dmo-mir-315

TACAAAACAAACGATTGTAAAATAAAAATAATAACCGTCAGCCAAACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAATTTAACTTAACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTTGTCAAAAATTTCAAAAAAATTAAAATACAAAA ********************************************.(((.((((((....(((((((((((((((.(((((((..(((......)))....))))))))))))))))))))))....))))))..)))..****************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	V041 embryo	V056 head	V049 head	M046 female body	V110 male body
.............................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	0	1	394773.00	394773	378156	11250	3434	1495	238	200
.............................................................TGTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	50558.00	50558	50539	11	6	2	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................	22	0	1	24432.00	24432	20743	2498	724	294	103	70
.............................................................TTCTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	7803.00	7803	7783	15	4	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGAC...................................................................................................	23	1	1	5177.00	5177	5145	25	3	4	0	0
.............................................................TTTGGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	3109.00	3109	3091	9	6	3	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	2789.00	2789	2784	4	1	0	0	0
.............................................................TTTCGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	2727.00	2727	2710	9	1	7	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................	24	1	1	2114.00	2114	1802	201	63	35	2	11
.............................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................	24	0	1	2096.00	2096	2043	40	8	4	1	0
.............................................................TTTTGATTGTTGCTCAAAAAGCC...................................................................................................	23	1	1	1795.00	1795	1782	9	3	0	1	0
.............................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................	21	0	1	1779.00	1779	337	231	755	354	64	38
..............................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................	22	0	1	1462.00	1462	1407	23	8	3	19	2
.............................................................TTTAGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	1455.00	1455	1453	1	0	1	0	0
.............................................................CTTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	1179.00	1179	1151	15	7	5	1	0
.............................................................TGCTGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	1144.00	1144	1144	0	0	0	0	0
........................................................................................................CTTTCGAGTAATAATCGAAACC.........................................................	22	0	1	1123.00	1123	1117	1	1	0	4	0
.............................................................TTTTGATTGTTGATCAGAAAGCC...................................................................................................	23	1	1	1064.00	1064	1039	17	3	5	0	0
.............................................................TTTTGATTGTTGCTAAGAAAGCC...................................................................................................	23	1	1	1043.00	1043	1028	5	8	2	0	0
.............................................................TTTTGATTGTTCCTCAGAAAGCC...................................................................................................	23	1	1	1037.00	1037	1018	6	5	5	2	1
.............................................................GTTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	978.00	978	974	3	1	0	0	0
.............................................................TTTTGGTTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	959.00	959	935	12	7	4	0	1
.............................................................TCTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	855.00	855	832	15	5	3	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	666.00	666	665	1	0	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAGCC...................................................................................................	23	1	1	637.00	637	522	35	18	62	0	0
.............................................................TTTTTATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	615.00	615	610	3	1	1	0	0
.............................................................ATTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	562.00	562	561	1	0	0	0	0
............................................................CTTTTGATTGTTGCTCAGAAAGCC...................................................................................................	24	1	1	527.00	527	521	5	1	0	0	0
.............................................................TATTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	516.00	516	515	1	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAATCC...................................................................................................	23	1	1	497.00	497	447	15	15	20	0	0
.............................................................TTTTGATTGTTGCTCTGAAAGCC...................................................................................................	23	1	1	485.00	485	460	18	3	4	0	0
.............................................................TTTTGATTGCTGCTCAGAAAGCC...................................................................................................	23	1	1	450.00	450	413	23	9	5	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	436.00	436	434	0	1	1	0	0
.............................................................TTTTGATTCTTGCTCAGAAAGCC...................................................................................................	23	1	1	418.00	418	413	3	1	1	0	0
.............................................................TGTTGATTGTTGCTAAGAAAGCC...................................................................................................	23	2	1	408.00	408	408	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAACCC...................................................................................................	23	1	1	405.00	405	392	8	4	1	0	0
.............................................................TGTGGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	404.00	404	400	3	1	0	0	0
.............................................................TGTCGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	381.00	381	381	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAGGCC...................................................................................................	23	1	1	357.00	357	331	18	5	3	0	0
.............................................................TTTTGATTGTTACTCAGAAAGCC...................................................................................................	23	1	1	355.00	355	339	14	1	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................	23	1	1	347.00	347	254	33	37	13	1	9
.............................................................TTTTGATTGTTGCTCATAAAGCC...................................................................................................	23	1	1	341.00	341	276	33	13	19	0	0
.............................................................TTTTGATTTTTGCTCAGAAAGCC...................................................................................................	23	1	1	336.00	336	328	2	1	5	0	0
..............................................................TTTTATTGTTGCTCAGAAAGCC...................................................................................................	22	1	1	311.00	311	310	0	0	0	0	1
.............................................................TTTTGATTGTTGCTCAGAATGCC...................................................................................................	23	1	1	310.00	310	306	3	1	0	0	0
...............................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................	21	0	1	291.00	291	279	5	2	0	5	0
.............................................................TTTTGATTGTTGCTTAGAAAGCC...................................................................................................	23	1	1	280.00	280	269	9	1	1	0	0
.............................................................TTTTGATTGTTGCTCAGGAAGCC...................................................................................................	23	1	1	273.00	273	242	23	5	3	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGCCC..................................................................................................	24	1	1	271.00	271	271	0	0	0	0	0
.............................................................TTTTGAGTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	270.00	270	259	7	3	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAACC...................................................................................................	23	1	1	269.00	269	253	14	1	1	0	0
.............................................................TGTTGATTGTTGATCAGAAAGCC...................................................................................................	23	2	1	257.00	257	255	1	0	1	0	0
.............................................................TTTTAATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	255.00	255	240	13	1	1	0	0
.............................................................TGTTGATTGTTGCTCAAAAAGCC...................................................................................................	23	2	1	252.00	252	252	0	0	0	0	0
.............................................................TTTTGATTGTTGCCCAGAAAGCC...................................................................................................	23	1	1	250.00	250	217	19	10	4	0	0
.............................................................TTTTGTTTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	249.00	249	243	5	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAGAGCC...................................................................................................	23	1	1	236.00	236	211	21	3	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAA......................................................................................................	20	0	1	220.00	220	16	8	109	60	21	6
.............................................................TGTTGATTGTTGCTCAGAAAGCCT..................................................................................................	24	2	1	215.00	215	215	0	0	0	0	0
.............................................................TTTTGATTATTGCTCAGAAAGCC...................................................................................................	23	1	1	207.00	207	193	9	3	1	1	0
.............................................................TTTTGATTGGTGCTCAGAAAGCC...................................................................................................	23	1	1	207.00	207	184	12	7	4	0	0
.............................................................TTTTGATTGTTGCTCGGAAAGCC...................................................................................................	23	1	1	202.00	202	191	8	3	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................	24	1	1	201.00	201	114	47	23	11	3	3
.............................................................TGTAGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	192.00	192	192	0	0	0	0	0
.............................................................TTTTGATCGTTGCTCAGAAAGCC...................................................................................................	23	1	1	179.00	179	166	8	4	0	1	0
..............................................................TGTGATTGTTGCTCAGAAAGCC...................................................................................................	22	1	1	175.00	175	175	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................	23	1	1	174.00	174	169	4	1	0	0	0
.............................................................TTTGGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	173.00	173	167	2	3	1	0	0
........................................................................................................CGTTCGAGTAATAATCGAAACC.........................................................	22	1	1	173.00	173	173	0	0	0	0	0
.............................................................TTTTGATTGATGCTCAGAAAGCC...................................................................................................	23	1	1	157.00	157	152	4	1	0	0	0
.............................................................TTTCGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	154.00	154	149	2	3	0	0	0
.............................................................TTTTCATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	154.00	154	149	4	1	0	0	0
.............................................................TTTTGATTGTTGCTCAAAAGCC....................................................................................................	22	3	5	148.40	742	740	1	1	0	0	0
.............................................................TTTTGATTGTCGCTCAGAAAGCC...................................................................................................	23	1	1	148.00	148	138	6	4	0	0	0
.............................................................TGTTGATTGTTCCTCAGAAAGCC...................................................................................................	23	2	1	146.00	146	144	1	1	0	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	141.00	141	141	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGTC...................................................................................................	23	1	1	139.00	139	100	30	7	2	0	0
.............................................................TTTTGATTGTTGTTCAGAAAGCC...................................................................................................	23	1	1	126.00	126	91	24	10	1	0	0
.............................................................TTTTGATATTTGCTCAGAAAGCC...................................................................................................	23	2	1	124.00	124	124	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGTAAGCC...................................................................................................	23	1	1	117.00	117	105	8	3	1	0	0
.............................................................TGTTGATTGTTGATAAGAAAGCC...................................................................................................	23	3	1	116.00	116	115	1	0	0	0	0
.............................................................TTTTGATTGTTGATAAGAAAGCC...................................................................................................	23	2	1	115.00	115	110	2	2	1	0	0
..............................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................	23	0	1	111.00	111	105	4	1	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................	23	1	1	102.00	102	31	30	31	9	0	1
.............................................................TTTTGATTGTTGCTCAGCAAGCC...................................................................................................	23	1	1	101.00	101	10	76	3	12	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................	22	1	1	100.00	100	61	4	22	9	1	3
.............................................................TTTTGATTGTTGCTCAGAAGCC....................................................................................................	22	2	1	96.00	96	93	1	2	0	0	0
..............................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................	21	0	1	95.00	95	77	6	1	0	11	0
..............................................................TTTCATTGTTGCTCAGAAAGCC...................................................................................................	22	1	1	90.00	90	90	0	0	0	0	0
.............................................................TTTTGATTGTTCCTAAGAAAGCC...................................................................................................	23	2	1	87.00	87	86	1	0	0	0	0
.............................................................TTCTGATTGTTGATCAGAAAGCC...................................................................................................	23	2	1	86.00	86	85	1	0	0	0	0
.............................................................TTTTGATTGTTGCTCACAAAGCC...................................................................................................	23	1	1	85.00	85	55	12	14	4	0	0
.............................................................TTTTGATTGTTGCTCAGAA.......................................................................................................	19	0	1	84.00	84	5	3	47	20	8	1
.............................................................TGTTGATTGTTGCTCTGAAAGCC...................................................................................................	23	2	1	83.00	83	81	1	1	0	0	0
.............................................................TGTTGATCGTTGCTCAGAAAGCC...................................................................................................	23	2	1	82.00	82	82	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGA........................................................................................................	18	0	1	80.00	80	6	3	38	33	0	0
.............................................................TTTTGATTGTTGATCAGAAAGAC...................................................................................................	23	2	1	79.00	79	79	0	0	0	0	0
.............................................................CTTTGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	78.00	78	71	5	1	1	0	0
.............................................................TGTTTATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	77.00	77	77	0	0	0	0	0
.............................................................CGTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	77.00	77	77	0	0	0	0	0
.............................................................TTTTGATTGTTGATCAGAAAGC....................................................................................................	22	1	1	73.00	73	68	3	2	0	0	0
.............................................................TTTTGATTGTTGCTCCGAAAGCC...................................................................................................	23	1	1	73.00	73	18	30	10	15	0	0
.............................................................TTTAGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	72.00	72	72	0	0	0	0	0
.............................................................TTGTGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	71.00	71	42	16	10	3	0	0
.............................................................TGCTGATTGTTGCTCAGAAAGC....................................................................................................	22	2	1	71.00	71	71	0	0	0	0	0
.............................................................TTTTGACTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	70.00	70	63	5	2	0	0	0
.............................................................TGTTGATTGTTGCTCAGAATGCC...................................................................................................	23	2	1	70.00	70	70	0	0	0	0	0
.............................................................TGTTGAGTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	68.00	68	64	3	0	1	0	0
.............................................................TGTTGATTGTTGCTCAGAAACCC...................................................................................................	23	2	1	68.00	68	67	0	1	0	0	0
...............................................................TTTATTGTTGCTCAGAAAGCC...................................................................................................	21	1	1	68.00	68	68	0	0	0	0	0
.............................................................TTTTGATTGTTGCGCAGAAAGCC...................................................................................................	23	1	1	66.00	66	59	4	2	1	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGGC...................................................................................................	23	1	1	66.00	66	49	17	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAAGCC..................................................................................................	24	2	1	62.00	62	61	1	0	0	0	0
.............................................................TGTTGATTGCTGCTCAGAAAGCC...................................................................................................	23	2	1	61.00	61	61	0	0	0	0	0
.............................................................TTTTGATTGTTGCTAAGAAAGC....................................................................................................	22	1	1	60.00	60	56	4	0	0	0	0
............................................................CGTTTGATTGTTGCTCAGAAAGCC...................................................................................................	24	2	1	60.00	60	60	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACGCC...................................................................................................	23	1	1	59.00	59	13	27	7	12	0	0
.............................................................TTATGATTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	57.00	57	55	2	0	0	0	0
.............................................................TTTTGATTGTTGCTCAAAAAGC....................................................................................................	22	1	1	57.00	57	54	1	1	1	0	0
.............................................................TTTTGATTGTTGCTCATAAAGAC...................................................................................................	23	2	1	57.00	57	57	0	0	0	0	0
.............................................................TGTTGATTTTTGCTCAGAAAGCC...................................................................................................	23	2	1	57.00	57	57	0	0	0	0	0
.............................................................TTTTGATTGTTCCTCAGAAAGC....................................................................................................	22	1	1	57.00	57	52	1	2	2	0	0
.............................................................TTTTGATTGTTGCTAAGAAAGAC...................................................................................................	23	2	1	56.00	56	55	1	0	0	0	0
.............................................................TGTTGATTGTTTCTCAGAAAGCC...................................................................................................	23	2	1	56.00	56	56	0	0	0	0	0
.............................................................TTTTGATAGTTGCTCAGAAAGCC...................................................................................................	23	1	1	55.00	55	54	1	0	0	0	0
.............................................................TCTTGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	53.00	53	51	1	1	0	0	0
.............................................................GTTTGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	53.00	53	51	2	0	0	0	0
............................................................ATTTTGATTGTTGCTCAGAAAGC....................................................................................................	23	0	1	53.00	53	43	4	4	2	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGCCC..................................................................................................	24	1	1	52.00	52	51	1	0	0	0	0
.............................................................TGTTGATTGTTGCCCAGAAAGCC...................................................................................................	23	2	1	51.00	51	51	0	0	0	0	0
...........................................................TCTTTTGATTGTTGCTCAGAAAGCC...................................................................................................	25	2	1	51.00	51	51	0	0	0	0	0
..............................................................TGTTATTGTTGCTCAGAAAGCC...................................................................................................	22	2	1	50.00	50	50	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................	22	1	1	49.00	49	8	8	22	8	2	1
.............................................................GGTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	49.00	49	49	0	0	0	0	0
.............................................................TTTTGGTTGTTGCTCAGAAAGC....................................................................................................	22	1	1	48.00	48	44	4	0	0	0	0
.............................................................TGTTGATTGTTGCTCATAAAGCC...................................................................................................	23	2	1	48.00	48	48	0	0	0	0	0
............................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................	24	0	1	48.00	48	47	1	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGACAGCC...................................................................................................	23	1	1	46.00	46	2	30	2	12	0	0
.............................................................TGTTGATTGTTGCTCAGAAGGCC...................................................................................................	23	2	1	45.00	45	45	0	0	0	0	0
.............................................................TGTTGATTCTTGCTCAGAAAGCC...................................................................................................	23	2	1	45.00	45	45	0	0	0	0	0
.............................................................TTTTTATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	45.00	45	45	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAAG.....................................................................................................	21	1	1	44.00	44	42	0	1	1	0	0
.............................................................TTTTGATTGTTGGTCAGAAAGCC...................................................................................................	23	1	1	44.00	44	38	3	3	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAGC....................................................................................................	22	1	1	43.00	43	21	7	6	9	0	0
.............................................................TATTGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	42.00	42	42	0	0	0	0	0
.............................................................TGTTGATTGTTGCTTAGAAAGCC...................................................................................................	23	2	1	42.00	42	42	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAAACC...................................................................................................	23	2	1	41.00	41	41	0	0	0	0	0
.............................................................TTTTGATTGTTGCACAGAAAGCC...................................................................................................	23	1	1	41.00	41	38	3	0	0	0	0
.............................................................TGTTGATTGTTACTCAGAAAGCC...................................................................................................	23	2	1	40.00	40	40	0	0	0	0	0
.............................................................TTTTGATTGTAGCTCAGAAAGCC...................................................................................................	23	1	1	40.00	40	39	1	0	0	0	0
.............................................................TGTTGATAGTTGCTCAGAAAGCC...................................................................................................	23	2	1	40.00	40	40	0	0	0	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGCCT..................................................................................................	24	2	1	39.00	39	39	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCTGAAAGC....................................................................................................	22	1	1	39.00	39	35	3	1	0	0	0
.............................................................TGTTGATTGGTGCTCAGAAAGCC...................................................................................................	23	2	1	37.00	37	35	0	2	0	0	0
.............................................................TGTTAATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	36.00	36	36	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAATCC...................................................................................................	23	2	1	36.00	36	35	0	1	0	0	0
...............................................................TGGATTGTTGCTCAGAAAGCC...................................................................................................	21	1	1	35.00	35	35	0	0	0	0	0
.............................................................TTTCGATTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	32.00	32	32	0	0	0	0	0
.............................................................TTTGGATTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	32.00	32	30	2	0	0	0	0
.............................................................TGTTGGTTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	32.00	32	32	0	0	0	0	0
.............................................................TTTTGATGATTGCTCAGAAAGCC...................................................................................................	23	2	1	32.00	32	32	0	0	0	0	0
.............................................................TTTTGCTTGTTGCTCAGAAAGCC...................................................................................................	23	1	1	31.00	31	13	8	6	4	0	0
.............................................................TTTTGATTGTTGCTCAGGAAGC....................................................................................................	22	1	1	31.00	31	21	5	3	2	0	0
.............................................................TTCTGATTGTTGCTCAAAAAGCC...................................................................................................	23	2	1	31.00	31	31	0	0	0	0	0
.............................................................TTTTGATTGTTGCTGAGAAAGCC...................................................................................................	23	1	1	31.00	31	28	3	0	0	0	0
.............................................................TTTTGATGGTTGCTCAGAAAGCC...................................................................................................	23	1	1	31.00	31	25	3	3	0	0	0
.............................................................ATTTGATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	31.00	31	29	2	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGGAAGCC...................................................................................................	23	2	1	30.00	30	27	2	0	1	0	0
.............................................................TGTTCATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	30.00	30	30	0	0	0	0	0
.............................................................TGTTGATTGTTGCTAAGAAAGC....................................................................................................	22	2	1	30.00	30	30	0	0	0	0	0
.............................................................TTCTGATTGTTCCTCAGAAAGCC...................................................................................................	23	2	1	30.00	30	29	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAAC....................................................................................................	22	1	1	29.00	29	26	1	1	1	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGCT...................................................................................................	23	2	1	29.00	29	28	0	1	0	0	0
.............................................................TTTTGATTGTTGCTCATAAAGC....................................................................................................	22	1	1	28.00	28	19	0	5	4	0	0
.............................................................TTTTGATTGCTGCTCAGAAAGC....................................................................................................	22	1	1	28.00	28	20	4	2	2	0	0
.............................................................AGTTGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	27.00	27	27	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGATAGCC...................................................................................................	23	1	1	27.00	27	24	3	0	0	0	0
.........................................................................................................TTTCGAGTAATAATCGAAACC.........................................................	21	0	1	26.00	26	26	0	0	0	0	0
............................................................CTTTTGATTGTTGCTCAGAAAGC....................................................................................................	23	1	1	26.00	26	24	2	0	0	0	0
........................................................................................................CTCTCGAGTAATAATCGAAACC.........................................................	22	1	1	26.00	26	26	0	0	0	0	0
.............................................................TGTTGATTGTTGCTAAGAAATCC...................................................................................................	23	3	1	25.00	25	25	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAATAC...................................................................................................	23	2	1	25.00	25	25	0	0	0	0	0
.............................................................TGTGGATTGTTGCTCAGAAAGC....................................................................................................	22	2	1	24.00	24	22	0	2	0	0	0
.............................................................TTTTGATTGTTGCTTAGAAAGC....................................................................................................	22	1	1	24.00	24	20	3	1	0	0	0
.............................................................TTTTGATTATTGCTCAGAAAGC....................................................................................................	22	1	1	24.00	24	20	1	2	1	0	0
..............................................................TTTAATTGTTGCTCAGAAAGCC...................................................................................................	22	1	1	23.00	23	23	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAATC....................................................................................................	22	1	1	23.00	23	14	3	5	1	0	0
.............................................................TTTTGATTGTTGCTCAGAGAGC....................................................................................................	22	1	1	23.00	23	14	7	2	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGTC...................................................................................................	23	2	1	23.00	23	22	0	1	0	0	0
.............................................................TGTTGATTATTGCTCAGAAAGCC...................................................................................................	23	2	1	23.00	23	23	0	0	0	0	0
.............................................................TTTTGATTGTTGCCCAGAAAGC....................................................................................................	22	1	1	23.00	23	19	1	0	3	0	0
.............................................................TTTTGATTGTTGCTCAAAAAGAC...................................................................................................	23	2	1	22.00	22	22	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCGGAAAGCC...................................................................................................	23	2	1	22.00	22	22	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGCG...................................................................................................	23	2	1	22.00	22	22	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAGAGCC...................................................................................................	23	2	1	22.00	22	21	0	1	0	0	0
..............................................................TTCGATTGTTGCTCAGAAAGCC...................................................................................................	22	1	1	22.00	22	22	0	0	0	0	0
..............................................................TTTTATTGTTGCTCAGAAAGC....................................................................................................	21	1	1	21.00	21	21	0	0	0	0	0
...............................................................TTGATTGTTGCTCAGAAAGC....................................................................................................	20	0	1	21.00	21	19	0	0	0	2	0
.............................................................TTTTGATTGTTGCTCAGCAAGC....................................................................................................	22	1	1	21.00	21	0	18	0	3	0	0
.................................................................GATTGTTGCTCAGAAAGCC...................................................................................................	19	0	1	21.00	21	17	3	1	0	0	0
.............................................................TGTTGATTGATGCTCAGAAAGCC...................................................................................................	23	2	1	21.00	21	21	0	0	0	0	0
.............................................................TGTTGATTGTTGTTCAGAAAGCC...................................................................................................	23	2	1	20.00	20	20	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAATGC....................................................................................................	22	1	1	20.00	20	18	2	0	0	0	0
.............................................................TTTTGATTGTTACTCAGAAAGC....................................................................................................	22	1	1	20.00	20	17	2	1	0	0	0
..............................................................TGTGATTGTTGCTCAGAAAGCCC..................................................................................................	23	1	1	19.00	19	19	0	0	0	0	0
.............................................................TTTTAATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	19.00	19	16	1	1	1	0	0
.............................................................TTTTGATTCTTGCTCAGAAAGC....................................................................................................	22	1	1	19.00	19	18	1	0	0	0	0
.............................................................TTTTGATTGGTGCTCAGAAAGC....................................................................................................	22	1	1	19.00	19	12	4	1	2	0	0
.............................................................TTTTGATTGTTGCTCAGAAACCCC..................................................................................................	24	1	1	19.00	19	19	0	0	0	0	0
..............................................................TTTGATTGTTGCTCAGAAAGAC...................................................................................................	22	1	1	19.00	19	19	0	0	0	0	0
.............................................................TTTCGATTGTTGCTCAGAAAGCCC..................................................................................................	24	1	1	18.00	18	18	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCGGAAAGC....................................................................................................	22	1	1	18.00	18	9	6	3	0	0	0
..........................................................ATCTTTTGATTGTTGCTCAGAAAGCC...................................................................................................	26	3	1	18.00	18	18	0	0	0	0	0
.............................................................TTTTGAATGTTGCTCAGAAAGCC...................................................................................................	23	1	1	18.00	18	18	0	0	0	0	0
.............................................................TTTTGAGTGTTGCTCAGAAAGC....................................................................................................	22	1	1	18.00	18	16	2	0	0	0	0
................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................	20	0	1	17.00	17	16	0	0	0	1	0
.............................................................TTTTGATTGTTGCTCAGAAGGC....................................................................................................	22	1	1	17.00	17	9	1	5	1	0	1
.............................................................CTTTGATTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	16.00	16	16	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACGC....................................................................................................	22	1	1	16.00	16	1	8	1	6	0	0
.............................................................TTTTGATTGTTGCTCATAAATCC...................................................................................................	23	2	1	16.00	16	11	1	2	2	0	0
.............................................................TTTTGATTGTTGCTAAGAAATCC...................................................................................................	23	2	1	16.00	16	16	0	0	0	0	0
.............................................................TTTTGATTTTTGCTCAGAAAGC....................................................................................................	22	1	1	16.00	16	13	1	2	0	0	0
.............................................................TGTTGATATTTGCTCAGAAAGCC...................................................................................................	23	3	1	15.00	15	15	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAAAGCCA..................................................................................................	24	2	1	15.00	15	14	0	0	1	0	0
.............................................................TTTTGATTGTTCCTCAGAAAGAC...................................................................................................	23	2	1	15.00	15	15	0	0	0	0	0
.............................................................TTTTGATTGTTGCTAAGAATGCC...................................................................................................	23	2	1	14.00	14	14	0	0	0	0	0
.............................................................TGTCGATTGTTGCTCAGAAAGC....................................................................................................	22	2	1	14.00	14	14	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGTAAGC....................................................................................................	22	1	1	14.00	14	12	2	0	0	0	0
.............................................................TGCTGATTGTTGCTCAGAAAGAC...................................................................................................	23	3	1	14.00	14	14	0	0	0	0	0
.............................................................TTTTGATTGTTTCTCATAAAGCC...................................................................................................	23	2	1	14.00	14	0	4	2	8	0	0
.............................................................CTCTGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	14.00	14	14	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAACC....................................................................................................	22	1	1	14.00	14	14	0	0	0	0	0
.............................................................TTTTGTTTGTTGCTCAGAAAGC....................................................................................................	22	1	1	14.00	14	12	1	1	0	0	0
.............................................................TTTTGATTGTTGCTCATAAAG.....................................................................................................	21	1	1	14.00	14	2	0	4	8	0	0
.............................................................TTTAGATTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	13.00	13	13	0	0	0	0	0
.............................................................TTTTGGTTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	13.00	13	13	0	0	0	0	0
.............................................................TTTAGATTGTTGCTCAGAAAGCCT..................................................................................................	24	2	1	13.00	13	13	0	0	0	0	0
............................................................CTCTTGATTGTTGCTCAGAAAGCC...................................................................................................	24	2	1	13.00	13	13	0	0	0	0	0
...............................................................TGTATTGTTGCTCAGAAAGCC...................................................................................................	21	2	1	13.00	13	13	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAACG.....................................................................................................	21	1	1	13.00	13	0	1	4	8	0	0
.............................................................TTTGGATTGTTGCTCAGAAAGCCC..................................................................................................	24	1	1	13.00	13	13	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGCAAG.....................................................................................................	21	1	1	12.00	12	0	2	1	9	0	0
.............................................................TGTAGATTGTTGCTCAGAAAGC....................................................................................................	22	2	1	12.00	12	12	0	0	0	0	0
.............................................................TTTTGATTGTTCCTCAGAAAGCCT..................................................................................................	24	2	1	12.00	12	12	0	0	0	0	0
........................................................................................................CTTTCGAGTAATAATCGAAAC..........................................................	21	0	1	12.00	12	11	0	0	1	0	0
.............................................................TTTTGATTGTGGCTCAGAAAGCC...................................................................................................	23	1	1	12.00	12	8	1	3	0	0	0
.............................................................TTCTGATTGTTGCTCAGAAAG.....................................................................................................	21	1	1	12.00	12	9	1	1	1	0	0
............................................................TTTTTGATTGTTGCTCAGAAAGCC...................................................................................................	24	1	1	12.00	12	12	0	0	0	0	0
.............................................................TTTTCATTGTTGCTCAGAAAGC....................................................................................................	22	1	1	12.00	12	12	0	0	0	0	0
...............................................................TTGTTTGTTGCTCAGAAAGCC...................................................................................................	21	1	1	12.00	12	12	0	0	0	0	0
.............................................................TTCTGTTTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	12.00	12	12	0	0	0	0	0
.............................................................TGTTGATTGTCGCTCAGAAAGCC...................................................................................................	23	2	1	12.00	12	12	0	0	0	0	0
.............................................................TTTTGATCGTTGCTCAGAAAGC....................................................................................................	22	1	1	12.00	12	10	2	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGACC..................................................................................................	24	1	1	11.00	11	10	0	1	0	0	0
.............................................................TTTCGATTGTTGCTCAGAAAGCCT..................................................................................................	24	2	1	11.00	11	11	0	0	0	0	0
........................................................................................................CTTTCGAGTACTAATCGAAACC.........................................................	22	1	1	11.00	11	11	0	0	0	0	0
..................................................................ATTGTTGCTCAGAAAGCC...................................................................................................	18	0	1	11.00	11	8	1	0	1	1	0
.............................................................TTTTGATTGTTGCTCCGAAAGC....................................................................................................	22	1	1	11.00	11	2	3	1	5	0	0
.............................................................TTTGGATTGTTCCTCAGAAAGCC...................................................................................................	23	2	1	11.00	11	10	0	1	0	0	0
.............................................................TGTTGATTGTTGCACAGAAAGCC...................................................................................................	23	2	1	11.00	11	11	0	0	0	0	0
.............................................................TTCTGATTGTTGCTAAGAAAGCC...................................................................................................	23	2	1	11.00	11	11	0	0	0	0	0
.............................................................TTCTTATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	11.00	11	11	0	0	0	0	0
.......................................................................................................CCTTTCGAGTAATAATCGAAACC.........................................................	23	1	1	10.00	10	10	0	0	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAGAC...................................................................................................	23	2	1	10.00	10	9	1	0	0	0	0
.............................................................TTTTGACTGTTGCTCAGAAAGC....................................................................................................	22	1	1	10.00	10	6	0	4	0	0	0
.............................................................TTTTGATTGTTGTTCAGAAAGC....................................................................................................	22	1	1	10.00	10	7	3	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................	22	1	1	10.00	10	3	7	0	0	0	0
.............................................................TTTTGAGTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	10.00	10	10	0	0	0	0	0
.............................................................TTTTGATTGTCGCTCAGAAAGC....................................................................................................	22	1	1	10.00	10	8	2	0	0	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGCG...................................................................................................	23	2	1	10.00	10	10	0	0	0	0	0
............................................................AGTTTGATTGTTGCTCAGAAAGC....................................................................................................	23	1	1	10.00	10	10	0	0	0	0	0
.............................................................TGTTGATTGTTGCTCAGAATGC....................................................................................................	22	2	1	10.00	10	10	0	0	0	0	0
.............................................................TTCTGATTGTTGCCCAGAAAGCC...................................................................................................	23	2	1	10.00	10	10	0	0	0	0	0
.............................................................TTTTTATTGTTGCTCAGAAAGAC...................................................................................................	23	2	1	10.00	10	10	0	0	0	0	0
..............................................................TTTGATTGTTGCTCAAAAAGCC...................................................................................................	22	1	1	10.00	10	10	0	0	0	0	0
.............................................................TTCTGATTCTTGCTCAGAAAGCC...................................................................................................	23	2	1	10.00	10	10	0	0	0	0	0
.............................................................TTTCGATTGTTGCTCAAAAAGCC...................................................................................................	23	2	1	9.00	9	9	0	0	0	0	0
.............................................................TGTTGAGTGTTGCTCTGAAAGCC...................................................................................................	23	3	1	9.00	9	9	0	0	0	0	0
.............................................................TTCTGATTGTTACTCAGAAAGCC...................................................................................................	23	2	1	9.00	9	9	0	0	0	0	0
.............................................................GGTTGATTGTTGCTCAGAAAGC....................................................................................................	22	2	1	9.00	9	9	0	0	0	0	0
.............................................................TTTTGATTGTTTCTCAGAAAG.....................................................................................................	21	1	1	9.00	9	0	0	2	7	0	0
.............................................................TTTTGATTGGTGCTCAGAAAG.....................................................................................................	21	1	1	9.00	9	0	3	5	1	0	0
.............................................................TTTTGATTGTTGCTCAGAGAGAC...................................................................................................	23	2	1	9.00	9	8	1	0	0	0	0
.............................................................TGTTGATTGTTGCGCAGAAAGCC...................................................................................................	23	2	1	9.00	9	9	0	0	0	0	0
.............................................................TTCTGATTGTTGCTCAGAAAGCT...................................................................................................	23	2	1	9.00	9	9	0	0	0	0	0
.............................................................TGTTGATTGTTGGTCAGAAAGCC...................................................................................................	23	2	1	9.00	9	9	0	0	0	0	0
.............................................................TTTGGATTGTTGCTCAGAAAGCCT..................................................................................................	24	2	1	9.00	9	9	0	0	0	0	0
..............................................................CTTGATTGTTGCTCAGAAAGCC...................................................................................................	22	1	1	9.00	9	9	0	0	0	0	0
.............................................................TTTGGATTGTTGCTCAAAAAGCC...................................................................................................	23	2	1	9.00	9	9	0	0	0	0	0
....................................................................................CGTAATTTAACTTAACATGG...............................................................................	20	0	1	9.00	9	9	0	0	0	0	0
...............................................................TTCATTGTTGCTCAGAAAGCC...................................................................................................	21	1	1	9.00	9	9	0	0	0	0	0
...............................................................TTAATTGTTGCTCAGAAAGCC...................................................................................................	21	1	1	9.00	9	9	0	0	0	0	0
..............................................................TGTGATTGTTGCTCAGAAAGC....................................................................................................	21	1	1	8.00	8	8	0	0	0	0	0
.............................................................TTTTGATTGTTGCTTAGAAAGAC...................................................................................................	23	2	1	8.00	8	8	0	0	0	0	0
..............................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................	20	0	1	8.00	8	0	0	2	0	6	0
........................................................................................................TTTTCGAGTAATAATCGAAACC.........................................................	22	1	1	8.00	8	8	0	0	0	0	0
.............................................................TTTGGATTGTTGATCAGAAAGCC...................................................................................................	23	2	1	8.00	8	5	1	1	1	0	0
.............................................................TGGTGATTGTTGCTCAGAAAGCC...................................................................................................	23	2	1	8.00	8	2	2	3	1	0	0
.............................................................TGTTGATTGTTGCTCACAAAGCC...................................................................................................	23	2	1	8.00	8	8	0	0	0	0	0
.............................................................TTCTGATTGCTGCTCAGAAAGCC...................................................................................................	23	2	1	8.00	8	8	0	0	0	0	0
.............................................................TTTTGATTGTTGCTCAGAAACAC...................................................................................................	23	2	1	8.00	8	8	0	0	0	0	0

ATGTTTTGTTTGCTAACATTTTATTTTTATTATTGGCAGTCGGTTTGCCTGGGAATATATTAAAACTAACAACGAGTCTTTCGGGCATTAAATTGAATTGTACCGAAAGCTCATTATTAGCTTTGGTTTATTCCGTAGGTTTGTAGTAAAACAGTTTTTAAAGTTTTTTTAATTTTATGTTTT ****************************************.(((.((((((....(((((((((((((((.(((((((..(((......)))....))))))))))))))))))))))....))))))..)))..********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo
......................................................................................................CCGAAAACTCGTTGTTAGCTTT...........................................................	22	3	2	3.00	6	6
......................................................................................................CCGAAAGCTCGTTGTTAGTTTT...........................................................	22	3	3	1.00	3	3
.......................................................................................................CGAAAACTCGTTGTTAGCTTT...........................................................	21	3	11	0.09	1	1

Species	Coordinate	ID	Type	Alignment
droMoj3	scaffold_6680:23648522-23648704 -	dmo-mir-315	Known_mirbase	TACA---------AAACAAACG-------A-----------------------------------------------------------------------------------------------T-------------------TG--TAAAAT-AAAA---ATAAT--AACCGT-CA--------------------------------GC------------------------------------C--AAACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAATTTAACTTA--ACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTT-----GTCAA----AAA-------TT-TCAAAAAAAT------------------------TAAAATA-----------------------------CA--------AAA
droVir3	scaffold_13049:18083575-18083764 -	dvi-mir-315a	Known_mirbase	TACA----------GTAAAATGCCAAATAATCAAACAAAC------------------------AAGTGCA-AGTGCCAAACATTTT--------------------------CCAAGTTA--------------------------------------------------------------CAACTCCATTTCCTTCCTACCT-----------------------------------------CACA--AAACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA---TTCAATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGTTT---------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:24135458-24135696 -	dgr-mir-315	Known_mirbase	CTCA----------G-CAAACA-------GTTGCAAAAAGAAATATAATACAATGAACAATCAAGAGT---------------------------------------------TCAAG--------------------------------------------TGCTAT--AA-TTTATGGTTACTAGTGTGTTCTCCTGATGCCTGAAACAGC-------------------------------CAACTA--CTATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA---CTTGACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAATTA-----CTCAA----ACATT--AAC--C----CACATG------------------------------------------------------------CT--------CAA
droWil2	scf2_1100000004768:104750-104985 +	dwi-mir-315	Known_mirbase	GTGA---------AACTAAATG-------T---------T------------------------AAGTGTAAAGTGTTAATGGTCCTTTAGCATCATCATTTGGTAAACTGAA--TGTTTGTGAAT----------------------------------------------------------------------------------------T----GGTT--TGCTT-ATT-----T------GCCC--ATCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA--CTTTATCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACAGTTT------TCAA----CCATAGAAA----TCCAACTATT-----TTGA-------------------AAC-----------------------------GA--------AAC
dp5	XR_group6:4103803-4103994 -	dps-mir-315	Known_mirbase	TCCA----------TT-------------------------------------------------------------------------------------------------CCAAGTTGTGCATTTTTTTGTGTGAATTCAATTGTG-AA---------------------------------------------------AG--------------------------------TATA-----------AGCCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA---TTAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT--AGTGTGAA----ATA-------CT-TGACTCAAAG------------------------GTAAGTG-----------------------------AA--------AAA
droPer2	scaffold_9:2393034-2393202 -	dpe-mir-315	Known_mirbase	TCCA----------TT-------------------------------------------------------------------------------------------------CCAAGTTGTGCATTTTTTTGTGTGAATTCCATTGTG-AA---------------------------------------------------AG--------------------------------TAT---------A--AACCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA---TTAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT--AGTGTGAA----ATA-------C-------------------------------------------------------------------------------------
droAna3	scaffold_13337:18585451-18585676 -	dan-mir-315	Known_mirbase	AATA---------AAAC----CCTAAATAGTCTTAAAAAGAATTC--------------------------------------------------------------------TTAACTC------------------------TTGTG-AAAACTC----TTGCAAT--AA-TCTTTG--------------------------------GCTGTAATAGTT--TGGCT-TTTTTATATAAGAGCTCCT--AAATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA---ATTATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACATTTT-AAGTGTGAA----ATA-------TT---------------------------------------------------------------------------------CTT
droBip1	scf7180000396741:1773697-1773945 -			TCCT------------AAAATA-------GCCCACATAAGAAATC--------------------------------------------------------------------TTAACTTGTGCCT------------------TTGTG-AAAACTTAAAATTGTAAT--AAT-CTTTG--------------------------------GCTGAAATTGGT--TGGCT-TTTTTATATAAGAGATCCT--AAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAT---ATTTAAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACATTTT-AATTGTGAA----AAA-------TA-ACTAGAAAGG------------------------GTAAGCA-----------------------------TA--------TAA
droKik1	scf7180000302248:117454-117715 -			CATAATAAGTAAATCCCCT----------------------------------------------------------------------------------------------CCAACTTGTG----------------------TG--TAAATCTCAAAAGTGTAAC--AATCCTTTG--------------------------------GCTA----AATTTTTGG----TTTTATATAAGAGTTCCTGGAAATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TA---TTTATCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTATGAAGTGTGATTTAGT------------TG-TTAAAGG------------------------GTAAGTGTTTTCTAAAATAATGTTTATTTGTTAATATA--------AGT
droFic1	scf7180000453824:210528-210709 +			CATC---------CTC-------------------------------------------------------------------------------------------------CCATCTTGTGCTT-------------------TG--TGATTCTGAAAATAGTGT---AACCCTTTG--------------------------------GCTAA---AGTT--TGGTT-CTTTTATATAAGAGCTCCT--GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA---CTTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACA---------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490993:1762403-1762611 +			T-------------------------------------------------------------------------------------------------------------------------------------------------G--TGATTCTCAAAATTGTGTT--AACCCTTTG--------------------------------GCTA----AGTT--TGGTT-GTTTTATATAAGAGTTCCTG-GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA---TTTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGAAT------GTGATTTAATTA-------G-------------------------ACTTCAAAATGGTAAGTG-----------------------------AACACT----GAT
droRho1	scf7180000758207:1401-1611 +			CCC---------------------------------------------------------------------------------------------------------------CAACTTGTGCAT-------------------TG--TGACTTACAAAATTGTGTT--TACCTTTTG--------------------------------GCTA----AGTT--TGGTT-GTTTTATATAAGAGTTTCT--GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATA---TTT-ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGTTTT-----GTGATTTAAA-----------C----GAGATG------------------------GTAAGTG-----------------------------AA---------CA
droBia1	scf7180000302529:650405-650589 -			TAGA-----------CCAA----------------------------------------------------------------------------------------------CCAACTTGTGCAT-------------------TG--TGCCTCCCA-AATTGTGTT--ACCCTTTTG--------------------------------GCTA----AGTTT-CGG-----CTTATATAAGAGCTCCT--CAGCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA---TTTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTT---------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415184:198561-198773 -			TACA----------TCCAAATA-------GC--------------------------------------------------------------------------------------TTTGTGCAT-------------------AG--TGATTTTCAAAATTGTGTT--AACCTTTTG--------------------------------GCTA----AGTT--TGGTT-ACTTTATATAAGAGCTCCT--GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA---CTTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGATT------GTTAGTTAATTG-------C---GTCT-T---AA---------------------------------------------------------------------GA
droEug1	scf7180000409471:636138-636332 -			AATA----------------------------------------------------------------------------------------------------------------ACTT--TTAT-------------------TG--TGATTCCCAGATTTGTGTTTTACCCTTTTG--------------------------------GCTA----AGTTTTTGG----TTTTATATAAGAGCTCCA--AAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA---TTTAACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGTTT------GTGATTTAAATA-------C------------------------------------------------------------------------------------A
dm3	chr3L:18853979-18854213 +	dme-mir-315	Known_mirbase	TAAC---------ATTCAAATG-------G---------------------------------------------------------------------------------------TCAGTGCAT-------------------TG--TGATGCCCAAAATTGTGTT--AAGCCATTG--------------------------------GCTA----AGTT--TGGCT-GTTTTATATAAGAGTTCCT--TCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG---TTTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTG--------------------------------------ACGATTTCAAAGCACTTCGTTTTGGTAAGTT-----------------------------AAGATTTATTTCA
droSim2	3l:18475590-18475790 +	dsi-mir-315	Known_mirbase	TAAC---------ATTCAAATG-------G---------------------------------------------------------------------------------------CCAGTGCAT-------------------TG--TGTTGCCCAAAATTGTGTT--AAGCCTTTG--------------------------------GCTA----AGTT--TGGCTGTTTTTATATAAGAGTTCCT--TCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---TTTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTG--------------------------------------AAGATTTTA----------------------------------------------------------------
droSec2	scaffold_19:820150-820355 +	dse-mir-315	Known_mirbase	TAAC---------ATTCAAATG-------G---------------------------------------------------------------------------------------CCAGTGCAT-------------------TG--TGTTGCCCAAAATTTTGTT--AAGCCTTTG--------------------------------GCTA----AGTT--TGGCT-GTTTTATATAAGAGTTCCT--TCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-----TACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTG--------------------------------------AAGATTTGAAA-------------------G-----------------------------CA--------CTT
droYak3	v2_chr3L_random_055:2805-2993 +	dya-mir-315-2	Known_mirbase	TAGA---------ATTCCAACA-------G---------------------------------------------------------------------------------------CTAGTGCAT-------------------TG--TGATTCCCAAAATAGTGTT--AACCCTTTG--------------------------------GCTA----AGTT--TGGTT-TTTTTATATAAGAGTTCC---GCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA---TTTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATT----------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4784:18670521-18670712 +	der-mir-315	Known_mirbase	AG------------TTCCAAAA-------G---------------------------------------------------------------------------------------CTAGTGCAT-------------------TG--TGATTCCCCAAATTGTGTT--AACCCTTTG--------------------------------GCTA----AGTT--TGGTT-GTTTTATATAAGAGTTCCT--ACACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA---TCTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTG--------------------------------------AAGA--------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TACA---------AAACAAACG-------A-----------------------------------------------------------------------------------------------T-------------------TG--TAAAAT-AAAA---ATAAT--AACCGT-CA--------------------------------GC------------------------------------C--AAACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAATTTAACTTA--ACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTT-----GTCAA----AAA-------TT-TCAAAAAAAT------------------------TAAAATA-----------------------------CA--------AAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	394773.00	394773	238	11250	1495	3434	378156	200
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	24432.00	24432	103	2498	294	724	20743	70
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	2114.00	2114	2	201	35	63	1802	11
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	2096.00	2096	1	40	4	8	2043	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1779.00	1779	64	231	354	755	337	38
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	1462.00	1462	19	23	3	8	1407	2
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGTAATAATCGAAACC.......................................................................................................................................	22	1	1123.00	1123	4	1	0	1	1117	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	347.00	347	1	33	13	37	254	9
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	291.00	291	5	5	0	2	279	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	220.00	220	21	8	60	109	16	6
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	201.00	201	3	47	11	23	114	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	174.00	174	0	4	0	1	169	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	111.00	111	0	4	1	1	105	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	102.00	102	0	30	9	31	31	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	100.00	100	1	4	9	22	61	3
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	95.00	95	11	6	0	1	77	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	84.00	84	8	3	20	47	5	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	80.00	80	0	3	33	38	6	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	53.00	53	0	4	2	4	43	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	49.00	49	2	8	8	22	8	1
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	48.00	48	0	1	0	0	47	0
............................................................................................................................................................................................................................................................................................................................TTTCGAGTAATAATCGAAACC.......................................................................................................................................	21	1	26.00	26	0	0	0	0	26	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	21.00	21	2	0	0	0	19	0
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	21.00	21	0	3	0	1	17	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	17.00	17	1	0	0	0	16	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGTAATAATCGAAAC........................................................................................................................................	21	1	12.00	12	0	0	1	0	11	0
...................................................................................................................................................................................................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	11.00	11	1	1	1	0	8	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	10.00	10	0	7	0	0	3	0
.....................................................................................................................................................................................................................................................................................................CGTAATTTAACTTA--ACATGG.............................................................................................................................................................	20	1	9.00	9	0	0	0	0	9	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	8.00	8	6	0	0	2	0	0

droVir3

TACA----------GTAAAATGCCAAATAATCAAACAAAC------------------------AAGTGCA-AGTGCCAAACATTTT--------------------------CCAAGTTA--------------------------------------------------------------CAACTCCATTTCCTTCCTACCT-----------------------------------------CACA--AAACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA---TTCAATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACGTTT---------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	75030.00	75030	319	20554	36	35016	2	0	15	0	0	0	0	0	0	0	193	130	89	176	103	71	5	99	340	5	3	2	11	18	6	6	0	10	0	0	0	0	0	4	1	2	6	16	18	0	0	6	8	19	40	343	615	934	638	919	716	186	155	63	3935	3095	1915	22	0	1	4	136	128	203	494	763	298	343	394	455	129	177	216	206	218
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	7885.00	7885	44	3094	8	1856	1	2	8	0	0	0	0	0	0	0	54	50	25	57	36	16	0	20	74	1	2	0	3	3	1	2	1	1	0	0	0	0	0	2	0	1	1	3	1	0	0	0	0	1	0	11	18	36	18	44	37	19	15	6	320	742	682	5	0	0	1	18	12	16	66	118	49	32	75	49	2	22	19	43	42
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	5009.00	5009	10	1442	0	230	0	0	2	0	0	0	0	0	0	0	2	2	0	3	2	2	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	5	8	11	0	1	0	2	4	3	47	107	191	150	245	227	67	68	37	1872	88	40	0	0	0	0	3	5	14	15	26	4	13	7	25	2	8	1	6	4
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1758.00	1758	18	725	3	72	1	2	5	1	0	0	0	0	0	0	46	27	17	35	19	5	1	13	44	0	1	1	1	5	3	0	0	3	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	1	1	1	8	82	499	3	0	0	0	1	1	3	14	23	4	12	10	16	0	3	2	9	9
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	450.00	450	2	170	2	3	0	0	1	0	0	0	0	0	0	0	24	23	13	25	11	8	0	14	33	0	1	1	0	1	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	4	98	0	0	0	0	1	0	0	0	2	2	0	0	0	1	0	1	0	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	267.00	267	0	147	0	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	4	5	7	2	1	0	0	13	5	3	0	0	0	0	0	0	1	2	1	0	0	0	0	2	0	1	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	198.00	198	4	181	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	164.00	164	1	98	0	21	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	9	3	17	0	0	0	0	1	0	0	3	1	0	0	2	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	150.00	150	1	73	1	2	0	0	0	0	0	0	0	0	0	0	6	4	2	1	0	0	0	0	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	45	0	0	0	0	0	0	0	2	0	4	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	126.00	126	0	49	0	10	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	4	28	15	0	0	0	0	0	0	0	2	1	2	2	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	114.00	114	0	24	3	62	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	3	6	5	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	100.00	100	0	41	0	4	0	0	0	0	0	0	0	0	0	0	1	2	1	1	1	1	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	2	12	24	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	79.00	79	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	1	33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	61.00	61	1	13	0	6	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	54.00	54	0	37	0	1	0	0	0	0	0	0	0	0	0	0	4	1	1	1	1	1	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	1	34.00	34	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	33.00	33	1	6	0	21	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGTAATAATCGAAACC.......................................................................................................................................	22	1	32.00	32	0	1	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	18.00	18	0	3	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	16.00	16	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	12.00	12	0	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	9.00	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	6.00	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	4.00	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	4.00	4	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAAA....................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CTCA----------G-CAAACA-------GTTGCAAAAAGAAATATAATACAATGAACAATCAAGAGT---------------------------------------------TCAAG--------------------------------------------TGCTAT--AA-TTTATGGTTACTAGTGTGTTCTCCTGATGCCTGAAACAGC-------------------------------CAACTA--CTATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA---CTTGACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCCTAACTACAATTA-----CTCAA----ACATT--AAC--C----CACATG------------------------------------------------------------CT--------CAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	21.00	21	8	13
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	4.00	4	1	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	2.00	2	1	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	1.00	1	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1.00	1	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	1.00	1	0	1

droWil2

GTGA---------AACTAAATG-------T---------T------------------------AAGTGTAAAGTGTTAATGGTCCTTTAGCATCATCATTTGGTAAACTGAA--TGTTTGTGAAT----------------------------------------------------------------------------------------T----GGTT--TGCTT-ATT-----T------GCCC--ATCTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA--CTTTATCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCAACAGTTT------TCAA----CCATAGAAA----TCCAACTATT-----TTGA-------------------AAC-----------------------------GA--------AAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	312741.00	312741	225435	267	140	56517	30382
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	56057.00	56057	28938	54	26	13896	13143
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	15687.00	15687	8707	23	23	2588	4346
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	9781.00	9781	8409	5	3	595	769
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	4089.00	4089	3452	5	0	400	232
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	1774.00	1774	1295	2	0	110	367
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	1077.00	1077	1025	0	0	8	44
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	801.00	801	312	0	2	186	301
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	590.00	590	324	2	0	140	124
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	520.00	520	418	0	0	19	83
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	479.00	479	341	0	0	63	75
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	353.00	353	98	0	0	49	206
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	352.00	352	164	17	1	84	86
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC.......................................................................................................................................	22	1	310.00	310	128	5	1	139	37
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	215.00	215	211	0	0	2	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	215.00	215	196	0	0	2	17
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	149.00	149	80	1	0	32	36
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	114.00	114	25	5	0	29	55
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	48.00	48	20	0	0	12	16
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	47.00	47	13	0	0	8	26
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	2	45.50	91	91	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	43.00	43	4	1	1	5	32
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	43.00	43	32	0	0	1	10
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	40.00	40	29	0	0	6	5
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	33.00	33	28	0	0	2	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	22.00	22	18	0	0	3	1
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	21.00	21	12	0	0	2	7
...................................................................................................................................................................................................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	20.00	20	16	0	0	2	2
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	18.00	18	3	0	0	4	11
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	12.00	12	2	1	0	1	8
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	11.00	11	2	0	0	8	1
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	11.00	11	7	0	0	3	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	10.00	10	5	0	0	4	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	10.00	10	5	0	1	0	4
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	8.00	8	4	0	0	0	4
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	8.00	8	6	0	0	1	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	2	8.00	16	0	0	0	7	9
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	8.00	8	6	0	0	0	2
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	22	1	7.00	7	5	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	7.00	7	1	0	0	1	5
............................................................................................................................................................................................................................................................................AATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	25	1	7.00	7	0	0	0	5	2
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	7.00	7	1	0	0	0	6
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	19	1	6.00	6	2	0	0	2	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	6.00	6	4	0	0	1	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	6.00	6	1	0	0	1	4
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC........................................................................................................................................	21	1	6.00	6	1	0	0	3	2
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	18	1	5.00	5	1	0	0	0	4
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCA.................................................................................................................................................................................	25	1	5.00	5	3	0	0	2	0
.....................................................................................................................................................................................................................................................................................................CTCATTA--CTTTATCAGTTGG.............................................................................................................................................................	20	1	5.00	5	0	0	0	5	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	22	1	4.00	4	3	0	0	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCC.................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	4.00	4	0	0	0	4	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	4.00	4	1	0	0	1	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGC........................................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	22	1	4.00	4	2	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	7	3.86	27	26	0	0	0	1
............................................................................................................................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC.......................................................................................................................................	21	1	3.00	3	0	0	0	2	1

dp5

TCCA----------TT-------------------------------------------------------------------------------------------------CCAAGTTGTGCATTTTTTTGTGTGAATTCAATTGTG-AA---------------------------------------------------AG--------------------------------TATA-----------AGCCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA---TTAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT--AGTGTGAA----ATA-------CT-TGACTCAAAG------------------------GTAAGTG-----------------------------AA--------AAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	80302.00	80302	23	584	51781	4356	6602	1793	21	3	8	15131
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	16662.00	16662	5	142	2647	491	1872	663	6	5	4	10827
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1512.00	1512	1	40	47	16	203	397	12	0	2	794
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	488.00	488	1	5	116	18	70	28	0	0	0	250
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGCC.......................................................................................................................................	22	1	364.00	364	0	3	301	20	32	8	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	222.00	222	0	9	3	4	12	48	1	0	0	145
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	206.00	206	0	62	73	11	7	3	0	0	0	50
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	184.00	184	0	1	55	6	19	1	0	0	0	102
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	140.00	140	0	6	27	0	30	15	0	2	0	60
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	130.00	130	0	1	6	4	30	18	0	0	0	71
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	117.00	117	0	2	101	3	4	0	0	0	0	7
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	112.00	112	0	0	79	8	5	4	0	0	0	16
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	84.00	84	1	0	30	9	16	7	0	0	0	21
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	79.00	79	2	3	1	2	1	25	0	0	0	45
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	48.00	48	0	1	8	3	8	13	4	0	0	11
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	43.00	43	0	10	1	1	0	1	0	0	0	30
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	40.00	40	1	0	0	0	1	8	0	0	0	30
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	37.00	37	0	0	28	1	5	2	0	0	0	1
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	36.00	36	0	2	16	3	2	0	0	1	0	12
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	23.00	23	0	1	0	3	6	8	1	0	0	4
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGC........................................................................................................................................	21	1	15.00	15	0	0	8	3	2	2	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	13.00	13	0	0	0	1	2	0	0	0	0	10
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	7.00	7	0	1	1	0	0	2	0	0	0	3
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	7.00	7	0	0	1	1	0	1	0	0	0	4
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	22	1	6.00	6	0	2	0	0	1	0	0	0	0	3
............................................................................................................................................................................................................................................................................................................................TTTCGAGCAATTATCAAAGCC.......................................................................................................................................	21	1	5.00	5	0	2	2	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	5
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	5	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	5.00	5	0	3	0	0	0	1	0	0	0	1
............................................................................................................................................................................................................................................................................ATTTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	4
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	4
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	4
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	2	0	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGTA...................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	1	0	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	1	0	0	0	0	2
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	3.00	3	0	0	1	0	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAG.........................................................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	3

droPer2

TCCA----------TT-------------------------------------------------------------------------------------------------CCAAGTTGTGCATTTTTTTGTGTGAATTCCATTGTG-AA---------------------------------------------------AG--------------------------------TAT---------A--AACCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA---TTAACCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT--AGTGTGAA----ATA-------C-------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	43819.00	43819	38612	51	1437	1830	1836	53
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	6166.00	6166	4525	15	436	664	507	19
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1577.00	1577	661	8	51	427	410	20
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	1055.00	1055	945	0	10	42	55	3
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	169.00	169	162	0	4	3	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	163.00	163	155	0	2	2	4	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	132.00	132	48	1	2	45	36	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	104.00	104	34	1	5	31	32	1
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	82.00	82	80	0	0	0	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	78.00	78	42	0	5	16	15	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	68.00	68	14	0	7	20	27	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	68.00	68	12	0	1	21	34	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	66.00	66	19	0	2	17	28	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	38.00	38	25	7	2	3	1	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	36.00	36	1	0	2	20	13	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGCC.......................................................................................................................................	22	1	32.00	32	6	3	9	8	6	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	26.00	26	25	0	0	0	1	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	25.00	25	4	0	1	14	6	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	14.00	14	12	1	0	1	0	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	12.00	12	12	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	22	1	9.00	9	8	0	0	1	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	7.00	7	4	0	0	3	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	7.00	7	2	1	0	3	1	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	6.00	6	1	0	0	3	1	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	5.00	5	2	0	1	0	2	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	5.00	5	3	0	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	5.00	5	0	0	0	2	3	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	4.00	4	3	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGC........................................................................................................................................	21	1	4.00	4	0	0	0	1	3	0
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	21	1	3.00	3	2	0	0	0	1	0
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	3.00	3	0	0	0	2	1	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	3.00	3	2	0	0	0	1	0
.............................................................................................................................................................................................................................................................................TTTTTGATTGTTGCTCAGA........................................................................................................................................................................................	19	1	3.00	3	1	0	0	0	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	1	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................ATTTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	2	1.50	3	0	0	1	2	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	3	1.33	4	1	0	0	0	3	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................ATTTTTGATTGTTGCTCAGA........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droAna3

AATA---------AAAC----CCTAAATAGTCTTAAAAAGAATTC--------------------------------------------------------------------TTAACTC------------------------TTGTG-AAAACTC----TTGCAAT--AA-TCTTTG--------------------------------GCTGTAATAGTT--TGGCT-TTTTTATATAAGAGCTCCT--AAATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA---ATTATTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACATTTT-AAGTGTGAA----ATA-------TT---------------------------------------------------------------------------------CTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	14944.00	14944	59	5369	476	1980	136	6924
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	7154.00	7154	27	458	207	894	58	5510
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	1857.00	1857	15	20	17	568	38	1199
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	492.00	492	2	16	12	42	3	417
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	245.00	245	0	0	3	37	3	202
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC.......................................................................................................................................	22	1	244.00	244	13	178	0	23	2	28
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	186.00	186	0	1	0	38	6	141
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	179.00	179	5	1	3	54	4	112
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	127.00	127	0	1	0	40	9	77
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	91.00	91	0	0	0	56	0	35
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	84.00	84	1	3	0	22	1	57
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	68.00	68	0	4	3	16	1	44
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	64.00	64	5	19	0	0	0	40
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	37.00	37	0	0	0	9	0	28
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	29.00	29	1	2	0	2	0	24
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	18.00	18	0	0	0	2	0	16
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	0	16
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	16.00	16	0	5	0	0	0	11
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	12.00	12	0	1	0	0	0	11
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	11.00	11	2	0	0	1	0	8
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	10.00	10	0	7	0	1	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	9.00	9	0	0	0	2	1	6
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC........................................................................................................................................	21	1	9.00	9	0	3	0	2	3	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	9.00	9	0	0	0	1	0	8
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	8
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	8.00	8	0	1	0	1	0	6
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	5.00	5	0	0	0	2	0	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	5.00	5	0	0	0	1	0	4
............................................................................................................................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC.......................................................................................................................................	21	1	5.00	5	0	4	0	1	0	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	4.00	4	0	2	0	0	0	2
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	4.00	4	0	2	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAACT.....................................................................................................................................................................................	21	1	4.00	4	0	0	0	3	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	4.00	4	0	0	0	1	0	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	2	3.00	6	0	0	0	4	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	3	2.67	8	0	0	0	4	0	4
....................................................................................................................................................................................................................................................................................TTGTTGCTCAGAAAGC....................................................................................................................................................................................	16	1	2.00	2	0	0	0	2	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGA...........................................................................................................................................	18	1	2.00	2	0	0	0	1	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAAA....................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1

droBip1

TCCT------------AAAATA-------GCCCACATAAGAAATC--------------------------------------------------------------------TTAACTTGTGCCT------------------TTGTG-AAAACTTAAAATTGTAAT--AAT-CTTTG--------------------------------GCTGAAATTGGT--TGGCT-TTTTTATATAAGAGATCCT--AAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAT---ATTTAAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACATTTT-AATTGTGAA----AAA-------TA-ACTAGAAAGG------------------------GTAAGCA-----------------------------TA--------TAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATAATAAGTAAATCCCCT----------------------------------------------------------------------------------------------CCAACTTGTG----------------------TG--TAAATCTCAAAAGTGTAAC--AATCCTTTG--------------------------------GCTA----AATTTTTGG----TTTTATATAAGAGTTCCTGGAAATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TA---TTTATCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTATGAAGTGTGATTTAGT------------TG-TTAAAGG------------------------GTAAGTGTTTTCTAAAATAATGTTTATTTGTTAATATA--------AGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATC---------CTC-------------------------------------------------------------------------------------------------CCATCTTGTGCTT-------------------TG--TGATTCTGAAAATAGTGT---AACCCTTTG--------------------------------GCTAA---AGTT--TGGTT-CTTTTATATAAGAGCTCCT--GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA---CTTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACA---------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-------------------------------------------------------------------------------------------------------------------------------------------------G--TGATTCTCAAAATTGTGTT--AACCCTTTG--------------------------------GCTA----AGTT--TGGTT-GTTTTATATAAGAGTTCCTG-GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA---TTTAACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGAAT------GTGATTTAATTA-------G-------------------------ACTTCAAAATGGTAAGTG-----------------------------AACACT----GAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCC---------------------------------------------------------------------------------------------------------------CAACTTGTGCAT-------------------TG--TGACTTACAAAATTGTGTT--TACCTTTTG--------------------------------GCTA----AGTT--TGGTT-GTTTTATATAAGAGTTTCT--GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATA---TTT-ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGTTTT-----GTGATTTAAA-----------C----GAGATG------------------------GTAAGTG-----------------------------AA---------CA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAGA-----------CCAA----------------------------------------------------------------------------------------------CCAACTTGTGCAT-------------------TG--TGCCTCCCA-AATTGTGTT--ACCCTTTTG--------------------------------GCTA----AGTTT-CGG-----CTTATATAAGAGCTCCT--CAGCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA---TTTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTT---------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACA----------TCCAAATA-------GC--------------------------------------------------------------------------------------TTTGTGCAT-------------------AG--TGATTTTCAAAATTGTGTT--AACCTTTTG--------------------------------GCTA----AGTT--TGGTT-ACTTTATATAAGAGCTCCT--GAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA---CTTAACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGATT------GTTAGTTAATTG-------C---GTCT-T---AA---------------------------------------------------------------------GA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AATA----------------------------------------------------------------------------------------------------------------ACTT--TTAT-------------------TG--TGATTCCCAGATTTGTGTTTTACCCTTTTG--------------------------------GCTA----AGTTTTTGG----TTTTATATAAGAGCTCCA--AAACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA---TTTAACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGTTT------GTGATTTAAATA-------C------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAAC---------ATTCAAATG-------G---------------------------------------------------------------------------------------TCAGTGCAT-------------------TG--TGATGCCCAAAATTGTGTT--AAGCCATTG--------------------------------GCTA----AGTT--TGGCT-GTTTTATATAAGAGTTCCT--TCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG---TTTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTG--------------------------------------ACGATTTCAAAGCACTTCGTTTTGGTAAGTT-----------------------------AAGATTTATTTCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	106956.00	106956	0	0	0	0	31	0	0	0	29	44	13	134	10	0	3	1	1	2	14	0	0	0	0	2	0	5	4	48	43	152	763	837	5	8	0	0	0	0	0	0	1	0	3	0	1	2	0	0	3	1	1	2	1	0	0	0	4	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	6	4	7	16	7	2	449	346	3	0	0	13	14	58	57	0	345	72	2	6	33	63	112	295	724	1	2	0	11	5	5	5	2	423	146	181	0	14	38	431	650	7	537	7	430	488	2037	27	323	53	517	312	0	0	0	0	0	0	0	0	0	0	53	17	181	173	31	1	0	0	0	0	2	0	0	0	0	2	0	1	1	0	2	0	3	0	0	0	1425	1783	0	1476	121	55	1245	936	173	797	48	1551	547	2686	308	0	0	0	0	0	2440	73	16	54	11	0	0	0	47	1	79	4	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	22	0	28	1	3	97	3624	0	6	2	109	3	0	0	0	0	1	0	0	5486	3895	2	154	1758	64	1223	12	11	503	1806	17	289	38	134	3	8	24	2636	16	4	6	16	46	21	18	79	24	42	12	40	10	3	0	24	83	2	6	2	4	0	2	3	22	7	6	42	3514	5024	3939	4696	996	28518	296	129	21	5	1	8	1	3	634	20	530	753	3	26	0	9	5	71	956	103	2	8	20	16	37	11	34	2	5	5482	15	72	332	99	9	72	33	48	44	42	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	28689.00	28689	0	0	0	0	12	0	0	0	0	14	4	22	3	0	1	0	0	0	4	0	0	0	0	2	0	1	1	6	15	29	314	344	6	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	6	4	2	8	0	0	11	18	0	0	0	1	0	6	14	0	56	26	2	1	8	9	24	45	235	0	0	0	3	0	0	0	0	80	7	15	0	4	12	147	301	1	280	0	152	214	852	14	123	21	167	152	0	0	0	0	0	0	0	0	0	0	10	4	22	11	0	0	0	0	1	0	2	0	0	0	0	2	0	0	1	0	5	0	0	0	0	0	538	608	0	501	18	9	367	380	34	342	17	552	101	1151	102	0	0	0	1	0	727	11	5	17	1	0	0	0	6	1	9	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	10	2	6	1	3	32	1255	0	4	2	30	1	0	0	0	0	2	0	0	572	426	0	48	671	35	485	5	0	265	773	5	124	17	53	1	5	9	1243	3	1	1	4	9	15	3	35	5	8	3	5	2	1	0	4	13	3	0	0	0	1	2	2	6	0	0	7	1107	1652	1219	1407	48	3364	80	26	6	0	2	2	0	0	163	3	138	236	0	7	0	0	1	29	345	42	0	1	8	7	14	2	12	0	1	2893	12	32	102	13	2	30	21	34	18	16	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	15419.00	15419	0	0	0	0	11	0	0	0	0	4	1	17	2	0	1	0	0	3	2	0	0	0	0	5	0	1	1	4	2	15	269	253	3	0	8	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	8	1	0	1	4	0	0	0	2	1	4	15	0	40	65	1	1	6	7	20	25	239	0	0	0	5	0	0	0	1	32	2	7	0	0	0	95	14	2	24	0	42	19	42	0	88	8	118	81	0	0	0	0	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0	0	2	0	0	0	0	1	0	2	3	0	0	0	0	0	0	0	334	409	0	297	3	4	172	283	16	293	2	427	16	891	35	0	0	0	0	0	402	34	3	40	0	0	0	0	14	0	22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	10	1	14	0	4	13	479	0	0	0	9	2	0	0	0	0	0	0	0	247	196	0	25	363	14	78	1	2	92	217	0	57	2	9	0	2	2	310	3	0	0	3	2	5	0	16	3	2	4	2	4	0	0	1	12	0	4	0	3	0	2	0	5	0	1	8	973	1338	892	1301	11	980	55	32	0	3	0	1	0	3	207	3	117	177	0	8	0	2	2	7	144	16	0	1	4	4	7	0	7	0	0	1464	14	9	29	3	1	6	6	6	8	4	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC.......................................................................................................................................	22	1	6674.00	6674	0	0	0	0	4	0	0	0	0	0	0	6	0	0	0	1	1	0	0	0	0	0	0	0	1	1	0	152	53	588	13	35	13	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	4	0	9	1	1	58	33	0	0	0	5	0	3	24	0	34	44	1	4	0	2	4	9	113	0	0	0	1	0	0	0	0	3	15	3	0	0	0	23	0	1	1	0	2	0	1	0	4	1	6	1	0	0	0	0	0	0	0	0	0	0	6	1	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	7	0	4	0	0	0	201	360	0	194	346	167	5	44	641	13	58	264	1803	69	223	19	1	0	0	0	13	5	0	16	1	0	0	0	4	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	2	0	0	2	20	0	0	0	1	0	0	0	0	0	0	0	0	79	52	0	1	5	0	4	0	0	2	8	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	3	1	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	2	81	104	101	110	32	101	9	0	1	0	0	0	0	0	8	0	4	4	0	1	0	0	0	1	7	2	0	0	0	3	0	0	0	0	0	137	0	1	1	0	0	2	0	0	0	1	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	3528.00	3528	0	0	0	0	4	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	6	153	156	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	2	5	1	17	18	0	1	0	0	4	5	78	0	0	0	1	0	0	0	0	6	0	0	0	0	1	56	4	1	4	0	9	5	11	0	55	4	58	62	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	228	268	0	147	1	1	87	187	8	164	1	224	0	532	12	0	0	0	0	0	222	2	1	3	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	41	0	0	0	0	0	0	0	1	0	0	0	0	18	16	0	5	51	1	9	0	0	5	23	0	4	0	1	0	0	0	25	0	0	0	1	0	0	0	4	1	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	54	83	55	140	1	16	1	1	0	0	0	0	0	0	16	2	7	14	1	0	0	1	0	0	6	1	0	0	0	0	0	0	1	0	0	65	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCATC.................................................................................................................................................................................	25	1	3075.00	3075	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2210	865	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	1079.00	1079	0	0	0	0	1	0	0	0	2	3	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	0	0	0	0	0	1	2	1	0	9	2	0	0	0	1	4	4	4	0	0	0	1	0	0	0	1	13	0	2	0	0	1	1	13	0	11	0	3	2	10	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	7	0	6	1	0	9	6	2	3	2	7	1	25	1	0	0	0	0	0	8	8	0	2	0	0	0	0	2	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	22	0	0	0	0	0	0	0	0	0	0	0	0	45	44	0	1	9	0	17	0	0	11	16	3	2	2	6	0	0	0	27	1	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	27	19	21	4	306	0	0	0	0	0	0	0	0	11	0	4	8	0	1	0	1	0	2	30	4	0	1	2	0	4	0	1	0	1	143	3	4	8	7	0	6	2	1	2	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	943.00	943	0	0	0	0	1	1	0	0	0	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	2	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	5	9	0	19	0	13	4	36	0	6	0	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	20	0	14	1	0	13	17	1	9	0	22	1	29	1	0	0	0	0	0	32	1	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	33	0	0	0	0	0	0	0	0	16	8	0	0	20	15	0	1	20	1	8	0	0	9	15	0	7	0	7	0	0	1	36	0	0	0	0	1	0	0	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	48	69	61	67	0	35	5	3	0	0	1	0	0	0	7	0	7	12	0	0	0	0	0	0	15	1	1	0	0	0	2	0	0	0	0	107	0	0	0	0	0	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	817.00	817	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	1	12	0	0	0	0	0	0	0	0	1	0	1	0	0	0	3	3	0	1	0	1	1	5	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	5	0	1	0	0	8	8	0	5	0	8	0	10	0	0	0	0	0	0	9	3	1	4	0	0	0	0	4	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	224	0	0	0	2	0	0	0	0	4	7	0	0	22	13	0	1	9	0	7	0	0	4	7	0	2	1	2	0	0	0	8	1	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	33	34	33	4	133	2	1	0	0	1	1	0	0	7	1	12	6	0	2	0	0	0	1	9	0	0	0	1	1	0	0	0	0	0	50	1	1	2	0	0	0	0	0	1	0	0
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...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	3	0	0	0	6	0	6	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	1	0	1	0	4	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAC......................................................................................................................................................................................	20	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	3	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCATC.................................................................................................................................................................................	24	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSim2

TAAC---------ATTCAAATG-------G---------------------------------------------------------------------------------------CCAGTGCAT-------------------TG--TGTTGCCCAAAATTGTGTT--AAGCCTTTG--------------------------------GCTA----AGTT--TGGCTGTTTTTATATAAGAGTTCCT--TCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---TTTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTG--------------------------------------AAGATTTTA----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	479570.00	479570	180667	743	284447	83	0	40	864	81	2095	1826	23	8652	1	1	11	1	35
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	59709.00	59709	31932	134	23672	16	1	24	348	41	834	477	10	2182	3	0	7	2	26
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	12280.00	12280	8981	33	2530	7	0	9	93	12	236	115	11	229	0	1	3	1	19
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	11972.00	11972	5477	26	6314	1	0	0	2	1	1	10	0	140	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	1845.00	1845	1514	4	175	1	4	63	6	0	34	27	0	16	0	0	0	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	1134.00	1134	398	1	587	0	8	135	1	0	0	1	0	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	1064.00	1064	973	5	42	0	0	31	1	1	6	3	0	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	907.00	907	222	0	233	3	0	0	229	28	137	20	12	22	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC.......................................................................................................................................	22	1	851.00	851	232	0	205	2	12	386	0	0	0	0	1	13	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	828.00	828	433	1	297	0	0	0	33	2	26	10	0	26	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	656.00	656	503	1	129	0	0	0	0	0	1	2	0	20	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	570.00	570	488	2	29	1	1	25	0	1	15	6	0	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	420.00	420	403	3	11	0	0	0	1	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	405.00	405	147	0	232	12	0	0	0	0	1	2	0	11	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	354.00	354	136	0	217	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	186.00	186	146	0	15	0	0	0	11	1	5	2	2	4	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	174.00	174	94	0	78	1	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGA...........................................................................................................................................	18	1	167.00	167	1	0	0	0	4	161	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAA..........................................................................................................................................	19	1	141.00	141	0	0	0	0	4	137	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	1	140.00	140	136	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	84.00	84	56	0	24	0	0	1	0	0	0	1	0	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	78.00	78	40	0	34	0	0	0	0	0	1	0	0	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	75.00	75	59	0	5	0	0	0	1	0	1	0	0	9	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	69.00	69	26	0	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAA.........................................................................................................................................	20	1	64.00	64	0	0	0	0	2	62	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	2	44.00	88	86	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	42.00	42	41	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	38.00	38	32	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	35.00	35	11	0	23	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	33.00	33	17	0	14	0	0	0	0	0	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCAA.................................................................................................................................................................................	25	1	31.00	31	0	0	0	0	0	0	13	2	15	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	28.00	28	17	2	3	0	0	0	0	0	1	0	0	5	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	18.00	18	2	1	14	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	17.00	17	14	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	14.00	14	13	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	14.00	14	13	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	12.00	12	2	0	1	0	0	0	4	0	1	0	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCAAA................................................................................................................................................................................	26	1	11.00	11	0	0	0	0	0	0	5	0	5	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	11.00	11	4	0	4	0	0	0	0	0	0	1	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	10.00	10	6	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC........................................................................................................................................	21	1	10.00	10	2	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGC........................................................................................................................................................................................	18	1	10.00	10	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	10.00	10	2	0	4	0	0	0	0	0	2	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGATT......................................................................................................................................................................................	20	2	7.50	15	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAG.........................................................................................................................................................................................	17	1	7.00	7	0	0	0	0	0	0	1	0	1	2	0	0	0	0	1	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAAA.................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	1	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAC......................................................................................................................................................................................	20	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGACT......................................................................................................................................................................................	20	2	6.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	2	6.00	12	5	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTTATTG---TTTACCAGTTGG.............................................................................................................................................................	19	1	5.00	5	0	0	2	0	0	0	0	0	0	1	0	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	22	1	5.00	5	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	23	1	5.00	5	3	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	5.00	5	4	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT.................................................................................................................................................................................	25	1	5.00	5	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAATT.....................................................................................................................................................................................	21	2	4.50	9	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	4.00	4	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATT.............................................................................................................................................	16	1	4.00	4	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACCA......................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGATC......................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	19	1	3.00	3	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	21	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TAAC---------ATTCAAATG-------G---------------------------------------------------------------------------------------CCAGTGCAT-------------------TG--TGTTGCCCAAAATTTTGTT--AAGCCTTTG--------------------------------GCTA----AGTT--TGGCT-GTTTTATATAAGAGTTCCT--TCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-----TACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTG--------------------------------------AAGATTTGAAA-------------------G-----------------------------CA--------CTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	53466.00	53466	113	183	38375	14795
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	13083.00	13083	33	75	7285	5690
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	3628.00	3628	9	58	1053	2508
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	907.00	907	2	5	634	266
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	334.00	334	10	2	287	35
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	290.00	290	3	1	66	220
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	262.00	262	5	0	37	220
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	167.00	167	0	1	109	57
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC.......................................................................................................................................	22	1	165.00	165	14	2	86	63
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	164.00	164	0	3	15	146
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	137.00	137	0	3	71	63
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	118.00	118	1	0	10	107
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	115.00	115	0	0	14	101
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	85.00	85	2	0	72	11
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	61.00	61	0	2	12	47
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	45.00	45	0	0	37	8
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	37.00	37	0	1	23	13
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	16.00	16	1	0	12	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	15.00	15	1	1	1	12
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	2	10.50	21	0	0	19	2
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	10.00	10	1	0	7	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	8.00	8	0	0	3	5
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	7.00	7	0	0	2	5
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	7.00	7	0	0	6	1
............................................................................................................................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC.......................................................................................................................................	21	1	7.00	7	0	1	3	3
............................................................................................................................................................................................................................................................................AATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	25	1	5.00	5	0	0	3	2
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	4.00	4	0	0	3	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAT......................................................................................................................................................................................	20	1	4.00	4	0	0	0	4
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	4.00	4	0	0	3	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	4.00	4	0	0	1	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	3.00	3	0	0	0	3
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAT.......................................................................................................................................................................................	19	1	3.00	3	0	0	0	3
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	3.00	3	0	0	3	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	1	3.00	3	0	0	3	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC........................................................................................................................................	21	1	3.00	3	0	0	2	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	2	2.50	5	0	0	0	5
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	2.00	2	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	2.00	2	0	0	0	2
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	1	2.00	2	0	0	1	1
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACCA......................................................................................................................................	23	1	2.00	2	1	0	1	0
...................................................................................................................................................................................................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	2.00	2	0	0	0	2
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	18	1	2.00	2	1	0	0	1
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAA..........................................................................................................................................	19	1	2.00	2	0	0	1	1
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGC........................................................................................................................................................................................	18	1	1.00	1	0	0	0	1

droYak3

TAGA---------ATTCCAACA-------G---------------------------------------------------------------------------------------CTAGTGCAT-------------------TG--TGATTCCCAAAATAGTGTT--AACCCTTTG--------------------------------GCTA----AGTT--TGGTT-TTTTTATATAAGAGTTCC---GCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA---TTTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATT----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	2	238056.50	476113	46916	28	418397	7617	714	2369	45	8	1	18	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	2	10712.50	21425	6941	4	12156	1536	193	565	9	0	0	21	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	2	2553.50	5107	2519	3	2344	163	14	61	3	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	2	1304.50	2609	1696	1	206	104	164	427	5	1	2	3	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC.......................................................................................................................................	22	2	1011.00	2022	37	7	1938	14	2	24	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	2	510.50	1021	221	0	789	5	1	5	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	2	459.50	919	40	4	868	6	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	2	192.50	385	104	0	229	21	1	30	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	2	170.00	340	250	1	10	5	19	53	1	1	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	2	119.50	239	8	0	225	2	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	2	110.50	221	109	0	54	20	4	34	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	2	103.00	206	15	0	190	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	2	98.50	197	169	0	1	0	10	17	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	2	89.50	179	100	0	35	17	6	21	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	2	68.50	137	100	2	5	1	10	19	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	2	65.00	130	48	1	46	2	8	24	1	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	2	48.50	97	94	0	1	0	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG..................................................................................................................................................................................	24	2	33.50	67	65	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	2	18.00	36	13	0	20	2	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC.......................................................................................................................................	21	2	16.00	32	0	0	31	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	2	11.00	22	7	0	14	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	2	10.00	20	5	0	4	2	1	8	0	0	0	0	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	2	8.50	17	0	1	15	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	18	2	7.00	14	4	0	10	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	2	6.50	13	0	0	13	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGG........................................................................................................................................................................................	18	3	6.33	19	19	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	23	2	5.00	10	4	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	2	5.00	10	8	0	0	0	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	2	4.00	8	5	0	3	0	0	0	0	0	0	0	0

droEre2

AG------------TTCCAAAA-------G---------------------------------------------------------------------------------------CTAGTGCAT-------------------TG--TGATTCCCCAAATTGTGTT--AACCCTTTG--------------------------------GCTA----AGTT--TGGTT-GTTTTATATAAGAGTTCCT--ACACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA---TCTAACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTG--------------------------------------AAGA--------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	23	1	43176.00	43176	374	21515	1547	4020	89	15631	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	22	1	9235.00	9235	58	976	492	965	14	6730	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	21	1	3617.00	3617	19	23	338	125	25	3087	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA...................................................................................................................................................................................	23	1	562.00	562	2	6	26	13	1	514	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT..................................................................................................................................................................................	24	1	467.00	467	4	91	7	73	4	288	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	20	1	341.00	341	0	2	34	9	3	293	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC.......................................................................................................................................	22	1	309.00	309	14	176	14	4	5	96	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA....................................................................................................................................................................................	22	1	245.00	245	0	2	26	2	3	212	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT...................................................................................................................................................................................	23	1	218.00	218	1	8	4	6	0	199	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGA........................................................................................................................................................................................	18	1	148.00	148	0	0	1	1	0	146	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	22	1	128.00	128	39	29	7	4	2	47	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAA.......................................................................................................................................................................................	19	1	122.00	122	0	1	9	4	0	108	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA..................................................................................................................................................................................	24	1	107.00	107	1	3	15	9	2	77	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG...................................................................................................................................................................................	23	1	95.00	95	0	13	0	1	1	80	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC..................................................................................................................................................................................	24	1	43.00	43	0	31	3	4	0	5	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	21	1	31.00	31	5	2	1	1	0	22	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	21	1	30.00	30	3	13	0	0	0	14	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT....................................................................................................................................................................................	22	1	30.00	30	1	0	1	0	0	28	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT.....................................................................................................................................................................................	21	1	23.00	23	1	1	8	2	0	11	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA.....................................................................................................................................................................................	21	1	20.00	20	0	0	4	0	0	16	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC........................................................................................................................................	21	1	15.00	15	1	1	2	1	1	9	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	20	1	11.00	11	0	0	0	1	0	10	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	20	1	11.00	11	2	0	0	1	0	8	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGA...........................................................................................................................................	18	1	10.00	10	0	0	0	0	0	10	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	24	1	9.00	9	0	5	0	1	0	3	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGT........................................................................................................................................................................................	18	1	8.00	8	0	0	0	0	0	8	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA..................................................................................................................................................................................	24	1	7.00	7	0	0	0	1	0	6	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG....................................................................................................................................................................................	22	1	6.00	6	0	2	0	1	0	3	0
..................................................................................................................................................................................................................................................................................GATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	19	1	6.00	6	1	1	0	1	0	3	0
............................................................................................................................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC.......................................................................................................................................	21	1	6.00	6	0	5	0	0	0	1	0
................................................................................................................................................................................................................................................................................TTGATTGTTGCTCAGAAAG.....................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5	0
.............................................................................................................................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGC....................................................................................................................................................................................	23	1	5.00	5	0	3	0	0	0	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA...................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	5	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAATA....................................................................................................................................................................................	22	1	5.00	5	0	1	0	0	0	4	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAA..........................................................................................................................................	19	1	5.00	5	0	0	1	0	0	4	0
...........................................................................................................................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAA.........................................................................................................................................	20	1	5.00	5	0	0	1	0	1	3	0
.................................................................................................................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	4	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT..................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	4	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT..................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	4	0
...............................................................................................................................................................................................................................................................................TTTGATTGTTGCTCAGAAA......................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC.....................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC.....................................................................................................................................................................................	21	1	3.00	3	0	0	1	0	0	2	0
..............................................................................................................................................................................................................................................................................TTTTGATTGTTGCTCAGAAG......................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3	0
............................................................................................................................................................................................................................................................................AATTTTGATTGTTGCTCAGAAAGCC...................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	0	2	0

dmo-mir-315

scaffold_6680:23648572-23648654 -

Known

Unknown

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.4	-34.3	-33.8