGTCACAGTGGCTTTTCTTTT...................................................... 21 2 4 18.75 75 75 0 0 0
...........................................................................................TATCACAGTCGCTGTTCTTTTTC.................................................... 23 2 3 18.67 56 56 0 0 0
.......................................................................................GATCTATCACAGTGGCTGTTCTTTTT..................................................... 26 3 3 18.67 56 56 0 0 0
...........................................................................................AATCACAGTGGCTGTTCTTTTTC.................................................... 23 2 3 18.67 56 56 0 0 0
...........................................................................................TAACACAGTGGCTGTTCTTTT...................................................... 21 1 3 18.33 55 55 0 0 0
...........................................................................................TATCACAGTGGCTGTTCGTTT...................................................... 21 1 3 18.33 55 55 0 0 0
.......................................................AGCGAATAGATGCTGTGAGTAT......................................................................................... 22 1 1 18.00 18 18 0 0 0
.......................................................AGAGAATAGATGCTGTGAGC........................................................................................... 20 1 1 18.00 18 18 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTGTC.................................................. 25 1 1 18.00 18 18 0 0 0
...........................................................................................TGTCACAGTGGCTGCTCTTTTT..................................................... 22 2 3 17.67 53 53 0 0 0
..........................................................................................CTATCACAGTGGCTGTTCTTTTTC.................................................... 24 2 3 17.67 53 53 0 0 0
............................................................................................ATCTCAGTGGCTGTTCTTTTT..................................................... 21 1 3 17.33 52 52 0 0 0
...........................................................................................TATCACACTGGCTGTTCTTTTTC.................................................... 23 2 3 17.33 52 52 0 0 0
...........................................................................................CATCACAGTGGCTGTTCTTTTC..................................................... 22 2 3 17.33 52 52 0 0 0
...........................................................................................TATCACATTGGCTGTTCTTTTTC.................................................... 23 2 3 17.00 51 51 0 0 0
...........................................................................................TATCACAGTGGCTTTTCTTT....................................................... 20 1 3 17.00 51 51 0 0 0
...........................................................................................GATCACAGTGGCTGTTCTTT....................................................... 20 1 3 17.00 51 51 0 0 0
.......................................................AGAGAATAGATGCTGTGAGTATT........................................................................................ 23 1 1 17.00 17 13 4 0 0
...........................................................................................TATCACAGTGGCTGTTCTGTT...................................................... 21 1 3 16.33 49 49 0 0 0
...........................................................................................TACTACAGTGGCTGTTCTTTT...................................................... 21 2 3 16.33 49 49 0 0 0
............................................................................................ATCACAGTGGCTGTTCTTTTTC.................................................... 22 1 3 16.00 48 48 0 0 0
.......................................................AGATAATAGATGCTGTGAGTAT......................................................................................... 22 1 1 16.00 16 16 0 0 0
...........................................................................................TACCACAGCGGCTGTTCTTTT...................................................... 21 2 3 15.67 47 47 0 0 0
...........................................................................................GATCACAGTGGCTGTTCTTTTC..................................................... 22 2 3 15.67 47 47 0 0 0
...........................................................................................TATCTCAGTGGCTGTTCTTT....................................................... 20 1 3 15.67 47 47 0 0 0
...........................................................................................TATCACAGTGGCTGTTCATTTT..................................................... 22 1 3 15.33 46 46 0 0 0
...........................................................................................TATCACAACGGCTGTTCTTTTT..................................................... 22 2 3 15.33 46 46 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTTTCC................................................... 24 3 4 15.25 61 61 0 0 0
...........................................................................................TATCACAGTGGCTGTACTTTT...................................................... 21 1 3 15.00 45 45 0 0 0
...........................................................................................TATCACAGTGGCTCTTCTTTT...................................................... 21 1 3 14.67 44 43 1 0 0
...........................................................................................TATCACAGTGGCTGTTCTC........................................................ 19 1 3 14.67 44 44 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTT........................................................ 19 1 3 14.00 42 42 0 0 0
............................................................................................AGCACAGTGGCTGTTCTTTTTG.................................................... 22 1 2 14.00 28 28 0 0 0
...........................................................................................TATCACAGTGGCAGTTCTTTT...................................................... 21 1 3 14.00 42 42 0 0 0
...........................................................................................TACCACAGTGGCTGTTCTTC....................................................... 20 2 3 14.00 42 42 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTAT...................................................... 21 1 3 13.67 41 41 0 0 0
...........................................................................................TACCACAGTGGCTTTTCTTTTT..................................................... 22 2 3 13.67 41 41 0 0 0
...........................................................................................TACCACAGTGGCTGTTCTTTTTG.................................................... 23 1 2 13.50 27 27 0 0 0
...........................................................................................TCTCACAGTGGCTGTTCTTTTT..................................................... 22 1 3 13.33 40 40 0 0 0
...........................................................................................TATCACCGTGGCTGTTCTTTTT..................................................... 22 1 3 13.33 40 40 0 0 0
.......................................................................................GATCTATCACAGTGGCTGTTCTTTT...................................................... 25 3 3 13.33 40 40 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTATTT..................................................... 22 1 3 13.00 39 39 0 0 0
.......................................................TGAGAATAGATGCTGTGAGTAT......................................................................................... 22 1 1 13.00 13 13 0 0 0
......................................................CAGAGAATAGATGCTGTGAGTAT......................................................................................... 23 1 1 13.00 13 13 0 0 0
..........................................................................................CTATCACAGTGGCTGTTCTTTTC..................................................... 23 2 3 13.00 39 39 0 0 0
...........................................................................................TTTCACAGCGGCTGTTCTTTTT..................................................... 22 2 3 13.00 39 39 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTTTA.................................................... 23 2 3 12.67 38 38 0 0 0
...........................................................................................TAGCACAGTGGCTGTTCTTTT...................................................... 21 1 3 12.67 38 38 0 0 0
...........................................................................................TGTTACAGTGGCTGTTCTTTTTC.................................................... 23 3 4 12.50 50 50 0 0 0
...........................................................................................TATCACAGTTGCTGTTCTTTTC..................................................... 22 2 3 12.33 37 37 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTC....................................................... 20 2 4 12.25 49 49 0 0 0
...........................................................................................TATCACAGTGGCTTTCTTTTTT..................................................... 22 3 6 12.17 73 73 0 0 0
...........................................................................................TATCACAGTGGCTGTTTTTT....................................................... 20 1 3 12.00 36 36 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCCTTTT..................................................... 22 2 3 12.00 36 36 0 0 0
...........................................................................................TATGACAGTGGCTGTTCTTTTT..................................................... 22 1 3 12.00 36 36 0 0 0
...........................................................................................TATTACAGTCGCTGTTCTTTTT..................................................... 22 2 3 11.67 35 35 0 0 0
...........................................................................................TATCACAGGGGCTGTTCTTTTTC.................................................... 23 2 3 11.67 35 35 0 0 0
...........................................................................................TGCCACAGTGGCTGTTCTTTT...................................................... 21 2 5 11.60 58 58 0 0 0
...........................................................................................TATCACAGTGGATGTTCTTTTTC.................................................... 23 2 3 11.33 34 34 0 0 0
.........................................................................................TCTATCACAGTGGCTGTTCTTTT...................................................... 23 1 3 11.33 34 34 0 0 0
...........................................................................................TATCACAGTGGCTGCTCTTTTC..................................................... 22 2 3 11.33 34 34 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTTTGT................................................... 24 1 1 11.00 11 11 0 0 0
...........................................................................................TATCACAGTGGCTGTCCTTTTTC.................................................... 23 2 3 11.00 33 33 0 0 0
............................................................................................ATCACAGTGGCTGTTCTTT....................................................... 19 0 3 11.00 33 33 0 0 0
...........................................................................................TATCACAGTGGCTGCTCTTTTTC.................................................... 23 2 3 11.00 33 33 0 0 0
........................................................GAGAATAGATGCTGTGAGTAT......................................................................................... 21 0 1 11.00 11 10 1 0 0
...........................................................................................TATCACAGTAGCTGTTCTTTTTC.................................................... 23 2 3 10.67 32 32 0 0 0
...........................................................................................TGTCACAGTGGCTGCTCTTTT...................................................... 21 2 3 10.67 32 32 0 0 0
.............................................................................................TCACAGTGGCTGTTCTTTTTG.................................................... 21 0 2 10.50 21 21 0 0 0
...........................................................................................TATTTCAGTGGCTGTTCTTTTT..................................................... 22 2 3 10.33 31 31 0 0 0
............................................................................................TTCACAGTGGCTGTTCTTTTT..................................................... 21 1 3 10.33 31 31 0 0 0
...........................................................................................AATCACAGTGGCTGTTCTTT....................................................... 20 1 3 10.33 31 31 0 0 0
............................................................................................TACACAGTGGCTGTTCTTTTT..................................................... 21 2 3 10.33 31 31 0 0 0
...........................................................................................TTTCACAGTGGCTGTTCTTTC...................................................... 21 2 4 10.25 41 41 0 0 0
...........................................................................................TATCACGTTGGCTGTTCTTTTT..................................................... 22 2 3 10.00 30 30 0 0 0
...........................................................................................AATCACAGTGGCTGTTCTTTTC..................................................... 22 2 3 10.00 30 30 0 0 0
..........................................................................................ATATCACAGTGGCTGTTCTTTT...................................................... 22 0 3 10.00 30 30 0 0 0
..........................................................................................CTATCACAGTGGCTTTTCTTTTT..................................................... 23 2 3 10.00 30 30 0 0 0
...........................................................................................TATCACAGTGGATGTTCTTT....................................................... 20 1 3 10.00 30 30 0 0 0
...........................................................................................TATTACAGTGGCTGCTCTTTT...................................................... 21 2 3 10.00 30 30 0 0 0
...........................................................................................TATCACAGTGGCTGTTCTTTTTCCCCC................................................ 27 3 1 10.00 10 10 0 0 0
...........................................................................................TGTCACAGTTGCTGTTCTTTTT..................................................... 22 2 4 9.75 39 39 0 0 0
...........................................................................................TGTCACAGTGGCTGTTCTTTGT..................................................... 22 2 3 9.67 29 29 0 0 0
...........................................................................................TATCTCAGTGGCTGTTCTTTTC..................................................... 22 2 3 9.67 29 29 0 0 0
.............................................................................................TATCAGTGGCTGTTCTTTTT..................................................... 20 2 5 9.40 47 47 0 0 0
...........................................................................................TGTCACGGTGGCTGTTCTTTTT..................................................... 22 2 3 9.33 28 28 0 0 0
...........................................................................................TATTACAGTGGCTTTTCTTTT...................................................... 21 2 3 9.33 28 28 0 0 0
........................................................................................ATCTATCACAGTGGCTGTTCTTTTT..................................................... 25 2 3 9.33 28 28 0 0 0
..............................................................................................CACAGTGGCTGTTCTTTTTC.................................................... 20 1 3 9.33 28 28 0 0 0
...........................................................................................TATCACAGAGGCTGTTCTTTTTC.................................................... 23 2 3 9.33 28 28 0 0 0
...........................................................................................TATCACGGTGGCTGTTCTTTTTC.................................................... 23 2 3 9.00 27 27 0 0 0
...........................................................................................TACCACAGTCGCTGTTCTTTTT..................................................... 22 2 3 9.00 27 27 0 0 0
..........................................................................................CTATCACAGTGGCTGTTCTTT....................................................... 21 1 3 9.00 27 27 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTTTA.................................................... 23 2 3 9.00 27 27 0 0 0
.............................................................................................TCACAGTGGCTGTTCTTTTTGC................................................... 22 1 2 9.00 18 18 0 0 0
...........................................................................................TATTACAGTGGCTGTTCTTTTTTT................................................... 24 2 2 9.00 18 18 0 0 0
...........................................................................................TATCACAGTCGCTGTTCTTTTC..................................................... 22 2 3 8.67 26 26 0 0 0
...........................................................................................TGTCACAGTCGCTGTTCTTTTT..................................................... 22 2 3 8.67 26 26 0 0 0
...........................................................................................TATCACAGTGGCTGTTATTTT...................................................... 21 1 3 8.67 26 26 0 0 0
...........................................................................................TTTCACAGTGGCTGTTCTTC....................................................... 20 2 3 8.67 26 26 0 0 0
...........................................................................................TATCACAGTGACTGTTCTTTTTC.................................................... 23 2 3 8.67 26 23 3 0 0
...........................................................................................TATCACATTGGCTGTTCTTT....................................................... 20 1 3 8.33 25 25 0 0 0
...........................................................................................TATTACATTGGCTGTTCTTTTT..................................................... 22 2 3 8.33 25 25 0 0 0
...........................................................................................TATCACACCGGCTGTTCTTTTT..................................................... 22 2 3 8.33 25 25 0 0 0
...........................................................................................TGTCGCAGTGGCTGTTCTTTTT..................................................... 22 2 3 8.33 25 25 0 0 0
...........................................................................................TATCACAGTGGCTGATCTTTTTC.................................................... 23 2 3 8.33 25 25 0 0 0
.......................................................AAAGAATAGATGCTGTGAGTAT......................................................................................... 22 1 1 8.00 8 8 0 0 0
...........................................................................................CGTCACAGTGGCTGTTCTTTTT..................................................... 22 2 3 8.00 24 24 0 0 0

Anti-sense strand reads

ATAAATATTCACATATATATAAATAAAGAGATCACAAAAAAGCGGAAATTTCATCTCTCTTATCTACGACACTCATATAGACAACGTAAATATAGTGTCACCGACAAGAAAAACATGGATTTACCGGTCTGTCGTAATAAAAAGCGGTTAACGGTTTATATTTCAC

**************************************..(((((((...((((((((((((..(((((((.((((..((...))..)))))))))))..))))))))))))....)))).)))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total V110

male body		 V049

head
..................................................................................................................................GTCGTAGTAAAAACCGATTA................ 20 3 20 0.10 2 2 0
....................................................ATCTCGATTATCTACGACAAT............................................................................................. 21 3 12 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20936265-20936430 - dmo-mir-6-1 Known_mirbase TATTTATA-AG------TG--TAT------A-------TATATTTATTT-CTCT------------AGTG----TT-TTTTCGCCTTTAAAGTAGAGAGAATAGATGCTGTGA-----GTATATCTGT-TGCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGC--CAGACAGCATTA-TT---T------------------TTCGCCAATTGCCAAATATAAAGTG
droVir3 scaffold_12875:4112573-4112738 + dvi-mir-6-1 Known_mirbase TATCCAT------GTC-----TAT------ATAGACTTAAA-ACTATATCGCCC-----------AGTTATCT-GT-TTATAGCCTTTAAAGTAGAGAGAATAGACGCTGTGCTGTATGTTTTGC-GT-ATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGC--CGTACAACGTTG-AT---TTCTTA-A-ATTG-----------------------T------G
droGri2 scaffold_15112:2108208-2108343 - dgr-mir-6-1 Known_mirbase TGTTT--------------GC--ATTTCCG--------T---T--T-CC-GATT------------TG---TG-GT-TTATAGCCTTTAATGTAAAGAGAATAGATGCTGTGCTGTATGTTGAAC-GT-ATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGC--CGTACAACAAAA-T-----------------------------------------------G
droWil2 scf2_1100000004514:1651281-1651439 - dwi-mir-6-1 Known_mirbase TATCCAGC-AAAG---TT--------------------------------TTCA------------AGTGGTTTTC-AACCAGCCTTTAAAGTAGAGAGAATAGTTGCTGTGTTTTATGCCCTTT-TC--AATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGC--CCCACAACAACAACAACA-----------------------ACACATTCAAAATATTAACAA
dp5 3:12677081-12677204 - dps-mir-6-1 Known_mirbase CGCTCAGC-GG------TG--GAG-------------------------------------------------ACCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC-TC--TATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-------------------------------------------------G
droPer2 scaffold_2:8906468-8906591 + dpe-mir-6-1 Known_mirbase CACTCAGC-GA------TG--GAG-------------------------------------------------ACCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC-TC--TATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-------------------------------------------------G
droAna3 scaffold_13266:9731785-9731925 + dan-mir-6-1 Known_mirbase GTTAG-----------GTGAC--AGGAC--------TC-------------------------------GCAG-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTAAGTTTCA------AAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAA-CCCGAGAATGT-T--CTG-----------------------T------G
droBip1 scf7180000396427:874740-874897 + TGACTTG---AA------G--GAG------------TC-------------------------------GCAG-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTATGTTACCA-------TTCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAGACCCAAGAAT-------TGTGATTTTTCGCCATCCGACAGATA------T
droKik1 scf7180000302679:88933-89068 - CAGTTCT---AA-G----------------------------GTT--------C---TAT-GAGCAA----GGATC-ACACAGCCTTTAAAGTAGAGAGAATAGCTGCTGCGCTGTATGTTTGC-------CATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--GAAACACCAAGG-CT---CA---------TT-----------------------T------G
droFic1 scf7180000454039:847619-847774 - AAACATAC----------------------T-------TAAAGTTACAA-TTTT------------AGTGATG-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTATTTATCAAAAATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAATG-TTT--TTGTTTTT--CTT-----------------------T------T
droEle1 scf7180000491201:2013562-2013706 - ATACAATCCAAA------------------------------A--A-CA-GTTC------------TGTGCCG-AA-TCTCAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTAACTAAAC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAAG-C---------------------------------GGCCAATA------T
droRho1 scf7180000780066:74048-74217 + ATAAGATTCGAA------------------------------ATTATCA-GTTC------------TGTGCCA-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTA-AC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAAG-CTC--TAGTTTTA--TTT------TTC-----CTGACAAATACCAAG-T
droBia1 scf7180000302143:3059394-3059534 - TACCATCC-GAA------------------------------ATTACCT-GTCC------------AATGCTG-AA-ACACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACCAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTGACATCAGACGT----------------------------------------T------T
droTak1 scf7180000415384:84435-84581 + ATCAA-G------G----------------------------GAT--------ATACTATTAACCAA---GTA-AA-ACATAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACACCAGTCGTTT--TAGTTT------------------------------A------T
droEug1 scf7180000409474:2397214-2397378 + TATTCATC-AAGG-------------TTAT--------TAA-ACTAAT--ACTC------------AGTGCCA-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGTTGTATGCTACTTAAC-AATATCTATATCACAGTGGCTGTTCTTTTTGCATCTAAAGTGA--CTAACATCATTCGTT---TTGTTTTT--T------------------GTTTTATA------T
dm3 chr2R:15548478-15548625 - dme-mir-6-1 Known_mirbase TCA-------AAG---TTGGC--AGCTTACT-------TAA----------------------------ACTT-AA-TCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATTA-TT---TAATTT-T--TTT-----------------------T------T
droSim2 2r:16195749-16195897 - dsi-mir-6-1 Known_mirbase CCA--------AG---TTGGC--AGCTTAC--------TAA----------------------------ACTT-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTTATATAC-CGTATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATTA-TT---TAATTT-ACTTTT-----------------------T------T
droSec2 scaffold_1:13063210-13063360 - dse-mir-6-1 Known_mirbase TTA--AGC-CAAG---TTGGC--AGCTTAC--------TAA----------------------------ACTT-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATTA-TT---TAATTT-A--CT------------------------T------T
droYak3 2R:13624159-13624306 + dya-mir-6-1 Known_mirbase ATGAAAGCCAAAG---TCGGC--ATCTCAC--------TAA----------------------------GTTT-AA-TCACAGCCTTTAACGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATAACA-AATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATTA-AT---AA---------TT-----------------------T------G
droEre2 scaffold_4845:9748727-9748871 - der-mir-6-1 Known_mirbase AG--------------TTGCC--AGCTTAC--------TTA----------------------------GCTA-AA-TCGCAGCCTTTAAAGTAGAGGGAATAGTTGCCGTGCTGTAAGTTAATATAT-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATCA-TT---TTGTTG-C-----------------------CTTATT------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TATTTATA-AG------TG--TAT------A-------TATATTTATTT-CTCT------------AGTG----TT-TTTTCGCCTTTAAAGTAGAGAGAATAGATGCTGTGA-----GTATATCTGT-TGCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGC--CAGACAGCATTA-TT---T------------------TTCGCCAATTGCCAAATATAAAGTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223175659.67526979301005269462
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21371420.67214262141002142425
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................2339565.33286966000286900
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2035461.67163853000163802
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2234979.00149371000149360
...............................................................................................AGAGAATAGATGCTGTGA-----GTAT..................................................................................................................2211583.00158313550012261
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2131153.673461000034610
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................243749.332248000022480
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................232623.501247100012442
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................203612.001836000018360
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213393.671181200011790
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193276.6783001008281
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233230.3369100006910
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................241191.0019100001910
...............................................................................................AGAGAATAGATGCTGTGA-----GTATA.................................................................................................................231164.00164012001520
...............................................................................................AGAGAATAGATGCTGTGA-----GTAC..................................................................................................................221147.0014702001450
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................203132.3339710003960
...............................................................................................AGAGAATAGATGCTGTGA-----GTA...................................................................................................................211126.0012604001220
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................22295.5019100001910
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22389.6726900002690
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20389.6726900002690
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................23368.6720600002060
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................19365.3319600001960
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................25353.6716100001610
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.6714300001430
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................21346.6714000001400
...............................................................................................AGAGAATAGATGCTGTGA-----GT....................................................................................................................20136.00360400320
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................24234.50690000690
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGT...........................................................................22133.00330000330
........................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................21331.33940000940
...........................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................19331.33940000940
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22328.67860000860
............................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................18328.33850000850
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18326.33790000790
...............................................................................................AGAGAATAGATGCTGTGA-----GC....................................................................................................................20118.00180000180
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTC..........................................................................25118.00180000180
...............................................................................................AGAGAATAGATGCTGTGA-----GTATT.................................................................................................................23117.00170400130
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................22316.00480000480
.........................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................19314.67440000440
..........................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................19311.00330000330
................................................................................................GAGAATAGATGCTGTGA-----GTAT..................................................................................................................21111.00110100100
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................21210.50210000210
........................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................22310.00300000300
............................................................................................................................................CACAGTGGCTGTTCTTTTTC............................................................................2039.33280000280
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGC...........................................................................2229.00180000180
droVir3
TATCCAT------GTC-----TAT------ATAGACTTAAA-ACTATATCGCCC-----------AGTTATCT-GT-TTATAGCCTTTAAAGTAGAGAGAATAGACGCTGTGCTGTATGTTTTGC-GT-ATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGC--CGTACAACGTTG-AT---TTCTTA-A-ATTG-----------------------T------GSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
...............................................................................................AGAGAATAGACGCTGTGCTGTA.......................................................................................................................2218730.0087300002390000000012870000000000000000004802583138354004942413529262011996745853003640000020722718592322141305346346276295
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
...............................................................................................AGAGAATAGACGCTGTGCTGT........................................................................................................................2111208.001208000560000000023300000000000000000020141019001155243200252026332231221716141002612000001110580100004759603238
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................241806.00806000850000000000000000000000000000000000001034342305626522151201212800033000000149761000017249431927
...............................................................................................AGAGAATAGACGCTGTGCTG.........................................................................................................................201697.0069700070000000000000000000000000000001228001120200146241710217810123000710000046540000003534252218
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................232359.007180001670000000000000000000000000000000000000011511152472715352218151200039000000151398200000664232819
............................................................................................TAGAGAGAATAGACGCTGTGCT..........................................................................................................................221292.0029200060000000000000000000000000000000402000053125191613259155111050006200000131300000011242623
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTC..........................................................................251178.0017800013000000000000000000000000000000000000000165162381710187578010900000031200000015300
...............................................................................................AGAGAATAGACGCTGTGCTGTAA......................................................................................................................231176.00176000200000000100000000000000000001012418001092522141411200000021000001126000000222966
...............................................................................................AGAGAATAGACGCTGTGC...........................................................................................................................181150.001500003000000000000000000000000000000000000001946474102050000000000000002800000072103
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
...............................................................................................AGAGAATAGACGCTGTGCTGTAAA.....................................................................................................................24178.00780000000000000000000000000000000000012100001124612000000000001000000011200000062521
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGT...........................................................................22133.00330004000000000000000000000000000000000000000010231103110000300000022300000020400
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
...............................................................................................AGAGAATAGACGCTGTGCTGTC.......................................................................................................................22125.0025000000000000000000000000000000000000000000002000000000000000000001011000000110000
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
.................................................................................................AGAATAGACGCTGTGCTGTATG.....................................................................................................................22120.00200000000000000000000000000000000000010000000510001200002000000000000300000030101
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
...............................................................................................AGAGAATAGACGCTGTGCTGC........................................................................................................................21116.001600011000000000000000000000000000000000000000310010000000000000000000000000000000
................................................................................................GAGAATAGACGCTGTGCTGTA.......................................................................................................................21114.00140000000000000000000000000000000000000000000450000000000000000000000100000010012
...............................................................................................AGAGAATAGACGCTGTGCTGTAT......................................................................................................................23114.00140001000000000000000000000000000000010200000100000101101000110000000000000011100
...............................................................................................AGAGAATAGACGCTGTGCT..........................................................................................................................19113.00130001000000000000000000000000000000000100000101010010000000010000000300000011001
...............................................................................................AGAGAATAGACGCTGTGCTGTAAAA....................................................................................................................25113.00130001000000000000000000000000000000000000002200000000000000000000010100000020013
............................................................................................TAGAGAGAATAGACGCTGTGC...........................................................................................................................21112.00120001000000000000000000000000000000000000000011010010000000100000000300000002010
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
.............................................................................................AGAGAGAATAGACGCTGTGCTG.........................................................................................................................22111.00110000000000000000000000000000000000000000002310012100000000000000000100000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................2429.501900018000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................AGAGAATAGACGCTGTGCTGTT.......................................................................................................................2219.0090001000000000000000000000000000000000000000100001012000000200000000000000000100
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA...........................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
...............................................................................................AGAGAATAGACGCTGTGCTGTAG......................................................................................................................2318.0080000000000000000000000000000000000000000000010200000000000100000000300000000001
............................................................................................................................................CACAGTGGCTGTTCTTTTTGTACC........................................................................2418.0080000000000000000000000000000000000000000001101000000000000000000000300000000002
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGTC..........................................................................2318.0080000000000000000000000000000000000000000000002011010100000200000000000000000000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
............................................................................................TAGAGAGAATAGACGCTGTGCTC.........................................................................................................................2317.0070000000000000000000000000000000000000000000112011100000000000000000000000000000
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................2426.50130002000000000000000000000000000000000000000000001000000000000000002400000003010
................................................................................................GAGAATAGACGCTGTGCTGT........................................................................................................................2016.0060000000000000000000000000000000000000000000200010000000000300000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTCA.........................................................................2616.0060000000000000000000000000000000000000000000101002200000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC...........................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
.........................................................................................................................................TATCACAGTGGCTGTTC..................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................2225.50110006000000000000000000000000000000000000000000010000000000000000000300000010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
.......................................................................................................................................TATATCACAGTGGCTGTTCTTT...............................................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT...........................................................................2315.0050001000000000000000000000000000000000000000000000001000000000000000100000010001
...............................................................................................AGAGAATAGACGCTGTGCTGG........................................................................................................................2115.0050000000000000000000000000000000000000000000020000020000000000000000100000000000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTT..........................................................................2524.5090001000000000000000000000000000000000000000102002100100000100000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
..................................................................................................GAATAGACGCTGTGCTGTA.......................................................................................................................1914.0040000000000000000000000000000000000000000000100000000000000000000010100000010000
.....................................................................................................................TGTTTTGC-GT-ATGGTCTA...................................................................................................1814.0040000000000000200000000000000000000000000000000000000000000000000000100000010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTCT.........................................................................2624.0080000000000000000000000000000000000000000000002001101101000100000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC...........................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
.............................................................................................AGAGAGAATAGACGCTGTGCT..........................................................................................................................2113.0030000000000000000000000000000000000000000000000100000000000100000000000000000100
............................................................................................TAGAGAGAATAGACGCTGTGCG..........................................................................................................................2213.0030000000000000000000000000000000000000000000000000001010000000000000000000001000
...............................................................................................AGAGAATAGACGCTGTGCTGTATG.....................................................................................................................2413.0030000000000000000000000000000000000000000000010000000000000000000000100000000100
.................................................................................................AGAATAGACGCTGTGCTGTA.......................................................................................................................2013.0030000000000000000000000000000000000010100000000000000000000010000000000000000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................2233.0090008000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................AGAGAATAGACGCTGTGCTGTG.......................................................................................................................2212.0020000000000000000000000000000000000000000000010000000000000000000000000000001000
droGri2
TGTTT--------------GC--ATTTCCG--------T---T--T-CC-GATT------------TG---TG-GT-TTATAGCCTTTAATGTAAAGAGAATAGATGCTGTGCTGTATGTTGAAC-GT-ATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGC--CGTACAACAAAA-T-----------------------------------------------GSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................2262.5015105
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2161.831129
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2060.33202
droWil2
TATCCAGC-AAAG---TT--------------------------------TTCA------------AGTGGTTTTC-AACCAGCCTTTAAAGTAGAGAGAATAGTTGCTGTGTTTTATGCCCTTT-TC--AATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGC--CCCACAACAACAACAACA-----------------------ACACATTCAAAATATTAACAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22335155.671054670180701036555
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2138217.002465103441243042
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031168.673506059534411
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................2331099.333298010032880
...............................................................................................AGAGAATAGTTGCTGTGTTTTATG.....................................................................................................................241379.003790003790
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193320.009600609504
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................243217.006510506460
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................223189.675690405650
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................183128.333850303820
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................23283.501670601610
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21370.3321101430680
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA..........................................................................25346.001380001380
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18345.001350101340
...............................................................................................AGAGAATAGTTGCTGTGTTTT........................................................................................................................21145.0045000450
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................23341.671250001250
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22340.331210101200
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23332.3397000970
...............................................................................................AGAGAATAGTTGCTGTGTTTTATGA....................................................................................................................25121.0021000210
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22318.6756000560
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20316.00480310170
...............................................................................................AGAGAATAGTTGCTGTGTTTTAT......................................................................................................................23116.0016000160
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................24112.001205070
...............................................................................................AGAGAATAGTTGCTGTGTTTTA.......................................................................................................................22111.0011000110
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20310.33310120190
.........................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2139.3328010270
........................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2238.6726000260
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2437.3322000220
...............................................................................................AGAGAATAGTTGCTGTGTTTTATGAA...................................................................................................................2617.00700070
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1936.0018000180
........................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................2134.6714000140
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2134.3313000130
...............................................................................................AGAGAATAGTTGCTGTGTTT.........................................................................................................................2014.00400040
...............................................................................................AGAGAATAGTTGCTGTGTTTTATA.....................................................................................................................2414.00400040
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................2433.6711000110
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................2423.50700070
.........................................................................................................................................TATCACAGTGGCTGTTCTTTAA.............................................................................2243.2513000130
..........................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.67807010
.............................................................................................................................................ACAGTGGCTGTTCTTTTTA............................................................................1932.67800080
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................2222.50500050
...................................................................................................AATAGTTGCTGTGTTTTATG.....................................................................................................................2012.00200020
...........................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1932.00600060
................................................................................................GAGAATAGTTGCTGTGTTTTATG.....................................................................................................................2312.00200020
............................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1831.67500050
........................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2331.33402020
........................................................................................................................................ATATCACAGTGGCTGTTCTT................................................................................2031.33400040
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTAA...........................................................................2231.33400040
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC...........................................................................2431.00301020
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................2121.00200020
...............................................................................................AGAGAATAGTTGCTGTGTTTTATT.....................................................................................................................2411.00100010
...............................................................................................AGAGAATAGTTGCTGTGTTTTATGC....................................................................................................................2511.00100010
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT...........................................................................2311.00100010
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGT...........................................................................2211.00101000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2131.00300030
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGTG..........................................................................2311.00100010
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC..........................................................................2531.00300030
...............................................................................................AGAGAATAGTTGCTGTGTTTTATGAAA..................................................................................................................2711.00100010
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTGA............................................................................2330.67200020
.............................................................................................................................................ACAGTGGCTGTTCTTTTA.............................................................................1830.67200020
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................2330.67200020
dp5
CGCTCAGC-GG------TG--GAG-------------------------------------------------ACCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC-TC--TATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-------------------------------------------------GSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22338201.331146040681510770178307000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2136091.0018273012371700029205000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2231760.0052800452724000000
...............................................................................................AGAGAATAGTTGCTGTGCTATA.......................................................................................................................221867.0086705123073900000
...............................................................................................AGAGAATAGTTGCTGTGCTAT........................................................................................................................211486.00486010214026200000
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203403.001209013410741000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................232249.004980794190000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................241242.002420232190000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213194.005820505770000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................213169.33508025060000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233159.004770124641000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233100.003000222770001000
...............................................................................................AGAGAATAGTTGCTGTGCTAC........................................................................................................................21170.007000700000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20362.00186001842000000
...............................................................................................AGAGAATAGTTGCTGTGCTATAT......................................................................................................................23151.005100304800000
...............................................................................................AGAGAATAGTTGCTGTGCTA.........................................................................................................................20150.0050012302600000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20340.001200106140000000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................22330.339107840000000
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19327.6783024590000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................24226.505300530000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22324.677406680000000
................................................................................................GAGAATAGTTGCTGTGCTATAT......................................................................................................................22118.001801101600000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20317.0051032190000000
...............................................................................................AGAGAATAGTTGCTGTGCTATT.......................................................................................................................22114.001400101300000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................23313.674108330000000
................................................................................................GAGAATAGTTGCTGTGCTAT........................................................................................................................20113.00130150700000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGT...........................................................................22112.001201110000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................24310.673206260000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22310.333109220000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1938.332502230000000
................................................................................................GAGAATAGTTGCTGTGCTATA.......................................................................................................................2118.0080020600000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2138.002401230000000
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1937.6723010130000000
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1837.002108130000000
...............................................................................................AGAGAATAGTTGCTGTGCTATC.......................................................................................................................2217.0070010600000
........................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................2135.331600160000000
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1835.001503120000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................2424.5090090000000
...............................................................................................AGAGAATAGTTGCTGTGCTATAAA.....................................................................................................................2414.0040010300000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2434.001202100000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................2224.0080710000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA..........................................................................2513.0030030000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................2333.0090180000000
...............................................................................................AGAGAATAGTTGCTGTGCTATAAAA....................................................................................................................2513.0030000300000
...............................................................................................AGAGAATAGTTGCTGTGC...........................................................................................................................1813.0030030000000
...............................................................................................AGAGAATAGTTGCTGTGCTATAA......................................................................................................................2313.0030020100000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT...........................................................................2313.0030210000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2332.0060230001000
...............................................................................................AGAGAATAGTTGCTGTGCTATAC......................................................................................................................2312.0020010100000
...............................................................................................AGAGAATAGTTGCTGTGCTATG.......................................................................................................................2212.0020010100000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2132.0060150000000
...............................................................................................AGAGAATAGTTGCTGTGCT..........................................................................................................................1912.0020010100000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTC..........................................................................2512.0020020000000
.........................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................1931.6750050000000
..........................................................................................................................................ATCACAGTGGCTGTTCTT................................................................................1831.6750500000000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................2121.5030120000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................2231.3340310000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................2231.3340040000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................2531.3340040000000
droPer2
CACTCAGC-GA------TG--GAG-------------------------------------------------ACCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC-TC--TATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAAG-------------------------------------------------GSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223146.00438941300115
...............................................................................................AGAGAATAGTTGCTGTGCTATA.......................................................................................................................221106.0010610105000
...............................................................................................AGAGAATAGTTGCTGTGCTAT........................................................................................................................21153.00533045032
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21325.00758620005
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21314.67440440000
...............................................................................................AGAGAATAGTTGCTGTGCTATAT......................................................................................................................23114.00140014000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................2325.0010070003
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2035.0015680001
...............................................................................................AGAGAATAGTTGCTGTGCTA.........................................................................................................................2015.005203000
................................................................................................GAGAATAGTTGCTGTGCTAT........................................................................................................................2013.003003000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2033.009090000
................................................................................................GAGAATAGTTGCTGTGCTATAT......................................................................................................................2212.002002000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................2412.002020000
...............................................................................................AGAGAATAGTTGCTGTGCTAG........................................................................................................................2111.001100000
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................1931.003030000
...............................................................................................AGAGAATAGTTGCTGTGCTATT.......................................................................................................................2211.001001000
...............................................................................................AGAGAATAGTTGCTGTGCTT.........................................................................................................................2011.001001000
...............................................................................................AGAGAATAGTTGCTGTGCTATATC.....................................................................................................................2411.001001000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................2221.002020000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2030.672020000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGA...........................................................................2220.501010000
...........................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1930.331010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2230.331010000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2230.331010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2230.331010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................2330.331010000
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1930.331010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................2030.331100000
droAna3
GTTAG-----------GTGAC--AGGAC--------TC-------------------------------GCAG-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTAAGTTTCA------AAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAA-CCCGAGAATGT-T--CTG-----------------------T------GSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22315043.3345130367447520074
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2133049.3391489790392028
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223462.001386013860000
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203276.00828267920082
...............................................................................................AGAGAATAGTGGCTGTGCTGTA.......................................................................................................................22172.00720720000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21357.6717301720001
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20337.0011101110000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21335.6710740670000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23334.6710401040000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23333.671013980000
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19317.33528390023
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................23214.00282240011
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGC...........................................................................22112.00120120000
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1938.67260260000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2038.00245190000
...............................................................................................AGAGAATAGTGGCTGTGCTGT........................................................................................................................2117.007070000
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1836.00180180000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2036.00187110000
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1836.00180180000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2235.33160150001
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................2415.005050000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2134.33130130000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2233.3310190000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2433.009170010
...............................................................................................AGAGAATAGTGGCTGTGCTGC........................................................................................................................2113.003030000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................2422.505050000
................................................................................................GAGAATAGTGGCTGTGCTGTA.......................................................................................................................2112.002110000
..........................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.006330000
...........................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1931.675050000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.675050000
...............................................................................................AGAGAATAGTGGCTGTGCTG.........................................................................................................................2011.001010000
......................................................................................TTAAAGTAGAGAGAATAGTGGCT...............................................................................................................................2311.001010000
.........................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................1931.003030000
...............................................................................................AGAGAATAGTGGCTGTGCT..........................................................................................................................1911.001010000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2131.003030000
...............................................................................................AGAGAATAGTGGCTGTGCTGTC.......................................................................................................................2211.001010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2330.672020000
........................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................2130.672020000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTAC.............................................................................2230.672020000
............................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1830.672020000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................2420.501010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTGA............................................................................2330.331010000
droBip1
TGACTTG---AA------G--GAG------------TC-------------------------------GCAG-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTATGTTACCA-------TTCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAGACCCAAGAAT-------TGTGATTTTTCGCCATCCGACAGATA------TSizeHit CountTotal NormTotal
No Reads
droKik1
CAGTTCT---AA-G----------------------------GTT--------C---TAT-GAGCAA----GGATC-ACACAGCCTTTAAAGTAGAGAGAATAGCTGCTGCGCTGTATGTTTGC-------CATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--GAAACACCAAGG-CT---CA---------TT-----------------------T------GSizeHit CountTotal NormTotal
No Reads
droFic1
AAACATAC----------------------T-------TAAAGTTACAA-TTTT------------AGTGATG-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTATTTATCAAAAATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAATG-TTT--TTGTTTTT--CTT-----------------------T------TSizeHit CountTotal NormTotal
No Reads
droEle1
ATACAATCCAAA------------------------------A--A-CA-GTTC------------TGTGCCG-AA-TCTCAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTAACTAAAC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAAG-C---------------------------------GGCCAATA------TSizeHit CountTotal NormTotal
No Reads
droRho1
ATAAGATTCGAA------------------------------ATTATCA-GTTC------------TGTGCCA-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTA-AC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAAG-CTC--TAGTTTTA--TTT------TTC-----CTGACAAATACCAAG-TSizeHit CountTotal NormTotal
No Reads
droBia1
TACCATCC-GAA------------------------------ATTACCT-GTCC------------AATGCTG-AA-ACACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACCAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTGACATCAGACGT----------------------------------------T------TSizeHit CountTotal NormTotal
No Reads
droTak1
ATCAA-G------G----------------------------GAT--------ATACTATTAACCAA---GTA-AA-ACATAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACACCAGTCGTTT--TAGTTT------------------------------A------TSizeHit CountTotal NormTotal
No Reads
droEug1
TATTCATC-AAGG-------------TTAT--------TAA-ACTAAT--ACTC------------AGTGCCA-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGTTGTATGCTACTTAAC-AATATCTATATCACAGTGGCTGTTCTTTTTGCATCTAAAGTGA--CTAACATCATTCGTT---TTGTTTTT--T------------------GTTTTATA------TSizeHit CountTotal NormTotal
No Reads
dm3
TCA-------AAG---TTGGC--AGCTTACT-------TAA----------------------------ACTT-AA-TCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATTA-TT---TAATTT-T--TTT-----------------------T------TSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
...............................................................................................AGGGAATAGTTGCTGTGCTGTA.......................................................................................................................22119494.0019494000000751581800000000000000000000000020500000001000000000000000000000000000000000000003076389733929474110110000000311210711417442800205692920010000000000000000000005105309273530000000000000000000000000000001000000000000001000000000000000000000000100100215013600000004127000010100000000000000000000000000000000000000000010123402500200000000002104030001100002120010000
...............................................................................................AGGGAATAGTTGCTGTGCTG.........................................................................................................................2015013.0050130000001710000000000000000000000000416600000000000000000000000000000000000000000000008110052800000000000001000000134600600120000000000000000000000003597921500002000000000000000000000000000000000000000000000000000000000100000000000000000000000000330000000000000000000000000000000000110000000000000490100200000000000000000000100000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
...............................................................................................AGGGAATAGTTGCTGTGCTGT........................................................................................................................2111791.0017910000005900000000000000000000000000164000000000000000000000000000000000000000000000018338154243000000000000000100120321760016204100000000000000000000000067410240900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000530000000000000000000001000000000000000000000000000763000000000000000000000000000000000000000000
................................................................................................GGGAATAGTTGCTGTGCTGTA.......................................................................................................................2111069.0010690000001012100000000000000000000000003000000000000000000000000000000000000000000000025442106414200010001010000200003296200274052000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000010000000000000000000000000000000000000000000000000092000000000000000000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
...............................................................................................AGGGAATAGTTGCTGTGCTGTAA......................................................................................................................231372.003720000001000000000000000000000000000200000000000000000000000000000000000000000000000291400480000000000000000000058000200400000000000000000000000004627500000000000000000000000000000000000000000000000000000000000000000000000000000000100000000110000000000000000000000000000000000000000000000000195000000000000000010000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................232281.005620000003121360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203249014500200000000000000000000000000000000000000010002000000000003298700000000000000001003000030000003690011010
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................241193.00193000000052200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030270820000000000000000000000000000000000000000000000001000000000128900000000000000000000000000000000130001010
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
...............................................................................................AGGGAATAGTTGCTGTGCT..........................................................................................................................19197.00970000000000000000000000000000000000240000000000000000000000000000000000000000000000150122200000000000000000000000003002000000000000000000000000054800000000000000000000000000000000000000000000000000000000000000000000000000000001000000000021000000000000000000000000000000000000000000000000013100200000000000000000000000000000000000000
................................................................................................GGGAATAGTTGCTGTGCTGT........................................................................................................................20188.008800000002000000000000000000000000005300000000000000000000000000000000000000000000008000120000000000000000000033000100100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTT.......................................................................................................................22179.00790000000100000000000000000000000000000000000000000000000000000000000000000000000001351170000000000000003000021000000040000000000000000000000001102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000010000000000000000000015000000000000000000000000000000000000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTC.......................................................................................................................22172.00720000000000000000000000000000000000000000000000000000000000000000000000000000000004000400000000000000010000010000000000000000000000000000000023430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000100000000000000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTAAA.....................................................................................................................24165.0065000000000000000000000000000000000010000000000000000000000000000000000000000000000116001000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035000000000000000000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
.....................................................................................................................AGTTAATATAC-CATATCTA...................................................................................................19147.00470000000000000000000000000000000000000000000000000000000000000000000000000000000002260490000000000000000000002000100200000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTACTG....................................................................................................................25130.00300000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTG.......................................................................................................................22125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000801040000000000000001000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
.................................................................................................GGAATAGTTGCTGTGCTGTA.......................................................................................................................20121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000830050000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................GGGAATAGTTGCTGTGCTG.........................................................................................................................19120.0020000000000000000000000000000000000040000000000000000000000000000000000000000000000600010000000000000000000001000200300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTAAG.....................................................................................................................24120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
..................................................................................................GAATAGTTGCTGTGCTGTA.......................................................................................................................19118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000001000210000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................21316.6750000010515131000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000004000000000000000000000000000000001000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21313.67410000202427000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000015700000000000000000000000000000000000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTAT......................................................................................................................23113.0013000000010000000000000000000000000000000000000000000000000000000000000000000000000500010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
droSim2
CCA--------AG---TTGGC--AGCTTAC--------TAA----------------------------ACTT-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTTATATAC-CGTATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATTA-TT---TAATTT-ACTTTT-----------------------T------TSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223816.00244800797972722282537553601315000
...............................................................................................AGGGAATAGTTGCTGTGCTGTA.......................................................................................................................221453.0045312421000303801500000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................213162.6748810811199451247312154104000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................23266.0013200851024018751000000
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19361.3318400212713562641000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTAA......................................................................................................................23160.0060005700000101100000
...............................................................................................AGGGAATAGTTGCTGTGCTG.........................................................................................................................20159.0059005400000000500000
...............................................................................................AGGGAATAGTTGCTGTGCTGT........................................................................................................................21151.0051004000000710300000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23350.671520001009061000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................20350.671520033123571614952001000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24343.331300000007852000000000
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18339.001170000610514001000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................24138.00380021200128130000000
...............................................................................................AGGGAATAGTTGCTGTGC...........................................................................................................................18120.0020002000000000000000
................................................................................................................................................GTGGCTGTTCTTTTT.............................................................................15318.67560000000027281000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21318.3355000550000000000000
................................................................................................GGGAATAGTTGCTGTGCTGTA.......................................................................................................................21116.0016001500000000100000
.........................................................................................................................................TATCACAGTGGCTGT....................................................................................15315.00450000000012302010000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................23313.33400000002119000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................24312.67380000002117000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTAAA.....................................................................................................................24111.0011001000000000100000
...............................................................................................AGGGAATAGTTGCTGTGCTGG........................................................................................................................21110.0010001000000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2237.3322000000128101000000
...............................................................................................AGGGAATAGTTGCTGTGCTGC........................................................................................................................2117.00700700000000000000
................................................................................................................................................GTGGCTGTTCTTTTTGT...........................................................................1716.00600000000330000000
..................................................................................................GAATAGTTGCTGTGCTGTA.......................................................................................................................1915.00500500000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTAA.........................................................................2613.00300000021000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTT.......................................................................................................................2213.00300300000000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTAC......................................................................................................................2313.00300300000000000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2032.67800053000000000000
.........................................................................................................................................TATCACAGTGGCTGTT...................................................................................1632.67800000010052000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................2222.50500040001000000000
...............................................................................................AGGGAATAGTTGCTGTGG...........................................................................................................................1812.00200200000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA..........................................................................2512.00200000011000000000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2031.33400030010000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2131.33400000022000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTT..........................................................................2521.00200000020000000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT...........................................................................2311.00100010000000000000
................................................................................................GGGAATAGTTGCTGTGCTGTAA......................................................................................................................2211.00100100000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................2421.00200000011000000000
................................................................................................GGGAATAGTTGCTGTGCTG.........................................................................................................................1911.00100000000000100000
................................................................................................GGGAATAGTTGCTGTGCTGTT.......................................................................................................................2111.00100100000000000000
...................................................................................................................................TATCTATATCACAGTGGCTGTT...................................................................................2211.00100100000000000000
...............................................................................................AGGGAATAGTTGCTGTGCT..........................................................................................................................1911.00100000000100000000
................................................................................................................................................GTGGCTGTTCTTTTTG............................................................................1621.00200000000020000000
............................................................................................TAGAGGGAATAGTTGCTGTGCT..........................................................................................................................2211.00100000000000100000
...............................................................................................AGGGAATAGTTGCTGTGCTGTG.......................................................................................................................2211.00100100000000000000
....................................................................................................ATAGTTGCTGTGCTGTAA......................................................................................................................1811.00100100000000000000
.................................................................................................................................................TGGCTGTTCTTTTTGT...........................................................................1621.00200000000020000000
.....................................................................................................................AGTTTATATAC-CGTATCTA...................................................................................................1911.00100000000010000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2230.67200010010000000000
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1830.67200010010000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................2030.67200200000000000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2130.67200020000000000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................2230.67200000002000000000
droSec2
TTA--AGC-CAAG---TTGGC--AGCTTAC--------TAA----------------------------ACTT-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATTA-TT---TAATTT-A--CT------------------------T------TSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22327140.338142117131478922772
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2138065.33241962271023821138
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................2323579.5071591011697978
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031417.004251233419035
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................2411338.001338390127029
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193259.677793075719
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233126.33379203689
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................183112.00336003342
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21392.0027614701281
...............................................................................................AGGGAATAGTTGCTGTGCTGTA.......................................................................................................................22171.007120690
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18367.33202101965
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...........................................................................24254.50109101080
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22332.339720941
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22329.008710851
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................22222.5045160290
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20319.6759100481
.............................................................................................................................................ACAGTGGCTGTTCTTTTTG............................................................................19216.503300330
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24314.004200411
.............................................................................................................................................ACAGTGGCTGTTCTTTTTGT...........................................................................20113.001300130
...............................................................................................AGGGAATAGTTGCTGTGCTG.........................................................................................................................20112.001210101
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT...........................................................................23112.00124080
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20311.3334230110
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23311.003310320
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTT..........................................................................25210.002000191
...............................................................................................AGGGAATAGTTGCTGTGCTGT........................................................................................................................2119.0090090
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2237.332220200
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA..........................................................................2517.0070061
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1936.331920170
...........................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1935.331620140
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................2425.001000100
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGT...........................................................................2215.0051040
.........................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2134.331300130
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2133.671100110
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2333.331000100
............................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1832.3371060
..........................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.3375020
................................................................................................GGGAATAGTTGCTGTGCTGTA.......................................................................................................................2112.0020011
...............................................................................................AGGGAATAGTTGCTGTGCT..........................................................................................................................1912.0020020
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2132.0062040
.........................................................................................................................................TATCACAGTGGCTGTTCTTA...............................................................................2031.0030030
............................................................................................................................................CACAGTGGCTGTTCTTTTTG............................................................................2021.0021010
.............................................................................................................................................ACAGTGGCTGTTCTTTTTGTA..........................................................................2111.0010010
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................2231.0030030
............................................................................................TAGAGGGAATAGTTGCTGTGC...........................................................................................................................2111.0010010
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTG............................................................................2121.0021010
...............................................................................................................................................AGTGGCTGTTCTTTTTGT...........................................................................1811.0010001
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................2031.0030021
droYak3
ATGAAAGCCAAAG---TCGGC--ATCTCAC--------TAA----------------------------GTTT-AA-TCACAGCCTTTAACGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATAACA-AATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATTA-AT---AA---------TT-----------------------T------GSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22388528.672655860234265335500120000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21315870.00476100634753810080000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2232566.67770000770000000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTA.......................................................................................................................2211641.001641101583570000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031006.673020015300310010000
...............................................................................................AGGGAATAGTTGCTGTGCTGT........................................................................................................................211363.0036300348150000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................213276.008280082800000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................232209.004180241600000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233165.004950149400000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................203138.334150041500000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................241135.001350113400000000
...............................................................................................AGGGAATAGTTGCTGTGCTGC........................................................................................................................211131.001310013100000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21392.002760926700000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23390.332710226900000000
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19362.001860218400000000
...............................................................................................AGGGAATAGTTGCTGTGCTG.........................................................................................................................20152.0052004750000000
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.001410114000000000
................................................................................................GGGAATAGTTGCTGTGCTGTA.......................................................................................................................21146.0046004240000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22331.3394009400000000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20322.3367006700000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................24221.5043004300000000
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................19321.0063016200000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................21316.6750005000000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20312.6738023600000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTT.......................................................................................................................22112.0012001020000000
...............................................................................................AGGGAATAGTTGCTGTGCT..........................................................................................................................19110.001000910000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTAA......................................................................................................................2319.00900810000000
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1837.3322012100000000
...............................................................................................AGGGAATAGTTGCTGTGC...........................................................................................................................1817.00700700000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2235.6717001700000000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2235.6717001700000000
...............................................................................................AGGGAATAGTTGCTGTGCTGTC.......................................................................................................................2215.00500500000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2134.6714001400000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................2224.50900900000000
................................................................................................GGGAATAGTTGCTGTGCTGT........................................................................................................................2014.00400400000000
...............................................................................................AGGGAATAGTTGCTGTGCC..........................................................................................................................1913.00300300000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTGC.............................................................................2233.00900900000000
.........................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................1932.67800800000000
............................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1832.67800800000000
...........................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1932.33701600000000
droEre2
AG--------------TTGCC--AGCTTAC--------TTA----------------------------GCTA-AA-TCGCAGCCTTTAAAGTAGAGGGAATAGTTGCCGTGCTGTAAGTTAATATAT-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATCA-TT---TTGTTG-C-----------------------CTTATT------TSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22310965.6732897490027970056160
.........................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2132527.677583713686301510
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223198.00594958500000
.........................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203195.675877550501240
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213131.673953702500000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTG............................................................................232114.002284518200100
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...........................................................................24182.0082166600000
...............................................................................................AGGGAATAGTTGCCGTGCTGTA.......................................................................................................................22128.002821808000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21326.007817700000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23319.005715600000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23318.6756163800020
..........................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20317.3352411100000
.........................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20316.334904801000
.........................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19314.3343103001110
...........................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20310.673223900000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC...........................................................................2425.501101100000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2235.331661000000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTG............................................................................2222.5052300000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2132.3374300000
............................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1932.0061500000
...........................................................................................................................................TCACAGTGGCTGTTCTTTTTGT...........................................................................2212.0021100000
..........................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.0066000000
...............................................................................................AGGGAATAGTTGCCGTGCTGT........................................................................................................................2112.0020101000
...............................................................................................AGGGAATAGTTGCCGTGCTGC........................................................................................................................2112.0020200000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT...........................................................................2312.0021100000
................................................................................................GGGAATAGTTGCCGTGCTGTA.......................................................................................................................2112.0020200000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................2431.6750500000
.............................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1831.3340400000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2331.3342200000
........................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.3341300000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2131.0030300000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................2231.0030300000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA..........................................................................2511.0011000000
.............................................................................................AGAGGGAATAGTTGCCGTGCT..........................................................................................................................2111.0010100000
.........................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1831.0032100000
................................................................................................GGGAATAGTTGCCGTGCTGT........................................................................................................................2011.0011000000
...........................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1930.6720200000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................2330.6720200000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2230.6722000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2430.6722000000
............................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1830.6720200000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTACC............................................................................2330.6720200000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTG.............................................................................2130.6722000000
.........................................................................................................................................TATCACAGTGGCTGTTCTTTGC.............................................................................2230.3310100000
..........................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................2230.3311000000

Generated: 10/20/2015 at 07:38 PM