ID:

dmo-mir-318

 Coordinate:

scaffold_6540:5225344-5225412 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.8 -28.7 -28.4

Flybase annnotation

Antisense to intron [Dmoj\GI23565-in]; pre_miRNA [Dmoj\mir-318-RM]; utr5 [utr5_plus_10186]; Antisense to CDS [Dmoj\GI23565-cds]; miRNA [Dmoj\miR-318-RA]

No Repeatable elements found

Sense Strand Reads

TCGCGTTGCGGTTTTGAACTTGAGATTTGAAATGTGATTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGTCCAAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCAACTTACGGGACTGGACAGGCACGACTTGAAGTCTT

*****************************************(((((((..(((((((((((.((.(((((((((.......(((((....)))))))))))))).)).)))))))))))...))))))).*************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V110

male body		 V056

head

 V049

head

 M060

embryo

 V041

embryo
.............................................................................................TCACTGGGCTTTGTTTATCTCA...................................................... 22 0 1 90827.00 90827 89758 901 88 67 6 7
.............................................................................................TCACTGGGCTTTGTTTATCTC....................................................... 21 0 1 11568.00 11568 11351 157 23 28 9 0
..............................................................................................CACTGGGCTTTGTTTATCTCA...................................................... 21 0 1 7938.00 7938 7938 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAT..................................................... 23 0 1 7421.00 7421 7397 17 2 3 2 0
.............................................................................................TCACTGGGCTTTGTTTATCT........................................................ 20 0 1 5279.00 5279 5116 97 29 37 0 0
..............................................................................................CACTGGGCTTTGTTTATCTC....................................................... 20 0 1 1004.00 1004 1004 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCAT..................................................... 22 0 1 675.00 675 675 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAA..................................................... 23 1 1 631.00 631 625 4 1 0 1 0
.............................................................................................TCACTGGGCTTGGTTTATCTCA...................................................... 22 1 1 495.00 495 495 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCT........................................................ 19 0 1 424.00 424 424 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCT...................................................... 22 1 1 368.00 368 362 4 1 1 0 0
...............................................................................................ACTGGGCTTTGTTTATCTCA...................................................... 20 0 1 322.00 322 321 1 0 0 0 0
.............................................................................................TCACTGGGCTTAGTTTATCTCA...................................................... 22 1 1 211.00 211 211 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATC......................................................... 19 0 1 195.00 195 188 3 3 1 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATT.................................................... 24 1 1 118.00 118 117 1 0 0 0 0
............................................................................................CTCACTGGGCTTTGTTTATCTCA...................................................... 23 1 1 108.00 108 107 0 1 0 0 0
.............................................................................................TCACTGGGCTTTGTTTAT.......................................................... 18 0 1 96.00 96 94 1 1 0 0 0
.............................................................................................TCACTGGGCTTCGTTTATCTCA...................................................... 22 1 1 91.00 91 91 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTT....................................................... 21 1 1 88.00 88 88 0 0 0 0 0
........................................................GGATACACTAAGTTCAGTTTTG........................................................................................... 22 0 1 75.00 75 73 0 0 0 2 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAC..................................................... 23 1 1 75.00 75 73 0 0 0 2 0
............................................................................................TTCACTGGGCTTTGTTTATCTCA...................................................... 23 1 1 70.00 70 70 0 0 0 0 0
............................................................................................GTCACTGGGCTTTGTTTATCTCA...................................................... 23 1 1 70.00 70 70 0 0 0 0 0
............................................................................................ATCACTGGGCTTTGTTTATCTCA...................................................... 23 0 1 66.00 66 66 0 0 0 0 0
.............................................................................................TCACTGGGCTTGGTTTATCTC....................................................... 21 1 1 66.00 66 66 0 0 0 0 0
...............................................................................................ACTGGGCTTTGTTTATCTCAT..................................................... 21 0 1 56.00 56 56 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCAA..................................................... 22 1 1 54.00 54 54 0 0 0 0 0
.............................................................................................TCACTGGGCTTGGTTTATCTCAT..................................................... 23 1 1 47.00 47 47 0 0 0 0 0
...............................................................................................ACTGGGCTTTGTTTATCTC....................................................... 19 0 1 45.00 45 45 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGCTTATCTCA...................................................... 22 1 1 44.00 44 42 2 0 0 0 0
.............................................................................................TCGCTGGGCTTTGTTTATCTCA...................................................... 22 1 1 37.00 37 35 1 0 1 0 0
................................................................................................CTGGGCTTTGTTTATCTCA...................................................... 19 0 1 37.00 37 37 0 0 0 0 0
.............................................................................................TCACTGGGCCTTGTTTATCTCA...................................................... 22 1 1 33.00 33 33 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTACCTCA...................................................... 22 1 1 33.00 33 31 1 0 1 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCT...................................................... 21 1 1 31.00 31 31 0 0 0 0 0
.............................................................................................TCACTGGGCTTGGTTTATCT........................................................ 20 1 1 30.00 30 30 0 0 0 0 0
...............................................................................................ACTGGGCTTTGTTTATCTCATT.................................................... 22 1 1 30.00 30 29 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCG...................................................... 22 1 1 29.00 29 27 2 0 0 0 0
.............................................................................................TCACTGGGCTTAGTTTATCTC....................................................... 21 1 1 28.00 28 28 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAG..................................................... 23 1 1 28.00 28 28 0 0 0 0 0
.............................................................................................CCACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 28.00 28 27 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCCCA...................................................... 22 1 1 26.00 26 25 1 0 0 0 0
..............................................................................................CACTGGGCTTTATTTATCTCA...................................................... 21 1 1 26.00 26 26 0 0 0 0 0
.................................................................................................TGGGCTTTGTTTATCTCA...................................................... 18 0 1 24.00 24 24 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTGTCTCA...................................................... 22 1 1 23.00 23 21 1 1 0 0 0
.............................................................................................TCACTGGGCTTTGTTCATCTCA...................................................... 22 1 1 23.00 23 23 0 0 0 0 0
.............................................................................................TCACTGGGCTCTGTTTATCTCA...................................................... 22 1 1 23.00 23 22 0 0 1 0 0
.............................................................................................GCACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 22.00 22 22 0 0 0 0 0
.............................................................................................TCACTGGGCTTTTTTTATCTCA...................................................... 22 1 1 22.00 22 22 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTGATCTCA...................................................... 22 1 1 20.00 20 20 0 0 0 0 0
.............................................................................................TCACTGGGCTTAGTTTATCTCAT..................................................... 23 1 1 20.00 20 20 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCC...................................................... 22 1 1 19.00 19 17 0 0 1 0 1
.............................................................................................TCACCGGGCTTTGTTTATCTCA...................................................... 22 1 1 18.00 18 18 0 0 0 0 0
.............................................................................................TCACTGGTCTTTGTTTATCTCA...................................................... 22 1 1 17.00 17 16 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTCTATCTCA...................................................... 22 1 1 16.00 16 14 1 0 0 0 1
...............................................................................................ACTGGGCTTTGTTTATCTCATA.................................................... 22 0 1 16.00 16 16 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCATT.................................................... 23 1 1 16.00 16 16 0 0 0 0 0
.............................................................................................TCACTGGGCTTAGTTTATCT........................................................ 20 1 1 15.00 15 15 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATATCA...................................................... 22 1 1 14.00 14 13 1 0 0 0 0
.............................................................................................TCACTGTGCTTTGTTTATCTCA...................................................... 22 1 1 14.00 14 12 1 1 0 0 0
.............................................................................................TCACTGGGCTGTGTTTATCTCA...................................................... 22 1 1 13.00 13 13 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTAATCTCA...................................................... 22 1 1 13.00 13 13 0 0 0 0 0
...............................................................................................ACTGGGCTTTGTTTATCT........................................................ 18 0 1 13.00 13 13 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTTA...................................................... 22 1 1 13.00 13 12 1 0 0 0 0
.............................................................................................ACACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 12.00 12 12 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTA....................................................... 21 1 1 12.00 12 12 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAAA.................................................... 24 1 1 11.00 11 10 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATTTCA...................................................... 22 1 1 11.00 11 11 0 0 0 0 0
.............................................................................................TCACTGGGCTTCGTTTATCTC....................................................... 21 1 1 11.00 11 11 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATA.................................................... 24 0 1 11.00 11 11 0 0 0 0 0
.............................................................................................TAACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 10.00 10 9 0 1 0 0 0
.............................................................................................TCATTGGGCTTTGTTTATCTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATC......................................................... 18 0 1 10.00 10 10 0 0 0 0 0
...........................................................................................ATTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 10.00 10 10 0 0 0 0 0
.............................................................................................TCACTGGACTTTGTTTATCTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0 0
..............................................................................................CACTGGGCTTTCTTTATCTCA...................................................... 21 1 1 9.00 9 9 0 0 0 0 0
............................................................................................TTCACTGGGCTTTGTTTATCTCAT..................................................... 24 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................TTACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 9.00 9 8 1 0 0 0 0
.............................................................................................TCACTGGCCTTTGTTTATCTCA...................................................... 22 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................TCACTGGGCTTTATTTATCTCA...................................................... 22 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................TCACTTGGCTTTGTTTATCTCA...................................................... 22 1 1 9.00 9 8 1 0 0 0 0
.............................................................................................TCACTGGGCTTCGTTTATCTCAT..................................................... 23 1 1 9.00 9 9 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTAACTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTT....................................................... 20 1 1 8.00 8 8 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTAA...................................................... 22 1 1 8.00 8 7 1 0 0 0 0
.............................................................................................TCACTGGGATTTGTTTATCTCA...................................................... 22 1 1 8.00 8 5 1 1 1 0 0
................................................................................................CTGGGCTTTGTTTATCTCAT..................................................... 20 0 1 8.00 8 8 0 0 0 0 0
..............................................................................................CACTGGGCTTTTTTTATCTCA...................................................... 21 1 1 8.00 8 8 0 0 0 0 0
............................................................................................CTCACTGGGCTTTGTTTATCT........................................................ 21 1 1 8.00 8 8 0 0 0 0 0
.............................................................................................TCTCTGGGCTTTGTTTATCTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0 0
.............................................................................................TCCCTGGGCTTTGTTTATCTCA...................................................... 22 1 1 8.00 8 8 0 0 0 0 0
............................................................................................ATCACTGGGCTTTGTTTATCTC....................................................... 22 0 1 8.00 8 8 0 0 0 0 0
......................................................TGGGATACACTAAGTTCAGTTT............................................................................................. 22 0 1 7.00 7 7 0 0 0 0 0
.............................................................................................TCACTAGGCTTTGTTTATCTCA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
............................................................................................CTCACTGGGCTTTGTTTATCTC....................................................... 22 1 1 7.00 7 7 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTACCTCA...................................................... 21 1 1 7.00 7 7 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCA........................................................ 20 1 1 7.00 7 7 0 0 0 0 0
.............................................................................................TCACTGGGCTATGTTTATCTCA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
.........................................................GATACACTAAGTTCAGTTTTG........................................................................................... 21 0 1 7.00 7 7 0 0 0 0 0
.............................................................................................TCACTGAGCTTTGTTTATCTCA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
.............................................................................................TCACTCGGCTTTGTTTATCTCA...................................................... 22 1 1 7.00 7 6 0 0 1 0 0
............................................................................................ATCACTGGGCTTTGTTTATCTCAT..................................................... 24 0 1 7.00 7 7 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCGCA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCAC..................................................... 22 1 1 6.00 6 6 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTATATCTCA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0
............................................................................................TTCACTGGGCTTTGTTTATCTC....................................................... 22 1 1 6.00 6 6 0 0 0 0 0
................................................................................................CTGGGCTTTGTTTATCTCATT.................................................... 21 1 1 6.00 6 6 0 0 0 0 0
.............................................................................................TCACTGGGCCTTGTTTATCT........................................................ 20 1 1 6.00 6 6 0 0 0 0 0
.............................................................................................GCACTGGGCTTTGTTTATCTC....................................................... 21 1 1 6.00 6 5 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTTT...................................................... 22 2 1 6.00 6 6 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGCTTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTTTCTCA...................................................... 22 1 1 5.00 5 4 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATC.................................................... 24 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCC........................................................ 20 1 1 5.00 5 5 0 0 0 0 0
...........................................................................................ACTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGCTTCGTTTATCT........................................................ 20 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................CCACTGGGCTTTGTTTATCTC....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
..............................................................................TCAGATGTCCAAGCATCACTGGGCT.................................................................. 25 0 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGTTTTGTTTATCTCA...................................................... 22 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGCCTTGTTTATCTC....................................................... 21 1 1 5.00 5 4 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGGTTATCTCA...................................................... 22 1 1 5.00 5 5 0 0 0 0 0
............................................................................................GTCACTGGGCTTTGTTTATCTC....................................................... 22 1 1 5.00 5 5 0 0 0 0 0
...........................................................................................CTTCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTACCTCAT..................................................... 23 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTG....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
................................................................................................CTGGGCTTTGTTTATCTC....................................................... 18 0 1 5.00 5 5 0 0 0 0 0
............................................................................................CTCACTGGGCTTTGTTTATCTCAT..................................................... 24 1 1 5.00 5 5 0 0 0 0 0
.............................................................................................TCACTGGGCCTTGTTTATCTCAT..................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..............................................................................................CACTGGTCTTTGTTTATCTCA...................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...............................................................................................ACTGGGCTTTGGTTATCTCA...................................................... 20 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGGCGTTGTTTATCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGTCTTTGTTTATCT........................................................ 20 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................GCTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACGGGGCTTTGTTTATCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTGA...................................................... 22 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCGCTGGGCTTTGTTTATCTCAT..................................................... 23 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATATCAT..................................................... 23 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCAGTGGGCTTTGTTTATCTCA...................................................... 22 1 1 4.00 4 3 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTGTATCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0 0
..............................................................................................CACTGGGCCTTGTTTATCTCA...................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................ACACTGGGCTTTGTTTATCTC....................................................... 21 1 1 4.00 4 3 1 0 0 0 0
..............................................................................................CACTGGGCTTTGCTTATCTCA...................................................... 21 1 1 4.00 4 4 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCATA.................................................... 23 0 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATTT................................................... 25 2 1 4.00 4 4 0 0 0 0 0
.............................................................................................GCACTGGGCTTTGTTTATCTCAT..................................................... 23 1 1 4.00 4 4 0 0 0 0 0
............................................................................................TTCACTGGGCTTTGTTTATCT........................................................ 21 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATT......................................................... 19 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCGCTGGGCTTTGTTTATCTC....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................CATCACTGGGCTTTGTTTATCTCA...................................................... 24 0 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGGCTCTGTTTATCT........................................................ 20 1 1 4.00 4 3 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATGTCA...................................................... 22 1 1 4.00 4 3 1 0 0 0 0
............................................................................................ATCACTGGGCTTTGTTTATCT........................................................ 21 0 1 4.00 4 4 0 0 0 0 0
.............................................................................................TCACTGGGCTGTGTTTATCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................GCACTGGGCTTTGTTTATCT........................................................ 20 1 1 3.00 3 2 1 0 0 0 0
..............................................................................................CACTGGGCTTTGATTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTCTCT........................................................ 20 1 1 3.00 3 1 0 0 2 0 0
.............................................................................................TCACTGGGCTTTTTTTATCTC....................................................... 21 1 1 3.00 3 2 0 0 1 0 0
.............................................................................................TCACTGGGCTTTGATTATCTCA...................................................... 22 1 1 3.00 3 2 0 1 0 0 0
.................................................................................................TGGGCTTTGTTTATCTCAT..................................................... 19 0 1 3.00 3 3 0 0 0 0 0
............................................................................................GTCACTGGGCTTTGTTTATCT........................................................ 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGCTTATCT........................................................ 20 1 1 3.00 3 1 0 1 1 0 0
............................................................................................GTCACTGGGCTTTGTTTATCTCAT..................................................... 24 1 1 3.00 3 3 0 0 0 0 0
..............................................................................................CGCTGGGCTTTGTTTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTCTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATTTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGCGCTTTGTTTATCTCA...................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTCATCTCAT..................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..............................................................................................CACTTGGCTTTGTTTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................CCTCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTCATCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................GGTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCTT..................................................... 23 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TGACTGGGCTTTGTTTATCTCA...................................................... 22 1 1 3.00 3 2 0 0 0 1 0
.............................................................................................TCATTGGGCTTTGTTTATCTCAT..................................................... 23 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................GTTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACAGGGCTTTGTTTATCTCA...................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..............................................................................................CACTGGGCTCTGTTTATCTCA...................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATATC....................................................... 21 1 1 3.00 3 2 1 0 0 0 0
.............................................................................................TCAATGGGCTTTGTTTATCTCA...................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGCTTATCTCAT..................................................... 23 1 1 3.00 3 3 0 0 0 0 0
............................................................................................TTCACTGGGCTTTGTTTATCTCAA..................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTCTTTATCTCA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..............................................................................TCAGATGTCCAAGCATCACTGGGC................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
.............................................................................................TCACTGGGCTCTGTTTATCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCCCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATA......................................................... 19 1 1 2.00 2 2 0 0 0 0 0
............................................................................................CTCACTGGGCTTTGTTTATCTCT...................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................CGTCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGTTTTGTTTATCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TATCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTATTTATCT........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACCGGGCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCGTTGTTTATCT........................................................ 20 1 1 2.00 2 1 0 0 1 0 0
..............................................................................TCAGATGTCCAAGCATCACTGGGCTTTGT.............................................................. 29 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCG........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGCCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..............................................................................TCAGATGTCCAAGCATCACTGGG.................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATAA................................................... 25 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATAT........................................................ 20 1 1 2.00 2 1 0 0 1 0 0
..............................................................................................CACTGGGCTTCGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATG.................................................... 24 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................AACTGGGCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..............................................................................TCAGATGTCCAAGCATCACTGGGCTTT................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCTTGGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCTTTGGTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACGGGGCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 1 0 1 0 0 0
..............................................................................TCAGATGTCCAAGCATCACTGG..................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTGTCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCCTTGTTTATCTC....................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCG...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..............................................................................TCAGATGTCCAAGCATCACTGGGCTTTG............................................................... 28 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTCTATCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTAGTTTATCTCT...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTATGTTTATCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTACCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................AAGGTCACTGGGCTTTGTTTATCTCA...................................................... 26 3 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCTTTATTTATCTCAT..................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCTT..................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................GTCACTGGGCTTTGTTTATCTCT...................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..............................................................................TCAGATGTCCAAGCATCACTGGGA................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGTCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCACA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCATTGTTTATCTCA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACCGGGCTTTGTTTATCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AATCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................AGTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTTGGCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TGACTGGGCTTTGTTTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAAT.................................................... 24 2 1 2.00 2 1 1 0 0 0 0
...............................................................................................TCTGGGCTTTGTTTATCTCAT..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTCTATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTGGTTTATCTCATT.................................................... 24 2 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCTTTCTTTATCTCAT..................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCTCACTGGGCTTTGTTTATCTCA...................................................... 24 2 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTAATCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................GACTGGGCTTTGTTTATCTCA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................ACTGGGCTTTGCTTATCTCA...................................................... 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCCCTGGGCTTTGTTTATCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTTTTTATCTCAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................CACTGGGCTTTATTTATCTC....................................................... 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTAGTTTATCTCAA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................AAGTCACTGGGCTTTGTTTATCTCA...................................................... 25 3 1 2.00 2 2 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCGT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................CCACTGGGCTTTGTTTATCT........................................................ 20 1 2 1.50 3 2 1 0 0 0 0
...........................................................................................TTTCACTGGGCTTTGTTTATCTC....................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTATGTTTATCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CCCTCACTGGGCTTTGTTTATCTC....................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................CACTGGGGTTTGTTTATCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTAA.......................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATGATC................................................. 27 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TAACTGGGCTTTGTTTATCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAGAGC.................................................. 26 3 1 1.00 1 0 0 0 0 1 0
..........................................................................................CGGTCACTGGGCTTTGTTTATCTCA...................................................... 25 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCCA....................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................TCACTGCGCTTTGTTTATCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................GGGATACACTAAGTTCAGTTTT............................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................AACTCACTGGGCTTTGTTTATCTC....................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................CGTCACTGGGCTTTGTTTATCTC....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CACTGGGCTGTGTTTATCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCATTTT.................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................CAGTCACTGGGCTTTGTTTATCTC....................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGCTCACTGGGCTTTGTTTATCTCA...................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................TCCTGGGCTTTGTTTATCTCA...................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGGTTTGTTTATCTCA...................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTTTTTATCTTA...................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TCACTGGGCATTGTTTATCT........................................................ 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTGTCTCAA..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTGGTTTATCTCAA..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................GGGATACACTAAGTTCAGTTTG............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTTGGCTTTGTTTATCTCAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTAATCTCAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTATCTCAG..................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCACA.................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CACTGGGCTTTGTTTGTCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................CTCACTGGGCTCTGTTTATCTCA...................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................CACTGGGCGTTGTTTATCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CACTGGGCTTAGTTTATCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGACTTTGTTTATCTCAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................GGATACACTAAGTTCAGTTTT............................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGCCCTTTGTTTATCTCA...................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..............................................................................................CACTGGGCTTTGTTTAACTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TACCTCACTGGGCTTTGTTTATCT........................................................ 24 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTCGGCTGTGTTTATCTCA...................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................TCACTGGGCTTTTTTTATCT........................................................ 20 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CAATGGGCTTTGTTTATCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAAGG................................................... 25 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATCTCAAAAA.................................................. 26 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................AGGGTCACTGGGCTTTGTTTATCTCA...................................................... 26 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTGATCTCAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGTGCTTTGTTTATCTC....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTATGT........................................................ 20 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ACTGGGCTTTGTTTATCTCATTT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
........................................................................................CAGGCTCACTGGGCTTTGTTTATCTC....................................................... 26 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................AGTTTCACTGGGCTTTGTTTATCTCA...................................................... 26 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCACTGGGCTTTGTTTAACTCAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................GATCACTGGGCTTTGTTTATCTCA...................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTCTCACTGGGCTTTGTTTATCTCA...................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................CCCTCACTGGGCTTTGTTTATCTCA...................................................... 25 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCAGTGGGCTTTGTTTATCTC....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................AGAATCACTGGGCTTTGTTTATCTCA...................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCAGTGGGCTTTGTTTATCTCAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

AGCGCAACGCCAAAACTTGAACTCTAAACTTTACACTAATTCCTAAAGTTAAATACCCTATGTGATTCAAGTCAAAACAGTCTACAGGTTCGTAGTGACCCGAAACAAATAGAGTATTCTCGCTTTAAACAAGTTGAATGCCCTGACCTGTCCGTGCTGAACTTCAGAA

***************************************(((((((..(((((((((((.((.(((((((((.......(((((....)))))))))))))).)).)))))))))))...))))))).***************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body
.......................................................CCCTATATGTTTCAAGTCAA.............................................................................................. 20 2 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:5225294-5225462 + dmo-mir-318 Known_mirbase TC-------GC-------------GTTGCGGTTTTGAACTTGA-------------------GA-----------------------------T-------TT-GA---------AATGT---------GA--TTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCAACTTACGGGACTGGACAGGCACGACTTGAAGTCTT
droVir3 scaffold_13047:1194286-1194450 + dvi-mir-318 Known_mirbase TT------CGG----------------------------------------------GGA--GC--------------AGTTTGAGAATTTTTT-------A----G--------AAGTG-------------ATTTGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCAACTTACAGGGCTGGACAAGCATGACTTAAAGTCTT
droGri2 scaffold_14906:5077256-5077431 - dgr-mir-318 Known_mirbase TT------CGT---------------C------GTGG--------CATCTCGT--------------------------TCAGTTTAGTTCGGC-------TCTGTT--------TGT-----------GA--TTTCGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCAACTTACCGGACTGGACAGGCACGACTTGAAGTCTT
droWil2 scf2_1100000004921:618-786 + dwi-mir-318-2 Known_mirbase CC-------G----------------------------------------AGT---------GCCTGAGTGA-----ATTTT---GAATCAT------------TTG--------AGTGT-------------CAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGA---GCATCACTGGGCTTTGTTTATCTCATAAAGGAGAAATGAATACAACTTACTGGGCTGGACAGGCAGGATTTGAAATCCT
dp5 2:7233331-7233485 - dps-mir-318 Known_mirbase GGGCGATTCGAGTGAGTGAATCCCTTT------CTGTGATGGTGC---------------G--------------------------------T-------GT-GAA--------ACG----TGT----GCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT--------------------------------
droPer2 scaffold_0:1094013-1094153 - dpe-mir-318 Known_mirbase TC------CC--------------TTTCCGGTTCTGTGATGGTGC---------------G--------------------------------T-------GC-GA---------AACG---TGT----GCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT--------------------------------
droAna3 scaffold_13340:867194-867352 - dan-mir-318 Known_mirbase TA---ATCCG----------------------------------------AGT---------GCC-------AAGTG--TCGAAAGCATCCTGCCTCCTGCAT-CCTCCTTCCCCAGGGT-------------CCTCCGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT-GCGA---GCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTT-------------------------------
droBip1 scf7180000394085:131898-132055 + TC-------G----------------------------------------AGT---------GCC-------CAGTG--TTGAAATCATCCTGCCTCCCGCAT-CGATCTTCCCCAGGGT-------------CCTCCGGTTTCAAATTATGGGATACACACAGTTCAGTTTTGTCACTTTT-GCGA---ACATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTTTCG----------------------------
droKik1 scf7180000302475:1425843-1425985 + GAT------------------------------CTGA--------AACCGAGT-------------------------CAAGTGTTAGTCCTAG-------AA-GGA--------CCCACCCAGT----G---CCCCCGATTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTTTTCGATCCTCATCACTGGGCTTTGTTTATCTCATAAAAGCGAAATTT----------------------------------------
droFic1 scf7180000453800:2313634-2313777 + GTG---------------------------------------------TGAATATC-TGTTTGA--------------TTTGAATTGATCCTGC-------AG-GGATG------AAGGA-------------TCCACGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTC--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------
droEle1 scf7180000490995:508422-508554 - GT------------------------------------------------------------GC--------------TTTAGAAGAATCCTGC-------ACGGAA--------AAGGA-------------CTCTCGGTTTCAATTTATGGGATACACACAGTTCAGTCTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGA--GAAATTTGTTCAACATGGGG---------------------------
droRho1 scf7180000777158:16324-16472 - TTA---------------------------------------------CGACTATC-CGAGTGC--------------TTTGGATGAATCCTGG-------AATTGA--------AGGGG-------------ACCCCGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAACATGGGG---------------------------
droBia1 scf7180000302402:8322915-8323055 + CC-------G----------------------------------------AGTGTCTTGAGTGC--------------CTTGAGTGAATCCTGC-------AG-GAA--------GGGGT-------------CCCCCGGTTTCAGTTTATGGGATACACACAGTTCAGTCGTGTCGCATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------
droTak1 scf7180000415380:1406026-1406179 - GTG---------------------------------------------CGAGTATC-CGAGTGC-------------TTTTTGGTGAATCCTGA-------AG-GAA--------AAGGTCCAGTTTAAGA--AAAAGGATTTCAGTTTATGGGATATACACAGTTCAGTCTTGTCGCCTTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------
droEug1 scf7180000409692:710196-710338 + AT---------------------------------------------------ATT-TAAGTGC--------------CTTGAATGAATTCTGT-------AAGGAA--------TACGA-------------CCCCTGGTTTCAGTTTATGGGATACACACAGCTCAGTCTTGTCACATGT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGCGG---------------------------
dm3 chr3R:6233981-6234108 + dme-mir-318 Known_mirbase GT------------------------------------------------------------GC--------------CTTGCGTGAATCCTGG-------AT-GAA--------AAGGT-------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC---------------------------------
droSim2 3r:14842737-14842864 - dsi-mir-318 Known_mirbase GT------------------------------------------------------------GC--------------CTTGCGTGAATCCTGT-------AT-GAA--------AAGGT-------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--TAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC---------------------------------
droSec2 scaffold_0:15709306-15709433 - dse-mir-318 Known_mirbase GT------------------------------------------------------------GC--------------CTTGCGTGAATCCTGT-------AT-GAA--------AAGGT-------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC---------------------------------
droYak3 3R:10262496-10262623 + dya-mir-318 Known_mirbase GT------------------------------------------------------------GC--------------CTAGCGTGTATCCTGG-------AT-GAA--------AAGGT-------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCACTA--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------
droEre2 scaffold_4770:15383891-15384037 - der-mir-318 Known_mirbase TC------CGA----------------------------------ATGCGAGTATC-CGAGTGC--------------TAGGCGTGTATCCTGG-------CT-GAA--------GAGGT-------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TC-------GC-------------GTTGCGGTTTTGAACTTGA-------------------GA-----------------------------T-------TT-GA---------AATGT---------GA--TTAAGGATTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTTGTTCAACTTACGGGACTGGACAGGCACGACTTGAAGTCTTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22190827.009082789758767886901
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................21111568.001156811351028239157
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2117938.007938793800000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................2317421.0074217397032217
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2015279.005279511603729097
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................2011004.001004100400000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................221675.0067567500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................231631.0063162500114
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191424.0042442400000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................221368.0036836201104
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201322.0032232100001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................191195.0019518801303
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................241118.0011811700001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................18196.00969400101
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................21188.00888800000
........................................................................................................................................................GGATACACTAAGTTCAGTTTTG...............................................................................................22175.00757300020
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................23175.00757300020
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................23166.00666600000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.....................................................21156.00565600000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22154.00545400000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19145.00454500000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19137.00373700000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................21131.00313100000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT....................................................22130.00302900001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................22129.00292700002
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23128.00282800000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................18124.00242400000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................22119.00191711000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA....................................................22116.00161600000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT....................................................23116.00161600000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................18113.00131300000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................21112.00121200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA....................................................24111.00111100000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................18110.00101000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT.......................................................2018.008800000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT.....................................................2018.008800000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2218.008800000
......................................................................................................................................................TGGGATACACTAAGTTCAGTTT.................................................................................................2217.007700000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................2017.007700000
.........................................................................................................................................................GATACACTAAGTTCAGTTTTG...............................................................................................2117.007700000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT.....................................................2417.007700000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.....................................................2216.006600000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATT....................................................2116.006600000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT......................................................2216.006600000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC....................................................2415.005500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................2015.005500000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCT..................................................................2515.005500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................2115.005500000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................1815.005500000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATA....................................................2314.004400000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT...................................................2514.004400000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATT.........................................................1914.004400000
...............................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA......................................................2414.004400000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT........................................................2114.004400000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCAT.....................................................1913.003300000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGC...................................................................2412.002100001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATA.........................................................1912.002200000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTGT..............................................................2912.002200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG........................................................2012.002200000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGG....................................................................2312.002200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAA...................................................2512.002200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG....................................................2412.002200000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTT................................................................2712.002200000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGG.....................................................................2212.002200000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG......................................................2112.002200000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTG...............................................................2812.002200000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGA...................................................................2412.002200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT....................................................2412.002100001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAA..........................................................1811.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.......................................................2111.001000001
.......................................................................................................................................................GGGATACACTAAGTTCAGTTTT................................................................................................2211.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTTT..................................................2611.001100000
.......................................................................................................................................................GGGATACACTAAGTTCAGTTTG................................................................................................2211.001100000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.....................................................2211.001100000
........................................................................................................................................................GGATACACTAAGTTCAGTTTT................................................................................................2111.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAGG...................................................2511.001100000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT...................................................2311.001100000
droVir3
TT------CGG----------------------------------------------GGA--GC--------------AGTTTGAGAATTTTTT-------A----G--------AAGTG-------------ATTTGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAATTTGTTCAACTTACAGGGCTGGACAAGCATGACTTAAAGTCTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................2212224776.0022247764350252493034295106439225671166216965213291212406698768592811329646661334602011105712315035993511671447951841021198658841505000000000000001106060493111356152904954219171631324630834818538120994626845528238320287318619676
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................211882154.0088215441485580902578109619975116671311608313662211254675143319605865868821867629931316972714329720840100000000000000114830017283122834989913158519163228980849975613829613716810257271840906
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................23135988.0035988068870405113610320310200204025612351157710962946341856153832536586000000000000000001300002210252191113433040812459270835503622118233834
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................20129926.0029926422265406293416356111808662183010111452411659240830473274193171481479185361046541000000000000000000230111344263113144461573461937863054103930216208
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2116544.006544004789030225013011000000000100269163188158200002001046000000000000000000000006132100017824213117415117900001
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................2015837.00583700263026672911960840030201146012464402805667803001010101247290000000000000000010000010926400024935620926024930300000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................2315394.0053940117501170145026011000120001111150334238579539300113102236000000000000000000010002017532842141444625528636140833163
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................1913952.00395211314001805254054025012000001100233112107150811100060031283200000000000000000330020159751004105073042224352540021214
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................2212434.002434215041694871120970000002075004173614302600100400006207000000000000000002000006901033342527583601003
........................................................................................................................................................GGATACACCAAGTTCAGTTTTG...............................................................................................2212114.002114001020140150000000000000000227231471150000000000500000000000000000000000015522400031429611017622216700000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................2212011.002011129006621281500320000002023105210166106801000010011252000000000000000000300000479400016311511810317513301279
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................2211725.0017250131905427002401400000000020037541251540001000000108100000000000000000100000167700022920614311716425101112
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................1911335.001335002401702406407400000000100024402737510000040000500000000000000000001001000280001452129312613016200000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................2011117.0011170052804060506000000000000241415100000000000700000000000000000000000002000931106567869100020
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................241956.0095600120110401010000001000001233225373100000000042100000000000000000000009183900010312989871169800010
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT....................................................221710.0071000304190100000000000000617444390000000000141000000000000000000000001730000988468691119000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................191705.0070500480401720200000000000200353215715100000000004600000000000000000000000082800053622941303800001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................181437.004370028080260203000000000100347826603200000330105300000000000000000000000093800056828200001
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................181332.003320032011040040001000000010013241023190000000000320000000000000000000000010370001835106132000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................231325.0032500170311400010000001001006181437600000000000160000000000000000000000007110002922919162200001
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191251.00251002270001000000000000000013461000000000050000000000000000000000000100000011000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.....................................................211216.002160090516200000000000000031613375600000000008000000000000000000000000113800023121200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................211212.002120123080601601100000000000029511500000010002400000000000000000000000008000131713816900114
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................221171.0017100930200000000000000000016110110000000000200000000000000000000000047000453471100000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................231170.00170007600020000000000000000141230000000000000000000000000000000000605400006212001000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................181151.001510011050100110900000000010013141614120000000000280000000000000000000000001500010000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA....................................................221148.001480000302000000000000000023322180000000000200000000000000000000000011230001011610111000100
....................................................................................................................................................TATGGGATACACCAAGTTCAGT...................................................................................................221140.00140003030130170100000000000086414230000000000200000000000000000000000055000312462900000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC....................................................241133.00133001040400000000000000002323110000010000400000000000000000000000370200081747111200000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................181129.0012900400060705000000000000111330000000000200000000000000000000000300100072011471600000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................211127.00127005030208090000000000003223000000000004000000000000000000000001200000141188131401131
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGC...................................................................241105.00105001000000000000000000000010200000000001000000000000000000000002010008151712182700000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23167.006700170100000000000000000014083000000000020000000000000000000000002400055044700000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCT..................................................................25153.005300401020100000000000000016158000000000010000000000000000000000002000013101600000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTT................................................................27152.005200801020100000000000000142116000000000030000000000000000001000001000011800100000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................22151.005100400000100000000000000100000000000000000000000000000000000000260000053425000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................20149.00490012000001000000000000002113300000000001400000000000000000000000120000000000000000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTT.................................................................26144.004400500010200000000000000022104000000000010000000000000000003000000000013313300000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA....................................................24142.00420000001000000000000000014268000000000000000000000000000000000000200084032100000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATA....................................................21140.00400000200010100000000000001146000000000010000000000000000000000001000025542400000
......................................................................................................................................................................................................GGGCTTTGTTTATCTCA......................................................17139.0039000000000000000000000000000000000000000000000000000000000000000102900000000000000
.......................................................................................................................................................GGGATACACCAAGTTCAGTTTTG...............................................................................................23139.00390000000000000000000000000012000000000000000000000000000000000000000038759400000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATT....................................................21136.00360000002010000000000000021062000000000020000000000000000000000000300024434000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTC.......................................................17135.003500000000000000000000000000000000000000000000000000000000000000350000000000000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCATAAG..................................................22133.00330010000010100000000000025188000000000000000000000000000000000000200000011200000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTG...............................................................28132.00320050100000000000000000014271000000000010000000000000000000000014000004000100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................21130.00300030000020200000000000001010000000000000000000000000000000000000000046312300200
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGG.....................................................................22130.003000601000000000000000000002220000000000000000000000000000000000051200000000000000
......................................................................................................................................................TGGGATACACCAAGTTCAGTTT.................................................................................................22129.002900300000000000000000000011109000000000000000000000000000000000001400000000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................20128.00280100202010000000000000055121000000000030000000000000000000000000100013000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCC......................................................20124.00240000705000200000000000080000000000000020000000000000000000000000000000000000000
........................................................................................................................................................GGATACACCAAGTTCAGTTTTGTCAGATG........................................................................................29123.002300000000000000000000000000000000000000000000000000000000000000000000710211200000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22122.002200190000000000000000000000011000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT.....................................................20122.00220020000000000000000000012012000000000000000000000000000000000000100014122300000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAG....................................................24121.00210000000000000000000000010000000000000000000000000000000000000000000043321700000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT....................................................24120.00200020000000000000000000000133000000000030000000000000000000000001000030003100000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................21120.00200010001000000000000000001254000000000030000000000000000000000000200010000000000
........................................................................................................................................................GGATACACCAAGTTCAGTTTT................................................................................................21117.00170020001000000000000000000042000000000000000000000000000000000002600000000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................21117.001700160000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATC....................................................23116.001600000000000000000000000000000000000000000000000000000000000000160000000000000000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGG....................................................................23116.00160030100000000000000000003113000000000000000000000000000000000003000000001000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCCA.....................................................23116.00160000304000000000000000030010000000000050000000000000000000000000000000000000000
.........................................................................................................................................................GATACACCAAGTTCAGTTTTG...............................................................................................21115.00150020000000000000000000001010000000000000000000000000000000000000100010313200000
............................................................................................................................................................ACACCAAGTTCAGTTTTG...............................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000014005500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTA...........................................................17115.00150000000000000000000000000000000000000000000000000000000000000071700000000000000
..........................................................................................................................................................ATACACCAAGTTCAGTTTTG...............................................................................................20114.00140000001000000000000000001011000000000000000000000000000000000007000001020000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATA.........................................................19114.00140040001000000000000000021112000000000020000000000000000000000000000000000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT...................................................25113.00130000200000000000000000000331000000000000000000000000000000000004000000000000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCT........................................................17112.001200000000000000000000000000000000000000000000000000000000000000111000000000000000
...............................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA......................................................24112.00120040000000000000000000001021000000000000000000000000000000000002100000000100000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATTT...................................................23112.00120000000000000000000000000041000000000000000000000000000000000003200000002000000
..............................................................................................................................................................................TCAGATGT-CCAA---GCATCACTGGGCTTTGT..............................................................29111.00110000100000000000000000000002000000000000000000000000000000000051200000000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG....................................................24111.00110000000000000000000000000000000000000000000000000000000000000010100002111400000
.......................................................................................................................................................................................................GGCTTTGTTTATCTCAT.....................................................17111.00110000000000000000000000000000000000000000000000000000000000000003800000000000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCAT.....................................................19111.00110010001000000000000000002121000000000000000000000000000000000001000010000100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATT.........................................................19111.00110040100000000000000000010011000000000030000000000000000000000000000000000000000
.....................................................................................................................................................ATGGGATACACCAAGTTCAGTT..................................................................................................22110.00100000000010000000000000010122000000000000000000000000000000000000000000030000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................18110.00100090000000000000000000000000000000000000000000000000000000000000000000000100000
droGri2
TT------CGT---------------C------GTGG--------CATCTCGT--------------------------TCAGTTTAGTTCGGC-------TCTGTT--------TGT-----------GA--TTTCGGATTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGT-CCAA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTAGTTCAACTTACCGGACTGGACAGGCACGACTTGAAGTCTTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22174.0074722
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................21113.0013130
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2018.00880
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................2315.00550
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................2213.00321
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................2012.00220
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2112.00220
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................2011.00110
droWil2
CC-------G----------------------------------------AGT---------GCCTGAGTGA-----ATTTT---GAATCAT------------TTG--------AGTGT-------------CAGACGGTTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCGCATTCCACGA---GCATCACTGGGCTTTGTTTATCTCATAAAGGAGAAATGAATACAACTTACTGGGCTGGACAGGCAGGATTTGAAATCCTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22234649.50692996855621961804721
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................2124661.0093222201706936214
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2122730.00546025458000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................202872.0017441817091304
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................232710.001420991321000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................202313.006260626000
........................................................................................................................................................GGATACACCAAGTTCAGTTTTG...............................................................................................222174.503490349000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................202146.502935285201
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................232110.002208211010
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................19265.501310131000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................22261.501230123000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................22253.501073104000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................22250.501017427000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19236.0072072000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................23234.5069564000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................19233.5067859000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................18223.0046046000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19221.5043340000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................23217.5035035000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................24216.0032329000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23215.5031031000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................2228.0016016000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................2228.0016214000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................2127.0014014000
.........................................................................................................................................................GATACACCAAGTTCAGTTTTG...............................................................................................2126.5013013000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................1825.5011011000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................1825.0010010000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATT....................................................2224.50926010
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................2124.50909000
.......................................................................................................................................................GGGATACACCAAGTTCAGTTTTG...............................................................................................2324.00808000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................1823.00606000
.....................................................................................................................................CAGACGGTTTCAATTTATG.....................................................................................................................1923.00606000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................1823.00606000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG......................................................2122.00404000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.....................................................2122.00404000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................2122.00404000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.......................................................2122.00404000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA....................................................2421.50303000
........................................................................................................................................................GGATACACCAAGTTCAGTTTT................................................................................................2121.50303000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2221.50303000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATT....................................................2121.50303000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT....................................................2321.00202000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................2021.00202000
.......................................................................................................................T-------------CAGACGGTTTCAATTTATG.....................................................................................................................2011.00101000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT.....................................................2021.00202000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAT.....................................................2421.00202000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.....................................................2221.00202000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................2121.00202000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT........................................................2121.00202000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT......................................................2221.00202000
.........................................................................................................................................................GATACACCAAGTTCAGTTTT................................................................................................2021.00202000
......................................................................................................................GT-------------CAGACGGTTTCAATTTATG.....................................................................................................................2111.00101000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................2020.50101000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACC....................................................2420.50110000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACT....................................................2420.50110000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG....................................................2420.50101000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCA........................................................1920.50101000
...........................................................................................................................................................TACACCAAGTTCAGTTTTGTCG............................................................................................2220.50101000
..............................................................................................................................................................................TCGCATTCCACGA---GCATCACTGGGCTT.................................................................2720.50101000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATTT...................................................2520.50101000
........................................................................................................................................................................................CGA---GCATCACTGGGCTTTGTTTATCTCA......................................................2820.50101000
.......................................................................................................................................................GGGATACACCAAGTTCAGTTTT................................................................................................2220.50101000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATG.........................................................1920.50101000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.....................................................2220.50101000
........................................................................................................................................................GGATACACCAAGTTCAGTTG.................................................................................................2020.50101000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG....................................................2420.50101000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA.....................................................2320.50101000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGC....................................................2420.50101000
dp5
GGGCGATTCGAGTGAGTGAATCCCTTT------CTGTGATGGTGC---------------G--------------------------------T-------GT-GAA--------ACG----TGT----GCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT--------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22164749.006474917422703010126722335341
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................21112335.001233515102080214162076112
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2015099.0050992487000021720440
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2113906.00390603867000103800
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................201999.00999099700000200
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................231496.0049603030000019300
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................221482.004822458000002200
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191405.00405040500000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201273.002730183001018800
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................231273.002730183000009000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................191173.001730132000004100
........................................................................................................................................................GGATGCACCAAGTTCAGTTTTG...............................................................................................221145.00145014200000300
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................21176.007607300000300
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19150.005004400000600
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................23147.0047036000001100
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................21146.004604600000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19143.004303700000600
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................18139.0039025000001400
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................24126.002602200000400
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................22126.002602600000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................18126.002602400000200
.................................................................................................................................................................................................TCACTGGGCTTTGTTT............................................................16125.002500000002500
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23124.002402400000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................22121.002101900000200
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................18119.001901900000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22113.001301300000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT.......................................................20111.001101100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................21110.00100800000200
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................23110.00100600000400
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................18110.001001000000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................1819.0090900000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2219.0090300000420
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................2218.0080600000110
.........................................................................................................................................................GATGCACCAAGTTCAGTTTTG...............................................................................................2118.0080800000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT........................................................2117.0070700000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAG....................................................2416.0060000000600
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT......................................................2215.0050500000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGAG....................................................2415.0050000000500
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................2014.0040400000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTAG....................................................2414.0040000000400
...............................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA......................................................2414.0040200000200
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT....................................................2413.0030000000300
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................2013.0030300000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................2113.0030200000100
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTA.....................................................2313.0030200000100
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATC....................................................2213.0030000000300
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA....................................................2413.0030000000300
.................................................................................................................................................................................................TCACTGGGCTTTGTTTA...........................................................1713.0030000000300
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCAA.....................................................2412.0020000000200
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.....................................................2112.0020200000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG....................................................2412.0020000000200
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCG......................................................2012.0020200000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG......................................................2112.0020200000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.....................................................2212.0020200000000
..............................................................................................................................................................................TCACATTT--CGA---GCATCACTGGGCTT.................................................................2512.0020000000200
..............................................................................................................................................................................TCACATTT--CGA---GCATCACTGGGCTTTG...............................................................2712.0020000000200
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATA.........................................................1912.0020200000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAACC.................................................2712.0020000000200
........................................................................................................................................................GGATGCACCAAGTTCAGTTTT................................................................................................2112.0020200000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG....................................................2412.0020000000200
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATT.........................................................1921.5030200000100
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCT......................................................2011.0010100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAA...................................................2511.0010000000100
....................................................................................................................................TCTTTTGGTTTCAATTTATG.....................................................................................................................2011.0010100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAGG...................................................2511.0010100000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.....................................................2211.0010100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTT.............................................................1511.0010000000100
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTA.......................................................2011.0010100000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT.....................................................2011.0010100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATGTT..................................................2611.0010000000100
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC......................................................2111.0010100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATAATT.................................................2711.0010000000100
...............................................................................................................................................................................................CATCACTGGGCTTTGTTTATCT........................................................2211.0010000000100
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATAGCG.................................................2511.0010000000100
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATAA........................................................2011.0010100000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCAA.....................................................1911.0010100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTC.....................................................2311.0010100000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCTGT....................................................2411.0010000000100
droPer2
TC------CC--------------TTTCCGGTTCTGTGATGGTGC---------------G--------------------------------T-------GC-GA---------AACG---TGT----GCCTCTTTTGGTTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACATTT--CGA---GCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAATTGATTCAACT--------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22137016.00370163936942014156
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................2115167.0051671251340588
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2113242.003242032420000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2011409.001409013940645
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................201434.0043404340000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................231357.0035703570000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201155.0015501550000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................231129.0012901280100
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................221119.0011901190000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191113.0011301130000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................22182.00820820000
........................................................................................................................................................GGATGCACCAAGTTCAGTTTTG...............................................................................................22160.00600600000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................19141.00410410000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................22132.00320320000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19122.00220220000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................22118.00180180000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................23117.00170170000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................21116.00160160000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19116.00160160000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23114.00140140000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22111.00110110000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................21110.00100100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................2318.008080000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................1818.008080000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................2417.007070000
.........................................................................................................................................................GATGCACCAAGTTCAGTTTTG...............................................................................................2115.005050000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................2114.004040000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................1814.004040000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................1814.004040000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................2014.004040000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................1814.004040000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2213.003030000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC......................................................2112.002020000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA.....................................................2312.002020000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.....................................................2112.002020000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT....................................................2411.001010000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCT......................................................1911.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGG....................................................2411.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA....................................................2411.001010000
...........................................................................................................................................................TGCACCAAGTTCAGTTTTG...............................................................................................1911.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT......................................................2211.001010000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.....................................................2211.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................2011.001010000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................1811.001010000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT....................................................2311.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGT....................................................2411.001010000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................2111.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGC.....................................................2311.001010000
droAna3
TA---ATCCG----------------------------------------AGT---------GCC-------AAGTG--TCGAAAGCATCCTGCCTCCTGCAT-CCTCCTTCCCCAGGGT-------------CCTCCGGTTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTTTT-GCGA---GCATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTT-------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22123669.00236692364932348
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................2115922.005922591500124
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2013654.003654364610034
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2111938.001938193800000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................231886.0088688600000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................201508.0050850800000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191295.0029529500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................221197.0019719700000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................191138.0013813700001
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201116.0011611600000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................22187.00878700000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................23186.00868600000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................22172.00727200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................23129.00292900000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19125.00252500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................18125.00252500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................24125.00252500000
........................................................................................................................................................GGATACACACGGTTCAGTTGTG...............................................................................................22124.00242400000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19124.00242400000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................21222.00444400000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................18120.00202000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23116.00161600000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................21115.00151500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................22114.00141400000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................18113.00131300000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................18113.00131300000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................2319.009900000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................2216.006600000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT....................................................2315.005500000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................1815.005500000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2215.005500000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................2114.004310000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................2114.004400000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC......................................................2114.004400000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG......................................................2114.004400000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................2013.003300000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC....................................................2413.003300000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAT.....................................................2013.003300000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT......................................................2232.678800000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................2012.002200000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.....................................................2112.002200000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATT.........................................................1931.675500000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT.......................................................2021.503300000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCT......................................................2011.001100000
.........................................................................................................................................................GATACACACGGTTCAGTTGTG...............................................................................................2111.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATG....................................................2411.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.......................................................2111.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCGA.....................................................2311.001100000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.....................................................2211.001100000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCA........................................................1911.001100000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................2111.001100000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.....................................................2211.001100000
.........................................................................................................................................................GATACACACGGTTCAGTTGTGT..............................................................................................2211.001100000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAAG....................................................2311.001100000
........................................................................................................................................................GGATACACACGGTTCAGTTGT................................................................................................2111.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAT....................................................2411.001100000
..............................................................................................................................................................................TCACTTTT-GCGA---GCATCACTGGGCTTTG...............................................................2811.001100000
....................................................................................................................................................TGTGGGATACACACGGTTCAGT...................................................................................................2211.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA....................................................2411.001100000
........................................................................................................................................................GGATACACACGGTTCAGTTGTGG..............................................................................................2311.001100000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAG.....................................................2111.001100000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCAT.....................................................1911.001100000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTG.......................................................1911.001100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG........................................................2011.001100000
droBip1
TC-------G----------------------------------------AGT---------GCC-------CAGTG--TTGAAATCATCCTGCCTCCCGCAT-CGATCTTCCCCAGGGT-------------CCTCCGGTTTCAAATTATGGGATACACACAGTTCAGTTTTGTCACTTTT-GCGA---ACATCACTGGGCTTTGTTTATCTCATAAGACTGAAATTTGTTCAACTTTCG----------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GAT------------------------------CTGA--------AACCGAGT-------------------------CAAGTGTTAGTCCTAG-------AA-GGA--------CCCACCCAGT----G---CCCCCGATTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTTTTCGATCCTCATCACTGGGCTTTGTTTATCTCATAAAAGCGAAATTT----------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTG---------------------------------------------TGAATATC-TGTTTGA--------------TTTGAATTGATCCTGC-------AG-GGATG------AAGGA-------------TCCACGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTC--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GT------------------------------------------------------------GC--------------TTTAGAAGAATCCTGC-------ACGGAA--------AAGGA-------------CTCTCGGTTTCAATTTATGGGATACACACAGTTCAGTCTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGA--GAAATTTGTTCAACATGGGG---------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTA---------------------------------------------CGACTATC-CGAGTGC--------------TTTGGATGAATCCTGG-------AATTGA--------AGGGG-------------ACCCCGGTTTCAATTTATGGGATACACACAGTTCAGTTTTGTCACATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAACATGGGG---------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CC-------G----------------------------------------AGTGTCTTGAGTGC--------------CTTGAGTGAATCCTGC-------AG-GAA--------GGGGT-------------CCCCCGGTTTCAGTTTATGGGATACACACAGTTCAGTCGTGTCGCATTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTG---------------------------------------------CGAGTATC-CGAGTGC-------------TTTTTGGTGAATCCTGA-------AG-GAA--------AAGGTCCAGTTTAAGA--AAAAGGATTTCAGTTTATGGGATATACACAGTTCAGTCTTGTCGCCTTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AT---------------------------------------------------ATT-TAAGTGC--------------CTTGAATGAATTCTGT-------AAGGAA--------TACGA-------------CCCCTGGTTTCAGTTTATGGGATACACACAGCTCAGTCTTGTCACATGT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAACAGGCGG---------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GT------------------------------------------------------------GC--------------CTTGCGTGAATCCTGG-------AT-GAA--------AAGGT-------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC---------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22118436845.00184368452805412364000000010000001558244380644187525935800036000468372354648042241074070445877848122848394417721294799595141192108406125194729231706972651300072472000000000000000001521811151375205014837211413023131908164101532410777979285231618346246092000509012155358413146073640336191675661541115371264142717012733118409362161124162327564379109349168599325004950461420192557321323861421083001357030911306422829616924221687511242811328764768376209467336920331623601211631922782361732791173205418297101851678351613376028129667397713625309612923156609667078107521685747428331350051482008503512223158210129753283172356441116466552134223889959510011984992049335097561242743230767911221802592469451224122117151113271019851187332560757645931377158424310930432123292183478383515576145117201186163914524193646248130654408451773724127105291702107132
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................2112351916.002351916000004800010000000000156346871492521890000000044032513628023983672449076144166421691039671392849667114426708108011603120010102000000000000000007999987500001041510331002387110002216232242974080023602160000010002022211741634303312031897664521955126022244281700686151320844277241397719543349151029202201316141539808010001120101142106638673462115766281301033912601082439455493274601580498821175134134621834157135964181613813352240828813116578010749754778236397115001613100000235224104313255913811943912860121636101121250462636713294585561173937334977837122026991731112421084640039619120795372693862073715164953592117553765723284844728215389919101132761136131417331861252206893722
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................201687247.0068724700001140001000000000030415878702515000000004125695318477998122630497631091932197174191225252958235719443490003900000000000000000043544537000000081021021531100007123640571160002110101000000002861912198157659142632473502246400740622799203835323683478660718250000047572292992400004000020500112923611071199995108613600211321675810312741012181651055250636022195310722522510876857859693277106841522210821136701300290000000543320010319100740750502210031401602148670983741328132987704311303241685838125154107419438001144378461280238673158687043216441413928248084242711191581230616176736232029139083764463637
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201266139.002661390000000000000000000027680213031200000000840431879321735241106134203528280334523932438153681435297050000000000000000000000034130000000000000007000000000000050010000100000000000010012251912460110214233573093960200656291245523344212148600000307104100200000000000150120057377143355702724026700000521280231000004974297472163448761634536812614122900000000000028200101000300000000000000000000105866334831772941489026099274044765882000000110016013131575101840697500000028316135719200100000000007030834147000300
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................22187483.0087483000002000000000000006568403802000000007711410074122280625992622155111599820769551461790000000000000000000000010100000000000000001500000000010005000000010000000010010020354117762002225842944321491138269375990526000000000110200000000000000000002122430221070131010018670200010004732731421571527070348318000020000001110000000125000000100000000000000132110011298135627672083215821114910000000000020289665629655105330000169414219700000000000000922306001000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................23178291.00782910000010000000010000040162200050000000020872218118182418928328953634623362322141612148000000000000000000000000101000000000000010560000000112000100000000000000000000021020194113001055926272184031231237649388829800000100011010010000000000013003047220171402449349014050012246172326250303168201525219814962381011366512822651500000011660000010900000001160000001000001000100003074647411973147626711474398492811000000000000001155200397519520000015358651582000000100100008316213043020843
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................22154509.005450900000100000000000000135430020200000000179291287286111638266058425396708210114467150000000000000000000000001102100000120001000220000001000000300000001000000000000011834267032028108373268292160104224751026446000000000100001000000000040080031341265100302710001357201010020049211388916314357690331752610000030000002450100000124000000103000000000000156656864071326291212044138353873000000000005032746694719791000029011188500000000000000007373511000521
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................19143121.004312100000000000000000000136280500040000000099688153512142314981021011714815398842900000000000000000000000768700000000000000035000000000010070000000000000000000106755970605140232013812720121514929623419512526991623481160000020220000000000000000000031209217349120010067823118377040921002013242033579493734801711083804823550000095100000330000000250001000000010000100001677306560514472348414095218421211021020000114628047936565700001225058612131000000012010091233749712119111
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................21140415.0040415000000000000000000001166201020000000051204594117496301331212110912345198290001000000000000000000001010000000000000003210000010000001000000000000000000001000445142126110100122259771813782332434631260000000000000020000000000000100325002240002028000011822001200100773210117460242909891501034543000000000005900000000500000000000000000000012336532326134715821029113316691100000000000100329921212622000000367322549000000101000001633237000005
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19134420.00344200000000000000000000036801000400000000985114936761129151620241301632281346523345000000000000000000000000111000000000000000100000000000000000000000000000000000013102100203558322126206781333424942619200000000040000000000000000000101040230110010034000007140001000001665610596116176284643486232860000000000012000000012000000000000000000000126873583001484129186445963734000000000000101974432568160010003023165510000001000000141098416000100
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................18110293.0010293000000000000000000005321000100000000132141614138630455440602918379000000000000000000000000401000000000000000000000000000000000000000000000000000120000000201024836642351533395110000020010000000000000000000010001609100000900000040000000001312510564397921721011020000000000030000000000000001000000000000004532263121512465324610775800000011000000019905419300000075224000000000000000219147000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19110063.00100630000000000000000000020127000000000000083815024222043358433996970000000000000000000000001000000000000000003000000000000010000000000000000000000030002001000222416812042756659636000000000000000000000000000000001571120000104700013962000000003224637293371261800000000000200000000100000000000000000000059931807434827317892151448000000000000200511553476000001468398000000000000000340000009
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................2319837.00983700000100000000000000844000010000000016810818040816249442456441511300024100000000000000000000132000000000000000200000000000000700000000000000000000000330270000021812043742804170162590000000000000010000000000000000113636200130152010025240001000004970010571791517753431011581059000136100000140000000010000000010000000000001714405516828867536280421001000000000012220610821000000028891330000000000000041474000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................2228879.001775800000500000000000000133100000000000001115162390237321411668110421879108000000000000000000000000001000000000000000320000000000000900000000000000000100021181418340000010973364381778425459000000100000000000000000001000013661112000201700000394200001000079442212391410134251482080000000000063000000001000000000000000000000086716453014981771329413262465201000000000101348523402631000000179348529000000100000002147564000500
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................2015523.00552300000000000000000000280000000000000743130615020261411812300000000000000000000000011000000000000000050000000000000100000000000000000000012001351000005245197130193311000000000000000000000000000000000202100000400000130000000001101285294112874997530000000000010000000020000000000000000000003331388692622321512805150000000000000001855267900000029556500000000000000013143000100
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................1815045.005045000000000000000000002710800100000000005440403090271242330511000000000000000000000000000000000000000000010000000000000100000000000000000000000100014000000101183345122149278000000000000000000000000000000000272110000001811034090000000001732280305051000000000002000000000000000000000000000000231178428158117825107862000000000000000305414230000002129260000000000000001200000010
........................................................................................................................................................GGATACACACAGTTCAGTTTTG...............................................................................................2214844.004844000004000000000000001110000000000040458480284231142117312132110004327400000000000000000000000000000100000011410000005240002400000000000000000000000000000000001392446241043471938000002030000000000000001000000000402243000002000006700000000011461281343157324728000000000009800000000100000000000000000000022115181333420841211000000000000303207103667303000000227305243100000000000003271000705
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................1814190.004190000000000000000000001857000000000000019252111102104951711823117197000000000000000000000002425000000100000000130000000000001300000000000000001102584577641000012880020035514230333517261400000000100000000000000000001030102402230000023100106500100010252911522191492141612000100000006000000001000000000000020000000841742863961691062273000020100001029375132420000003710024100100000000000554200010113
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................2114119.004119000001000000000000000710000000000003053130105321028494539420000000000000000000000000000000000000000004000000000000000000000000000000000006801101000000636102330152429900000000000000000000000000000100016111100000400000240000000003011274292321513042000000000000000000000000000000000000000000770446166102726486236961010000000000025714852100000010204000000000000000134972000100
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................2313996.003996000000000000000000001140000000000000135741202032133005737281740800000000000000000000000000000000000000000011000000000000010100100000000000000002003028000000855121920222558250000000002000000000000000000000001007300030000001360000000002130021026301110766183139000024100000110000000000000000000000000000005443329871327331465030000000000001005784811030000001629500000000000000001141000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATC....................................................2412658.0026580000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000422221230000259635000000000000000000000000000000000000000001000000000000000001001000000000000000000000000200000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................2112332.002332000002000000000000002500002000000001124100151618111813239810000000000000000000000000010000000000010001000000000000000000000000000000000002410120000100813181680412112000000000000100000000000000000000101100000400000780001000007020625713655896171000010000001500000001000000000000000000000018522748642613468411300000000000000114194623000001112743000000000000001752000100
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA....................................................2412058.0020580000000000000000000013000000000000085335020001211289013800000000000000000000000000000000000000000000000000000000000000000000000000000000030030000000436126111350000000000000000000000000000000004000000200000013100000000070105687584749363520000000000010000000000000000000000000000005712220901502923612100000000000000018281641000000111545000100100000006430000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................2311905.001905000003000000000000002000000000000001141201030917350222000000000000000000000000000000000000000000190000000000000400000000000000000000000002200010011261821305200000000000000000000000000000000000200000020000003000000100000060713959135135000000000000000000000000000000000000000000362481467654693123500000000000000022491130000001624641000000000000001500000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................1911686.0016860000000000000000000002000020000000003310011000033513200000000000000000000000000100000000000000000000000000000000000000000000000000123000000000101105930242400000000000000000000000000000000010000000000000000000000000200016892102199000000000000000000000000000000000000000000101462168090572138400000000000000131481600000031730000000000000001332000002
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................2111274.001274000000000000000000000000000000000000000100012010015520000000000000000000000000000000000000000000000000000000000100000000000000000000011000110000001012101542000000000000000000000000000000000001000000000000000000000000011210113030000000000010000000010000000000000000000002561525330243157125811000000000000043173035000000055000000000000000120000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................2111170.001170000000000000000000001400000000000004134402040201861014400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000626401312176000000000000000000000000000000000301000000000000020000000000000125111033221100000000000000000000000000000000000000000037167174837305271900000000000000007289220000002319000000000000000120000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCC......................................................2011117.001117000000000000000000000000000000000004261706115020227901433220000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001061424020141915000000000000000000000000000000000101000000100000000000000000000600020540000000000010000000000000000000000000000001414823124129317910000000000000013812125140000000215000000000000000030000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................201986.00986000000000000000000000000000000000001221101030104001220000000000000000000000000000000000000000000000000000000000000000000000000000001012000000010001505101220000000010000000000000000000000000302000000200000110000000003000523167116000000000001000000002000000000000000000000114197245797160274300000000000000213111923000000414410000000000000041042000200
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................201830.008300000010000000000000001000010000000020012022003011024000000000000000000000000000000000000000000000000000000000000000000000000000000066200000000003924512231000000000000000000000000000051000001000000100000010000000000000201077151922190000000000000000000000000000001000000000005299124511320672600000000000000045940000002832000000000000002302000100
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTAC......................................................221823.0082300000000000000000000430000000000000001200800020038282700000000000000000000000000000000000000000000000000000000000000000000000000000000012021000000011246103101130000000000000000000000000000100002010000101000000100000000010000000110100001000000100000000000000000000000000000072671318435351820000000000000009271337000000101000000000000000000000000
droSim2
GT------------------------------------------------------------GC--------------CTTGCGTGAATCCTGT-------AT-GAA--------AAGGT-------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--TAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC---------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................2213942541.00394254112933879676171220272141824486803814447127461250000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................211491858.00491858145433022761225110422771746585978912000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................201173103.0017310314241252209027677817962535501640000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................23118327.00183270026000887889076715396020000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................19110629.0010629530445138133209513539040000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................2013716.003716000550011951126611333000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................1912648.002648000700145389002107000000
........................................................................................................................................................................................................GCTTTGTTTATCTCA......................................................1512131.002131000000108876370273000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2111992.001992000862005304975197000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................2211814.00181400038009127802080110000
......................................................................................................................................................................................................GGGCTTTGTTTATCTCA......................................................1711757.00175700000022001753000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................1811718.001718000132175960230338000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................1811285.0012850004008282101116000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................231800.008000002003953652035010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTA...........................................................171708.0070800000012210710478000000
.......................................................................................................................................................................................................GGCTTTGTTTATCTCA......................................................161682.00682000000825910540000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................191541.00541000120021515200161010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................221468.004680003002281982235000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................211393.003930001600188186003000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTT............................................................162376.50753000000716000622000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA....................................................241372.003720000001881654015000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................201362.003621001950065810019010000
........................................................................................................................................................GGATACACACAGTTCAGTTTTG...............................................................................................221340.0034000015001481030070040000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................222309.0061860210026619001152000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................231301.0030100010001351092045000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................211282.002820003001511120016000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................211276.0027600010001141420010000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTC.......................................................171263.00263000000403801183010000
......................................................................................................................................................................................................GGGCTTTGTTTATCTC.......................................................161250.002500000000000250000000
.................................................................................................................................................................................................TCACTGGGCTTTGTT.............................................................153216.33649000000674900533000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................181210.0021000020090510067000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................181188.00188000100194700121000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................231156.0015600030070601022000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191150.0015000080002741002000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCT........................................................16193.009300000022190052000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................20191.00910004003945003000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATC.........................................................17163.0063000000120060000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCT........................................................17158.00580000001110046000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................20151.005100000017161017000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................22146.004600020018140012000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATC.........................................................16142.0042000000940029000000
......................................................................................................................................................................................................GGGCTTTGTTTATCT........................................................15332.6798000000100097000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.......................................................21227.00540001002622005000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATC.........................................................15126.0026000000760013000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................24126.0026000000188000000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT........................................................21119.0019000100107001000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCATA....................................................21118.001800000098001000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23117.001700020027006000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATA....................................................24116.001600000087001000000
...............................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA......................................................24115.001500000094002000000
............................................................................................................................................................ACACACAGTTCAGTTTTG...............................................................................................18115.0015000000000015000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22115.001500040083000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................21115.001500010057002000000
.......................................................................................................................................................................................................GGCTTTGTTTATCTC.......................................................15213.5027000000210024000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCAA.....................................................20112.001200010016004000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCAA.....................................................19112.0012000000010011000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................18111.001100040011005000000
........................................................................................................................................................GGATACACACAGTTCAGTTTT................................................................................................21111.001100000023006000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATA....................................................22110.001000000045001000000
......................................................................................................................................................TGGGATACACACAGTTCAGTT..................................................................................................21110.001000000003007000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTAT..........................................................16110.001000000011008000000
......................................................................................................................................................TGGGATACACACAGTTCAGTTT.................................................................................................22110.001000000040005010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATA.........................................................19110.001000000013006000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCATC....................................................2219.00900000000009000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG........................................................2019.00900010022004000000
droSec2
GT------------------------------------------------------------GC--------------CTTGCGTGAATCCTGT-------AT-GAA--------AAGGT-------------CCTTCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTATTCAAC---------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................221292381.00292381286636108474654
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................21129473.0029473288141510508
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................21123562.002356223554206
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2014362.0043624201380123
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................2012430.0024302430000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201987.009879554028
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................231761.007617385018
........................................................................................................................................................GGATACACACAGTTCAGTTTTG...............................................................................................221418.00418417001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................231321.00321320001
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191304.00304303001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................191216.00216214101
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................231168.00168167001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................222135.50271267004
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................231127.00127127000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................211111.00111111000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG......................................................211106.00106106000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................231102.00102102000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................191102.00102102000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................22199.009996003
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19199.009996102
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22168.006867001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................22164.006461102
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................18157.005757000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................21139.003939000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................22130.003030000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................18125.002524001
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................18119.001919000
.........................................................................................................................................................GATACACACAGTTCAGTTTTG...............................................................................................21116.001616000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA....................................................24115.001514001
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................18113.001313000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................18111.001111000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.....................................................22110.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.......................................................21110.001010000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG........................................................2019.0099000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................2019.0099000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2219.0099000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.....................................................2218.0088000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC......................................................2118.0088000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................2127.001414000
........................................................................................................................................................GGATACACACAGTTCAGTTTT................................................................................................2116.0066000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................2115.0055000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................2415.0055000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGA....................................................2414.0044000
......................................................................................................................................................TGGGATACACACAGTTCAGTTT.................................................................................................2214.0043001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................2014.0044000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTA.......................................................2013.0033000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATT.........................................................1923.0066000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................2113.0033000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTG.......................................................2013.0033000
droYak3
GT------------------------------------------------------------GC--------------CTAGCGTGTATCCTGG-------AT-GAA--------AAGGT-------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCACTA--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22188093.00880931704854662120829732800087
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................2119211.00921191081231021363700083
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2117718.00771807717001000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2011577.001577271528008470003
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................201661.006610661000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201384.003842374003320000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................231318.003180315000210000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................221196.001960192000400000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................231156.001564152000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................222124.0024824224000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191103.001030103000000000
........................................................................................................................................................GGATACACACAGTTCAGTTTTG...............................................................................................22197.0097096000010000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................23191.0091091000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................19167.00671156000000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19152.0052052000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................22150.0050041002700000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22137.0037037000000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................18128.0028026000010001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................23127.0027027000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19127.0027027000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23125.0025025000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................21115.0015015000000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2219.00909000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................1819.00909000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................2118.00817000000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTC.......................................................1818.00808000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................2218.00808000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCC........................................................2017.00761000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................2116.00623000000001
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAAA....................................................2416.00606000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTA...........................................................1714.00400000000004
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................1814.00404000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCATT....................................................2313.00303000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................1813.00303000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.....................................................2213.00303000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAC.....................................................2213.00303000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................2412.00202000000000
.......................................................................................................................................................GGGATACACACAGTTCAGTTTTG...............................................................................................2312.00202000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCC......................................................2112.00202000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACTT...................................................2512.00202000000000
...............................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTCA......................................................2412.00202000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCT......................................................2011.00101000000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAAA....................................................2311.00101000000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCT........................................................2111.00101000000000
...............................................................................................................................................................................................CATCACTGGGCTTTGTTTATCTC.......................................................2311.00101000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................2011.00101000000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAA.....................................................2111.00101000000000
.........................................................................................................................................................GATACACACAGTTCAGTTTTG...............................................................................................2111.00101000000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT......................................................2221.00201000100000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAGC....................................................2411.00101000000000
droEre2
TC------CGA----------------------------------ATGCGAGTATC-CGAGTGC--------------TAGGCGTGTATCCTGG-------CT-GAA--------GAGGT-------------CCTCCGGTTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACACTT--CAA---GCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAATTTGTTCAAC---------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCA......................................................22193046.00930469264102223819144
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTC.......................................................21111122.00111221103100018172
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCA......................................................2117522.0075227522000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCT........................................................2013717.00371736800203329
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTC.......................................................201879.00879879000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCA......................................................201335.00335335000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAA.....................................................231304.00304302000110
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCT........................................................191273.00273273000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCT......................................................221265.00265264000010
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAT.....................................................231165.001651220000043
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATC.........................................................191138.001381280000010
........................................................................................................................................................GGATACACACAGTTCAGTTTTG...............................................................................................22198.009898000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTT.......................................................21160.006060000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTG.......................................................21149.004949000000
....................................................................................................................................................................................................CTGGGCTTTGTTTATCTCA......................................................19146.004646000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTCA......................................................23145.004545000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAG.....................................................23140.004040000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTC.......................................................19136.003636000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAA.....................................................22134.003434000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCAC.....................................................23124.002424000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTAT..........................................................18123.002323000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCC......................................................22120.002020000000
.....................................................................................................................................................................................................TGGGCTTTGTTTATCTCA......................................................18119.001919000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCG......................................................22217.503535000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCT......................................................21116.001616000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCG......................................................21212.502525000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCA........................................................20111.001111000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAT.....................................................22111.001111000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCATT....................................................24110.00104000006
..................................................................................................................................................................................................CACTGGGCTTTGTTTATC.........................................................1818.0088000000
................................................................................................................................................................................................ATCACTGGGCTTTGTTTATCTC.......................................................2216.0066000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCT........................................................1815.0055000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTA.......................................................2115.0055000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTCAG.....................................................2215.0055000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCCA.......................................................2115.0055000000
.........................................................................................................................................................GATACACACAGTTCAGTTTTG...............................................................................................2114.0044000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATA.........................................................1923.0066000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCA........................................................1913.0033000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTTT......................................................2212.0022000000
.......................................................................................................................................................GGGATACACACAGTTCAGTTTTG...............................................................................................2312.0022000000
..................................................................................................................................................................................................CACTGGGCTTTGTTTATCTT.......................................................2012.0022000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCG........................................................2012.0022000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATCTCACC....................................................2412.0022000000
...................................................................................................................................................................................................ACTGGGCTTTGTTTATCTCAT.....................................................2112.0022000000
.................................................................................................................................................................................................TCACTGGGCTTTGTTTA...........................................................1712.0020000002
.................................................................................................................................................................................................TCACTGGGCTTTGTTTATT.........................................................1921.5033000000

Generated: 10/20/2015 at 07:39 PM