ID:

dmo-mir-5

 Coordinate:

scaffold_6496:20936464-20936535 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.4 -41.1 -41.1

Flybase annnotation

pre_miRNA [Dmoj\mir-5-RM]; utr3 [utr3_minus_3616]; miRNA [Dmoj\miR-5-RA]

No Repeatable elements found

Sense Strand Reads

GAAAAGTTTTTATGAAAGTTCAAAATGCAAACTCGATGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTAATCGACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCAGTCCCCCAGACTACAATATGAATGTGAATATTTATAAGTGTATAT

***************************************..((((((((((((((((((((.(((((((((((((((...((((.....)))))))))))))))))))))))))).)))))))))..)))).**************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V110

male body		 V049

head

 V056

head
......................................................AAAGGAACGATCGTTGTGATATG............................................................................................... 23 0 1 103385.00 103385 94444 8896 20 11 6 8
...............................................................................................TATCACAGTGATTTTCCTTTAT....................................................... 22 0 1 63878.00 63878 59046 4805 23 1 2 1
......................................................AAAGGAACGATCGTTGTGATAT................................................................................................ 22 0 1 62994.00 62994 60204 2770 6 10 3 1
...............................................................................................TATCACAGTGATTTTCCTTTATA...................................................... 23 0 1 57007.00 57007 54910 2091 6 0 0 0
......................................................AAAGGAACGATCGTTGTGATA................................................................................................. 21 0 1 7688.00 7688 7311 376 0 0 0 1
................................................................................................ATCACAGTGATTTTCCTTTAT....................................................... 21 0 1 5487.00 5487 5196 290 1 0 0 0
......................................................AGAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 5295.00 5295 5284 11 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATA...................................................... 22 0 1 4838.00 4838 4732 106 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAC................................................................................................ 22 1 1 4143.00 4143 4140 3 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTAC....................................................... 22 1 1 3555.00 3555 3545 10 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTAT....................................................... 22 1 1 3418.00 3418 3415 3 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 3057.00 3057 3057 0 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTATA...................................................... 23 1 1 2916.00 2916 2914 2 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATC...................................................... 23 1 1 1942.00 1942 1916 24 2 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTAT....................................................... 22 1 1 1854.00 1854 1852 2 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTAT....................................................... 22 1 1 1758.00 1758 1754 4 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTATA...................................................... 23 1 1 1750.00 1750 1749 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGT.............................................................................................. 24 1 1 1743.00 1743 1662 81 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTATA...................................................... 23 1 1 1595.00 1595 1594 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAT.................................................................................................. 20 0 1 1261.00 1261 1022 227 2 8 0 2
..............................................................................................CTATCACAGTGATTTTCCTTTAT....................................................... 23 1 1 1138.00 1138 1132 6 0 0 0 0
......................................................AAATGAACGATCGTTGTGATATG............................................................................................... 23 1 1 1119.00 1119 1118 1 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTA........................................................ 21 0 1 1095.00 1095 1064 30 1 0 0 0
......................................................AAAGGAACGATCGTTGTGATATT............................................................................................... 23 1 1 1093.00 1093 1011 81 0 0 1 0
...............................................................................................TATCACAGTGATTTTCCTTTATAA..................................................... 24 1 1 1051.00 1051 942 108 1 0 0 0
..............................................................................................CTATCACAGTGATTTTCCTTTATA...................................................... 24 1 1 1046.00 1046 1042 4 0 0 0 0
................................................................................................AGCACAGTGATTTTCCTTTAT....................................................... 21 1 1 899.00 899 896 3 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 876.00 876 874 2 0 0 0 0
......................................................AAATGAACGATCGTTGTGATAT................................................................................................ 22 1 1 840.00 840 839 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGC.............................................................................................. 24 0 1 829.00 829 728 97 0 4 0 0
................................................................................................AGCACAGTGATTTTCCTTTATA...................................................... 22 1 1 748.00 748 748 0 0 0 0 0
...............................................................................................TTTCACAGTGATTTTCCTTTAT....................................................... 22 1 1 602.00 602 602 0 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 587.00 587 586 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGA.............................................................................................. 24 1 1 578.00 578 539 38 0 0 1 0
...............................................................................................TTTCACAGTGATTTTCCTTTATA...................................................... 23 1 1 543.00 543 542 1 0 0 0 0
...............................................................................................TATCACAGTGCTTTTCCTTTAT....................................................... 22 1 1 541.00 541 512 29 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATATG............................................................................................... 23 1 1 513.00 513 502 11 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 489.00 489 488 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATC............................................................................................... 23 1 1 468.00 468 439 29 0 0 0 0
...............................................................................................TATCACAGTGCTTTTCCTTTATA...................................................... 23 1 1 459.00 459 448 11 0 0 0 0
......................................................AAAGGGACGATCGTTGTGATATG............................................................................................... 23 1 1 404.00 404 381 22 0 0 0 1
......................................................AAAGGAAAGATCGTTGTGATATG............................................................................................... 23 1 1 380.00 380 370 10 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATA................................................................................................. 21 1 1 362.00 362 362 0 0 0 0 0
......................................................AAAGTAACGATCGTTGTGATATG............................................................................................... 23 1 1 358.00 358 356 2 0 0 0 0
......................................................AACGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 355.00 355 354 1 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATAT................................................................................................ 22 1 1 348.00 348 347 1 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 348.00 348 347 1 0 0 0 0
...............................................................................................CATCACAGTGATTTTCCTTTAT....................................................... 22 1 1 314.00 314 310 4 0 0 0 0
......................................................AAAGGAACGATCTTTGTGATAT................................................................................................ 22 1 1 301.00 301 300 0 1 0 0 0
................................................................................................ATAACAGTGATTTTCCTTTAT....................................................... 21 1 1 301.00 301 300 1 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTAC....................................................... 21 1 1 292.00 292 292 0 0 0 0 0
.................................................................................................TCACAGTGATTTTCCTTTATA...................................................... 21 0 1 260.00 260 249 11 0 0 0 0
................................................................................................ATAACAGTGATTTTCCTTTATA...................................................... 22 1 1 256.00 256 256 0 0 0 0 0
.......................................................AAGGAACGATCGTTGTGATATG............................................................................................... 22 0 1 256.00 256 251 4 1 0 0 0
...............................................................................................CATCACAGTGATTTTCCTTTATA...................................................... 23 1 1 255.00 255 250 5 0 0 0 0
......................................................AAAGGGACGATCGTTGTGATAT................................................................................................ 22 1 1 247.00 247 234 13 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATAT................................................................................................ 22 1 1 244.00 244 240 4 0 0 0 0
......................................................AAAGTAACGATCGTTGTGATAT................................................................................................ 22 1 1 244.00 244 243 1 0 0 0 0
......................................................AAAGGAACGATCGTTGATAT.................................................................................................. 20 2 1 231.00 231 231 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATAC................................................................................................ 22 2 1 224.00 224 224 0 0 0 0 0
...............................................................................................GATCACAGTGATTTTCCTTTAT....................................................... 22 1 1 211.00 211 210 1 0 0 0 0
......................................................AAAGGAACGATCTTTGTGATATG............................................................................................... 23 1 1 208.00 208 207 1 0 0 0 0
...............................................................................................GATCACAGTGATTTTCCTTTATA...................................................... 23 1 1 206.00 206 206 0 0 0 0 0
...............................................................................................TATCACAGCGATTTTCCTTTATA...................................................... 23 1 1 199.00 199 197 2 0 0 0 0
......................................................AAAGGAACGATCGTTGTTATATG............................................................................................... 23 1 1 199.00 199 190 9 0 0 0 0
...............................................................................................TATCACAGCGATTTTCCTTTAT....................................................... 22 1 1 193.00 193 180 13 0 0 0 0
......................................................AAAGGAACTATCGTTGTGATATG............................................................................................... 23 1 1 189.00 189 186 3 0 0 0 0
......................................................AAAGGTACGATCGTTGTGATATG............................................................................................... 23 1 1 189.00 189 181 8 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTAC....................................................... 22 2 1 189.00 189 189 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAT..................................................... 24 1 1 188.00 188 161 27 0 0 0 0
......................................................AAAGGAACGATCGTTGGGATATG............................................................................................... 23 1 1 185.00 185 173 12 0 0 0 0
..............................................................................................CGATCACAGTGATTTTCCTTTATA...................................................... 24 2 1 184.00 184 184 0 0 0 0 0
......................................................AACGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 177.00 177 176 1 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATT...................................................... 23 1 1 177.00 177 172 5 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAC..................................................... 24 1 1 173.00 173 172 1 0 0 0 0
.................................................................................................TCACAGTGATTTTCCTTTAT....................................................... 20 0 1 173.00 173 157 16 0 0 0 0
..............................................................................................CGATCACAGTGATTTTCCTTTAT....................................................... 23 2 1 172.00 172 172 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTTCTTTAT....................................................... 22 1 1 160.00 160 151 9 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATC...................................................... 22 1 1 160.00 160 159 0 1 0 0 0
................................................................................................ATCTCAGTGATTTTCCTTTAT....................................................... 21 1 1 155.00 155 155 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTTATAT................................................................................................ 22 1 1 153.00 153 152 1 0 0 0 0
...............................................................................................TATCACAGTGATTTTTCTTTATA...................................................... 23 1 1 150.00 150 145 5 0 0 0 0
......................................................AAAGGAACGATCGTTGTGTTATG............................................................................................... 23 1 1 148.00 148 133 15 0 0 0 0
...............................................................................................TATCTCAGTGATTTTCCTTTAT....................................................... 22 1 1 147.00 147 141 6 0 0 0 0
...............................................................................................AATCACAGTGATTTTCCTTTATA...................................................... 23 1 1 143.00 143 142 1 0 0 0 0
......................................................AAAGGAGCGATCGTTGTGATATG............................................................................................... 23 1 1 142.00 142 129 13 0 0 0 0
.......................................................AAGGAACGATCGTTGTGATAT................................................................................................ 21 0 1 142.00 142 142 0 0 0 0 0
.....................................................CAAAGGAACGATCGTTGTGATATG............................................................................................... 24 1 1 133.00 133 132 1 0 0 0 0
...................................................................................................ACAGTGATTTTCCTTTAT....................................................... 18 0 1 132.00 132 75 57 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATA............................................................................................... 23 1 1 130.00 130 117 13 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAC.................................................................................................. 20 1 1 130.00 130 130 0 0 0 0 0
......................................................AAAGGAACGATCGGTGTGATATG............................................................................................... 23 1 1 129.00 129 115 14 0 0 0 0
......................................................AAAGGAACGATCGTTGGGATAT................................................................................................ 22 1 1 128.00 128 127 1 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTAC....................................................... 22 2 1 122.00 122 122 0 0 0 0 0
................................................................................................ATCTCAGTGATTTTCCTTTATA...................................................... 22 1 1 121.00 121 121 0 0 0 0 0
......................................................AAAGGAACGATCGTTTTGATAT................................................................................................ 22 1 1 120.00 120 118 2 0 0 0 0
...............................................................................................AATCACAGTGATTTTCCTTTAT....................................................... 22 1 1 120.00 120 117 3 0 0 0 0
.......................................................AAAGAACGATCGTTGTGATATG............................................................................................... 22 1 1 116.00 116 116 0 0 0 0 0
......................................................AAAGGAACCATCGTTGTGATATG............................................................................................... 23 1 1 115.00 115 114 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTC............................................................................................. 25 2 1 113.00 113 80 32 1 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATAA..................................................... 23 1 1 110.00 110 105 5 0 0 0 0
..................................................................................................CACAGTGATTTTCCTTTAT....................................................... 19 0 1 108.00 108 107 1 0 0 0 0
......................................................AAAGGAACGATCGCTGTGATATG............................................................................................... 23 1 1 108.00 108 71 37 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTATC...................................................... 23 2 1 108.00 108 108 0 0 0 0 0
......................................................AAAGAAACGATCGTTGTGATATG............................................................................................... 23 1 1 108.00 108 99 9 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATGTG............................................................................................... 23 1 1 107.00 107 94 13 0 0 0 0
...............................................................................................TATCTCAGTGATTTTCCTTTATA...................................................... 23 1 1 105.00 105 102 3 0 0 0 0
......................................................AAACGAACGATCGTTGTGATATG............................................................................................... 23 1 1 104.00 104 100 4 0 0 0 0
..................................................................................................CACAGTGATTTTCCTTTATA...................................................... 20 0 1 103.00 103 103 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATGT.............................................................................................. 24 2 1 103.00 103 103 0 0 0 0 0
......................................................AAATGAACGATCGTTGTGATA................................................................................................. 21 1 1 102.00 102 102 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTT......................................................... 20 0 1 101.00 101 58 40 3 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTAC....................................................... 22 2 1 101.00 101 101 0 0 0 0 0
......................................................AAAGGTACGATCGTTGTGATAT................................................................................................ 22 1 1 98.00 98 95 3 0 0 0 0
......................................................AAAGGAACGATTGTTGTGATATG............................................................................................... 23 1 1 95.00 95 90 5 0 0 0 0
...................................................................................................ACAGTGATTTTCCTTTATA...................................................... 19 0 1 95.00 95 68 27 0 0 0 0
.....................................................CAAAGGAACGATCGTTGTGATAT................................................................................................ 23 1 1 95.00 95 95 0 0 0 0 0
......................................................AAAGGAACAATCGTTGTGATATG............................................................................................... 23 1 1 94.00 94 87 7 0 0 0 0
......................................................AAAGGAACGATCGTTTTGATATG............................................................................................... 23 1 1 92.00 92 85 7 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGTATG............................................................................................... 23 1 1 90.00 90 53 37 0 0 0 0
......................................................AAAGGAACGATCGTTGCGATATG............................................................................................... 23 1 1 90.00 90 66 24 0 0 0 0
.............................................................................................TCTATCACAGTGATTTTCCTTTAT....................................................... 24 2 1 88.00 88 88 0 0 0 0 0
......................................................AAAGGAACGATCGGTGTGATAT................................................................................................ 22 1 1 86.00 86 81 5 0 0 0 0
......................................................AAAGCAACGATCGTTGTGATATG............................................................................................... 23 1 1 82.00 82 81 1 0 0 0 0
......................................................GAAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 82.00 82 75 7 0 0 0 0
......................................................AAAGGAACGATCGTTGTGA................................................................................................... 19 0 1 81.00 81 78 2 0 0 1 0
......................................................AAAGGAACGATCGTTGTAATATG............................................................................................... 23 1 1 80.00 80 75 5 0 0 0 0
....................................................................................................CAGTGATTTTCCTTTATA...................................................... 18 0 1 79.00 79 79 0 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTA........................................................ 20 0 1 79.00 79 76 3 0 0 0 0
......................................................AAAGGAACTATCGTTGTGATAT................................................................................................ 22 1 1 77.00 77 77 0 0 0 0 0
......................................................AAAGGAGCGATCGTTGTGATAT................................................................................................ 22 1 1 74.00 74 67 7 0 0 0 0
......................................................AAAAGAACGATCGTTGTGATATG............................................................................................... 23 1 1 72.00 72 67 5 0 0 0 0
......................................................AAGGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 71.00 71 64 7 0 0 0 0
......................................................AAAGGAACGATTGTTGTGATAT................................................................................................ 22 1 1 69.00 69 67 2 0 0 0 0
......................................................AAAGAAACGATCGTTGTGATAT................................................................................................ 22 1 1 69.00 69 67 2 0 0 0 0
...............................................................................................TGTTACAGTGATTTTCCTTTATA...................................................... 23 2 1 69.00 69 69 0 0 0 0 0
..............................................................................................CTATCACAGTGATTTTCCTTTAC....................................................... 23 2 1 66.00 66 66 0 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTA........................................................ 21 1 1 65.00 65 65 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGTTAT................................................................................................ 22 1 1 64.00 64 56 8 0 0 0 0
......................................................AAAGGAACGTTCGTTGTGATATG............................................................................................... 23 1 1 63.00 63 62 1 0 0 0 0
.............................................................................................TCTATCACAGTGATTTTCCTTTATA...................................................... 25 2 1 63.00 63 63 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAAATG............................................................................................... 23 1 1 60.00 60 55 5 0 0 0 0
......................................................AAAGGAACCATCGTTGTGATAT................................................................................................ 22 1 1 60.00 60 60 0 0 0 0 0
......................................................AAAAGAACGATCGTTGTGATAT................................................................................................ 22 1 1 60.00 60 57 3 0 0 0 0
......................................................AAAGGAACAATCGTTGTGATAT................................................................................................ 22 1 1 60.00 60 55 5 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATA................................................................................................. 21 1 1 59.00 59 59 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTCATATG............................................................................................... 23 1 1 59.00 59 49 10 0 0 0 0
......................................................AAATGAACGATCGTTGTGATAC................................................................................................ 22 2 1 58.00 58 58 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATACG............................................................................................... 23 1 1 57.00 57 49 8 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTATAA..................................................... 24 2 1 57.00 57 57 0 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTATC...................................................... 23 2 1 57.00 57 57 0 0 0 0 0
................................................................................................AGCTCAGTGATTTTCCTTTATA...................................................... 22 2 1 56.00 56 56 0 0 0 0 0
......................................................AAAGGAACGATCGCTGTGATAT................................................................................................ 22 1 1 55.00 55 49 6 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAGATG............................................................................................... 23 1 1 55.00 55 44 11 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATGT................................................................................................ 22 1 1 54.00 54 53 1 0 0 0 0
...............................................................................................TATCACATTGATTTTCCTTTATA...................................................... 23 1 1 54.00 54 53 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATCTG............................................................................................... 23 1 1 54.00 54 0 54 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATA................................................................................................. 21 1 1 54.00 54 53 1 0 0 0 0
......................................................AAAGGAACGATCGTCGTGATATG............................................................................................... 23 1 1 53.00 53 46 7 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATG...................................................... 23 1 1 53.00 53 52 1 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATA................................................................................................. 21 1 1 53.00 53 53 0 0 0 0 0
.................................................................................................TCACAGTGATTTTCCTTTATAA..................................................... 22 1 1 52.00 52 49 3 0 0 0 0
...............................................................................................TATCACAGTGGTTTTCCTTTAT....................................................... 22 1 1 52.00 52 44 8 0 0 0 0
......................................................AAAGGAACGATCGTTGTAATAT................................................................................................ 22 1 1 51.00 51 51 0 0 0 0 0
...............................................................................................TATCATAGTGATTTTCCTTTAT....................................................... 22 1 1 51.00 51 45 6 0 0 0 0
...............................................................................................TATCAGAGTGATTTTCCTTTATA...................................................... 23 1 1 51.00 51 50 1 0 0 0 0
...............................................................................................TATCACATTGATTTTCCTTTAT....................................................... 22 1 1 50.00 50 48 2 0 0 0 0
...............................................................................................TATCGCAGTGATTTTCCTTTAT....................................................... 22 1 1 50.00 50 45 5 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGTAT................................................................................................ 22 1 1 50.00 50 37 13 0 0 0 0
......................................................AAAGGAACGGTCGTTGTGATATG............................................................................................... 23 1 1 49.00 49 33 16 0 0 0 0
......................................................AAGGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 49.00 49 43 5 1 0 0 0
...........................................................................................GATCTATCACAGTGATTTTCCTTTAT....................................................... 26 3 1 49.00 49 48 1 0 0 0 0
......................................................GAAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 49.00 49 45 4 0 0 0 0
...............................................................................................TATCACAGTGACTTTCCTTTAT....................................................... 22 1 1 48.00 48 43 5 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTATC...................................................... 23 2 1 48.00 48 48 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTT............................................................................................. 25 2 1 47.00 47 21 26 0 0 0 0
......................................................AAAGGAACGATCGATGTGATATG............................................................................................... 23 1 1 47.00 47 39 8 0 0 0 0
...............................................................................................TATCACAGTGACTTTCCTTTATA...................................................... 23 1 1 47.00 47 44 3 0 0 0 0
......................................................AAAGGAACGATCGTTGCGATAT................................................................................................ 22 1 1 47.00 47 37 10 0 0 0 0
......................................................AAAGGAATGATCGTTGTGATATG............................................................................................... 23 1 1 46.00 46 41 5 0 0 0 0
...............................................................................................TTTCACAGTGATTTTCCTTTAC....................................................... 22 2 1 46.00 46 46 0 0 0 0 0
................................................................................................AGCACAGTGATTTTCCTTTAC....................................................... 21 2 1 46.00 46 46 0 0 0 0 0
...............................................................................................TATCACAGTGCTGTTCTTTT......................................................... 20 3 7 45.43 318 316 2 0 0 0 0
................................................................................................AGCTCAGTGATTTTCCTTTAT....................................................... 21 2 2 45.00 90 90 0 0 0 0 0
.......................................................AAAGAACGATCGTTGTGATAT................................................................................................ 21 1 1 45.00 45 45 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAAA.................................................... 25 2 1 45.00 45 42 3 0 0 0 0
......................................................AAAGGAACGACCGTTGTGATATG............................................................................................... 23 1 1 43.00 43 36 7 0 0 0 0
......................................................AAAGGAACGATGGTTGTGATATG............................................................................................... 23 1 1 43.00 43 42 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGCTATG............................................................................................... 23 1 1 43.00 43 3 40 0 0 0 0
...............................................................................................TATCACAGTAATTTTCCTTTAT....................................................... 22 1 1 43.00 43 38 5 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTGTA...................................................... 23 1 1 42.00 42 36 6 0 0 0 0
......................................................AGAGGAACGATCGTTGTGAT.................................................................................................. 20 1 1 42.00 42 42 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATT............................................................................................... 23 2 1 42.00 42 42 0 0 0 0 0
...............................................................................................TATCATAGTGATTTTCCTTTATA...................................................... 23 1 1 41.00 41 39 2 0 0 0 0
......................................................AAACGAACGATCGTTGTGATAT................................................................................................ 22 1 1 41.00 41 41 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATGA.............................................................................................. 24 2 1 41.00 41 41 0 0 0 0 0
...............................................................................................TATCACGGTGATTTTCCTTTAT....................................................... 22 1 1 41.00 41 35 6 0 0 0 0
...............................................................................................TATCGCAGTGATTTTCCTTTATA...................................................... 23 1 1 40.00 40 39 1 0 0 0 0
......................................................AAAGCAACGATCGTTGTGATAT................................................................................................ 22 1 1 40.00 40 40 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAA................................................................................................ 22 1 1 40.00 40 39 1 0 0 0 0
................................................................................................TTCACAGTGATTTTCCTTTATA...................................................... 22 1 1 39.00 39 39 0 0 0 0 0
...............................................................................................TATCAGAGTGATTTTCCTTTAT....................................................... 22 1 1 39.00 39 38 1 0 0 0 0
................................................................................................TTCACAGTGATTTTCCTTTAT....................................................... 21 1 1 39.00 39 39 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCCTTAT....................................................... 22 1 1 38.00 38 30 8 0 0 0 0
......................................................AAAGGAACGATCGTTGAGATATG............................................................................................... 23 1 1 37.00 37 22 15 0 0 0 0
......................................................AAAGGAACGATCATTGTGATATG............................................................................................... 23 1 1 37.00 37 31 6 0 0 0 0
...............................................................................................TATCACACTGATTTTCCTTTAT....................................................... 22 1 1 37.00 37 36 1 0 0 0 0
.......................................................AAGTAACGATCGTTGTGATATG............................................................................................... 22 1 1 37.00 37 37 0 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTA........................................................ 21 1 1 36.00 36 36 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGACATG............................................................................................... 23 1 1 36.00 36 30 6 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATCC..................................................... 24 2 1 36.00 36 36 0 0 0 0 0
...............................................................................................TACTACAGTGATTTTCCTTTAT....................................................... 22 2 1 36.00 36 36 0 0 0 0 0
......................................................AAAGGAACGATGGTTGTGATAT................................................................................................ 22 1 1 36.00 36 35 1 0 0 0 0
...............................................................................................TATCACAGTGCTTTTCCTTTAC....................................................... 22 2 1 35.00 35 34 1 0 0 0 0
......................................................AAAGGAACGACCGTTGTGATAT................................................................................................ 22 1 1 35.00 35 35 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTGT....................................................... 22 1 1 34.00 34 27 7 0 0 0 0
...............................................................................................TGTCACAGTGCTTTTCCTTTAT....................................................... 22 2 1 34.00 34 34 0 0 0 0 0
......................................................AAAGGAACGATCGTTATGATATG............................................................................................... 23 1 1 34.00 34 29 5 0 0 0 0
........................................................AAGAACGATCGTTGTGATATG............................................................................................... 21 1 1 34.00 34 34 0 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATAC................................................................................................ 22 2 1 33.00 33 33 0 0 0 0 0
........................................................AGGAACGATCGTTGTGATATG............................................................................................... 21 0 1 33.00 33 32 0 1 0 0 0
..............................................................................................CTATCACAGTGATTTTCCTTTATC...................................................... 24 2 1 33.00 33 33 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAAAT................................................................................................ 22 1 1 33.00 33 33 0 0 0 0 0
...............................................................................................TATCACGGTGATTTTCCTTTATA...................................................... 23 1 1 33.00 33 30 3 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATGC.............................................................................................. 24 1 1 33.00 33 33 0 0 0 0 0
......................................................AAAGGCACGATCGTTGTGATATG............................................................................................... 23 1 1 33.00 33 22 10 0 0 1 0
...............................................................................................TATCACAGTGATCTTCCTTTAT....................................................... 22 1 1 32.00 32 30 2 0 0 0 0
...............................................................................................TATCACAGTGATCTTCCTTTATA...................................................... 23 1 1 32.00 32 27 5 0 0 0 0
...........................................................................................GATCTATCACAGTGATTTTCCTTTATA...................................................... 27 3 1 32.00 32 32 0 0 0 0 0
...............................................................................................TGTTACAGTGATTTTCCTTTAT....................................................... 22 2 2 31.50 63 63 0 0 0 0 0
...............................................................................................TGTCACAGTGCTTTTCCTTTATA...................................................... 23 2 1 31.00 31 31 0 0 0 0 0
......................................................AAAGGAACGATCGATGTGATAT................................................................................................ 22 1 1 31.00 31 28 3 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATA................................................................................................. 21 1 1 31.00 31 30 1 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATT...................................................... 22 1 1 30.00 30 30 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCCTTATA...................................................... 23 1 1 30.00 30 27 3 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTCTATA...................................................... 23 1 1 30.00 30 30 0 0 0 0 0
................................................................................................AGCACAGTGATTTTCCTTTATC...................................................... 22 2 1 30.00 30 30 0 0 0 0 0
......................................................AAAGGAACGTTCGTTGTGATAT................................................................................................ 22 1 1 29.00 29 28 1 0 0 0 0
......................................................AAAGGAACGATCTTTGTGATA................................................................................................. 21 1 1 29.00 29 29 0 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATAC..................................................... 23 1 1 29.00 29 29 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTCAT....................................................... 22 1 1 28.00 28 27 1 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATTC.............................................................................................. 24 1 1 28.00 28 21 7 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTA........................................................ 21 1 1 28.00 28 28 0 0 0 0 0
..........................................................AAACGATCGTTGTGATATG............................................................................................... 19 1 1 28.00 28 28 0 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATAT..................................................... 23 1 1 28.00 28 25 3 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTAA....................................................... 22 1 1 28.00 28 28 0 0 0 0 0
......................................................AAAGGAATGATCGTTGTGATAT................................................................................................ 22 1 1 27.00 27 19 8 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATACC............................................................................................... 23 2 1 27.00 27 26 1 0 0 0 0
......................................................AAAGGAACGATCGTTATGATAT................................................................................................ 22 1 1 27.00 27 24 3 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTTT....................................................... 22 1 1 27.00 27 27 0 0 0 0 0
...............................................................................................TATCACAGTGATTCTCCTTTAT....................................................... 22 1 1 27.00 27 18 9 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCGTTATA...................................................... 23 1 1 26.00 26 24 2 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATAC................................................................................................ 22 2 1 26.00 26 26 0 0 0 0 0
...............................................................................................TATCACACTGATTTTCCTTTATA...................................................... 23 1 1 26.00 26 26 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATATC.................................................... 25 1 1 26.00 26 25 1 0 0 0 0
...............................................................................................TATCACAGTGATTTCCCTTTATA...................................................... 23 1 1 26.00 26 23 3 0 0 0 0
................................................................................................AGCACAGTGATTTTCCTTTATAA..................................................... 23 2 1 25.00 25 25 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGG.............................................................................................. 24 1 1 25.00 25 24 1 0 0 0 0
......................................................AAAGGAACGCTCGTTGTGATATG............................................................................................... 23 1 1 25.00 25 9 16 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTCTAT....................................................... 22 1 1 25.00 25 23 2 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTCT....................................................... 22 1 1 25.00 25 0 25 0 0 0 0
...............................................................................................TATCACAGAGATTTTCCTTTAT....................................................... 22 1 1 24.00 24 19 5 0 0 0 0
................................................................................................TGCACAGTGATTTTCCTTTAT....................................................... 21 2 1 24.00 24 24 0 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTATAA..................................................... 24 2 1 24.00 24 24 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTT.......................................................... 19 0 1 24.00 24 23 1 0 0 0 0
...............................................................................................TACTACAGTGATTTTCCTTTATA...................................................... 23 2 1 24.00 24 24 0 0 0 0 0
......................................................AAAGGAACGATCGTCGTGATAT................................................................................................ 22 1 1 24.00 24 23 1 0 0 0 0
...............................................................................................TATCACAGTGAGTTTCCTTTAT....................................................... 22 1 1 24.00 24 8 15 1 0 0 0
...............................................................................................TATCACAGTAATTTTCCTTTATA...................................................... 23 1 1 24.00 24 23 1 0 0 0 0
...............................................................................................TATCACAATGATTTTCCTTTAT....................................................... 22 1 1 24.00 24 19 5 0 0 0 0
...............................................................................................TATCACAGGGATTTTCCTTTAT....................................................... 22 1 1 23.00 23 18 5 0 0 0 0
......................................................AAAGGGACGATCGTTGTGATA................................................................................................. 21 1 1 23.00 23 23 0 0 0 0 0
...............................................................................................TATCACAGTGATTTCCCTTTAT....................................................... 22 1 1 23.00 23 21 2 0 0 0 0
................................................................................................AGAACAGTGATTTTCCTTTATA...................................................... 22 2 1 23.00 23 23 0 0 0 0 0
...............................................................................................CATCACAGTGATTTTCCTTTAC....................................................... 22 2 1 23.00 23 23 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAAG............................................................................................... 23 1 1 23.00 23 20 3 0 0 0 0
................................................................................................ATCACATTGATTTTCCTTTAT....................................................... 21 1 1 23.00 23 23 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTCATA...................................................... 23 1 1 22.00 22 20 2 0 0 0 0
...............................................................................................TATCACAGTGGTTTTCCTTTATA...................................................... 23 1 1 22.00 22 21 1 0 0 0 0
......................................................AGAGGAACGATCTTTGTGATAT................................................................................................ 22 2 1 22.00 22 22 0 0 0 0 0
............................................................................................ATCTATCACAGTGATTTTCCTTTAT....................................................... 25 2 1 22.00 22 22 0 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTATAA..................................................... 24 2 1 22.00 22 22 0 0 0 0 0
......................................................AAAGGAACGGTCGTTGTGATAT................................................................................................ 22 1 1 21.00 21 16 5 0 0 0 0
......................................................AGATGAACGATCGTTGTGATATG............................................................................................... 23 2 1 21.00 21 21 0 0 0 0 0
..............................................................................................CTATCACAGTGATTTTCCTTTA........................................................ 22 1 1 21.00 21 21 0 0 0 0 0
......................................................AAAGGAACGATCATTGTGATAT................................................................................................ 22 1 1 21.00 21 19 2 0 0 0 0
......................................................AAAGGAACGATCGTTGATA................................................................................................... 19 2 1 21.00 21 21 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTACTTTAT....................................................... 22 1 1 21.00 21 5 16 0 0 0 0
.......................................................AAGGAACGATCGTTGTGATA................................................................................................. 20 0 1 21.00 21 21 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATT................................................................................................. 21 1 1 21.00 21 19 1 1 0 0 0
......................................................AAAGGAACGATCGTTGTGACAT................................................................................................ 22 1 1 21.00 21 20 1 0 0 0 0
......................................................AAAGGAACGATCGTTGATATG................................................................................................. 21 3 2 21.00 42 42 0 0 0 0 0
...............................................................................................TATCACAGAGATTTTCCTTTATA...................................................... 23 1 1 21.00 21 17 4 0 0 0 0
................................................................................................AGAACAGTGATTTTCCTTTAT....................................................... 21 2 1 21.00 21 21 0 0 0 0 0
...................................ATGAATGGGCCATGCGCTA...................................................................................................................... 19 0 1 21.00 21 16 5 0 0 0 0
...............................................................................................TAGCACAGTGATTTTCCTTTAT....................................................... 22 1 1 20.00 20 12 7 0 0 0 1
................................................................................................ATGACAGTGATTTTCCTTTATA...................................................... 22 1 1 20.00 20 20 0 0 0 0 0
................................................................................................ATCACAGAGATTTTCCTTTAT....................................................... 21 1 1 20.00 20 19 1 0 0 0 0
......................................................AACGGAACGATCGTTGTGATA................................................................................................. 21 1 1 20.00 20 20 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAAC.................................................... 25 1 1 20.00 20 20 0 0 0 0 0
..................................................GATCAAAGGAACGATCGTTGTGATATG............................................................................................... 27 2 1 20.00 20 20 0 0 0 0 0

Anti-sense strand reads

CTTTTCAAAAATACTTTCAAGTTTTACGTTTGAGCTACTTACCCGGTACGCGATTTTCCTTGCTAGCAACACTATACGCAATTAGCTGGCAATGTATAGTGTCACTAAAAGGAAATATCGCGCACGTCAGGGGGTCTGATGTTATACTTACACTTATAAATATTCACATATA

****************************************..((((((((((((((((((((.(((((((((((((((...((((.....)))))))))))))))))))))))))).)))))))))..)))).*************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo
.............................................................................................GTATAGTGTTGCTACAAGGAAA......................................................... 22 3 2 18.50 37 37
..............................................................................................TATAGTGTTGCTACAAGGAAA......................................................... 21 3 3 4.00 12 12
...............................................................................................ATAGTGTTGCTACAAGGAAA......................................................... 20 3 3 1.00 3 3
.............................................................................................GTATAGTGTTGCTAAAAGGAAA......................................................... 22 2 2 0.50 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20936414-20936585 - dmo-mir-5 Known_mirbase GAAA-----------------------------------------AGT-TTTTATGAAAGTT--CAA--AATGCAAACTCG---ATGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATC-GACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCA------GTCCCCCAGACTACAATA-----T-GAATGTGAA----TA------TTTATAA--------GTGTATAT
droVir3 scaffold_12875:4112431-4112587 + dvi-mir-5 Known_mirbase GATATTCTC--------------------------------GTATA----------------CTATA--T-------------ATAAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATT-AACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC------AGCCCGTAAAGCAACAC-C-----A-C--ATA-----CGATCTA---TATCCAT--------GTCTATAT
droGri2 scaffold_5621:3102-3260 + dgr-mir-5-2 Known_mirbase TATA-----------------------------------------TGT-G----------TT----AAAG-------------TCGTTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCT--C--TGCCCAAAACTCAACTA-ACCAGTGTTGAATAA----CTA-------GTGAAGA------GTGCTTA--C
droWil2 scf2_1100000004514:1651430-1651583 - dwi-mir-5 Known_mirbase TAGCA--AA--------------------------------GTTCA--------------------A--GTTTCATCGTCGTTTTTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATT-CACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTTCTGTCCAATA--TATCAA-C-----A-A---T---ATCC-AGC---A-----------------------A
dp5 3:12677191-12677362 - dps-mir-5 Known_mirbase CACAT--CC---------------------ATCCCAGTGTCATTGATTAG----------TTCCCAA--C-------------TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--CGCCCACAGCCACACAT-G-----G-GAAACGAAA----CGCTCAGCGGTGG-----------------A
droPer2 scaffold_2:8906289-8906481 + dpe-mir-5 Known_mirbase ACCAA--CACCCATACCCACCCTCACATCCATCCCAGTGTCATTGATTAG----------CTCCCAA--C-------------TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--CGCCCACAGCCACACAT-G-----G-GAAACGAAA----CACTCAGCGATGG-----------------A
droAna3 scaffold_13266:9731647-9731801 + dan-mir-5 Known_mirbase GAAAA--AA--------------------------------A----AT-G----------TA--AAA--T-------------ATTCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGCAG-T--TGTCCAAAATGCATCAA-A-----A-A---TAA----CGAGTTA---GGTGACA--------G--GACTC
droBip1 scf7180000396427:874592-874756 + AAAAA-------------------------------------TTAAAT-A----AAAAAGTG--AAA--T-------------ATCCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGTCA-T--TGTCCAAAATTCATCAG-A-----G-A---------TC------GA-GTTAGTGACTTGAA-GGAGTCGC
droKik1 scf7180000302679:89052-89202 - ACCA-----------------------------------------AGT-G----------ATATCTCAAG-------------CTAACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-TTC-C-CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTTC-A--AGTCCAAGATTCAACGA-T-----T-GA---------TC------A-GTTCTAA--------GGTTCTAT
droFic1 scf7180000454039:847765-847911 - AATA---AA--------------------------------GTTTAGT-G----------ATTCCTA--A-------------AGTACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTT-A---GTTACATATCACAGTGATTTTCCTTTATAACGCATGTCG-T--TGTCCAAAGCTCATCAA-A-----G-GAAAAAACA------------------------------TACTT
droEle1 scf7180000491201:2013698-2013842 - AAAA----A--------------------------------GTTGAGT-G----------AACCCCG--C-------------TTACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATC-C---TTAACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--AGCCCAAAACTCATCGATG-----G-GAAATACAATCC--------------------------------
droRho1 scf7180000780066:73911-74059 + AAAAC--AA--------------------------------GTTGAGT-G----------ATCCCTA--C-------------ATTTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--AGCCCAATACTCATCGA-G-----G-GAAATAAGATTC------GA-----------------------A
droBia1 scf7180000302143:3059527-3059669 - CAA--------------------------------------TTTGAGT-G----------ATCCCCA--C-------------GTATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCATGA--AGCCCAAAGCTCATCAA-G-----G-GAAATACCATCC--------------------------------
droTak1 scf7180000415384:84307-84446 + GAATT--AA--------------------------------GTTGAGT-G----------ATCCCAG--C-------------ATAACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC-C---GTTACATATCACAGTGATTTTCCTTTATAACGCATGTCTTA--AGCCCCAAAAACATCAA-G-----G-GATAT---------------------------------------
droEug1 scf7180000409474:2397110-2397229 + CAAA-------------------------------------------------------------------------------ACTACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTC-TTT-T---GTTACATATCACAGTGATTTTCCTTTGTAACGCATGTCTAA--TGCCCACTATTCATCAA-G-----G-TTA----------------------------------------T
dm3 chr2R:15548606-15548763 - dme-mir-5 Known_mirbase G-----------------------------------------TTAAGT-G----------ATCCCCA--A-------------ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTT-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAA--AGTCCACAACTCATCAA-G-----G-AAAATGAAAGTC------AAAGTTGGCA--------GCTTACTT
droSim2 2r:16195879-16196034 - dsi-mir-5 Known_mirbase G-----------------------------------------TTAAGT-T----------ATCACCA--A-------------ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC-C----CAACATATCACAGTGATTTTCCTTTATATCGCATGTTAAA--AGTCCACAATTCATCAA-G-----G-AAAATGAAAGCC------AA-GTTGGCA--------GCTTACTA
droSec2 scaffold_1:13063337-13063501 - dse-mir-5 Known_mirbase GGAAATCAA--------------------------------GTTAAGT-G----------ATCCCCA--A-------------ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC-C---CGAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAA--AGTCCACAATTCATCAA-G-----G-AAAATTA-AGCC------AA-GTTGGCA--------GCTTACTA
droYak3 2R:13624028-13624170 + dya-mir-5 Known_mirbase G-----------------------------------------TTAAGT-G----------TTCCCCC--A-------------ATTTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGTACAA--AGTCCACAACTCATCAA-G-----G-GAAATGAAAGCC------AA-----------------------A
droEre2 scaffold_4845:9748864-9749014 - der-mir-5 Known_mirbase G-----------------------------------------TTAAGT-G----------ATCCCCT--A-------------ATTTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGTAAAA--AGTCCAAAACTCATCAATG-----G-GAAATGAAAGCC------AAAGTTGCC----------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAAA-----------------------------------------AGT-TTTTATGAAAGTT--CAA--AATGCAAACTCG---ATGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATC-GACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCA------GTCCCCCAGACTACAATA-----T-GAATGTGAA----TA------TTTATAA--------GTGTATATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................231103385.00103385208896689444411
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................22163878.006387823480521590461
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................22162994.006299462770316020410
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................23157007.00570076209100549100
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................2117688.00768803760173110
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................2115487.00548712900051960
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................2214838.00483801060047320
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................2214143.004143030041400
..................................................................................................................................................TATCACAGTGATTTTCCTTTAC.....................................................................................2213555.0035550100035450
..................................................................................................................................................TATCACAGTGATTTTCCTTTATC....................................................................................2311942.0019422240019160
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................2411743.0017430810016620
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................2011261.00126122270210228
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................2111095.0010951300010640
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................2311093.0010930811010110
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................2411051.0010511108009420
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................241829.00829097007284
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................241578.00578038105390
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................231468.00468029004390
...................................................................................................................................................ATCACAGTGATTTTCCTTTAC.....................................................................................211292.0029200002920
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................211260.00260011002490
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................221256.0025614002510
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................241188.00188027001610
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................231177.0017705001720
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAC...................................................................................241173.0017301001720
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................201173.00173016001570
...................................................................................................................................................ATCACAGTGATTTTCCTTTATC....................................................................................221160.0016010001590
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................211142.0014200001420
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................181132.0013205700750
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................231130.00130013001170
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................201130.0013000001300
.......................................................................................................AAAGGAACGATCGTTGTGATATGTC.............................................................................................................................251113.0011313200800
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................231110.0011005001050
.....................................................................................................................................................CACAGTGATTTTCCTTTAT.....................................................................................191108.0010801001070
.....................................................................................................................................................CACAGTGATTTTCCTTTATA....................................................................................201103.0010300001030
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................201101.0010134000580
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................19195.009502700680
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................19181.00810210780
.......................................................................................................................................................CAGTGATTTTCCTTTATA....................................................................................18179.00790000790
...................................................................................................................................................ATCACAGTGATTTTCCTTTA......................................................................................20179.00790300760
..................................................................................................................................................TATCACAGTGATTTTCCTTTATG....................................................................................23153.00530100520
....................................................................................................................................................TCACAGTGATTTTCCTTTATAA...................................................................................22152.00520300490
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25147.004702600210
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA..................................................................................25145.00450300420
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................22140.00400100390
..................................................................................................................................................TATCACAGTGATTTTCCTTTATCC...................................................................................24136.00360000360
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................21133.00331000320
...................................................................................................................................................ATCACAGTGATTTTCCTTTATT....................................................................................22130.00300000300
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAC...................................................................................23129.00290000290
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAT...................................................................................23128.00280300250
..................................................................................................................................................TATCACAGTGATTTTCCTTTAA.....................................................................................22128.00280000280
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................23127.00270100260
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................24125.00250100240
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................19124.00240100230
........................................................................................................AAGGAACGATCGTTGTGATA.................................................................................................................................20121.00210000210
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................21121.00211100190
....................................................................................ATGAATGGGCCATGCGCTA......................................................................................................................................................19121.00210500160
droVir3
GATATTCTC--------------------------------GTATA----------------CTATA--T-------------ATAAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATT-AACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC------AGCCCGTAAAGCAACAC-C-----A-C--ATA-----CGATCTA---TATCCAT--------GTCTATATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................23166177.006617729701213801360121122029101040251241043292641675411536188215704310102704298290939452967244945032170358719711171144510649120298932204764024104312426155914761861585499280327
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................22111567.0011567325653522350012011143104024643023141196041071963021921134131971283362382664222975734023183462591101269500211101010312332432512529816216389128
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................2116493.00649323341737010000000400001000100110001061122017220016374252943973263004942765173462302811922109077120000302413273242313141343953
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................2014656.0046561135214900030620011000001000000010010002220152129282498819116320833136820730624417132183466130001615190011121748396671
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................2312561.00256100592200000000070000000020010011118401122474072520000224820262030162912121160002220900001532000000015111231
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................2212463.00246302910290000000001732551141140103115442781871478800001148172013292145241726170001212341000151013340000003553421011
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................2411002.0010021102540000000001000000000000000000004111450020019123335376144805134383600012218000004911000220141118810
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................231460.00460000113000000000100000000000000000000137200000810101711310237686000121660000041400000043200
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................221295.00295000100000000000000000000000000000000000000006216710251432281525220007630000000000000001102
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................221282.00282000279000000000000000000000000000000010000000000000000000000020000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................241257.00257200590000000000000000001000000000201361000005110106183141248800024600000541300000075946
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................211173.001730018600000000011000000000000000001062479000001001102124100004120000000100000041110
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................241164.001640001700000000000000100100000000001101725291600000301111220111000370000020500000007513
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................221129.00129000460000000010000000000000010000305111719000002000110100000000140000000500000020000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATC....................................................................................231129.00129000730000000000000000000000000100000000000002000033732430002530000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................231127.0012701032010000001000000000000000000000112200000516455311412200019160100000100000000000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................211105.001050001200000000000000000000000000000000140001414106246173140000230000000800000062211
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21197.0097000360000000000000000001000000000102132000006550320344110002150000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................19178.007802070000000000000000000000001000001100000104662152335431001340000010200000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................23177.0077020130000000000000000000000000000201252000002252411112211000730200001300000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................24175.007500057000000000100000000000000000000100300000001000002110000170000000000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAC.....................................................................................22157.005700056000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................AAAAGGAACGATCGTTGTGATATG...............................................................................................................................24145.004500000000000000000000000000000000000000000003508113152203000200000000000000000000
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................22140.004000015000000000100000000000000000000233200000002102200200000110000001100000001000
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................20138.003812027000000000000000000000000000000000000000000001102001010200000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25134.00340003000000000000000000000000000000002000000012233321130000420000000000000011000
.....................................................................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................................................23131.00310002000000000000000000000000000000010000000202210130210000110000000800000021100
.......................................................................................................AAAGGAACGATCGTTGTGATATGTC.............................................................................................................................25128.00280005000000000000000000000000000001000000000101002223110000360000000000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20125.002500011000000000000000001100010000000102300000000000000000000050000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATC.................................................................................................................................21122.00220104000000000000000000000000000000000000000100220202001000520000000000000000000
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................21117.00170005000000000000000000000000000020021000000000000000110000000000000300000020000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................20116.00160016000000000000000000000000010010001100000000000000000000010000001000000001110
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................24116.00160001000000000000000000000000000010042300000001001010000000010000000000000000100
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAC...................................................................................24113.00130006000000000000000000000000000000000000000000000111000000400000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAT.............................................................................................................................25113.00130000000000000000000000000000000000000000000001001121210000200000000000000100100
.......................................................................................................AAAGGAACGATCGTTGTGATATGTCC............................................................................................................................26112.00120000000000000000000000000000000000000000000000200002011000600000000000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA..................................................................................25112.00120003000000000000000000000000000000121100000000000000001000000000001000000002000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATCC...................................................................................24112.00120016000000000000000000000000000000000000000000000001100000300000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGG...................................................................................................................................19111.00110100000000000000000000000000000000000000000101100002010000400000000000000000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAC.....................................................................................21111.00110009000000000000000000000000000000101000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................23110.00100003000000000000000000000000000000000000000011001110000000000000000000000000101
.......................................................................................................AAAGGAACGATCGTTG......................................................................................................................................16110.00100000000000000000000000000000000000000000000012011000011000300000000000000000000
.........................................................................................................AGGAACGATCGTTGTGATA.................................................................................................................................19110.00100000000000000000000000000000000000000000000110100000103000010000010000000010000
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................19110.00100000000000000000000000000000000000013100000001000201100000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................2219.0090001000000000000000000000000000000000000000000100001000000310000000000000011000
....................................................................................TAAATTGGGTCATGCTCTA......................................................................................................................................................1919.0090000000000000000000000000000000000000000001120001000000000000000000100000020010
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................2118.0080001000000000000000000000000000000000000000001010010000000310000000000000000000
......................................................................................................AAAAGGAACGATCGTTGTGAT..................................................................................................................................2118.0080000000000000000000000000000000000000000000000001041100000100000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAA.............................................................................................................................2518.0080000000000000000000000000000000000001000000000001010000000020000000000000011100
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................1918.0080002000000000000000000000000000000003100000000000000000000020000000000000000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................2318.0080000000000000100000000000000000000002200000010100000000000000000000000000001000
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................1818.0080003010000000000000000000000000000000100000000000000000000020000000100000000000
.........................................................................................................AGGAACGATCGTTGTGAT..................................................................................................................................1817.0070000000000000000000000000000000000100000001011001000000000000000000000000000101
......................................................................................................AAAAGGAACGATCGTTGTGATA.................................................................................................................................2217.0070000000000000000000000000000000000000000000001001112100000000000000000000000000
....................................................................................................................................................TCACAGTGATTTTCCTTTATAA...................................................................................2217.0070003000000000000000000000000000000000000000000000000000000010000000100000011000
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................2417.0070004000000000000000000000000000000000000000000000000011000100000000000000000000
..............................................................................................................................CGTTC-ATT-AACCGTTACA...........................................................................................................1816.0060000000000000000000000000000000010111000000000000000000000020000000000000000000
......................................................................................................AAAAGGAACGATCGTTGTGATAT................................................................................................................................2316.0060000000000000000000000000000000000000000000001201010001000000000000000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................2316.0060004000000000000000000000000000000000000000001000000000000100000000000000000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATC....................................................................................2216.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................1816.0060000000000000100000000000000000000110000000000001000000000110000000000000000000
...........................................................................................................GAACGATCGTTGTGATATG...............................................................................................................................1915.0050000000000000000000000000000000000001000000000000000000000100000000000000011010
.......................................................................................................AAAGGAACGATCGTTGTGATATTT..............................................................................................................................2415.0050002000000000000000000000000000000000000000000000000000000120000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................2115.0050002000000000000000000000000000000000000000000001001000000000000000000000010000
.........................................................................................................AGGAACGATCGTTGTGATATGT..............................................................................................................................2215.0050003000000000000000000000000000000000000000000010010000000000000000000000000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTA......................................................................................2015.0050000000000000000000000000000000000010100000010001000010000000000000000000000000
..........................................................................................................GGAACGATCGTTGTGATATG...............................................................................................................................2014.0040001000000000000000000000000000000000000000110000000000000000000000000000010000
.....................................................................................................................................................CACAGTGATTTTCCTTTATA....................................................................................2014.0040002000000000000000000000000000000011000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTTC............................................................................................................................2614.0040002000000000000000000000000000000000000000000000000000000200000000000000000000
droGri2
TATA-----------------------------------------TGT-G----------TT----AAAG-------------TCGTTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCT--C--TGCCCAAAACTCAACTA-ACCAGTGTTGAATAA----CTA-------GTGAAGA------GTGCTTA--CSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................2325.001055
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................2222.00440
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................2221.50321
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................2121.50330
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................2020.50101
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................2120.50101
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................2420.50101
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................2320.50110
droWil2
TAGCA--AA--------------------------------GTTCA--------------------A--GTTTCATCGTCGTTTTTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATT-CACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTTCTGTCCAATA--TATCAA-C-----A-A---T---ATCC-AGC---A-----------------------ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................23151810.005181038332351336101
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................22123023.002302356158722698104
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................22111546.0011546019601130842
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................2314116.00411601150399110
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................2112328.00232841100226413
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................2011803.0018038868166536
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................2111381.001381030013465
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................221408.0040801603911
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................231351.003511013490
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................241283.0028301002730
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................241276.002761602690
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................241275.002750502700
....................................................................................TTTTCTGGGCCATTCGCTA......................................................................................................................................................191181.001810401770
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................201140.001400101390
..................................................................................................................................................TATCACAGTGATTTTCCT.........................................................................................181117.001170001161
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................23182.0082110800
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................22179.00790370420
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21175.0075020721
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................23162.0062010610
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................19149.0049100480
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................24148.0048000480
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................22147.0047001460
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................18146.0046010450
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................24144.0044010430
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................21131.00310150151
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................22130.0030000300
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................23127.0027000270
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25126.0026000260
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................18124.0024000240
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................20122.0022010210
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................21120.0020020180
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA..................................................................................25119.0019000190
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................22114.0014000140
..................................................................................................................................................TATCACAGTGATTTTCCTTTAC.....................................................................................22114.0014000140
....................................................................................................................................................TCACAGTGATTTTCCTTTATAA...................................................................................22113.0013010120
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................23113.0013000130
...................................................................................TTTTTCTGGGCCATTCGCTA......................................................................................................................................................20113.0013000130
.......................................................................................................AAAGGAACGATCGTTGTGATATGAA.............................................................................................................................25112.0012000120
....................................................................................................................................................TCACAGTGATTTTCCTTTATAT...................................................................................22112.0012000120
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................23111.0011000110
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................21110.001005050
..................................................................................................................................................TATCACAGTGATTTTCCTTTT......................................................................................21110.0010000100
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................1919.00900090
...................................................................................................................................................ATCACAGTGATTTTCCTTT.......................................................................................1918.00800080
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................1917.00700070
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................2416.00600060
..............................................................................................................................CGTTAGATT-CACCGTTATA...........................................................................................................1916.00600060
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................2116.00600060
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................1815.00501040
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAG...................................................................................2415.00500050
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................2015.00520021
.......................................................................................................................................................CAGTGATTTTCCTTTATA....................................................................................1815.00500050
..................................................................................................................................................TATCACAGTGATTTTCCTTTAA.....................................................................................2215.00502030
..................................................................................................................................................TATCACAGTGATTTTCCTTAT......................................................................................2115.00501040
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAT...................................................................................2314.00400040
...................................................................................................................................................ATCACAGTGATTTTCCTTTA......................................................................................2014.00400040
.......................................................................................................AAAGGAACGATCGTTGTGATATGTA.............................................................................................................................2514.00400040
.......................................................................................................AAAGGAACGATCGTTGTGATATGTC.............................................................................................................................2514.00400040
.....................................................................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................................................2313.00300030
.......................................................................................................AAAGGAACGATCGTTGTT....................................................................................................................................1813.00300030
.......................................................................................................AAAGGAACGATCGTTGTGT...................................................................................................................................1913.00300030
..................................................................................TTTTTTCTGGGCCATTCGCTA......................................................................................................................................................2113.00300030
..................................................................................................................................................TATCACAGTGATTTTCCTTTATG....................................................................................2313.00300030
.......................................................................................................AAAGGAACGATCGTTGTGATTG................................................................................................................................2213.00300030
.......................................................................................................AAAGGAACGATCGTTGTGATC.................................................................................................................................2113.00310020
..........................................................................................................GGAACGATCGTTGTGATATG...............................................................................................................................2012.00211000
.......................................................................................................AAAGGAACGATCGTTGTGATATAA..............................................................................................................................2412.00200020
dp5
CACAT--CC---------------------ATCCCAGTGTCATTGATTAG----------TTCCCAA--C-------------TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--CGCCCACAGCCACACAT-G-----G-GAAACGAAA----CGCTCAGCGGTGG-----------------ASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................23120861.00208612264210780287312423808
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................22111323.0011323041978584304100010
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................23110758.0010758041884614187200030
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................2217060.00706017084499201796050238
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................2111461.0014610928840454000292
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................221783.00783055589113800000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAC.....................................................................................221780.00780007770300000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................211762.00762041524019600001
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................221640.00640016342300000
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................201598.005982262740265170149
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................241570.0057008938319500020
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................221268.002680236250300040
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................241260.0026001615808500010
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................231224.0022411012318800010
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................211202.0020201415313200020
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................241139.001390012201700000
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................241113.001130177002500010
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................231107.00107018001801070
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................21182.008207650100000
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................22178.0078024303300000
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................20164.006400640000000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20160.006002805000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAC.....................................................................................21160.006000590100000
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................21159.0059054101300000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................19142.0042022101300033
....................................................................................TCCTAGGGGCCATACGCTA......................................................................................................................................................19140.004004403200000
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................18138.003800203600000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAC...................................................................................24137.003700370000000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................23136.0036002101500000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................20135.0035041601500000
....................................................................................................................................................TCACAGTGATTTTCCTTTATAA...................................................................................22131.0031021701200000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................21130.003002370000000
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................23129.002902180900000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................23128.002803170800000
.....................................................................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................................................23126.0026021101300000
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................19126.002600402200000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................24124.0024021101100000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................23121.002100180300000
...................................................................................................................................................ATCACAGTGATTTTCCTTTA......................................................................................20117.001704130000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATC....................................................................................23115.001501101300000
...................................................................................TTCCTAGGGGCCATACGCTA......................................................................................................................................................20115.001500101400000
........................................................................................................AAGGAACGATCGTTGTGATA.................................................................................................................................20114.001401130000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25114.00140040800020
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................22112.00120150300030
........................................................................................................AAGGAACGATCGTTGTGATATGT..............................................................................................................................23111.00110920000000
..........................................................................................................GGAACGATCGTTGTGATATG...............................................................................................................................20110.00100820000000
.....................................................................................................TAAAAGGAACGATCGTTGTGAC..................................................................................................................................22110.001000100000000
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................21110.00100160300000
......................................................................................................AAAAGGAACGATCGTTGTGATAT................................................................................................................................2319.0090450000000
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................1919.0090070200000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA..................................................................................2519.0090270000000
....................................................................................................................................................TCACAGTGATTTTCCTTTATAGC..................................................................................2318.0080050300000
..................................................................................................................................................TATCACAGTGATTTTCCT.........................................................................................1818.0080030500000
............................................................................................................................TGCGTTA-ATT-CACCGTTACATA.........................................................................................................2217.0070030400000
.......................................................................................................................................................CAGTGATTTTCCTTTATA....................................................................................1817.0070060100000
.....................................................................................................................................................CACAGTGATTTTCCTTTAT.....................................................................................1917.0070300400000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATG....................................................................................2317.0070050200000
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................1816.0060110400000
.........................................................................................................AGGAACGATCGTTGTGATAT................................................................................................................................2016.0060420000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAA.....................................................................................2216.0060040200000
.....................................................................................................................................................CACAGTGATTTTCCTTTATA....................................................................................2016.0060050100000
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................2115.0050040100000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTC.............................................................................................................................2515.0050120100010
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................2415.0050140000000
.......................................................................................................AAAGGAACGATCGTTGTGATATTT..............................................................................................................................2415.0050020300000
droPer2
ACCAA--CACCCATACCCACCCTCACATCCATCCCAGTGTCATTGATTAG----------CTCCCAA--C-------------TTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATT-CACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--CGCCCACAGCCACACAT-G-----G-GAAACGAAA----CACTCAGCGATGG-----------------ASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................2217491.00749169693540826611
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................2316462.006462464568164528517
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................2116180.0061806099371133
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................2013284.00328431951613222
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................221721.007212247648121
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................241371.00371347418020
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................231353.00353641306000
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................221164.0016416003010
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................241161.0016115506000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................191125.0012511608001
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................22170.00706811000
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................20167.00676700000
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................24163.00636300000
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................23158.005842013012
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................23151.00515001000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................21146.00463340000
.....................................................................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................................................23142.00423704010
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................24139.00393602010
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................22127.00270522000
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................22127.00272142000
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................21124.00242400000
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................22123.00232300000
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................23121.00211505010
.......................................................................................................AAAGGAACGATCGTTGTGG...................................................................................................................................19120.00202000000
.......................................................................................................AAAGGAACGATCGTTGTGATAG................................................................................................................................22120.00202000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21116.0016448000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25116.00161501000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20115.00150015000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................24111.0011037010
.......................................................................................................AAAGGAACGATCGTTGTGAG..................................................................................................................................20111.00111100000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................23110.0010901000
.........................................................................................................AGGAACGATCGTTGTGATAT................................................................................................................................2019.009900000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................2119.009801000
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................1819.009009000
...........................................................................................................GAACGATCGTTGTGATAT................................................................................................................................1819.009900000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................2018.008026000
.........................................................................................................AGGAACGATCGTTGTGAT..................................................................................................................................1818.008800000
..........................................................................................................GGAACGATCGTTGTGATATG...............................................................................................................................2018.008800000
....................................................................................TCCTAGGGGCCATACGCTA......................................................................................................................................................1917.007007000
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................2116.006330000
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................1916.006006000
........................................................................................................AAGGAACGATCGTTGTGATA.................................................................................................................................2016.006600000
......................................................................................................AAAAGGAACGATCGTTGTGATAT................................................................................................................................2316.006501000
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................1815.005410000
.....................................................................................................TAAAAGGAACGATCGTTGTGATAA................................................................................................................................2415.005500000
......................................................................................................AAAAGGAACGATCGTTGTGAT..................................................................................................................................2115.005500000
..........................................................................................................GGAACGATCGTTGTGATAT................................................................................................................................1914.004400000
......................................................................................................AAAAGGAACGATCGTTGTGATA.................................................................................................................................2214.004301000
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................2113.003200001
.........................................................................................................AGGAACGATCGTTGTGATA.................................................................................................................................1913.003300000
.....................................................................................................TAAAAGGAACGATCGTTGTGA...................................................................................................................................2113.003201000
.......................................................................................................AAAGGAACGATCGTTGTGATATAA..............................................................................................................................2413.003300000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................2312.002002000
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................1912.002002000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAAA............................................................................................................................2612.002200000
........................................................................................................AAGGAACGATCGTTGTGATATGG..............................................................................................................................2312.002200000
....................................................................................................................................................TCACAGTGATTTTCCTTTATAT...................................................................................2212.002002000
..........................................................................................................GGAACGATCGTTGTGATA.................................................................................................................................1812.002200000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAG...................................................................................2412.002011000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................2312.002011000
.........................................................................................................AGGAACGATCGTTGTGATATC...............................................................................................................................2112.002200000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................2412.002011000
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................2112.002002000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAT.............................................................................................................................2512.002200000
.......................................................................................................AAAGGAACGATCGTTGTGATACT...............................................................................................................................2312.002200000
........................................................................................................AAGGAACGATCGTTGTGAT..................................................................................................................................1912.002200000
...................................................................................................................................................ATCACAGTGATTTTCCTTT.......................................................................................1911.001001000
.......................................................................................................AAAGGAACGATCGTTGTGATC.................................................................................................................................2111.001100000
droAna3
GAAAA--AA--------------------------------A----AT-G----------TA--AAA--T-------------ATTCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGCAG-T--TGTCCAAAATGCATCAA-A-----A-A---TAA----CGAGTTA---GGTGACA--------G--GACTCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................2313433.0034331402558681212013
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................2211891.001891331648199128
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................2211454.00145431114125271013
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................231721.007214059387001
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................211243.00243221720031
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................201154.001542105264116
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................211147.00147512813001
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................221117.0011701170000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAC.....................................................................................221110.0011001100000
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21164.00640613000
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................23164.006412139003
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................24164.00642556100
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................22154.00546435000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20123.0023299003
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................24123.00230194000
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................24119.00190190000
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................24117.00170133010
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................20116.00160160000
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................22113.00131030000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAC.....................................................................................21110.00100100000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................1919.009072000
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................2318.008071000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................2517.007043000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................2117.007160000
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................2117.007430000
....................................................................................TTCTAAGGACCATTCGCTA......................................................................................................................................................1916.006051000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................2316.006060000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................2016.006060000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................2315.005041000
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................1815.005031001
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................2115.005230000
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................1914.004031000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATC....................................................................................2314.004040000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAA.....................................................................................2214.004040000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................2314.004040000
.....................................................................................................................................................CACAGTGATTTTCCTTTAT.....................................................................................1914.004040000
..................................................................................................................................................TATCACAGTGATTTTCCTTC.......................................................................................2013.003030000
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................1913.003012000
.........................................................................................................AGGAACGATCGTTGTGATAT................................................................................................................................2013.003030000
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................2313.003021000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................2413.003030000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATG....................................................................................2312.002020000
.....................................................................................................................................................CACAGTGATTTTCCTTTATA....................................................................................2012.002020000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAC...................................................................................2412.002020000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTTA............................................................................................................................2612.002002000
...................................................................................................................................................ATCACAGTGATTTTCCTTTA......................................................................................2012.002011000
.......................................................................................................AAAGGAACGATCGTTGTGATATTA..............................................................................................................................2412.002002000
.......................................................................................................AAAGGAACGATCGTTGTGATAG................................................................................................................................2212.002002000
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................2212.002020000
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................1812.002002000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAT.............................................................................................................................2512.002000002
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................2212.002011000
...................................................................................................................................................ATCACAGTGATTTTCCTTT.......................................................................................1912.002110000
....................................................................................................................................................TCACAGTGATTTTCCTTTATAA...................................................................................2212.002020000
..................................................................................................................................................TATCACAGTGATTTTCCTTTGC.....................................................................................2211.001010000
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................2111.001000100
...................................................................................................................................................ATCACAGTGATTTTCCTTTATATT..................................................................................2411.001010000
.....................................................................T-------------ATTCTAAGGACCATTCGCTA......................................................................................................................................................2111.001010000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATT....................................................................................2211.001010000
..................................................................................................................................................TATCACAGTGATTTTCCTTTC......................................................................................2111.001001000
droBip1
AAAAA-------------------------------------TTAAAT-A----AAAAAGTG--AAA--T-------------ATCCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATC-CCTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGTCA-T--TGTCCAAAATTCATCAG-A-----G-A---------TC------GA-GTTAGTGACTTGAA-GGAGTCGCSizeHit CountTotal NormTotal
No Reads
droKik1
ACCA-----------------------------------------AGT-G----------ATATCTCAAG-------------CTAACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-TTC-C-CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTTC-A--AGTCCAAGATTCAACGA-T-----T-GA---------TC------A-GTTCTAA--------GGTTCTATSizeHit CountTotal NormTotal
No Reads
droFic1
AATA---AA--------------------------------GTTTAGT-G----------ATTCCTA--A-------------AGTACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTT-A---GTTACATATCACAGTGATTTTCCTTTATAACGCATGTCG-T--TGTCCAAAGCTCATCAA-A-----G-GAAAAAACA------------------------------TACTTSizeHit CountTotal NormTotal
No Reads
droEle1
AAAA----A--------------------------------GTTGAGT-G----------AACCCCG--C-------------TTACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATC-C---TTAACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--AGCCCAAAACTCATCGATG-----G-GAAATACAATCC--------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAAC--AA--------------------------------GTTGAGT-G----------ATCCCTA--C-------------ATTTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCT-G--AGCCCAATACTCATCGA-G-----G-GAAATAAGATTC------GA-----------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
CAA--------------------------------------TTTGAGT-G----------ATCCCCA--C-------------GTATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC-C---GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGCATGA--AGCCCAAAGCTCATCAA-G-----G-GAAATACCATCC--------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAATT--AA--------------------------------GTTGAGT-G----------ATCCCAG--C-------------ATAACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC-C---GTTACATATCACAGTGATTTTCCTTTATAACGCATGTCTTA--AGCCCCAAAAACATCAA-G-----G-GATAT---------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAAA-------------------------------------------------------------------------------ACTACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTC-TTT-T---GTTACATATCACAGTGATTTTCCTTTGTAACGCATGTCTAA--TGCCCACTATTCATCAA-G-----G-TTA----------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
G-----------------------------------------TTAAGT-G----------ATCCCCA--A-------------ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTT-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAA--AGTCCACAACTCATCAA-G-----G-AAAATGAAAGTC------AAAGTTGGCA--------GCTTACTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................2311000024.0010000240000901821884576116301200000040800820100000160193341410313501291331312123283000000000000000000000000310002855254128050921826560333216124120292013211110140114164381100298013111308391201099320100000000317008361651676532916740257211326171960291844303132101170961026570110091106193161172122042757710201068411285361256823090001626134323717341362717439223715962172162713000002114310650822047323056732361729321051383712937514337201744291892317691515232238192625671914625156684134716100361322331910751721781201532184255710251163817812521113750724101643111010240
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................221136122.001361220000315486131818440100000000250023010000010260311018160215434010460270000000000000000000001533014815163157326372793224694121511632119385701311313013500015742061680032000110010000000003200394198921522265396804151118471132010120060021440111024110516225615002207317411000106980310415912522400036201017208122315523134361563139114534652283000044243866322250215214010055801140520547304643522243322164101277101371110118864342137322613504124215441183334523424716910822278146110136123681264828107316111660
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................23147228.004722800002052527178241000000000000001020051101390000000000000002110003000000000000000000010111123512521450726201220810411310400933859031820631091119548845030350003510000700000000000243658749103356300010000000000000000153809429130503015100010310001000000000000000000000510000396512120183961788150110000028718910000000006001021910000000000101001000301100001010146811741140030100001632101010000100002028381101100
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................22117174.00171740000207951181031110000000001000100000001900000002071000100100012000000000000000000431401898770160622711773267760316024722632111711038572041001334423502000011404066000000000010941389921014000000570000000000000153201620816012061152024005901020000000000000000000000001002880215082439626160214000054442602110021026101121400010000000411071402166900203212531649291040130000012420160200002010040910140212220
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................21113538.0013538000000440323900100000000020010000000010160100012301000100300000100000000000000000000100040613918776144002030021001153640052105000121400340000000000000010000000009445885112922130111100305100050010039011000110220001001330110000020013050730000001110102111012650463271019000090551702000000201000026100001211123112118062101421134334332573757329138011204122226418220414030080948370412150
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................20111581.0011581000000000200000000000000001000000086480000000108000002000000000000000000000000001100422016000001000100010000000000002200000000000000000001000000464144381012000032000000003001000202000010000040031012001000000114050500000100096623283512070121700150000146133002200011020301313020003000004000219041100523212213542011614113110024355361072085458714347211103225986731259440
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................2316896.006896000000052000000000000000000000000030001011102010000000000000000000000000000000000885123345641210001000100100000000230106009000000000000000000000000117836878104520011000000000010000010000000010000000121100010000000011003000000000002000100050382020000268811000000000000001110010000010202001020100001000011204318101201010020102020004010050100200780301000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................2213934.003934000000844174000000000000000000000000400000000000000000000000000000000000000000000009124212142341940012040000013011000122300005940470000000030000000000000001754506012000000000000000000000613000101110000000000500000000002000000000000000000002309041090000000003619000000000000000150000000000000000000000100000000112302611000000000050000000000000000101060000100
....................................................................................TTCATCGGGCCATTCGCTA......................................................................................................................................................1912959.0029590000000000000000000000000000000000420000000000000000000000000000000000000000000000300132141239201000200200201010000044653004721158000000000000000000000000242209488136230000000000000000000000000000000100100000000000000001000000000000000000000000001010000000037220000001000000000100000000000000000000000000000001560200000000000000000000001000000000010000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................2112939.00293900000032014600000000000000000000000090000000000000000000001010000000000000000000000546151331425610001000340072310010062110068100420000000000000000000000001757108356100000000000000000000050210211101050000008000100000000000000000000000000011306237064000100005461000000000010000010000000001000001700030000000100057611000000020000000000001010000000000400000100
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................2312237.0022370000004840000000000000000000000000000000000010000000000000000000000000000000000001075047000000000000000020000000002003000000000000000000000000261771995681010000010000000000000001000000000000000010001000000000000000000001000000000004020000000037260000000000000000100000000000000024000101000000001135812100000210000000000001001010000000520000010
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................2411676.001676000000167000000000000000000000000010000000001000000000000000000000000000000000000371987851001000000002000000000000014107000000000010000000000000413252101000000000000000000000000000000000000000001000000001807000300000000000001010102604000000003935000000000000000010000000000000000014240201000000084033700000100000001021010110130000003060001000
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................2411627.001627000000058100000000000000000000000010000000000100000000000000000000000000000000000631168772000010000001001200000100011401000010000000000000000000732451602000000000000000001000000001100000100000020000000000008010200000000000100040314412810105000055450000100000000000200000000000100022001504001000101755235001001000100020100130200000002049120000000
......................................................................................................AAAAGGAACGATCGTTGTGATATG...............................................................................................................................2411316.001316000020416974000000000000000000000000000000000000000000000000000000000000000000000004651111561757000000000400010040000617000502029000000000000000000000000073000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000027000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................2311250.0012500000001819544130000000000000000000000003000000000100000000000000000000000000000000000011348252630000000000000000000018600010101200100000000000000000000011768012000000000000000000000000000000000000000000001000000000000000000000000000000000030600000000191301001000000000000000000000000000030001010000000014204900001101000000023000000010000102210000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................2411108.001108000000041030100000000000000000000002000000000000010000000100000000000000000000000010658159104221000010010041100001018000427080000000000000000000000001248512410000000000000000000000000000000000000000000000000000000000200000000000000120703123500000000141100000000000000002000000000000000000001000000000003071000000000000000000000000000000000000000000
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................2211009.0010090000005361110000000000000000000000001000000000000000000000000000000000000000000000033838821022700000100000000000000870002610100000000000000000000000003442921700000000000000000000000000000000000000000000000000000000000000000000002000021019150000000010900000000001000000000000000000000000000000000000001421500000000000000000000000000000000130000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................241768.007680000000000000000000000000000000000400000000000000000000000000000000000000000000001705410000000000010000000000000200000000000000000000000000014567018000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000301600000000000000001000000000000000010000000000010004467300100000000000000000000000000000130100000
......................................................................................................AAAAGGAACGATCGTTGTGATAT................................................................................................................................231678.00678000000139520000000000000000000000000000000000000000000000000000000000000000000000026651105117130000000100011040000112000203027000000000000000000000000011000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000011000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................231647.0064700000001100000000000000000000000000000000000100000000000000000000000000000000000090861000000000000000000000000020000000000000000000000000003674772461000000000000000000000000000000000000000000000000000000000200000000000000000101020001000013700000000000000001000000000000001000000000000000003263900000000000000000000010001000000130000000
...................................................................................ATTCATCGGGCCATTCGCTA......................................................................................................................................................201592.00592000010110000000000000000000000000024000000000000000000000000000000000000000000000031009000010000000000000000100000000000000000000000000000002891138321100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000220000000000000000000000000000000000000000000000000242000000000000000002000000000000000010000000
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................221531.0053100000011071000000000000000000000000020000000000000000010000000000000000000000000000441123161000001000001000100000000040040000000000000000000000001030252200001000000000010000000000000000010000000000000000000000000000000000010010110010010030000111400000000000000000000000000000000000100020100000002404000000000000000100000011000000000100000000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................191512.00512000000000000000000000000000000000021000000000010000000000000000000000000000000000006000000000000000000100000000000001000000000000000000000000313170050000000000000030000001000000000100000000100000000000000000000000000000000000030110000000261500000000000000000000000000000001010011000200010126810400100000000111010108000000000400120000000
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................211401.00401000000186400000000000000000000000020000000000000000000000000000000000000000000000138136468170000000000011020000023000203040000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000102014030000000010000000000000000000000000000000000000000000001000016300000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................211354.003540000001313000000000000000000100000300000000000000000000000000000000000000000010004527263250000100000021000000004000231040000000010100000000000001083800000000000000000000000000100011100000001010000000000000000000000000000010040009021110100001013100000000000000010000010000000000000000000100100052800000000000040000100000000000000200000000
....................................................................................TTCATCGGGCCATTCGCTAC.....................................................................................................................................................201345.0034500000000000000000000000000000000003450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................181290.0029000000000000000000000000000000000000000000000100000000000000000000000000000000000010003000000000000000000000000000000000000000000001030000002721280220000000000000000000000000000000100000000000000000000000000000000000000000000000000000000191200000000000000000000000000001000000000000000000001243600000000000211000000000000001000101100000
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................211284.002840000000300000000000000000000000000000000000000000000000000000000000000000000000009131472260000000000000200000004000160013000000000000000000000000011700000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000020000000000000000000000000000000034000000000000000000000000000000000000000000
.....................................................................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................................................231237.00237000000011000000000000000000000000010000000000000000000000000000000000000000000000472081210000000000000000000000000110000000000000000000000000008910800000000000000000000000000000000000000000000000000000000000000000000000000000000030000000064000000000000000000000000000000000000000000000000084300000000000000000000000000000000000000000
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................181163.001630000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000131150000000000000000000000000000000000000000000000000000000050200000000000000000000000000000000650000000000000000000000000000000000000001000000000105900000000000000000000000000000000000000000
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................191154.001540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129242300000000000000000000000100000000000000000000000000000000000000000000000000000001030000000032000000000000000010000000000000000000000000000000065100000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATC....................................................................................231151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000200340000000000000000000000000001010000000000000000000000000201100000000000000000000001000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000104200000000000000000000000000000000000000000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................211148.0014800000002000000000000000000000000000000000000000000000000000000000000000000000000048226121200000000000000000000020004004000000000000000000001000301020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000019500000000000000000000000000000000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................201145.0014500000000110000000000000000000000004700000000030000010000000000000000000000000000004224000000000000000000000000001300010000000000020000000000112000000000000000000000000202000000000100000010000000000000000000000000000000090005040001000055001000005000000120000000010000000000000001010000012700000000000000000000000000000200000000010
...........................................................................................................GAACGATCGTTGTGATATG...............................................................................................................................191133.0013300000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000010000000000000000000000000006965000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000105000000000000000000000000000000001000000000000000077700000000000000000000000000000000000000000
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................221127.00127000000001000000000000000000000000000000000000000000000000000000000000000000000000407200000000000000000000000000210700000000000000000000000010220400000000000000000000000000000000000000010000000000000000000000000000000000100000000000000860000000000000000000000000000000000000000000000000312700000000000000000000000010000001540000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................231125.001250000000102000000000000000000000000100000000000000000000000000000000000000000000001772613700000000000000000000000001008000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000005080000000011000000000000000000000000000000000000000000000000025000000000000000000000000000000000000000000
....................................................................................TTCATCGGGCCATTCGCTACTG...................................................................................................................................................221117.0011700000000000000000000000000000000001170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................221108.00108000000522109000000000000000000000000000000000000000000000000000000000000000000000009143100000000000001010000010000100000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000001000000000002012001000033000000000000000000000000000000000000000000000000016500000001000000000000010000000100000000000
.................................................................................................................................................ATATCACAGTGATTTTCCTTTATA....................................................................................241107.001070000000010000000000000000000000000000000000000000000000000000000000000000000000003041511200000000000000000000100001001000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000037000000000000000000000000000000000000000000
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................181100.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317317400000000000000000000000000000010000000000000000000000000000000000000000000001010300000000470000000000000000000000000000100000000000000000000101000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGATC............................................................................................................................26194.009400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AAAGGAACGATCGTTGTGATC.................................................................................................................................21176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000342000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000120000000000000000000000000000000000000000000000000362000000000000000000000000000000000000000000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................20176.0076000000001000000000000000000000000000000000000000000000000000000000000000000000000210721301000000000000000000020001010000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000112000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
droSim2
G-----------------------------------------TTAAGT-T----------ATCACCA--A-------------ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC-C----CAACATATCACAGTGATTTTCCTTTATATCGCATGTTAAA--AGTCCACAATTCATCAA-G-----G-AAAATGAAAGCC------AA-GTTGGCA--------GCTTACTASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................231153742.001537429463548381180010874145074440006315824125397001
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................221122204.00122204876453472531332012331001341923219911406957320
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................21136713.00367131053228658501132193673382332396103004
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................20110151.0010151198418774301874443142318336002
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................2314563.00456300714317418150214390145100000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................2213927.00392700754117307186970237705030
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................2411342.001342108801002219723202403000
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................2411338.001338139561002013221402603000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................221927.0092700340240327463012400000
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................221851.00851118030000021190204000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................211808.0080800861300252228030910000
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................231712.007120032600033152126040062000
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................241347.003470134500000010000000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................191321.0032181209005303137311013000
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................201278.002786027100000000100000
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................231247.00247009900000626911600000
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................241222.00222001130003155390902000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................231218.0021800960002050490849000
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................221217.00217001620003022240600000
.....................................................................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................................................231182.0018200690001149620000000
.......................................................................................................AAAGGAACGATCGTTGTGATAG................................................................................................................................221180.001801017600000010101000
....................................................................................TTCATCGGGCCATTCGCTA......................................................................................................................................................191159.001590114900010010700000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................241152.00152001010020344006500000
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................221121.00121128100010101101113000
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................211116.001160010700010160100000
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................231111.001110095000001130200000
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................22193.0093003314000031140100000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20179.007900000010201704100000
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................21170.0070002512000015170100000
.......................................................................................................AAAGGAACGATCGTTGTGG...................................................................................................................................19169.0069006800000100000000
........................................................................................................................................................AGTGATTTTCCTTTATA....................................................................................17167.00670000000049180000000
.......................................................................................................AAAGGAACGATCGTTGTGAG..................................................................................................................................20165.0065006500000000000000
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................18156.0056004100000681000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21147.0047004103103403001000
.......................................................................................................AAAGGAACGATCGTTGTGATATTT..............................................................................................................................24133.0033000000101100030000
...........................................................................................................GAACGATCGTTGTGATAT................................................................................................................................18129.0029002400000140000000
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................19129.0029000012003210200000
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................18126.00260020010011110100000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAA.............................................................................................................................25126.0026001300000670000000
.........................................................................................................AGGAACGATCGTTGTGATAT................................................................................................................................20125.0025001610000350000000
..........................................................................................................GGAACGATCGTTGTGATATG...............................................................................................................................20123.002300810000680000000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................21123.002300900000770000000
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................21121.002100200100750600000
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................19120.0020000000000301700000
......................................................................................................AAAAGGAACGATCGTTGTGATAT................................................................................................................................23119.0019001100000530000000
...........................................................................................................GAACGATCGTTGTGATATG...............................................................................................................................19119.001900600000480100000
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................18118.0018000000000001800000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25118.0018001400000010300000
..........................................................................................................GGAACGATCGTTGTGATAT................................................................................................................................19116.0016001200000220000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAT.............................................................................................................................25115.0015001300000000101000
........................................................................................................AAGGAACGATCGTTGTGATA.................................................................................................................................20114.0014001200000110000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................23114.001400100001450300000
.......................................................................................................AAAGGAACGATCGTT.......................................................................................................................................15114.001400000001670000000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................20113.001300000000240700000
.......................................................................................................AAAGGAACGATCGTTGTGATAAA...............................................................................................................................23112.001202400000310002000
..................................................................................................................................................TATCACAGTGATTTTCCT.........................................................................................18111.001100000300110600000
............................................................................................................AACGATCGTTGTGATAT................................................................................................................................17111.001100000000362000000
.........................................................................................................AGGAACGATCGTTGTGAT..................................................................................................................................18111.0011001100000000000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA..................................................................................25110.001000110000220400000
........................................................................................................AAGGAACGATCGTTGTGAT..................................................................................................................................19110.001000900000000100000
.......................................................................................................AAAGGAACGATCGTTG......................................................................................................................................16110.001000000000451000000
.......................................................................................................................................................CAGTGATTTTCCTTTATA....................................................................................1819.00900000000270000000
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................2119.00900700000010001000
.........................................................................................................................................................GTGATTTTCCTTTATA....................................................................................1618.00800000000620000000
..........................................................................................................GGAACGATCGTTGTGATA.................................................................................................................................1818.00800300000140000000
........................................................................................................................................................AGTGATTTTCCTTTAT.....................................................................................1618.00800000000800000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATC....................................................................................2317.00700000000100600000
.........................................................................................................AGGAACGATCGTTGTGATA.................................................................................................................................1917.00700600000010000000
......................................................................................................AAAAGGAACGATCGTTGTGAT..................................................................................................................................2117.00700600000010000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................2316.00600000000100500000
...................................................................................ATTCATCGGGCCATTCGCTA......................................................................................................................................................2016.00600600000000000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTA......................................................................................2016.00600010100010300000
....................................................................................................................................................TCACAGTGATTTTCCTTTATAA...................................................................................2216.00600000000320100000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................2416.00600000000110400000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTC.............................................................................................................................2515.00500400000010000000
droSec2
GGAAATCAA--------------------------------GTTAAGT-G----------ATCCCCA--A-------------ATTCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTC-C---CGAACATATCACAGTGATTTTCCTTTATAACGCATGTTTAA--AGTCCACAATTCATCAA-G-----G-AAAATTA-AGCC------AA-GTTGGCA--------GCTTACTASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................23128672.00286723921527808457
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................2217289.00728995226980192
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................2211700.001700861159419
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................2111183.0011839211666
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................201899.008992487419
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................231631.00631184042324
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................221177.001774401330
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................211174.001741501581
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................241139.00139301351
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................241109.00109201070
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................23197.009711923
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................22175.0075280443
.....................................................................................................TAAAAGGAACGATCGTTGTGAT..................................................................................................................................22166.006600660
....................................................................................TTCATCGGGCCATTCGCTA......................................................................................................................................................19166.006650547
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................24157.005700561
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................21143.004370351
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................23140.004010381
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................24134.003460280
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................19131.003110300
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................23131.003100310
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................18127.002700270
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20127.002720241
..................................................................................................................................................TATCACAGTGATTTTCCT.........................................................................................18126.002600251
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21123.002320210
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................22122.002200220
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25116.001601150
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................18113.001300130
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................20110.001000100
.....................................................................................................TAAAAGGAACGATCGTTGTGATA.................................................................................................................................23110.001000100
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................2118.0080080
........................................................................................................AAGGAACGATCGTTGTGATA.................................................................................................................................2017.0071060
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................2316.0060060
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................2116.0064020
.......................................................................................................AAAGGAACGATCGTTGTGATATGAA.............................................................................................................................2515.0050050
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................1915.0050050
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................2114.0043010
...................................................................................ATTCATCGGGCCATTCGCTA......................................................................................................................................................2014.0040040
...........................................................................................................GAACGATCGTTGTGATATG...............................................................................................................................1914.0040040
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................2213.0030030
...........................................................................................................GAACGATCGTTGTGATAT................................................................................................................................1813.0030030
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................2313.0030030
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................1813.0030030
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................2113.0030030
.......................................................................................................AAAGGAACGATCGTTGTGATATGGT.............................................................................................................................2512.0020020
.........................................................................................................AGGAACGATCGTTGTGATAT................................................................................................................................2012.0021010
.....................................................................................................TAAAAGGAACGATCGTTGTGATAT................................................................................................................................2412.0020011
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................2412.0020020
.......................................................................................................AAAGGAACGATCGTTGTGATATGTA.............................................................................................................................2512.0020020
......................................................................................................AAAAGGAACGATCGTTGTGAT..................................................................................................................................2112.0020020
.....................................................................................................TAAAAGGAACGATCGTTGTGA...................................................................................................................................2112.0020020
.......................................................................................................AAAGGAACGATCGTTGTGATAG................................................................................................................................2212.0020020
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................2412.0020020
.......................................................................................................AAAGGAACGATCGTTGTGATATGAT.............................................................................................................................2512.0020011
.......................................................................................................AAAGGAACGATCGTTGTGATATTTT.............................................................................................................................2511.0010010
...................................................................................................................................................ATCACAGTGATTTTCCTT........................................................................................1811.0010010
..................................................................A--A-------------ATTCATCGGGCCATTCGCTA......................................................................................................................................................2211.0010010
.......................................................................................................AAAGGAACGATCGTTGTTC...................................................................................................................................1911.0010010
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAG...................................................................................2311.0010010
........................................................................................................................................................AGTGATTTTCCTTTATAA...................................................................................1811.0010010
..................................................................................................................................................TATCACAGTGATTTTCCTTATA.....................................................................................2221.0020020
.......................................................................................................AAAGGAACGATCGTTGTGATACT...............................................................................................................................2311.0010010
....................................................................................................CTAAAAGGAACGATCGTTGTGAT..................................................................................................................................2311.0010010
.......................................................................................................AAAGGAACGATCGTTGTGATATTT..............................................................................................................................2411.0010010
.......................................................................................................AAAGGAACGATCGTTGTGT...................................................................................................................................1911.0010010
droYak3
G-----------------------------------------TTAAGT-G----------TTCCCCC--A-------------ATTTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGTACAA--AGTCCACAACTCATCAA-G-----G-GAAATGAAAGCC------AA-----------------------ASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................231203258.0020325828641926911043572652000
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................22176864.00768642831739572786425951180
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................21110780.0010780215104113361101040
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................2215615.00561500561140000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................2213667.003667032191217230000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................2313427.003427013198614280000000
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................2012567.00256736223301940130010
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................2311430.001430001370600000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................2411377.001377201346280100000
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................241748.0074800729180100000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................211505.00505013271770000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................221481.00481033671110000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................241426.0042600407190000000
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................201396.003964039200000000
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................231325.0032500311140000000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................231246.0024600235110000000
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................221193.001930718510000000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................191153.001534013990001000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAC.....................................................................................221116.001160011330000000
....................................................................................TTTAACGGGCCGTTCGCTA......................................................................................................................................................19194.00940056380000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21190.00900367200000000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................24173.00730136360000000
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................22171.0071006740000000
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................23167.0067006520000000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20159.0059009500000000
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................21153.0053035000000000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................21149.0049004900000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGG..............................................................................................................................24147.0047004430000000
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................21132.0032003110000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTAC.....................................................................................21130.0030003000000000
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................18124.0024002220000000
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................19120.0020015140000000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................20120.0020011090000000
.......................................................................................................AAAGGAACGATCGTTGTGATT.................................................................................................................................21120.0020002000000000
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................18117.0017001700000000
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................21114.0014011210000000
..........................................................................................................GGAACGATCGTTGTGATATG...............................................................................................................................20114.0014001400000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................23113.0013001030000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................25113.0013001120000000
.......................................................................................................AAAGGAACGATCGTTGTGATC.................................................................................................................................21112.001200930000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTA......................................................................................20112.0012001110000000
........................................................................................................AAGGAACGATCGTTGTGATAC................................................................................................................................21111.0011001100000000
.........................................................................................................AGGAACGATCGTTGTGATAT................................................................................................................................20111.0011001100000000
.......................................................................................................AAAGGAACGATCGTTGTGATATTT..............................................................................................................................24111.0011001100000000
.......................................................................................................AAAGGAACGATCGTTGTGATATGAT.............................................................................................................................25111.0011001100000000
droEre2
G-----------------------------------------TTAAGT-G----------ATCCCCT--A-------------ATTTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTC-C---CTAACATATCACAGTGATTTTCCTTTATAACGCATGTAAAA--AGTCCAAAACTCATCAATG-----G-GAAATGAAAGCC------AAAGTTGCC----------------ASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................AAAGGAACGATCGTTGTGATATG...............................................................................................................................2316818.00681811512632230038166
..................................................................................................................................................TATCACAGTGATTTTCCTTTAT.....................................................................................2213303.003303361170401233140
.......................................................................................................AAAGGAACGATCGTTGTGATAT................................................................................................................................2212638.00263830013661954980
..................................................................................................................................................TATCACAGTGATTTTCCTTTATA....................................................................................2312516.00251651214570545020
.......................................................................................................AAAGGAACGATCGTTGTGATA.................................................................................................................................211465.00465282610174110
...................................................................................................................................................ATCACAGTGATTTTCCTTTAT.....................................................................................211324.00324481520123010
...................................................................................................................................................ATCACAGTGATTTTCCTTTATA....................................................................................221229.0022952143034000
.......................................................................................................AAAGGAACGATCGTTGTGAT..................................................................................................................................201229.002294740145240
.......................................................................................................AAAGGAACGATCGTTGTGATATT...............................................................................................................................231194.001948280158000
.......................................................................................................AAAGGAACGATCGTTGTGATAC................................................................................................................................221112.00112110803000
........................................................................................................AAGGAACGATCGTTGTGATATG...............................................................................................................................221109.00109107101000
..................................................................................................................................................TATCACAGTGATTTTCCTTTAC.....................................................................................221103.0010309904000
..................................................................................................................................................TATCACAGTGATTTTCCTTTA......................................................................................21166.00661534017000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAA...................................................................................24165.00651032023000
.......................................................................................................AAAGGAACGATCGTTGTGATATGT..............................................................................................................................24155.005534209100
.......................................................................................................AAAGGAACGATCGTTGTGATATC...............................................................................................................................23143.0043414025000
..................................................................................................................................................TATCACAGTGATTTTCCTTT.......................................................................................20137.003718028000
........................................................................................................AAGGAACGATCGTTGTGATAT................................................................................................................................21134.003431201000
.......................................................................................................AAAGGAACGATCGTTGTGATATGA..............................................................................................................................24130.003061608000
.......................................................................................................AAAGGAACGATCGTTGTGATATGC..............................................................................................................................24119.001901207000
....................................................................................TTTGACGGGCCGTTCGCTA......................................................................................................................................................19117.001740013000
......................................................................................................................................................ACAGTGATTTTCCTTTAT.....................................................................................18116.001601015000
.......................................................................................................AAAGGAACGATCGTTGTGA...................................................................................................................................19113.00130606010
...................................................................................................................................................ATCACAGTGATTTTCCTTTAC.....................................................................................21111.001101100000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATAA...................................................................................23110.00103403000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAT...................................................................................24110.00101306000
.......................................................................................................AAAGGAACGATCGTTGTGATACC...............................................................................................................................23110.00100901000
.......................................................................................................AAAGGAACGATCGTTGTGATATA...............................................................................................................................2319.0092007000
....................................................................................................................................................TCACAGTGATTTTCCTTTAT.....................................................................................2018.0082204000
.......................................................................................................AAAGGAACGATCGTTGTGAC..................................................................................................................................2017.0070700000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAC...................................................................................2416.0060600000
..................................................................................................................................................TATCACAGTGATTTTCCTT........................................................................................1916.0061104000
....................................................................................................................................................TCACAGTGATTTTCCTTTATA....................................................................................2116.0060501000
......................................................................................................................................................ACAGTGATTTTCCTTTATA....................................................................................1915.0050203000
.......................................................................................................AAAGGAACGATCGTTGTGATATGTT.............................................................................................................................2514.0040102100
.......................................................................................................AAAGGAACGATCGTTGTGATACT...............................................................................................................................2314.0040103000
.......................................................................................................AAAGGAACGATCGTTGTG....................................................................................................................................1814.0040102010
..................................................................................................................................................TATCACAGTGATTTTCCTTTATG....................................................................................2314.0041201000
.........................................................................................................AGGAACGATCGTTGTGATATG...............................................................................................................................2114.0043100000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATT....................................................................................2313.0030201000
..........................................................................................................GGAACGATCGTTGTGATATG...............................................................................................................................2013.0033000000
...................................................................................................................................................ATCACAGTGATTTTCCTTTATT....................................................................................2213.0030102000
.....................................................................................................................................................CACAGTGATTTTCCTTTATA....................................................................................2013.0031200000
.....................................................................................................................................................CACAGTGATTTTCCTTTAT.....................................................................................1913.0031101000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATC....................................................................................2313.0030102000
............................................................................................................AACGATCGTTGTGATATG...............................................................................................................................1812.0020002000
.......................................................................................................AAAGGAACGATCGTTGTGATAA................................................................................................................................2212.0020101000
........................................................................................................AAGGAACGATCGTTGTGAT..................................................................................................................................1912.0021100000
.......................................................................................................AAAGGAACGATCGTTGTGATATTA..............................................................................................................................2412.0020002000
...........................................................................................................GAACGATCGTTGTGATATG...............................................................................................................................1912.0021001000
..................................................................................................................................................TATCACAGTGATTTTCCTTTATAAA..................................................................................2512.0020101000
....................................................................................................................................................TCACAGTGATTTTCCTTTATAA...................................................................................2212.0021001000
.......................................................................................................AAAGGAACGATCGTTGTGATG.................................................................................................................................2112.0021100000
..................................................................................................................................................TATCACAGTGATTTTCCT.........................................................................................1812.0020001010
.........................................................................................................AGGAACGATCGTTGTGATAT................................................................................................................................2012.0022000000
.......................................................................................................AAAGGAACGATCGTTGTGATAAT...............................................................................................................................2312.0020002000

Generated: 10/20/2015 at 06:57 PM