ID:

dmo-mir-4

 Coordinate:

scaffold_6496:20936627-20936707 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.8 -27.8 -27.1

Flybase annnotation

pre_miRNA [Dmoj\mir-4-RM]; utr3 [utr3_minus_3617]; miRNA [Dmoj\miR-4-RA]

No Repeatable elements found

Sense Strand Reads

AGTGCATGGTTCAAACTTAAAAAGAAAACAAAATCTATATCGTATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCCTATATATAATATATATATATACATCTATGAAAAGTTT

***********************************************..((((((((.((((((..((((.(((.(((.((..((((((.....)))))).))))).))).))))..)))))).))))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V056

head

 V110

male body		 V049

head
..................................................................................................ATAAAGCTAGACAACCATTGAA............................................................. 22 0 1 144666.00 144666 141958 2689 10 5 2 2
..................................................................................................ATAAAGCTAGACAACCATTGA.............................................................. 21 0 1 49844.00 49844 47121 2712 3 5 2 1
..................................................................................................ATAAAGCTAGACAACCATTGAAG............................................................ 23 0 1 44021.00 44021 42288 1733 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAA............................................................. 22 1 1 19289.00 19289 19287 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAA............................................................ 23 1 1 17180.00 17180 16792 388 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAG............................................................ 22 0 1 9277.00 9277 8762 513 2 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGA.............................................................. 21 1 1 6465.00 6465 6461 4 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 5975.00 5975 5973 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAT............................................................ 23 1 1 5791.00 5791 5683 108 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTG............................................................... 20 0 1 5554.00 5554 5340 210 2 1 1 0
..................................................................................................ATATAGCTAGACAACCATTGAA............................................................. 22 1 1 3633.00 3633 3631 2 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 2265.00 2265 2265 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................... 23 0 1 2097.00 2097 1969 127 0 0 1 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................... 24 0 1 1485.00 1485 1422 62 0 1 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAC............................................................. 22 1 1 1470.00 1470 1456 14 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAA............................................................. 23 0 1 1316.00 1316 1313 3 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAA............................................................. 22 2 1 1299.00 1299 1299 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAA............................................................. 21 0 1 1294.00 1294 1270 24 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGA.............................................................. 21 1 1 1202.00 1202 1202 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAT................................................................. 18 0 1 1163.00 1163 1163 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAG............................................................ 23 1 1 1149.00 1149 1149 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 1111.00 1111 1110 1 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAA............................................................. 22 1 1 1087.00 1087 1081 6 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAC............................................................ 23 1 1 1056.00 1056 1046 10 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAA............................................................. 22 1 1 780.00 780 776 4 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAT............................................................ 23 2 1 766.00 766 766 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAA............................................................. 22 1 1 736.00 736 702 34 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTG............................................................... 20 1 1 717.00 717 717 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGA.............................................................. 22 0 1 549.00 549 541 8 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGG................................................................................................. 22 0 1 546.00 546 481 64 1 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAA............................................................ 22 1 1 544.00 544 527 17 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAA............................................................. 22 1 1 492.00 492 491 1 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAG............................................................ 23 2 1 469.00 469 469 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................... 24 2 1 437.00 437 433 4 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAA............................................................ 23 2 1 434.00 434 434 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAT............................................................. 22 1 1 430.00 430 402 28 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAA............................................................. 22 1 1 423.00 423 414 9 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAA............................................................. 20 0 1 396.00 396 395 1 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAG............................................................ 22 1 1 396.00 396 396 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAA............................................................. 22 1 1 391.00 391 387 4 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAA............................................................. 22 1 1 386.00 386 383 3 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGA.............................................................. 21 1 1 384.00 384 370 14 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGAA............................................................. 22 1 1 375.00 375 375 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 372.00 372 371 1 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGA.............................................................. 21 1 1 356.00 356 356 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAA............................................................. 22 1 1 351.00 351 351 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAG............................................................ 23 1 1 348.00 348 343 5 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAG............................................................ 24 0 1 328.00 328 326 2 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAA............................................................. 22 2 1 304.00 304 304 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAA............................................................. 22 1 1 300.00 300 298 2 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGA.............................................................. 20 0 1 294.00 294 291 3 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGA.............................................................. 21 1 1 263.00 263 258 5 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGA.............................................................. 21 1 1 252.00 252 251 1 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAA............................................................. 22 1 1 251.00 251 251 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGA.............................................................. 21 2 2 235.00 470 470 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAG............................................................ 23 1 1 230.00 230 229 1 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAAG............................................................ 22 1 1 226.00 226 226 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................... 23 1 1 218.00 218 218 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAG............................................................ 23 1 1 215.00 215 205 10 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAT............................................................ 22 1 1 210.00 210 206 4 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAA............................................................. 22 1 1 210.00 210 208 2 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 24 0 1 209.00 209 175 33 0 0 1 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 24 0 1 202.00 202 82 120 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACG............................................................ 23 1 1 200.00 200 194 6 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGT........................................................... 24 1 1 197.00 197 197 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAC............................................................. 22 2 1 174.00 174 174 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................... 24 1 1 170.00 170 169 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGA.............................................................. 21 1 1 157.00 157 154 3 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAT............................................................ 23 2 1 156.00 156 156 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAA............................................................ 24 1 1 155.00 155 154 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................... 24 1 1 151.00 151 149 2 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAG............................................................ 21 0 1 150.00 150 150 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGT................................................................................................ 23 0 1 149.00 149 118 31 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGA.............................................................. 21 1 1 148.00 148 147 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAA............................................................. 22 1 1 145.00 145 138 7 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 25 0 1 143.00 143 64 79 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 142.00 142 142 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTG............................................................... 20 1 1 140.00 140 140 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAC............................................................ 23 2 1 138.00 138 138 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAG............................................................ 23 1 1 133.00 133 131 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAC................................................................. 18 1 2 132.50 265 265 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGA.............................................................. 21 1 1 132.00 132 129 3 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 23 0 1 131.00 131 125 6 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGA.............................................................. 21 1 1 131.00 131 127 4 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAG............................................................ 23 1 1 126.00 126 124 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATT................................................................ 19 0 1 124.00 124 116 8 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAC............................................................ 22 1 1 122.00 122 122 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAA............................................................ 23 2 1 122.00 122 122 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGA.............................................................. 21 1 1 120.00 120 119 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCAT................................................................. 18 1 1 118.00 118 118 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAATT........................................................... 24 1 1 116.00 116 114 2 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGA.............................................................. 19 0 1 114.00 114 114 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAAG............................................................ 23 2 1 114.00 114 114 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAA............................................................. 22 2 1 114.00 114 114 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 113.00 113 113 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGGA............................................................. 22 1 1 113.00 113 94 19 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAG............................................................ 23 1 1 112.00 112 108 4 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAT........................................................... 24 1 1 111.00 111 106 5 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGAA............................................................. 22 1 1 109.00 109 106 3 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 109.00 109 108 1 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGAA............................................................. 22 2 1 105.00 105 105 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGAAG............................................................ 23 1 1 105.00 105 105 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAT............................................................. 23 1 1 105.00 105 100 5 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGA.............................................................. 21 1 1 102.00 102 102 0 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGAA............................................................. 22 1 1 102.00 102 101 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAG............................................................. 22 1 1 101.00 101 91 10 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAA............................................................. 22 1 1 99.00 99 94 5 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGA.............................................................. 21 2 1 98.00 98 98 0 0 0 0 0
..................................................................................................CTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 97.00 97 96 1 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 96.00 96 92 4 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAA.............................................................. 21 1 1 95.00 95 93 2 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAA............................................................ 23 2 1 95.00 95 95 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAA............................................................. 22 1 1 94.00 94 94 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAG.................................................................................................. 21 0 1 93.00 93 63 29 1 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGAA............................................................. 22 1 1 92.00 92 86 6 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGAA............................................................. 22 1 1 89.00 89 87 2 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAAG............................................................ 23 1 1 85.00 85 85 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACA............................................................ 23 2 1 84.00 84 79 5 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGAA............................................................. 24 0 1 83.00 83 81 2 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGAA............................................................. 22 1 1 83.00 83 82 1 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAA............................................................ 23 3 2 81.00 162 162 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAC............................................................. 22 2 1 78.00 78 77 1 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAA............................................................ 23 2 1 78.00 78 76 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGAA............................................................. 22 1 1 77.00 77 71 6 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGAA............................................................. 22 1 1 76.00 76 74 2 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGA.............................................................. 21 1 1 76.00 76 76 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGTA............................................................. 22 1 1 75.00 75 68 7 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGA.............................................................. 21 1 1 75.00 75 75 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAGT........................................................... 23 1 1 75.00 75 75 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACTATTGAA............................................................. 22 2 1 74.00 74 74 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGAA............................................................. 22 2 1 74.00 74 73 1 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAC............................................................. 23 1 1 74.00 74 74 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGA.............................................................. 21 2 1 74.00 74 73 1 0 0 0 0
..................................................................................................AGAAATCTAGACAACCATTGAA............................................................. 22 2 1 73.00 73 73 0 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGAA............................................................. 26 0 1 72.00 72 72 0 0 0 0 0
..................................................................................................ATAAAGGTAGACAACCATTGAA............................................................. 22 1 1 72.00 72 72 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGAA............................................................. 22 1 1 71.00 71 67 4 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAAG............................................................ 23 1 1 70.00 70 69 1 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGT................................................................................................ 22 0 1 70.00 70 58 12 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAA............................................................. 22 1 1 69.00 69 64 3 1 1 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGAC............................................................. 22 3 1 69.00 69 69 0 0 0 0 0
...................................................................................................TTAAGCTAGACAACCATTGAAG............................................................ 22 1 1 69.00 69 69 0 0 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGAA............................................................. 22 1 1 68.00 68 62 6 0 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGAA............................................................. 22 1 1 67.00 67 61 6 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGG.............................................................. 21 1 1 66.00 66 60 6 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGAA............................................................. 22 1 1 62.00 62 60 2 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAA............................................................. 19 0 1 61.00 61 61 0 0 0 0 0
..................................................................................................AGAAACCTAGACAACCATTGAA............................................................. 22 2 1 60.00 60 60 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAC............................................................. 22 2 1 59.00 59 59 0 0 0 0 0
...................................................................................................TAAAGCTCGACAACCATTGAAG............................................................ 22 1 1 57.00 57 57 0 0 0 0 0
..................................................................................................AGCAAGCTAGACAACCATTGAA............................................................. 22 2 1 57.00 57 57 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAAA............................................................ 23 2 1 56.00 56 56 0 0 0 0 0
..................................................................................................ATAAAGCTAGACGACCATTGAA............................................................. 22 1 1 55.00 55 50 5 0 0 0 0
..................................................................................................ATAAAGCTAGACAATCATTGAA............................................................. 22 1 1 55.00 55 49 6 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAAA........................................................... 24 3 1 55.00 55 55 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAA............................................................. 21 1 1 53.00 53 53 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAAGT........................................................... 23 1 1 53.00 53 53 0 0 0 0 0
..................................................................................................AGAAAGCCAGACAACCATTGAA............................................................. 22 2 1 52.00 52 52 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACT............................................................ 23 2 1 50.00 50 50 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTG............................................................... 20 1 1 50.00 50 50 0 0 0 0 0
..................................................................................................ATAAAGCTCGACAACCATTGAA............................................................. 22 1 1 50.00 50 49 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAATGAA............................................................. 22 1 1 49.00 49 47 2 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................... 23 1 1 49.00 49 48 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATAGAA............................................................. 22 1 1 48.00 48 48 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTAAA............................................................. 22 2 1 48.00 48 48 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAT............................................................ 24 1 1 48.00 48 46 2 0 0 0 0
...........................................................................................GACGATCATAAAGCTAGACAACCATTGAA............................................................. 29 3 1 48.00 48 48 0 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGA.............................................................. 23 0 1 48.00 48 48 0 0 0 0 0
..................................................................................................AGAAAGCTAGAAAACCATTGAA............................................................. 22 2 1 48.00 48 48 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAA............................................................ 23 2 1 47.00 47 47 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAA............................................................ 23 2 1 47.00 47 46 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAT............................................................. 22 2 1 47.00 47 47 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGA.............................................................. 21 2 1 46.00 46 46 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAA............................................................ 23 2 1 45.00 45 45 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGAAA............................................................ 23 2 1 45.00 45 45 0 0 0 0 0
...............................................................................................ATCATAAAGCTAGACAACCATTGAA............................................................. 25 0 1 45.00 45 44 1 0 0 0 0
..................................................................................................ATGAAGCTAGACAACCATTGAA............................................................. 22 1 1 44.00 44 40 4 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAC............................................................. 22 2 1 44.00 44 44 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAAG............................................................ 23 1 1 43.00 43 43 0 0 0 0 0
.................................................................................................CGTAAAGCTAGACAACCATTGAA............................................................. 23 1 1 43.00 43 43 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAT............................................................ 23 2 1 43.00 43 43 0 0 0 0 0
...................................................................................................AAAAGCTAGACAACCATTGAAG............................................................ 22 1 1 43.00 43 43 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAT............................................................ 23 2 1 42.00 42 42 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCAACATTGAA............................................................. 22 2 1 42.00 42 42 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAA............................................................ 21 1 1 42.00 42 42 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTG............................................................... 21 0 1 42.00 42 40 2 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAAG............................................................ 23 2 1 42.00 42 42 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAAG............................................................ 23 1 1 42.00 42 38 3 1 0 0 0
..................................................................................................ATAAAGCTAAACAACCATTGAA............................................................. 22 1 1 42.00 42 38 4 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGA.............................................................. 25 0 1 41.00 41 41 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 41.00 41 41 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAAG............................................................ 20 0 1 41.00 41 40 1 0 0 0 0
...................................................................................................TAAAGCTAGACACCCATTGAAG............................................................ 22 1 1 41.00 41 40 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGATT............................................................ 23 2 1 41.00 41 40 1 0 0 0 0
...................................................................................................ATAAGCTAGACAACCATTGAA............................................................. 21 2 1 41.00 41 41 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTA.............................................................. 21 1 1 41.00 41 38 3 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGAAG............................................................ 23 2 1 41.00 41 41 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGC................................................................................................ 23 1 1 40.00 40 40 0 0 0 0 0
...................................................................................................CAAAGCTAGACAACCATTGAAG............................................................ 22 1 1 40.00 40 38 2 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTG............................................................... 20 1 1 40.00 40 39 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAAACATTGAA............................................................. 22 2 2 39.50 79 79 0 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGA.............................................................. 21 1 1 39.00 39 37 2 0 0 0 0
...................................................................................................GAAAGCTAGACAACCATTGAAG............................................................ 22 1 1 39.00 39 39 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGA.............................................................. 21 1 1 39.00 39 32 7 0 0 0 0
...................................................................................................AAAAGCTAGACAACCATTGAA............................................................. 21 1 1 38.00 38 38 0 0 0 0 0
...................................................................................................TAAAGCTAGAAAACCATTGAAG............................................................ 22 1 1 38.00 38 38 0 0 0 0 0
..................................................................................................ATAAAGCTAGAGAACCATTGAA............................................................. 22 1 1 37.00 37 37 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAAA............................................................ 23 3 1 37.00 37 37 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGA.............................................................. 21 2 1 36.00 36 36 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAGT........................................................... 24 1 1 36.00 36 36 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAAG............................................................ 23 1 1 36.00 36 30 6 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTCAA............................................................. 22 1 1 36.00 36 36 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAA............................................................. 21 1 1 35.00 35 35 0 0 0 0 0
.................................................................................................CACAAAGCTAGACAACCATTGAA............................................................. 23 1 1 35.00 35 35 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 35.00 35 35 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAAACATTGAA............................................................. 22 2 1 34.00 34 33 1 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAT............................................................ 23 2 1 33.00 33 33 0 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 32.00 32 31 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGA.............................................................. 21 1 1 32.00 32 27 5 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCA............................................................. 22 1 1 32.00 32 2 30 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTG............................................................... 20 1 1 31.00 31 31 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGA.............................................................. 21 1 1 31.00 31 29 2 0 0 0 0
.................................................................................................CATTAAGCTAGACAACCATTGAA............................................................. 23 1 1 31.00 31 31 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAGT........................................................... 22 0 1 31.00 31 30 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGA.............................................................. 21 1 1 30.00 30 24 6 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTTAA............................................................. 22 2 1 30.00 30 30 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGA.............................................................. 21 1 1 30.00 30 24 6 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGAAG............................................................ 23 1 1 30.00 30 28 2 0 0 0 0
..................................................................................................ATAAAGCGAGACAACCATTGAA............................................................. 22 1 1 30.00 30 27 3 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGAAG............................................................ 23 1 1 30.00 30 28 2 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGAAG............................................................ 23 1 1 29.00 29 27 2 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAA............................................................ 22 2 1 29.00 29 29 0 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGAAG............................................................ 27 0 1 29.00 29 29 0 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGA.............................................................. 21 1 1 29.00 29 26 3 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTG............................................................... 20 1 1 28.00 28 28 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTG............................................................... 20 1 1 28.00 28 27 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGTT.......................................................... 25 0 1 28.00 28 28 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAATC........................................................... 24 2 1 28.00 28 28 0 0 0 0 0
..................................................................................................ATAAAGGTAGACAACCATTGA.............................................................. 21 1 1 28.00 28 28 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGA.............................................................. 21 1 1 28.00 28 27 1 0 0 0 0
..................................................................................................ATAAAGTTAGACAACCATTGAA............................................................. 22 1 1 28.00 28 27 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAAG............................................................ 23 1 1 27.00 27 4 23 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTG............................................................... 20 2 2 27.00 54 54 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGACG............................................................ 23 2 1 26.00 26 26 0 0 0 0 0
....................................................................................................AGAGCTAGACAACCATTGAA............................................................. 20 1 1 26.00 26 26 0 0 0 0 0
...........................................................................................GACGATCATAAAGCTAGACAACCATTGA.............................................................. 28 3 1 26.00 26 26 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGA.............................................................. 21 1 1 26.00 26 24 1 1 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGA.............................................................. 21 1 1 26.00 26 18 8 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAC............................................................ 23 2 1 26.00 26 26 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAT............................................................ 23 2 1 26.00 26 26 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCAG............................................................ 23 1 1 25.00 25 0 25 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGTT.......................................................... 24 0 1 25.00 25 24 1 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGAAG............................................................ 23 1 1 25.00 25 24 1 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAT............................................................ 23 3 2 25.00 50 50 0 0 0 0 0
..................................................................................................AGAATGCTAGACAACCATTGAA............................................................. 22 2 1 25.00 25 25 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGGAG............................................................ 23 1 1 25.00 25 21 4 0 0 0 0
..................................................................................................ATAAAGCTAGACAACAATTGAA............................................................. 22 1 1 25.00 25 22 3 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTGAA............................................................. 22 1 1 25.00 25 25 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAAA............................................................ 23 2 1 25.00 25 25 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGA.............................................................. 21 1 1 25.00 25 23 2 0 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGA.............................................................. 21 1 1 24.00 24 24 0 0 0 0 0
..................................................................................................ATAAAGGTAGACAACCATTGAAG............................................................ 23 1 1 24.00 24 23 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAAACATTGAAG............................................................ 23 2 1 24.00 24 24 0 0 0 0 0
...................................................................................................TAAATCTAGACAACCATTGAAG............................................................ 22 1 1 24.00 24 24 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAAG............................................................ 23 1 1 24.00 24 20 4 0 0 0 0
..............................................................TGTTTGGTCGTCCAGCCTTAGG................................................................................................. 22 1 1 24.00 24 24 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGAAG............................................................ 23 1 1 24.00 24 22 2 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGA.............................................................. 18 0 1 24.00 24 24 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGA.............................................................. 21 1 1 24.00 24 23 1 0 0 0 0
..................................................................................................CTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 24.00 24 23 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACTATTGAAG............................................................ 23 2 1 24.00 24 24 0 0 0 0 0
.......................................................................................................GCTAGACAACCATTGAAG............................................................ 18 0 1 24.00 24 24 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACTATTGA.............................................................. 21 2 1 23.00 23 23 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGG................................................................................................. 21 0 1 23.00 23 21 2 0 0 0 0
...................................................................................................TAAACCTAGACAACCATTGAAG............................................................ 22 1 1 23.00 23 23 0 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGA.............................................................. 21 1 1 23.00 23 23 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGAAG............................................................ 23 1 1 23.00 23 22 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAAT............................................................ 23 2 1 23.00 23 23 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTGAA............................................................. 22 1 1 23.00 23 16 7 0 0 0 0
..................................................................................................ATGAAGCTAGACAACCATTGAAG............................................................ 23 1 1 23.00 23 19 4 0 0 0 0
..................................................................................................ATGAAGCTAGACAACCATTGA.............................................................. 21 1 1 23.00 23 19 4 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAGG............................................................ 23 1 1 22.00 22 20 2 0 0 0 0
..................................................................................................AGAAAGCCAGACAACCATTGAAG............................................................ 23 2 1 22.00 22 22 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGT.............................................................. 21 1 1 22.00 22 18 4 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGA.............................................................. 21 1 1 22.00 22 19 3 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGC.............................................................. 21 1 1 22.00 22 5 17 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGC........................................................... 24 2 1 22.00 22 22 0 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGAAG............................................................ 25 0 1 21.00 21 21 0 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGAAG............................................................ 23 1 1 21.00 21 20 1 0 0 0 0
..................................................................................................ATAAAGCTAAACAACCATTGA.............................................................. 21 1 1 21.00 21 19 2 0 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGAAG............................................................ 23 1 1 21.00 21 19 2 0 0 0 0
..................................................................................................CTAAAGCTAGACAACCATTGAAGT........................................................... 24 1 1 20.00 20 20 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCAACATTGAAG............................................................ 23 2 1 20.00 20 20 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGAAG............................................................ 23 1 1 20.00 20 15 5 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAATT........................................................... 24 2 1 20.00 20 20 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAAG............................................................ 23 1 1 20.00 20 20 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAAA............................................................ 23 2 1 20.00 20 20 0 0 0 0 0
...................................................................................................TACAGCTAGACAACCATTGAAG............................................................ 22 1 1 20.00 20 20 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCAT................................................................. 18 1 1 19.00 19 19 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTG............................................................... 20 2 1 19.00 19 19 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAC............................................................. 22 2 1 19.00 19 19 0 0 0 0 0

Anti-sense strand reads

TCACGTACCAAGTTTGAATTTTTCTTTTGTTTTAGATATAGCATATCTCCAACGTTAATCAAAGAAACCAGCAGGTCGGAATCCACTAAAGAGACTAGTATTTCGATCTGTTGGTAACTTCAAGCAACACCGTATTCGTCGCGGATATATATTATATATATATATGTAGATACTTTTCAAA

**********************************************..((((((((.((((((..((((.(((.(((.((..((((((.....)))))).))))).))).))))..)))))).))))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total V041

embryo

 M060

embryo

 V056

head

 V049

head
.................................................................................................GTATTTCGATCTGTTGGTTTCT.............................................................. 22 2 2 1.50 3 0 0 1 2
................................................................................................AGTATTTCGATCTATTGGTATCT.............................................................. 23 2 2 1.50 3 0 3 0 0
.................................................................................................GTATTTCGATCTGTTGGTATTT.............................................................. 22 2 1 1.00 1 1 0 0 0
................................................................................................AGTATTTCGATCTATTGGTTACT.............................................................. 23 2 2 1.00 2 0 1 1 0
.................................................................................................GTATTTCGATCTATTGGTTACT.............................................................. 22 2 2 1.00 2 1 0 1 0
.................................................................................................GTATTTCGATCTCTTGGTTGCT.............................................................. 22 3 2 0.50 1 1 0 0 0
.................................................................................................GCATTTCGATCTATTGGTATCT.............................................................. 22 3 2 0.50 1 1 0 0 0
.................................................................................................GTATTTCGATCTGTTGTTCTCT.............................................................. 22 3 2 0.50 1 1 0 0 0
................................................................................................AGTATGTCGATCTGTTGGT.................................................................. 19 1 2 0.50 1 0 1 0 0
................................................................................................AGTATGTCGATCTGTTGGTTACT.............................................................. 23 2 2 0.50 1 1 0 0 0
.................................................................................................GTATTTCGATCTATTGGTATCT.............................................................. 22 2 2 0.50 1 0 1 0 0
................................................................................................AGTATTTCGATCTGTTGGTTTCT.............................................................. 23 2 2 0.50 1 1 0 0 0
.................................................................................................GTAGGTCGATCTATTGGTAACT.............................................................. 22 3 2 0.50 1 1 0 0 0
.................................................................................................GCATTTCGATCTGTTGGTTTCT.............................................................. 22 3 2 0.50 1 0 0 1 0
.................................................................................................CTATTTCGATCTATTGGTTACT.............................................................. 22 3 3 0.33 1 1 0 0 0
..................................................................................................TGTTTCCATCTGTTGGTAACA.............................................................. 21 3 3 0.33 1 1 0 0 0
.................................................................................................GTATTTCGAGCTGTTGGTTTCT.............................................................. 22 3 3 0.33 1 0 0 0 1
.................................................................................................GTATTTCTATCTGTTGGTTTCT.............................................................. 22 3 4 0.25 1 0 0 0 1
.................................................................................................GTATTTATATCTGTTGGTTACT.............................................................. 22 3 5 0.20 1 1 0 0 0
.................................................................................................GTATTTCGATCTGTTAGTCTCT.............................................................. 22 3 7 0.14 1 0 0 1 0
.................................................................................................GTCTGTCGATCTGTTGGTTACT.............................................................. 22 3 7 0.14 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20936577-20936757 - dmo-mir-4 Known_mirbase AGTGC------------A----TGGTTCAAACTTAAAAAG--AAA----------------------------------------------------ACAAAATCTATATCGTA----------TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC---T-----------------------------------------------------ATATATAATATATATATATAC---A----------------TC----------TATGAAAAGTTT--------------
droVir3 scaffold_12875:4112260-4112439 + dvi-mir-4 Known_mirbase ATTTG------------A-----------------TAACC--GTCGCAA------TATATATATATA------------------------------TATATATCTATATCATA----------TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGC---T-----------------------------------------------------ATAATCT-----------------G----------------ACCATATATATATCTGATATTCTC--------------
droGri2 scaffold_5621:2935-3110 + dgr-mir-4-2 Known_mirbase AGG-C-----------AA----CAGTTTTGGTT------------------------------------------------------AAATAATAAATC--GATCTATGTTTTA----------TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGAT---T-----------------------------------------------------ATATAGT-----------------GTATATAATATTCCTGA---------------TATATGTGT--------------
droWil2 scf2_1100000004514:1651584-1651729 - dwi-mir-4 Known_mirbase CAAGC---TAGTG---------------------AGAA-----------GAATTAAC-----------------------TTTAACCAAAT----------------------------------GGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT---T-----------------------------------------------------TA----AGG--------ACATCAA-------------------------------------------------------
dp5 3:12677346-12677556 - dps-mir-4 Known_mirbase AA---------------------------AAGTGAAAAAA--GTGACAA------AGTTTGTGTACACTCCACGAGTTG---------------------------ATACCTTA----------TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACACCA------ACACCCACACCCACCCTCACATCCATC------------------------------------------------------CCAGTGT--------------
droPer2 scaffold_2:8906095-8906314 + dpe-mir-4 Known_mirbase AGTGACGGA-------A----GT-GACAAAAGTGAAAAAA--GTGACAA------AGTGTGTGTACACTCCACGAGTTG---------------------------ATACCTTA----------TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACACCAACACCAACACCCATACCCACCCTCAC----------------------AT----------------------------------------------------------
droAna3 scaffold_13266:9731484-9731651 + dan-mir-4 Known_mirbase TGG-A-----------A----AT-G----------------------------TA----------------A--AGT-------TTCAAATAATATACC-----------AATA----------TAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCT---T-----------------------------------------------------ATTAACAAGAATTTCAAATGT---G----------------AC--------------------------TATTCGAAAA
droBip1 scf7180000396427:874456-874600 + -GTGT-------------------------------------------------------------------------------TTCAAATA------------------------GTGTTTCTTAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTT---T-----------------------------------------------------ATTTATGAAAATTTAAAAAATTAA-------------------------------------------------------
droKik1 scf7180000302679:89197-89357 - -GTGC------------AG--TT-G----------------------------TA----------------ACAAGTTAATATATCCAAA----------------------CA----------AGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT---A-----------------------------------------------------TGAT---------------AT--------------TCAGGA---------------TA----TGT--CCTAAACCA-AG
droFic1 scf7180000454039:847903-848019 - AGTGA------------AA----------------------------------------------------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT---A-----------------------------------------------------CAAT-----------------AAAGT--------------------------------T--------------------
droEle1 scf7180000491201:2013835-2013973 - AGTGA------------AA----------------------------------------------------------------------------------------------GAGGCAATCCCCAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATT--TA-----------------------------------------------------CAAGCCAAT--------ACAAAAAGT--------------------------------T--------------------
droRho1 scf7180000780066:73782-73914 + AGTGA------------AAA-----------------------------G----------------------------------------------------------------AAGACATCCAAGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT---A-----------------------------------------------------CAATTCAAT--------AAAA----------------------------------------------------------
droBia1 scf7180000302143:3059670-3059795 - AGTGG---------------------------------------------------------------------------------------------------------------GCCATCAAACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-----------------------------------------------------CAAGCCAT---------AAAT----------------------------------------------------------
droTak1 scf7180000415384:84170-84315 + AAAGT---TAATGTGA-----AT-G------------------------T----------------------------------------------------------------AGGCAATCTAACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-----------------------------------------------------CAAGCCAGT--------GAATTAAG---------------------------------------T--------------
droEug1 scf7180000409474:2396962-2397116 + AA-GT---TA-------------------------AAAAGCA-------AAAATA-------------------------------------------------------------AAGATCTAAAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---T-----------------------------------------------------CAAGCCAAG----------------T--------------------------------TAAGTGTTACCAAAACT----
dm3 chr2R:15548763-15548901 - dme-mir-4 Known_mirbase AGTGA------------AAAT--------------------------------------------------------T--------AAAATA-----------------TTATG----------GAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-----------------------------------------------------CGAGTCAAG--------AAATTATG------------------------------------------------------
droSim2 2r:16196026-16196172 - dsi-mir-4 Known_mirbase AGTGA------------AACT----------------------------------------------------------------TCAAATA-----------------TTCTG----------TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-----------------------------------------------------CAAGTCAAG--------AAATCAAGT--------------------------------TAAGTTA--------------
droSec2 scaffold_1:13063495-13063630 - dse-mir-4 Known_mirbase AGTGA------------AACT----------------------------------------------------------------TCAAATA-----------------TTCTG----------TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-----------------------------------------------------CAAGTCAGG--------AAATC---------------------------------------------------------
droYak3 2R:13623887-13624036 + dya-mir-4 Known_mirbase AGTGA------------AATT---------------------------------------------------------A-----ATCAGATA-------------------CTG----------GGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATTA-----------------------------------------------------CGGGTCAAG--------AAATCGAGT--------------------------------TAAGTGT--------------
droEre2 scaffold_4845:9749014-9749151 - der-mir-4 Known_mirbase AGTGA------------AAAC-----------------------------------------------------------------AAAAGA-----------------TACTG----------TAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC---A-----------------------------------------------------AGAGTTAGC--------AAATCCAG------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGTGC------------A----TGGTTCAAACTTAAAAAG--AAA----------------------------------------------------ACAAAATCTATATCGTA----------TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC---T-----------------------------------------------------ATATATAATATATATATATAC---A----------------TC----------TATGAAAAGTTT--------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................221144666.00144666102689251419582
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................21149844.00498443271215471212
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................23144021.00440210173300422880
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................23117180.0017180038800167920
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2219277.00927725130087620
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2315791.00579101080056830
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................2015554.00555422100153401
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................2312097.00209701270019691
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................2411485.0014850620114220
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................2211470.0014700140014560
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................2311316.001316030013130
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................2111294.0012940240012700
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................1811163.001163000011630
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................2311056.0010560100010460
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................221549.0054908005410
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................221546.00546164004810
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................221544.00544017005270
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................241437.0043704004330
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................221430.00430028004020
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................201396.0039601003950
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................241328.0032802003260
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................201294.0029403002910
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................231218.0021800002180
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................221210.0021004002060
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................241209.00209033001751
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................241202.00202012000820
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................241170.0017001001690
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................241155.0015501001540
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................241151.0015102001490
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAG...............................................................................................................................................................211150.0015000001500
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................231149.00149031001180
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................251143.0014307900640
...................................................................................................................................................................................ATAAAGCTAGACAACCAC....................................................................................................................................................................182132.5026500002650
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................231131.0013106001250
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................191124.0012408001160
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................221122.0012200001220
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................191114.0011400001140
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT................................................................................................................................................................231105.0010505001000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................221101.0010101000910
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................21193.009312900630
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................23184.00840500790
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................24183.00830200810
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC................................................................................................................................................................23174.00740000740
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................26172.00720000720
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................22170.007001200580
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................21166.00660600600
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................19161.00610000610
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT...............................................................................................................................................................23150.00500000500
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................23149.00490100480
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................24148.00480200460
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.................................................................................................................................................................23148.00480000480
................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................25145.00450100440
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAA...............................................................................................................................................................21142.00420000420
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................21142.00420200400
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.................................................................................................................................................................25141.00410000410
......................................................................................................................................................................................AAGCTAGACAACCATTGAAG...............................................................................................................................................................20141.00410100400
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGATT...............................................................................................................................................................23141.00410100400
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC...................................................................................................................................................................................................23140.00400000400
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT..............................................................................................................................................................22131.00310100300
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................27129.00290000290
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.............................................................................................................................................................25128.00280000280
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC..............................................................................................................................................................24128.00280000280
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT.............................................................................................................................................................24125.00250100240
......................................................................................................................................................................................AAGCTAGACAACCATTGA.................................................................................................................................................................18124.00240000240
........................................................................................................................................................................................GCTAGACAACCATTGAAG...............................................................................................................................................................18124.00240000240
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21123.00230200210
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................21122.00220400180
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................21122.00220170050
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................25121.00210000210
droVir3
ATTTG------------A-----------------TAACC--GTCGCAA------TATATATATATA------------------------------TATATATCTATATCATA----------TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGC---T-----------------------------------------------------ATAATCT-----------------G----------------ACCATATATATATCTGATATTCTC--------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................22118755.00187550039860010000008571000110330210234041811271346973466022023210167167123941424688331817100107990326102019819916220100001259382404139205
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2313202.003202001160000000000213000000000011100001270423916476110067359565032732151271813110003210011002242821510000016058602535
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................2113014.003014003203000000000010000001011201110111403757821700000318455514454500016484142000710350000003336291321
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2312797.002797011198600000000150000100000000000012202629944600000261822251728163110665000301541000013115700000058231377
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................201982.0098200157300000000000000000000102010002034430000112111210209261511129000436420000911240000002123241117
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................241957.009570005000000000200000001000010000198032163242358000003200010000110000320000030400000031102
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................231604.0060400025900000000010000000000000000001061131000022719141519253844130102021000008840000000351711107
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................221592.005920003820000000001000000000000000000605717140000187620427543400094500000121600000098773
...................................................................................................................................................................................ATAAAGCTAGACAACCA.....................................................................................................................................................................171455.004550000000000000000000000000000000000000000004784841334058254126111470002800000000000000010000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................251330.003300004000000000000000000000001000017018699279000013110111200000000331000002200000001000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................231318.00318000160000000000000000000000000000190112346480000551409456391110000490000000400000001200
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................231277.002770009100000000010000000000000000000000010000016717119151212184750002670000020610000051012
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................241275.00275000140000000000000000000000000000305302317000003216222252315186834000440000001000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................231258.002580005800000000010000000000000000002013210000014171061118618121810170007190000000200000011201
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................241198.00198000500000000002000000000000000000401441001001711173814101153380008130000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................181149.00149000660000000000000000000000000000000220000018759107397302000800000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................221132.0013200040000000000000000000000000000503714100000120115334252321000650000004400000060200
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................221125.001250006700000000000000000000000000000000110000010130212401000011000003012000000240000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................211123.0012300088000000000000000000000000000000014400000010000010000000060000000800000033301
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................221116.001163207000000000000000000000000000050518171700000623024143602000530001000000000000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................23197.009700084000000000000000000000000000010124100000000000000000000010000000100000010001
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................24195.009500033000000002001000000000002000000145200002414306323113000110000000301000011202
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................22171.007100040000000000000000000000000000010113000000320010001010000020000030400000061100
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................23152.00520102000000000000000000000000000000031400000325634121240000440000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................21147.00472300002000000000000000000000000010154101000000214041120000651000000000000000000
............................................................................................................................TAG-AGGTTGCAATTAGTTT.........................................................................................................................................................................................................................19136.00360000000000000100000000010000000030276600004120000000000000000000000000000010011
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20135.003500032000000000000000000000000000000010000000000000000000000000000000100000010000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................22132.003200024000000000000000000000000000000110300000010000000000000010000000000000010000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................22124.002400013000000000000000000000000000000000000000100001001000000120000000200000011010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................23121.00210008000000000000000000000000000000113300000000001000000000000000000400000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA................................................................................................................................................................................................25121.002100000000000000000000000000000000100351100000000000000000000000000000000000010000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................24120.002000010000000000000000000000000000000010000000001111011000000300000000000000000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................24119.001900018000000000000000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20119.001900017000000000000000000000000000000000000000000000000000000010000000100000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................22118.00180009000000000000000000000000000010110200000001000000000000110000000000000001000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................24118.001800014000000000000000000000000000000001200000000001000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21118.00180002000000000000000000000000000000125200000010101000000000110000000000000010000
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19117.00170004000000000000000000000000000000102100000101000110110000100000000000000010100
.................................................................................................................A----------TAG-AGGTTGCAATTAGTTT.........................................................................................................................................................................................................................20115.00150001000000001000000000000000000000012700001000000000000000000000000100000001000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTC..................................................................................................................................................................................................23115.00150001000000000000000000000000000010000000001810100100000000100000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTC..................................................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000110041000000400000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................22111.00110009000000000000000000000000000000000000000000000000000000020000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCAC....................................................................................................................................................................18110.001000010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................2319.0090009000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCT........................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000011020000300000000000002000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA................................................................................................................................................................................................2619.0090000000000000000000000000000000000162000000000000000000000000000000000000000000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2618.0080006000000000000000000000000000000002000000000000000000000000000000000000000000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2417.0070007000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT...............................................................................................................................................................2317.0070005000000000000000000000000000000000000000000000000000000000000010000000010000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................2617.0070000000000000000000000000000010000000100000003000100000000000000000000000010000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................2217.0070005000000000000000000000000000000000000000000000001000000000000000000000010000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................2216.0060000000000000000000000000000000000000100000010000100001000110000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................2516.0060000000000000000000000000000000000010400000000000000100000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.............................................................................................................................................................2516.0060000000000000000000000000000000000000200000010001000020000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................2116.0060004000000000000000000000000000000000000000000000000000000020000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................2016.0060001000000000000000000000000000000000000000001000000001000200000000000000000100
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................2315.0050002000000000200000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTCT.................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000100000000400000000000000000000
.............................................................................................................................AG-AGGTTGCAATTAGTTT.........................................................................................................................................................................................................................1815.0050000000000000000000000000000000000110300000000000000000000000000000000000000000
................................................................................................................TA----------TAG-AGGTTGCAATTAGTTT.........................................................................................................................................................................................................................2115.0050000000000000000000000000000000010001300000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA...............................................................................................................................................................................................2615.0050000000000000100000000000000000010021000000000000000000000000000000000000000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................1915.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2315.0050000000000000000000000000000000000020200000000100000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT.................................................................................................................................................................................................2515.0050001000000000000000000000000000000002000000000001010000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................2415.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2514.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................2114.0040002000000000000000000000000000000000000000000000000000000020000000000000000000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.................................................................................................................................................................2514.0040002000000000000000000000000000000010000000000000000000000010000000000000000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAG...............................................................................................................................................................2114.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATC......................................................................................................................................................................................3514.0040000000000000000000000000000000000000000000220000000000000000000000000000000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................2114.0040002000000000000000000000000000000000100000000000000000000010000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2014.0040000000000000000000000000000000000010300000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA..............................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000011000000100000000100000000000
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................1914.0040002000000000000000000000000000000001100000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC..............................................................................................................................................................2414.0040001000000000000000000000000000000000000000001100100000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC..............................................................................................................................................................2414.0040003000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGAA.............................................................................................................................................................2413.0030000000000000000000000000000000000000000000120000000000000000000000000000000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAA...............................................................................................................................................................2113.0030002000000000000000000000000000000000000000000000000000000000000010000000000000
......................................................................................................................................................................................AAGCTAGACAACCATTGA.................................................................................................................................................................1813.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCT........................................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000100000010000000000000000100000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC...............................................................................................................................................................2313.0030001000000000000000000000000000000000000000000000000000000000000000000000110000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.............................................................................................................................................................2213.0030001000000000000000000000000000000000100000000000100000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTT..................................................................................................................................................................................................2413.0030001000000000000000000000000000000000000000000010001000000000000000000000000000
droGri2
AGG-C-----------AA----CAGTTTTGGTT------------------------------------------------------AAATAATAAATC--GATCTATGTTTTA----------TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGAT---T-----------------------------------------------------ATATAGT-----------------GTATATAATATTCCTGA---------------TATATGTGT--------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................2122.00413
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................2221.00211
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2120.50101
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2320.50101
droWil2
CAAGC---TAGTG---------------------AGAA-----------GAATTAAC-----------------------TTTAACCAAAT----------------------------------GGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT---T-----------------------------------------------------TA----AGG--------ACATCAA-------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................22147107.00471070297146590219
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................21127809.00278090149127479180
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................23110791.001079103501073521
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................2011716.0017160100168719
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................231596.005960205931
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................231538.005380405331
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................241496.004960004951
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................241280.002800002800
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................221238.002380002371
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................211171.001710901602
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................221169.001690001690
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................231167.001671001660
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................221140.001400001391
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................221113.001130101120
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................22174.00740006113
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................23154.0054000540
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20150.0050040460
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19143.0043010411
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................22140.0040000400
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................23137.0037010360
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................23130.0030020280
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................21128.0028000280
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21127.0027000270
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................22125.0025000250
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT................................................................................................................................................................23123.0023000230
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................22121.0021000210
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................23121.0021010200
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................24118.0018000180
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................21118.0018000180
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.................................................................................................................................................................23116.0016010150
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................25116.0016000160
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................20114.0014000131
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................21113.0013000130
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20113.0013020110
.........................................................................................................................................................................................................GTTCGTTGTGGCATTATCGCCA..........................................................................................................................................22110.0010000100
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................24110.001001090
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................2319.00900090
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................1818.00800080
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................1918.00800080
...................................................................................................................................................................................ATAAAGCTAGACAACCATTA..................................................................................................................................................................2018.00800080
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAGA...............................................................................................................................................................2317.00700070
..........................................................................................................................................TAGTTTCTTTGGTCGTCCAGC..........................................................................................................................................................................................................2117.00700070
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................2117.00700061
..........................................................................................T----------------------------------GGCGGGTTGCAATTAGTTT.........................................................................................................................................................................................................................2017.00700070
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.............................................................................................................................................................2517.00700070
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT.................................................................................................................................................................................................2415.00500050
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................1915.00500050
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................2215.00501040
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2515.00500050
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAG..............................................................................................................................................................2414.00400040
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2114.00401030
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................2214.00400040
...................................................................................................................................................................................ATAAAGCTAGACAACCATTT..................................................................................................................................................................2014.00400040
......................................................................................................................................................................................AAGCTAGACAACCATTGA.................................................................................................................................................................1814.00400040
..................................................................................................................................................TTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2214.00400040
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................2414.00400040
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................2413.00301020
...................................................................................................................................................................................ATAAAGCTAGACAACCATGA..................................................................................................................................................................2013.00300030
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA................................................................................................................................................................................................2513.00300030
.........................................................................................................................................................................................CTAGACAACCATTGAAGTTCGT..........................................................................................................................................................2213.00300030
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2413.00300030
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTG..................................................................................................................................................................2213.00300030
..........................................................................................................................................TAGTTTCTTTGGTCGTCCAGCC.........................................................................................................................................................................................................2213.00310020
.................................................................................................................................................................................TCATAAAGCTAGACAACCATT...................................................................................................................................................................2113.00300030
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC..............................................................................................................................................................2412.00200020
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...................................................................................................................................................................................................2212.00200020
.........................................................................................AT----------------------------------GGCGGGTTGCAATTAGTTT.........................................................................................................................................................................................................................2112.00200020
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.............................................................................................................................................................2512.00200020
................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2512.00200020
......................................................................................................................................................TCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................1812.00200020
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGT..............................................................................................................................................................2112.00200020
....................................................................................................................................................................................TAAAGCTAGACAACCATTG..................................................................................................................................................................1912.00200020
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAA...............................................................................................................................................................2112.00200020
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................2112.00200020
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................2212.00200020
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATA..............................................................................................................................................................2411.00100010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................2311.00100010
dp5
AA---------------------------AAGTGAAAAAA--GTGACAA------AGTTTGTGTACACTCCACGAGTTG---------------------------ATACCTTA----------TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACACCA------ACACCCACACCCACCCTCACATCCATC------------------------------------------------------CCAGTGT--------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................22145829.0045829013014050324399403040
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................21111063.0011063063383616206300000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2315556.0055560945109135200000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2314487.00448701143732563600000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................2011573.00157301001247022500001
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2211166.001166023914222700000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................231822.0082202373206700000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................231546.005460950902800000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................221523.005230051301000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................211335.0033505625502400000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................231334.0033406223010500000
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................181313.00313003130000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................231264.00264022590300000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................241254.0025401319022200000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................241215.002150314606600000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................221142.00142021340600000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................241102.0010203970200000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................22182.00820203003200000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................22181.008104721400000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................25175.0075061105800000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................23171.0071024702100010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................22165.0065004502000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20161.0061034190800000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20157.005702540100000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................22153.0053022202900000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................22148.004802430300000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................23147.004700440300000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................22147.004701400600000
...................................................................................................................................................................................ATAAAGCTAGACAACCAC....................................................................................................................................................................18242.508500850000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................24142.004200420000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................22139.003901300800000
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19137.003705250700000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................21133.003307202400000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................21132.0032011201900000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................24127.002702240100000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................23126.002600230300000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................24126.002600251000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................23124.002402801400000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................21123.002300140900000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................23122.002200180400000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................24121.00210490800000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21120.00200590600000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC................................................................................................................................................................23115.001500150000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT..............................................................................................................................................................22113.00130090400000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................19113.001303100000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAG...............................................................................................................................................................21113.001301110100000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT................................................................................................................................................................23113.001300120100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC..............................................................................................................................................................24112.001200120000000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................24111.001100110000000
................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................25111.001100110000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................24110.001000100000000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.................................................................................................................................................................23110.001000100000000
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................1918.0080240200000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................2118.0080070100000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2618.0080080000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2018.0080200301020
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2316.0060000600000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................2116.0060020400000
............................................................................................................................TTG-TGGTTGCAATTAGTTT.........................................................................................................................................................................................................................1916.0060010500000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT...............................................................................................................................................................2316.0060060000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC..............................................................................................................................................................2415.0050050000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT.............................................................................................................................................................2415.0050050000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................2515.0050040100000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................2315.0050050000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA..............................................................................................................................................................2415.0050030200000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGATA...............................................................................................................................................................2315.0050020300000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.............................................................................................................................................................2215.0050050000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTC..................................................................................................................................................................2015.0050050000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2415.0050040100000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGT..............................................................................................................................................................2115.0050010400000
droPer2
AGTGACGGA-------A----GT-GACAAAAGTGAAAAAA--GTGACAA------AGTGTGTGTACACTCCACGAGTTG---------------------------ATACCTTA----------TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---ACCTACCACAACCACACCCACACCAACACCAACACCCATACCCACCCTCAC----------------------AT----------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................221705.00705107154915222
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................211489.004894523630637
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................211181.0018117704000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................231137.00137258100040
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................221107.001079737000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................231101.0010120668052
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................20168.00683459020
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................24155.00552053000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................23142.00423921000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21131.00312902000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................22130.00308119011
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................23124.00241716000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................22118.00181007001
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................24116.0016907000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................23115.00152013000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................25114.0014507020
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................20111.00111001000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................2119.009034002
...............................................................................................................................................TCTTTGGTCGTCCAGCCT........................................................................................................................................................................................................1818.008800000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................2418.008206000
..............................................................................................................................................TTCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2218.008800000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2015.005302000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................2215.005401000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................2315.005401000
........................................................................................................................................................................TTTCTCTGATCATAAAGCTAGACAACC......................................................................................................................................................................2714.004400000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2214.004003010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2314.004102010
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG...................................................................................................................................................................................................2313.003300000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................2113.003002010
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................2013.003021000
................................................................................................................................................CTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................1913.003300000
..............................................................................................................................................TTCTTTGGTCGTCCAGCCT........................................................................................................................................................................................................1912.002200000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................2412.002200000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2312.002002000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................2212.002001001
...............................................................................................................................................TCTTTGGTCGTCCAGCCTT.......................................................................................................................................................................................................1912.002200000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................2212.002200000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG...................................................................................................................................................................................................2211.001100000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................2411.001001000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT................................................................................................................................................................2311.001001000
..............................................................................................................................................TTCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................2211.001001000
................................................................................................................................................CTTTGGTCGTCCAGCCTT.......................................................................................................................................................................................................1811.001100000
...............................................................................................................................................TCTTTGGTCGTCCAGCCC........................................................................................................................................................................................................1811.001100000
............................................................................................................................TTG-TGGTTGCAATTAGTTT.........................................................................................................................................................................................................................1911.001001000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................2311.001100000
.....................................................................................................................................................GTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................1911.001001000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................2211.001000010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................2211.001000010
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................2311.001001000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA...................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................2111.001001000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................2111.001001000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2211.001000010
........................................................................................................................................................................................GCTAGACAACCATTGAAG...............................................................................................................................................................1811.001001000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC................................................................................................................................................................2311.001100000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAG................................................................................................................................................................................................2611.001001000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................2111.001010000
droAna3
TGG-A-----------A----AT-G----------------------------TA----------------A--AGT-------TTCAAATAATATACC-----------AATA----------TAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCT---T-----------------------------------------------------ATTAACAAGAATTTCAAATGT---G----------------AC--------------------------TATTCGAAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................2212705.00270512022712911157
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................2112622.00262279208043910410
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2311441.001441191214198325
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................201739.0073927567137116
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................231313.003131326534100
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................221128.0012869722012
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................181125.0012501250000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................24181.00811727001
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................23163.00630630000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................23153.005324110000
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19142.00422319000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................21141.004112227000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................23132.00321310000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................21131.00310256000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................23129.00290244010
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................24125.00254183000
...................................................................................................................................................................................ATAAAGCTAGACAACCAC....................................................................................................................................................................18125.00250250000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................25123.00234710200
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................24122.00221713100
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................22121.00210210000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................22121.00210201000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20118.0018980001
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................24115.00153120000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................23114.0014770000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................22113.0013751000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................22112.00120111000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................21111.0011065000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................22111.0011191000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2419.009081000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................2418.008071000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................2418.008071000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................2017.007070000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................2217.007133000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................2317.007132100
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2117.007403000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTT..................................................................................................................................................................2016.006042000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.............................................................................................................................................................2215.005041000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAG...............................................................................................................................................................2115.005050000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................1915.005050000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGT..............................................................................................................................................................2115.005023000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................2314.004040000
........................................................................................................................................................................................GCTAGACAACCATTGAAG...............................................................................................................................................................1814.004040000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................2114.004040000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................2313.003030000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................2213.003021000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.................................................................................................................................................................2313.003030000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2613.003030000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT...............................................................................................................................................................2313.003012000
................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2513.003030000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT................................................................................................................................................................2313.003021000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................2113.003030000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................2113.003300000
......................................................................................................................................................................................AAGCTAGACAACCATTGA.................................................................................................................................................................1812.002020000
....................................................................................................................................................................................TAAAGCTAGACAACCATTG..................................................................................................................................................................1912.002200000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2412.002020000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTC..................................................................................................................................................................2012.002020000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................2312.002020000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC..............................................................................................................................................................2411.001010000
.........................................................................................................................................................................................................GTTCGTTGTGGCAATTGCGGC...........................................................................................................................................2111.001010000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTG.............................................................................................................................................................2511.001010000
............................................................................................................................TAA-AGGTTGCAATTAGTTT.........................................................................................................................................................................................................................1911.001010000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.................................................................................................................................................................2511.001010000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................AAAGCTAGACAACCATTG..................................................................................................................................................................1811.001010000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC..............................................................................................................................................................2411.001001000
................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAG................................................................................................................................................................2511.001010000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC................................................................................................................................................................2311.001010000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2511.001010000
droBip1
-GTGT-------------------------------------------------------------------------------TTCAAATA------------------------GTGTTTCTTAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTT---T-----------------------------------------------------ATTTATGAAAATTTAAAAAATTAA-------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
-GTGC------------AG--TT-G----------------------------TA----------------ACAAGTTAATATATCCAAA----------------------CA----------AGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT---A-----------------------------------------------------TGAT---------------AT--------------TCAGGA---------------TA----TGT--CCTAAACCA-AGSizeHit CountTotal NormTotal
No Reads
droFic1
AGTGA------------AA----------------------------------------------------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT---A-----------------------------------------------------CAAT-----------------AAAGT--------------------------------T--------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGTGA------------AA----------------------------------------------------------------------------------------------GAGGCAATCCCCAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATT--TA-----------------------------------------------------CAAGCCAAT--------ACAAAAAGT--------------------------------T--------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGTGA------------AAA-----------------------------G----------------------------------------------------------------AAGACATCCAAGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT---A-----------------------------------------------------CAATTCAAT--------AAAA----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGTGG---------------------------------------------------------------------------------------------------------------GCCATCAAACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-----------------------------------------------------CAAGCCAT---------AAAT----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAGT---TAATGTGA-----AT-G------------------------T----------------------------------------------------------------AGGCAATCTAACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---A-----------------------------------------------------CAAGCCAGT--------GAATTAAG---------------------------------------T--------------SizeHit CountTotal NormTotal
No Reads
droEug1
AA-GT---TA-------------------------AAAAGCA-------AAAATA-------------------------------------------------------------AAGATCTAAAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT---T-----------------------------------------------------CAAGCCAAG----------------T--------------------------------TAAGTGTTACCAAAACT----SizeHit CountTotal NormTotal
No Reads
dm3
AGTGA------------AAAT--------------------------------------------------------T--------AAAATA-----------------TTATG----------GAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-----------------------------------------------------CGAGTCAAG--------AAATTATG------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................221305216.0030521600004118186430792000000000000000100000000508020000101933003802000273100000000000000000411402010136556921784026812236227201121337714168011385617251600260012992710008000221201011000000120092946681060554585034310867094000000001004571024008727010505050020001230000140000001860000003601070313231285725732177100305000013892426201014202224011113842024134023035610761824167115244101551013101521865575011016230223282102114311622223362028653216334645252761221120
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................21152770.00527700000115437146000000000000200300000000198000001050132000021000011100000000000000000031022834294117721328200031702140218131011110325261901041498127501000001300001000000000053212483704121388111003211430000000010082001008703020720000019031600000000000050001000210362421491116124813900178000018341692111112002012111095040101321202251211110632695443243963147111326519843286230152401112170442711634012712064339932211872013110
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................23119460.001946000000052416600000000000000000000000043010000030300001301000000000000000000000000100076119243529977010001003005110202011015000951005800000000100000000000000015413313249420437121104073000000000000301000100010000000010002000000000000603000000000200012101280164004600004092421110000000200000300000000000301142751054212101132310098671292112024020000010581022002230021042292102020
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................24112143.00121430000107212682000000000000000000000000311101000000000000010001000000000000000000000000278914841981641930001013001002232430102931370003031011660000000000000000000000002179161173423138000000004000000000000020100001200100000000000100000100000000000000000010000020404000000001298200000000001000011000101000101000000000000000000001438500100000000000000401000100000000000010110
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................2014710.0047100000100153000000000000000000000000281500000001020000010000030000000000000000000020001941711402000001000001211000007300130402300000000100000000000000061641602416100000000000000000000001000101000100000020100000001000000000000000000000010201031002200006111200000000000010003000000000002100011130001000002043441406101000001000040009020000410004011230015270
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2314653.00465300000051311300000000000000000000000070000000102100002010003000000000000000000000000315761961495700000100000000130200310000493034000000012000000000000000602435061846000110001100000000000120100000000000000000000100000000000000000000000010011002004102210070000864800000000001000105000010000001001100001010001101002194201201012000000020000000000000000025270000220
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................2314128.0041280000002752610000000000000000000000003600000000000000001000000000000000000000000000007152339346467100100000000000100001721200713037000000000000000000000000187811582390440000010000000000000000000001000000000000000000000000000000000000000001000020006090010000023170011000000000000100000000010000000000000000000000218000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................2213620.003620000010416440000000000000000000000001000000000000000000000000000000000000000000000031211291641761000000000003000000115273004810200000000000000000000000002946999451831310000000300000000000000000000000000000000000000000000000000000000000200000100090400010000687900000000001000000000000000000000000012000000000003792600200000000000100001010000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2213518.0035180000006185200000000000000000000000012000000000200000000000000000000000000000000000035665142127531000000010012200000061110071905400000000100000000000000081391221292121000000000000000000002000000010010000000000010000000000000000000000002000201028021240130000836700000000002000015200000000001001050204021010010001645241010000000000000000010000121000043180011000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................2212231.0022310000001044126000000000000000000000000610000000101000000000000000000000000000000000000505863653121501002000010143001300028170001551504500000000100010000000000078284006100000000000000000000010000000000000000000100100000000000030000000000100000000220132001000069101000000000000000000000000000000000000000000000000035400000000000000000010000000000000010000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2511835.001835000010123370000000000000000000000000500000000010000000000010000000000000000000000004831761043516800020000000010050002818200621018000000000000000000000000321212224081000000000000000000000000000000000000000000000000000000000000000000000000000002030000000043360000000000000000000000000000200000000001000000000173100000000000000000000000000000000050000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2211331.0013310000003103000000000000000000000000030000000000010001000000000000000000000000000000952354401300000000100000000000200003710200000000010000000000000007113357000000000000000000000000000000000000000000000000000000000000000000000000000000200100600004332000000000000000110000000000000000200320301000000074811000000000100000000001000000000000030000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2311322.00132200000016200000000000000000000000002030000000100000000000000000000000000000000000094343635700000000000010000000110004203000000000000000000000000149327480300000000000000000000000000000000000000000000000000000000002000000000000000000020000030000231800000000000000000000000000000000000001000000000005066700100000000000000000000000000000010000010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................2211237.001237000000040000000000000000000000000000000000001000010000000000000000000000000000000106195137900000300000000000000000009007000000000000010000000000346917829100000000000000000000000000000000000000000000000000000000000000000000000100000000032008000061500000000000000000000000000001000000001010100000105923400000000000000001000000000000000010100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................2211236.001236000000001100000000000000000000000010000000000000000000000000000000000000000000000229143100000000000000000000000000104000000000000000000000000513371850000000000000000000000100000000000000000000000000000000000000000000000000000000011001000043000000000000000000000000000000000100000000000000010382200001000000000000000000000000000010000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................2111200.00120000000032263000000000000000000000000900000000010000000000031000000000000000000000001824210694270000100000000200010585000524043000000000000000000000000441615000000000000000000000001000000000000000000000000000000000000000000000000000000020240170000153000000000001000001000000000000000010001001000000003828400000000000000000011000000000000220000020
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................211691.0069100000008130000000000000000000000001990000000100000000000000000000000000000000000000664732402700010000100000000000000001650500000000000000000000000047413800000000000000000000000000000000000000000000000000000000000000000000000000000000304000000002933000000000000000000000000000000000000030000000000039200000000000000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................211632.00632000000021300000000000000000000000026010000000110000000000000000000000000000000000019103321600010000000240000000000001890500000000000010000000000027183040300000000000000000000000000000000000000000000100000040000000003000000000200000003000100001291831000100000100000100000000000000001010000000000000331900000000000000000000000000000000110000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................231537.0053700001001200000000000000000000000008010000010000000000000000000000000000000000000029164530000000000000000000000000400000000000000000000000000083878260000000000000000000000000000000000000000000000000000000000000000000000000000110300000100004300000000000000000000000000000000000001110000000002653000001000000000000000000000000000000000000
............................................................................................................................GAG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................191520.005200000000000000000000000000000000000300000000000000000000000000000000000000000000001526636107100000000000000200019200001500440000000000000000000000000518060000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000057100000000000000000000000000000000010000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................241514.0051400000001140000000000000000000000000300000000000000000000000000000000000000000000008420191480000000000000000000002000150040000000000000000000000004577107516000000100000000000000000000000000000000000000000000000000020000000000000000000001000000001011000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................231484.0048400000001010000000000000000000000001000000000000000000000000000000000000000000000062812000000000000000000020100040020000000000000000000000004525563811000000000000000000000000000000000000000000000000000000000000000000000000001000300110200002300000000000000000000000000000000000000000000000002419000000000000000000000000000000000120021000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................221475.00475000000212000000000000000000000000002000000000000000000000000000000000000000000000060109126010000000000000000005300040060000000000000000000000002376100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000000000000000200000000000000000000000000000000310600000000000000000000000000000000020100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................241450.004500000000100000000000000000000000000000000000000000000100000000000000000000000000002001200000000000000000000010001007000000000000000000000000126517170000000000000000000000000000000000000000000001000000000000010001000000000001020100000300001300000000000000000000000000000000000101000000000001481400000001000000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................231414.00414000000061000000000000000000000000010000000000000000000000000000000000000000000000411484176000002000000001000000000014103000000000000000000000000133279144000000000000000000000000000000000000000000000000000000000000000000000000000000103000000001722000000000000000010000010100000000000000000000000031300000000000000000001000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................201407.00407000000000000000000000000000000000021100000000000000000000000000000000000000000000004334000000000000020000000000004000000000000000000000000000262333381100000000000000000000010000000000000000000000000000000000000000000000000200000000000000001417000000000000000001000000000000000000010000000000017000100000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA................................................................................................................................................................................................251395.0039500000022000000000000000000000000003000000000000000000000000000000000000000000000010069164900000000000000000000080001120900000000000000000000000032228001000000000000000000000000000000000000000000000000000000000000000000000000000001010000000050000000000000000000000000000000000000000000000000072000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................211280.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000030211000000000000000000000000000003000000000000000000000000171690000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004700000000000000000000000000000000010000000000100001912300000000000001000000000000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................201279.0027900000000020000000000000000000000004200000000000000000000000000000000000000000000001305917100001000000000100002000008001000000000000000000000000318720000000000000000000000100000000000000000000000000000000000000000000000000000001013003000010160000000000000000100000000000000002000000000001000442500000000000000000000010001000000010000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT.................................................................................................................................................................................................241222.00222000000110000000000000000000000000000000000000000000000000000000000000000000000000256424730000020000000007000002000510000000000000000000000000012222822000000000000000000000000000000000000000000000000000000000000000000000000000000201000000002100000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................241206.002060000000000000000000000000000000000000000000000000000000000000000000000000000000002311000000000000000000000000000000000000000000000000000000730711140000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000072010000000000000000000000000000001000000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................221198.001980000000000000000000000000000000000100000000000000000000000000000000000000000000001784170000000000000000000000000300100000000000000000000000016718000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000360000000000000000000000000000000000000000000000000102800000000000000000000000000000001030000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................231192.00192000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005113000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000160100000000000000000000000000000000000000000000000154900000000000000000000000000000000000000000
.................................................................................................................G----------GAG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................201178.001780000001200000000000000000000000000120000000000000000000000000000000000000000000000261100230000000000000000000012130002103000000000000000000000000228000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000058000000000000000000000000000000000000000000
................................................................................................................TG----------GAG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................211170.0017000000000000000000000000000000000005000000000000000000000000000000000000000000000061001300000000000000000400160000400400000000000000000000000021525600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................191147.0014700000000000000000000000000000000009000000000100000000000000000000000000000000000010350000000000000000000000000001000000000000000000000000001102660000000000000000000000000000000000000000001000000000000000030000000000000000000000000000001190001000000000000000000100000000000000100000001000371601000000000000000100000000000100000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................221143.0014300000000000000000000000000000000000000000000000000000000000000000000000000000000061793100000000000000000000000004000000000000000000000000000426800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035000000000020000000000000000000000000000000000000063800100000000000000000000000000000000000010
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................201116.001160000000000000000000000000000000000820000000000000000000000000000000000000000000000108200000000000000000000000000200000000000000000000000000000002000000000000010000000000000000000000000000000000000000000000000000000000000000001000000007300000000000000000000000000000000000000000000000001500000000000000010000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................231106.001060000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000038100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000000000000000000100010000000000080500000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................211103.00103000000000000000000000000000000000000000000000000000000000000000000000000000000000008500000000000000000000000000100100000000000000000000000016183010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000810000000000000000000001000000010000000000000000000030900000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................211100.0010000000000010000000000000000000000002000000000000000000000000000000000000000000000010210000000000000000000000000030010000000000000000000000000142000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000250000001000100000000000000000000001000000000000000462500000000000000000000000000000000100000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGC.................................................................................................................................................................................................24187.00870000000000000000000000000000000000001000000000000000000000000000000000000000000001725011100000000000000000000000000000000000000000000000000000178310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................23186.0086000000010000000000000000000000000000000000000000000000000000000000000000000000000913307000000000000000000000000010000000000000000000000000009121180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000
.............................................................................................................................AG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................18175.0075000000000000000000000000000000000000000000000000000000000000000000000000000000000154041800000000000000000000980003101000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20170.0070000000021000000000000000000000000010000000000000000000000000000000000000000000000154163300000000000000000000000001002000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGCC................................................................................................................................................................22169.00690000000000000000000000000000000000000000000000000000000000000000000000000000000001008000000000000000000000000000000000000000000000000000000113200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000053000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGATA...............................................................................................................................................................23167.0067000000002000000000000000000000000000000000000000000000000000000000000000000000000103200000000000000000000000000000000000000000000000000000011016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000026200000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................25157.00570000000000000000000000000000000000100000000000000000000000000000000000000000000001600150000000000000000000010000100000000000000000000000000008790000000000000000000000100000000000000000000000000000000000000000000000000002010100000000001000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................19150.00500000000000000000000000000000000000000000000000000000000000000000000000000000000005200000000000000000000000000001000000000000000000000000000026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032200000000000000000000000000000000000000000
..............................................................................................................TATG----------GAG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................23143.00430000000100000000000000000000000000000000000000000000000000000000000000000000000002000700000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT.................................................................................................................................................................................................25141.0041000000012000000000000000000000000000000000000000000000000000000000000000000000000934420000000000000000000030000201000000000000000000000000011500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAGA...............................................................................................................................................................23141.00410000000200000000000000000000000000000000000000000000000000000000000000000000000004001000000000000000000000000001000000000000000000000000000007000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000022200000000000000000000000000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................23140.00400000000001000000000000000000000000000000000000000000000000000000000000000000000000060200000000000000000000000000000000000000000000000000000138000000000000000000000000000000000000000000000000000000000000000000000000000100002010000000011000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.............................................................................................................................................................25140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000171900000000000000000000000000000000000000000000100000000000000000000000000000000000001000100000000000000000000000000000000000000000200000000000003000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA...............................................................................................................................................................................................26138.0038000000050000000000000000000000000000000001000000000000000000000000000000000000000840010000000000000000000000000200000000000000000000000000018300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTTT.................................................................................................................................................................................................24136.00360000000000000000000000000000000000000000000000000000000000000000000000000000000002330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................22135.00350000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000041000000000000000100000000000000000000100000000000022200000000000000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA................................................................................................................................................................................................26135.0035000000010000000000000000000000000000000000000000000000000000000000000000000000000971100000000000000000000000000000500000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000100000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGG.................................................................................................................................................................................................24133.0033000000131000000000000000000000000000000000000000000000000000000000000000000000000521080000000000000000000002000200000000000000000000000000011210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT................................................................................................................................................................23133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000100000000000000000000000003000000000000000000000000000000000000000000
...............................................................................................................ATG----------GAG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................22131.00310000000000000000000000000000000000100000000000000000000000000000000000000000000006000000000000000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT..................................................................................................................................................................................................23130.00300000000200000000000000000000000000000000000000000000000000000000000000000000000006153000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................18128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000002000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000014500000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTA..................................................................................................................................................................................................23127.00270000002400000000000000000000000000000000000000000000000000000000000000000000000001240000000000000000000000030000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGT....................................................................................................................................................................................................22125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000008131000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...................................................................................................................................................................................................22124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000100000000000000000000000005701000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
droSim2
AGTGA------------AACT----------------------------------------------------------------TCAAATA-----------------TTCTG----------TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-----------------------------------------------------CAAGTCAAG--------AAATCAAGT--------------------------------TAAGTTA--------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................22167041.00670410019911842819111232322303137373719000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................21125945.002594500814443789551359787893324303000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2312764.002764008114001321500895025504000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................2011723.001723013850411772602029702000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2511292.001292002000117463260301500000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2111188.00118840110810000273211500000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2411139.00113900700015354350616400000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2311061.0010610020080341210146048900000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................221759.007591071500000101901400000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................231524.00524003490001078870900000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................231389.00389313460003091401111000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................241347.003471028510001292001000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................211243.002430023600010210300000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................221225.002253010500030475001700000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................221207.00207003800020443109200000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................231172.0017200700011825003001000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................231139.0013900470000041440700000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................21194.009400070000363701400000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................22172.00720001000139260500000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................20157.0057005400000110100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19148.00480000020025170400000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................22140.00400020000014170700000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................24137.0037005000001980302000
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................18135.0035002033000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCT........................................................................................................................................................................................................18129.0029002900000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................21128.0028001600000240600000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20127.0027000200001370500000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................20126.0026102300000010100000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................22125.0025002100000220000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20122.00220000000012100000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA...................................................................................................................................................................................................23122.0022001700000230000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................22119.001900100001480500000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................21118.0018000000001001700000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...................................................................................................................................................................................................22117.0017001700000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................24115.001500000000780000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................22114.0014001000002101000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG...................................................................................................................................................................................................22113.0013001300000000000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................23113.001300000000430600000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................22112.001200010100230500000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................2319.00900000000130500000
..........................................................................................................................................................................................TAGACAACCATTGAA................................................................................................................................................................1519.00900000000090000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................2118.00800000000210500000
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................1918.00800000001240100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................2418.00800110000100500000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG...................................................................................................................................................................................................2317.00700700000000000000
........................................................................................................................................................................................GCTAGACAACCATTGAA................................................................................................................................................................1717.00700000000250000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2216.00600000000230100000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGA...................................................................................................................................................................................................2216.00600500000000100000
....................................................................................................................................................................................TAAAGCTAGACAACCATTG..................................................................................................................................................................1916.00600010000220100000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2316.00600100000120200000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGG.................................................................................................................................................................................................2515.00500500000000000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................1915.00500000000220100000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTT.......................................................................................................................................................................................................1915.00500500000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC...................................................................................................................................................................................................2315.00500500000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT.................................................................................................................................................................................................2415.00500100000000400000
.......................................................................................................................................................................................AGCTAGACAACCATTGAA................................................................................................................................................................1815.00500000000320000000
.........................................................................................................................................................................................CTAGACAACCATTGAA................................................................................................................................................................1614.00400000000310000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................1914.00400400000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.............................................................................................................................................................2514.00400100000020001000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT..................................................................................................................................................................................................2314.00400400000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAC.....................................................................................................................................................................................................2114.00400400000000000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA..............................................................................................................................................................2414.00400300000010000000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................2214.00400400000000000000
..........................................................................................................................................TAGTTTCTTTGGTCGTCCAGC..........................................................................................................................................................................................................2114.00400300000010000000
................................................................................................................................................CTTTGGTCGTCCAGCCTT.......................................................................................................................................................................................................1813.00300300000000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGG.................................................................................................................................................................................................2413.00300200000000100000
......................................................................................................................................................................................AAGCTAGACAACCATTGA.................................................................................................................................................................1813.00300000000210000000
...................................................................................................................................................................................ATAAAGCTAGACAACCA.....................................................................................................................................................................1713.00300000000210000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................2312.00200000000110000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGACT...............................................................................................................................................................................................2612.00200200000000000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAA...............................................................................................................................................................2112.00200100000010000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC..............................................................................................................................................................2412.00200000000020000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGC.................................................................................................................................................................................................2512.00200000000020000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTC.......................................................................................................................................................................................................1912.00200200000000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAC................................................................................................................................................................................................2612.00200000200000000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGT....................................................................................................................................................................................................2212.00200200000000000000
droSec2
AGTGA------------AACT----------------------------------------------------------------TCAAATA-----------------TTCTG----------TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC---A-----------------------------------------------------CAAGTCAGG--------AAATC---------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................22119825.00198255411218407865
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................21110325.001032518039901241
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2311484.001484322141238
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2311312.001312220125139
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................2011212.001212131118315
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................241431.00431204254
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................221322.003222031010
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................251210.00210102054
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................221129.00129101262
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................211105.00105150864
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................231103.0010320974
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................21191.009110900
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................23163.006300621
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................22157.005750520
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................23151.005110491
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19149.004950431
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................22134.003410303
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................22133.003300303
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................24131.003110300
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21130.003030270
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................23128.002800262
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20128.002830250
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20127.002760210
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................23126.002600251
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................23122.002200202
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................22122.002200220
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................20121.002100210
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................23121.002140170
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................24119.001900163
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................22117.001700161
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................21116.001610141
............................................................................................................................TGG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................19116.001610132
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................24115.001500150
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT.................................................................................................................................................................................................24113.001300130
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................21113.001300121
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................22112.001200111
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................19110.001000100
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................2118.0080071
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................2417.0070070
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT.................................................................................................................................................................................................2516.0060060
...................................................................................................................................................................................ATAAAGCTAGACAACCATTA..................................................................................................................................................................2015.0050050
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................2215.0050050
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................1815.0050050
.................................................................................................................G----------TGG-CGGTTGCAATTAGTTT.........................................................................................................................................................................................................................2014.0041030
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................2614.0040040
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2214.0040040
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................2114.0040040
.....................................................................................................................................................................................AAAGCTAGACAACCATTG..................................................................................................................................................................1814.0040040
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................1913.0030030
....................................................................................................................................................................................TAAAGCTAGACAACCATTG..................................................................................................................................................................1913.0030030
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................2013.0031020
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA...................................................................................................................................................................................................2313.0030030
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAG...............................................................................................................................................................2113.0030030
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAA...............................................................................................................................................................2113.0030030
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC...............................................................................................................................................................2312.0020020
................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2512.0020020
...................................................................................................................................................................................ATAAAGCTAGACAACCATGA..................................................................................................................................................................2012.0020020
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2412.0020020
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................2112.0021010
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.................................................................................................................................................................2312.0020020
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.............................................................................................................................................................2211.0010010
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT................................................................................................................................................................2311.0010010
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2411.0010001
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2511.0010010
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT..................................................................................................................................................................................................2311.0010010
droYak3
AGTGA------------AATT---------------------------------------------------------A-----ATCAGATA-------------------CTG----------GGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATTA-----------------------------------------------------CGGGTCAAG--------AAATCGAGT--------------------------------TAAGTGT--------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................22143469.004346903040260314932340000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................23113202.00132020131143617520100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................21111677.00116770279630200041330000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2313785.0037850134533282100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................2011936.0019360417561740200000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2211589.0015890113462420000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................231988.0098800941460100000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................231701.0070100678230000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................241574.0057400509650000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................231559.0055900483760000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................251375.0037501673070000000
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................181362.003620036200000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................221357.003570035250000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................241261.0026100452160000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................231255.002550125040000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................241254.0025401201520000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................211246.002460123780000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................221245.0024511202410000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................231120.0012000104160000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................221104.001040066370100000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................21197.00973053410000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................24190.0090008910000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................23188.0088008800000000
...................................................................................................................................................................................ATAAAGCTAGACAACCAC....................................................................................................................................................................18187.0087008700000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................24183.0083008210000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................23183.00830147350000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................22182.00820061210000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20175.0075007500000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................24174.0074006950000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................22170.0070026530000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................22163.0063006030000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................24156.0056005420000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20147.0047014420000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19139.0039002971200000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................22139.0039003360000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21138.0038023060000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT...............................................................................................................................................................22137.0037013240000000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................26127.0027002700000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................22126.0026002510000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAG...............................................................................................................................................................21123.0023002210000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...................................................................................................................................................................................................22122.0022002200000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................24120.0020002000000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................19115.0015001410000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................21115.0015001050000000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................23115.0015001230000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................23112.0012001110000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT..............................................................................................................................................................22112.0012001020000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC...................................................................................................................................................................................................23112.0012001200000000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................24112.0012001200000000
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................19110.0010001000000000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................20110.001000640000000
............................................................................................................................GGG-CAGTTGCAATTAGTTT.........................................................................................................................................................................................................................19110.001000460000000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAGT..............................................................................................................................................................21110.001000820000000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2319.00900180000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................2119.00900540000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC..............................................................................................................................................................2419.00900900000000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT...............................................................................................................................................................2318.00800800000000
........................................................................................................................................................................................GCTAGACAACCATTGAAG...............................................................................................................................................................1817.00700700000000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAA...............................................................................................................................................................2117.00700700000000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................2417.00700700000000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.................................................................................................................................................................2316.00600600000000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.................................................................................................................................................................2516.00600600000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................2016.00610410000000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAG...............................................................................................................................................................2016.00600510000000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT................................................................................................................................................................................................2616.00600420000000
droEre2
AGTGA------------AAAC-----------------------------------------------------------------AAAAGA-----------------TACTG----------TAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC---A-----------------------------------------------------AGAGTTAGC--------AAATCCAG------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA................................................................................................................................................................22120463.0020463148616794021641540
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.................................................................................................................................................................2115807.00580748743841926360
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2314440.00444029734780662120
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................2311617.0016179013600164120
...................................................................................................................................................................................ATAAAGCTAGACAACCATTG..................................................................................................................................................................201727.0072736596092030
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG...............................................................................................................................................................221517.0051743376097010
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAA................................................................................................................................................................211185.0018572100013000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA................................................................................................................................................................231140.00140413303000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC................................................................................................................................................................221133.00133012607000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC...............................................................................................................................................................231123.00123411009000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT...............................................................................................................................................................23199.0099581013000
...................................................................................................................................................................................ATAAAGCTAGACAACCAT....................................................................................................................................................................18188.008808800000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................25151.0051126031110
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................22148.00482313012000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAA................................................................................................................................................................20146.004614401000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................23143.0043131011000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.................................................................................................................................................................22141.004104001000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT..............................................................................................................................................................24141.004113406000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................24138.00381115012000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGA.................................................................................................................................................................20136.0036161307000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................24133.003353024010
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................21131.003173021000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA...............................................................................................................................................................22129.002932303000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................22127.002726018010
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA..............................................................................................................................................................24124.002421903000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT................................................................................................................................................................22123.002321407000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA..............................................................................................................................................................24123.002302102000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................24121.002102001000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...................................................................................................................................................................................................23119.00193709000
...................................................................................................................................................................................ATAAAGCTAGACAACCATT...................................................................................................................................................................19119.00197903000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAG...............................................................................................................................................................21116.001611401000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..................................................................................................................................................................................................23116.00168602000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.................................................................................................................................................................21111.00115501000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG....................................................................................................................................................................................................21111.00117202000
...................................................................................................................................................................................ATAAAGCTAGACAACCAC....................................................................................................................................................................18210.502102100000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA...............................................................................................................................................................24110.001001000000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2618.0080800000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGA.................................................................................................................................................................1918.0080701000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC...............................................................................................................................................................2218.0080602000
.................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA................................................................................................................................................................2418.0080701000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG................................................................................................................................................................2217.0070304000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA...............................................................................................................................................................2317.0070700000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTC..................................................................................................................................................................2017.0070601000
................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.....................................................................................................................................................................................................2016.0061005000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTA......................................................................................................................................................................................................2015.0051103000
.................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.................................................................................................................................................................................................2315.0052201000
..................................................................................................................................................................................CATAAAGCTAGACAACCATTG..................................................................................................................................................................2114.0040400000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.................................................................................................................................................................2114.0040301000
.....................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT..............................................................................................................................................................2214.0041201000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.................................................................................................................................................................2114.0040004000
......................................................................................................................................................................................AAGCTAGACAACCATTGAA................................................................................................................................................................1914.0040400000
...............................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA................................................................................................................................................................................................2613.0032001000
....................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................2313.0030300000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.................................................................................................................................................................2513.0030300000
...................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC..............................................................................................................................................................2413.0030201000
...............................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG...............................................................................................................................................................2712.0020200000
......................................................................................................................................................................................AAGCTAGACAACCATTGAAA...............................................................................................................................................................2012.0020200000

Generated: 10/20/2015 at 10:16 PM