ID:

dmo-mir-309

 Coordinate:

scaffold_6496:20937119-20937193 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.9 -19.2

Flybase annnotation

pre_miRNA [Dmoj\mir-309-RM]; utr3 [utr3_minus_3620]; miRNA [Dmoj\miR-309-RA]

No Repeatable elements found

Sense Strand Reads

TAAGGATCGGAGTGGCACAGTGCATATATATATATATACAAGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCGGGTTCTATGTTGTGCGCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGAAACAGCAAGGAAAAAGTCCAGTCAATTCAACGGAACTCTCGC

*******************************************.......((((((.(((((((((((((((((..(((((............)).)))..))))))))))))))))).))))))...........*************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V110

male body		 V049

head

 V056

head
...................................................................................................TCACTGGGTGAAGTTTGTCGTA...................................................... 22 0 1 16785.00 16785 14421 2349 5 4 3 3
...................................................................................................TCACTGGGTGAAGTTTGTCGT....................................................... 21 0 1 3875.00 3875 3568 291 7 5 2 2
...................................................................................................TCACTGGGTGAAGTTTGTCGTC...................................................... 22 1 1 620.00 620 577 40 2 0 1 0
...................................................................................................TCACTGGGTGAAGTTTGTCGC....................................................... 21 1 1 584.00 584 584 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTAA..................................................... 23 1 1 540.00 540 377 162 0 1 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 521.00 521 521 0 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 359.00 359 359 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTAT..................................................... 23 0 1 347.00 347 327 20 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGTA...................................................... 22 1 1 280.00 280 273 7 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCG........................................................ 20 0 1 153.00 153 122 28 1 0 1 1
...................................................................................................TGACTGGGTGAAGTTTGTCGT....................................................... 21 1 1 140.00 140 139 1 0 0 0 0
...................................................................................................TTACTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 113.00 113 112 1 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTTGTCGTA...................................................... 22 1 1 96.00 96 79 16 0 0 0 1
...................................................................................................TCATTGGGTGAAGTTTGTCGT....................................................... 21 1 1 93.00 93 93 0 0 0 0 0
...................................................................................................TCACTTGGTGAAGTTTGTCGTA...................................................... 22 1 1 79.00 79 79 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTAC..................................................... 23 1 1 77.00 77 76 1 0 0 0 0
...................................................................................................GCACTGGGTGAAGTTTGTCTTA...................................................... 22 2 1 74.00 74 62 12 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGT....................................................... 21 1 1 70.00 70 69 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTT...................................................... 22 1 1 64.00 64 59 5 0 0 0 0
...................................................................................................TCACTGGGGGAAGTTTGTCGTA...................................................... 22 1 1 58.00 58 52 6 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGGA...................................................... 22 1 1 57.00 57 54 3 0 0 0 0
..................................................................................................CTCACTGGGTGAAGTTTGTCGTA...................................................... 23 1 1 55.00 55 52 3 0 0 0 0
...................................................................................................TCCCTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 54.00 54 54 0 0 0 0 0
.....................................................................................................ACTGGGTGAAGTTTGTCGTA...................................................... 20 0 1 48.00 48 18 30 0 0 0 0
...................................................................................................GCACTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 45.00 45 44 1 0 0 0 0
...................................................................................................CCACTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 42.00 42 40 2 0 0 0 0
...................................................................................................TCACTGTGTGAAGTTTGTCGTA...................................................... 22 1 1 37.00 37 37 0 0 0 0 0
..........................................................GTAAACTTTGTTCAGTTTTGCC............................................................................................... 22 0 1 34.00 34 34 0 0 0 0 0
...................................................................................................TCACTGGGAGAAGTTTGTCGTA...................................................... 22 1 1 34.00 34 31 3 0 0 0 0
...................................................................................................ACACTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 31.00 31 29 2 0 0 0 0
...................................................................................................TCACTGGGTGAAGGTTGTCGTA...................................................... 22 1 1 26.00 26 22 4 0 0 0 0
...................................................................................................TTACTGGGTGAAGTTTGTCGT....................................................... 21 1 1 25.00 25 25 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGCCGTA...................................................... 22 1 1 24.00 24 15 9 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTTGTA...................................................... 22 1 1 24.00 24 20 4 0 0 0 0
....................................................................................................CACTGGGTGAAGTTTGTCGTA...................................................... 21 0 1 23.00 23 23 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTTTCGTA...................................................... 22 1 1 22.00 22 21 1 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGC....................................................... 21 2 1 22.00 22 22 0 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTTGTCGT....................................................... 21 1 1 21.00 21 18 3 0 0 0 0
..................................................................................................ATCACTGGGTGAAGTTTGTCGT....................................................... 22 0 1 21.00 21 20 1 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGTC...................................................... 22 2 1 21.00 21 21 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGCTTGTCGTA...................................................... 22 1 1 20.00 20 13 7 0 0 0 0
...................................................................................................TCACTTGGTGAAGTTTGTCGT....................................................... 21 1 1 20.00 20 20 0 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCGC....................................................... 21 2 1 20.00 20 20 0 0 0 0 0
...................................................................................................TCACTGGGTGACGTTTGTCGTA...................................................... 22 1 1 20.00 20 6 14 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGTAA..................................................... 23 2 1 19.00 19 19 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGGCGTA...................................................... 22 1 1 19.00 19 18 1 0 0 0 0
...................................................................................................GCACTGGGTGAAGTTTGTCTT....................................................... 21 2 1 19.00 19 17 2 0 0 0 0
...................................................................................................TCACTGGGTAAAGTTTGTCGTA...................................................... 22 1 1 18.00 18 17 1 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCGTC...................................................... 22 2 1 18.00 18 18 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTAAA.................................................... 24 1 1 17.00 17 8 9 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 16.00 16 13 3 0 0 0 0
...................................................................................................TCATTGGGCGAAGTTTGTCGTA...................................................... 22 2 1 15.00 15 15 0 0 0 0 0
...................................................................................................TCACTAGGTGAAGTTTGTCGTA...................................................... 22 1 1 14.00 14 11 3 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTGGTCGTA...................................................... 22 1 1 13.00 13 13 0 0 0 0 0
...................................................................................................TCACTGGATGAAGTTTGTCGTA...................................................... 22 1 1 13.00 13 10 3 0 0 0 0
...................................................................................................CCACTGGGTGAAGTTTGTCGT....................................................... 21 1 1 13.00 13 13 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCATA...................................................... 22 1 1 12.00 12 10 2 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGC....................................................... 21 2 1 12.00 12 12 0 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGTAT..................................................... 23 1 1 12.00 12 12 0 0 0 0 0
...................................................................................................TCACTGGTTGAAGTTTGTCGTA...................................................... 22 1 1 12.00 12 11 1 0 0 0 0
...................................................................................................TCCCTGGGTGAAGTTTGTCGT....................................................... 21 1 1 11.00 11 11 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGG....................................................... 21 1 1 11.00 11 11 0 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCGTAA..................................................... 23 2 1 11.00 11 11 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTATT.................................................... 24 1 1 11.00 11 11 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGATTGTCGTA...................................................... 22 1 1 11.00 11 11 0 0 0 0 0
..................................................................................................ATCACTGGGTGAAGTTTGTCG........................................................ 21 0 1 10.00 10 8 2 0 0 0 0
...................................................................................................TCACCGGGTGAAGTTTGTCGTA...................................................... 22 1 1 10.00 10 9 1 0 0 0 0
.....................................................................................................ACTGGGTGAAGTTTGTCGT....................................................... 19 0 1 10.00 10 6 4 0 0 0 0
...................................................................................................TCGCTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 10.00 10 7 3 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGCA...................................................... 22 1 1 10.00 10 7 3 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGTC...................................................... 22 2 1 9.00 9 9 0 0 0 0 0
..........................................................GTAAACTTTGTTCAGTTTTGC................................................................................................ 21 0 1 9.00 9 9 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTATC.................................................... 24 1 1 9.00 9 9 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTC......................................................... 19 0 1 9.00 9 8 1 0 0 0 0
...................................................................................................TCACTGTGTGAAGTTTGTCGT....................................................... 21 1 1 9.00 9 9 0 0 0 0 0
..................................................................................................ATCACTGGGTGAAGTTTGTCGC....................................................... 22 1 1 9.00 9 9 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTATCGTA...................................................... 22 1 1 9.00 9 8 1 0 0 0 0
...................................................................................................TCACTGGGTGAGGTTTGTCGTA...................................................... 22 1 1 9.00 9 4 5 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTG...................................................... 22 1 1 8.00 8 4 4 0 0 0 0
...................................................................................................GCACTGGGTGAAGTTTGTCGT....................................................... 21 1 1 8.00 8 8 0 0 0 0 0
...................................................................................................TCACTGGGTGGAGTTTGTCGTA...................................................... 22 1 1 8.00 8 4 4 0 0 0 0
..............................................................................CCGGGTTCTATGTTGTGCGCA............................................................................ 21 0 1 8.00 8 3 5 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTTTCGTC...................................................... 22 2 1 7.00 7 7 0 0 0 0 0
..................................................................................................CGCACTGGGTGAAGTTTGTCGTA...................................................... 23 2 1 7.00 7 7 0 0 0 0 0
...................................................................................................TCACTGAGTGAAGTTTGTCGTA...................................................... 22 1 1 7.00 7 4 3 0 0 0 0
......................................................................................................CTGGGTGAAGTTTGTCGTA...................................................... 19 0 1 7.00 7 7 0 0 0 0 0
...................................................................................................TCACGGGGTGAAGTTTGTCGTA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
...................................................................................................TCACTGGGAGAAGTTTGTCGT....................................................... 21 1 1 7.00 7 6 1 0 0 0 0
...................................................................................................TCACTGGGTGTAGTTTGTCGTA...................................................... 22 1 1 7.00 7 0 7 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGTAA..................................................... 23 2 1 7.00 7 6 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGA....................................................... 21 1 1 7.00 7 7 0 0 0 0 0
.......................................................................................................TGGGTGAAGTTTGTCGTA...................................................... 18 0 1 7.00 7 5 2 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCTT....................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...................................................................................................TCACTGGGGGAAGTTTGTCGT....................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTCTCGTA...................................................... 22 1 1 7.00 7 5 2 0 0 0 0
...................................................................................................TCACTCGGTGAAGTTTGTCGTA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTATA.................................................... 24 0 1 6.00 6 5 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTTTCGT....................................................... 21 1 1 6.00 6 6 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGGCGT....................................................... 21 1 1 6.00 6 5 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTCGTCGTA...................................................... 22 1 1 6.00 6 5 1 0 0 0 0
.................................................................................................TCTCACTGGGTGAAGTTTGTCGTA...................................................... 24 2 1 6.00 6 6 0 0 0 0 0
...................................................................................................TCACTGGCTGAAGTTTGTCGTA...................................................... 22 1 1 6.00 6 5 1 0 0 0 0
...................................................................................................TTACTGGGTGAAGTTTGTCGTC...................................................... 22 2 1 6.00 6 6 0 0 0 0 0
...................................................................................................TCACTGGGTGATGTTTGTCGTA...................................................... 22 1 1 6.00 6 0 6 0 0 0 0
...................................................................................................TCATTGTGTGAAGTTTGTCGTA...................................................... 22 2 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGAC...................................................... 22 2 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTTAAGTTTGTCGTA...................................................... 22 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTTGTCGTC...................................................... 22 2 1 5.00 5 4 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGCTTGTCGT....................................................... 21 1 1 5.00 5 4 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGGTTGTCGT....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TGATTGGGTGAAGTTTGTCGTA...................................................... 22 2 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTCAAGTTTGTCGTA...................................................... 22 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGTT...................................................... 22 2 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTTGT....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TGACTGGGCGAAGTTTGTCGTA...................................................... 22 2 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGACGTA...................................................... 22 1 1 5.00 5 4 1 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCGTAT..................................................... 23 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGCCGT....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................ACACTGGGTGAAGTTTGTCGT....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTTGGTGAAGTTTGTCGC....................................................... 21 2 1 5.00 5 5 0 0 0 0 0
..................................................................................................AGCACTGGGTGAAGTTTGTCGT....................................................... 22 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTAG..................................................... 23 1 1 5.00 5 2 3 0 0 0 0
..............................................................................CCGGGTTCTATGTTGTGCGC............................................................................. 20 0 1 5.00 5 5 0 0 0 0 0
........................................................AGGTAAACTTTGTTCAGTTTTG................................................................................................. 22 0 1 5.00 5 2 3 0 0 0 0
...................................................................................................TCACTGGGTGAAGATTGTCGT....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCGCTGGGTGAAGTTTGTCGT....................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGTAT..................................................... 23 1 1 5.00 5 5 0 0 0 0 0
........................................................AGGTAAACTTTGTTCAGTTTT.................................................................................................. 21 0 1 4.00 4 2 2 0 0 0 0
...................................................................................................TCACTGGGTAAAGTTTGTCGT....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
..........................................................GGAAACTTTGTTCAGTTTTGCC............................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...................................................................................................TCACTGGATGAAGTTTGTCGT....................................................... 21 1 1 4.00 4 2 2 0 0 0 0
...................................................................................................TCACTGGGTGAATTTTGTCGTA...................................................... 22 1 1 4.00 4 3 1 0 0 0 0
...................................................................................................GCACTGGGTGAAGTTTGTCTTAA..................................................... 23 3 1 4.00 4 3 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTGGTCGT....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...................................................................................................TCACGGGGTGAAGTTTGTCGT....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...................................................................................................TCACTGGGTTAAGTTTGTCGT....................................................... 21 1 1 4.00 4 4 0 0 0 0 0
....................................................................................................CACTGGGTGAAGTTTGTCGT....................................................... 20 0 1 4.00 4 4 0 0 0 0 0
...................................................................................................TAACTGGGTGAAGTTTGTCGTA...................................................... 22 1 1 4.00 4 0 4 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCCTA...................................................... 22 1 1 4.00 4 2 2 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGGA...................................................... 22 2 1 4.00 4 4 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTCTGTCGTA...................................................... 22 1 1 4.00 4 2 2 0 0 0 0
...................................................................................................TCACTTGGTGAAGTTTGTCGTC...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGAGTGAAGTTTGTCGT....................................................... 21 1 1 3.00 3 2 1 0 0 0 0
................................................................................................ATCTCACTGGGTGAAGTTTGTCGTA...................................................... 25 3 1 3.00 3 3 0 0 0 0 0
........................................................ATGTAAACTTTGTTCAGTTTTG................................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0
...................................................................................................TTACTGGGCGAAGTTTGTCGTA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGACGAAGTTTGTCGTA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTTGTT...................................................... 22 2 1 3.00 3 2 1 0 0 0 0
...................................................................................................TTACTGGGTGAAGTTTGTCGTAA..................................................... 23 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCG........................................................ 20 1 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCTC....................................................... 21 2 1 3.00 3 2 1 0 0 0 0
...................................................................................................TCATTGTGTGAAGTTTGTCGT....................................................... 21 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTTGTCGTAT..................................................... 23 1 1 3.00 3 2 1 0 0 0 0
...................................................................................................TCACTGGGTGTAGTTTGGCGTA...................................................... 22 2 1 3.00 3 0 3 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTAAT.................................................... 24 2 1 3.00 3 2 1 0 0 0 0
...................................................................................................TGACTGTGTGAAGTTTGTCGTA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
..................................................................................................ATAACTGGGTGAAGTTTGTCGT....................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGGGAAGTTTGTCGC....................................................... 21 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCATTGGGCGAAGTTTGTCGT....................................................... 21 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTCA..................................................... 23 2 1 3.00 3 0 3 0 0 0 0
..................................................................................................CTCACTGGGTGAAGTTTGTCGT....................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGAGAAGTTTGTCGC....................................................... 21 2 1 3.00 3 3 0 0 0 0 0
.....................................................................................................TCTGGGTGAAGTTTGTCGTA...................................................... 20 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................CGCACTGGGTGAAGTTTGTCGTAA..................................................... 24 3 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGGC...................................................... 22 2 1 3.00 3 2 1 0 0 0 0
..................................................................................................ATCACTGGGTGAAGTTTGTCGTC...................................................... 23 1 1 3.00 3 3 0 0 0 0 0
...................................................................................................TGACTGGGGGAAGTTTGTCGTA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTAGTA...................................................... 22 1 1 3.00 3 1 2 0 0 0 0
..................................................................................................ATCACTGGGTGAAGTTTGTCGTA...................................................... 23 0 1 3.00 3 2 1 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCGTAC..................................................... 23 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTTT..................................................... 23 1 1 3.00 3 3 0 0 0 0 0
...................................................................................................TCAATGGGTGAAGTTTGTCGTA...................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...................................................................................................TGACTTGGTGAAGTTTGTCGTA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TTGGTGAAGTTTGTCGTA...................................................... 18 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................CTCTCTGGGTGAAGTTTGTCGTA...................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCCCTGGGTGAAGTTTGTCGC....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGGAGTTTGTCGT....................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..................................................................................................CTAACTGGGTGAAGTTTGTCGTA...................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCGGA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................GCACTGGGTGAAGTTTGTCGC....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TGACTGGGTGTAGTTTGTCGTA...................................................... 22 2 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCACTGTGTGAAGTTTGTCGTAA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAGGTTTGTCGTT...................................................... 22 2 1 2.00 2 1 1 0 0 0 0
..........................................................GTATACTTTGTTCAGTTTTGCC............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTTG........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGGAA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGCGTGAAGTTTGTCGTA...................................................... 22 1 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCACAGGGTGAAGTTTGTCGTA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTTGTCGC....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTTGTCGTT...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTCGTCGTC...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGTTGAAGTTTGTCGT....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................CGCTGGGTGAAGTTTGTCGTA...................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................................................................CTCACTGGGTGAAGTTTGTCGTC...................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TTACTGGGTGAAGTTTGTCGTAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................ACTGGGTGAAGTTTGTCGTC...................................................... 20 1 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCAATGGGGGAAGGTTGTCGTA...................................................... 22 3 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTCTCGT....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGATTGTCGTC...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGACGTTTGTCGT....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCATAA..................................................... 23 2 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCACTGGGGGAAGGTTGTCGTA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCTTAT..................................................... 23 1 1 2.00 2 1 1 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGTAG..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
.......................................................AAGGTAAACTTTGTTCAGTTTT.................................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCAATGGGAGAAGTTTGTCGTA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCTA....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
..................................................................................................ATCACTGGGTGAAGTTTGTCT........................................................ 21 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TGCCTGGGTGAAGTTTGTCGTA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCAC....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAACTTTGTCGTA...................................................... 22 1 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGCTTGTCGTT...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCATTGGGTGTAGTTTGTCGTA...................................................... 22 2 1 2.00 2 1 1 0 0 0 0
..................................................................................................ATCTCTGGGTGAAGTTTGTCGT....................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CCACTGGGTGAAGTTTGTCGC....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
....................................................................................................CACTGGGTGAAGTTTGTCGTC...................................................... 21 1 1 2.00 2 1 0 1 0 0 0
...................................................................................................TCACTGGGTGAAGTGTGTCGTA...................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTCTCGC....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTTA..................................................... 23 2 1 2.00 2 0 2 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGT.......................................................... 18 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGGCGTC...................................................... 22 2 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCCCTGGGTGAAGTTTGTCGTC...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGATTGTCGTAA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
.................................................................................................TCTCACTGGGTGAAGTTTGTCGT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCATTGGGTGAAGTTTGTCG........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCC........................................................ 20 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTCGTAC..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAATTTGTCGTA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................GCACTGGGTGAAGTTTGTCTTAT..................................................... 23 2 1 2.00 2 1 1 0 0 0 0
..................................................................................................CGCACTGGGTGAAGTTTGTCGT....................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TGACTGGGTGCAGTTTGTCGT....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTAGGTGAAGTTTGTCGC....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGAGCAGTTTGTCGTA...................................................... 22 2 1 2.00 2 1 1 0 0 0 0
...................................................................................................TCACTTGGTGAAGTTTGTCGTAA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTATG.................................................... 24 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................GCATTGGGTGAAGTTTGTCTTA...................................................... 22 3 2 1.50 3 3 0 0 0 0 0
...................................................................................................TCACTGGGCGCAGTTTGTCGTA...................................................... 22 2 2 1.50 3 2 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGATTATCGTC...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTTGGTGCAGTTTGTCGTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTTGGTGAAGTTTGTCGTAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................ACACTGGGTGAAGTTTGTCTT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGCACTTTGTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTGGTC...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTTTTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................GGGGTGAAGTTTGTCGTA...................................................... 18 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTTGTTGAAGTTTGTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGACTGGGTGAAGCTTGTCGT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TAACTGGGTGCAGTTTGTCGTAA..................................................... 23 3 1 1.00 1 0 1 0 0 0 0
....................................................................................................CACTGGGGGAAGTTTTTCGTA...................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGGCTGAAGTTTGTCGTAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGCGAACTTTGTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGGTTGTCGGA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACGGGGTGAAGAGTGTCGTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
....................................................................................................TACTGGGTGAAGTTTGTCGT....................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCGCTGGGTGAAGTTTGTCGTAA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGG....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTAAGTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTTTCGG....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGCAGTTCGTCGT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
........................................................AGGTAAACTTTGTTCAGTTTTGC................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGCCTGGGTGAAGTTTGTCGTAA..................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTTGGTGAAGTTTGTCGTT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGGTTCTCCTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTTGGCGAAGTTTGTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................ACTGGGTGAAGTTTGTCGTAA..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TTACTGGGTGACGTTTGTTGTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
..........................................................GTAATCTTTGTTCAGTTTTGCC............................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGTGTGCAGTTTGTCGTC...................................................... 22 3 2 1.00 2 2 0 0 0 0 0
...................................................................................................TAACTGGGTGAAGTTTGTCGC....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCG........................................................ 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGCGAAGTTTGTCGTAC..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGTACGA................................................... 25 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCCTGGGTGAAGTTTGTCGTAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCCTGGGTGCAGTTTGTCGTC...................................................... 22 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGTGTGACTTTTGTCGTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...................................................................................................AGCCTGGGTGAAGTTTGTCGTA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................TAACTGGGTGAAGTTTGTCGTG...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTAGTCGTA...................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGAGAAGTTTTTCGTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTAGTT...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGAGTGAAGTTTGTCGC....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGACTGGGTAAAGTTTGTCGTAA..................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGACTGTGTGAAGTTTGTCGTATC.................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGTAGTTTGTCGTC...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TGACTGGGTGAAGTTTGTTGT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCATTGGGTGTAGTTTGTCGTG...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCAATGGGTGAAGGTTGTCGTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGGGAGAAGTTTGTCGTT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGACTGGGTGAAGTGTGTCGTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGCCGTC...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCATTGGGGGAAGTTTGTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTCGAAA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................TAACTGCGTGAAGTTTGTCGTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................ATCATCACTGGGTGAAGTTTGTCGT....................................................... 25 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCCCTGGGCGAAGTTTGTCGC....................................................... 21 3 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACCGGGAGAAGTTTGTCGTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCTCTGGGTGAAGTTTGTCGT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGACTGAAGTTTGTCGT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGTTTGTTGTAT..................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................AGCACTGGGTGAAGTTTGTCGTA...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TCACTGGGTGAAGGTTGTCGTC...................................................... 22 2 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

ATTCCTAGCCTCACCGTGTCACGTATATATATATATATGTTCTTGTCTTATAATATTCCATTTGAAACAAGTCAAAACGGCCCAAGATACAACACGCGTAGTGACCCACTTCAAACAGCATATTAGCTTTGCTTTGTCGTTCCTTTTTCAGGTCAGTTAAGTTGCCTTGAGAGCG

***************************************.......((((((.(((((((((((((((((..(((((............)).)))..))))))))))))))))).))))))...........******************************************* 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V056

head

 V110

male body
...............................................TTATAATATTCAACTTGAAA............................................................................................................ 20 2 8 0.63 5 5 0 0
...............................................TTATAATATTCAACTTGAA............................................................................................................. 19 2 19 0.47 9 9 0 0
...............................................TTATAATATTCAACTTGAAAG........................................................................................................... 21 3 20 0.25 5 5 0 0
......................................................................................................GACCAAATTCAAACAGCAAAT.................................................... 21 3 9 0.11 1 0 1 0
................................................TATAATATTCAACTTGAAA............................................................................................................ 19 2 20 0.05 1 1 0 0
..................................ATAGGTACGTGTCTTATAAT......................................................................................................................... 20 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20937069-20937243 - dmo-mir-309 Known_mirbase TAAGGATCG--GA--GTGGCA-----C--A-------GTGCAT-A----T----------------AT----ATATATATACA-AGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCC----------------GGGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAG-CAAGGA---AA------A---AGTC----------CAG---TCAATT-------C-AACGG-AACTCTCGC
droVir3 scaffold_12875:4111770-4111950 + dvi-mir-309 Known_mirbase TAAGGAACCGGCG--CAAAGA-AG-AA-----------------G----C----------------CC------A----A---TATAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCC----------------AGGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACA-GCAAAA---AAAAATAAA---A--ATAAAACAATATTA--TTAAATAAAAA---T-A-CCA-GAATCTCAT
droGri2 scaffold_5621:2476-2651 + dgr-mir-309-2 Known_mirbase CAAGGATCGCTTAGAGTA--A-CA-GA--A--------AT--AAG----T----------------CTAA---A----AAATATATAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGAC----------------AACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT--G--GA-TCAGCT---AA------A------------------AGTTGTACATAAAAATGCTTG-CCA-AATTTTCAT
droWil2 scf2_1100000004514:1652017-1652218 - dwi_187 confident AGAGT------CAGTGTA--A-C------A-------GTGAATAGTTCATCTA------AGAAAAA--CTCAATC----ATTTCAT-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAA-TCAAAATACAA------TTGGAGTGTTAAAAAAAA---AGGAGAGTA---------ATC-----GAATTTA
dp5 3:12677834-12678008 - dps-mir-309 Known_mirbase AGGTG--CCCGAA--GTGAAGGAG-AAAAAG---------------------A------AAGAAAA--ACAAACT----ATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGT--AAGCGATCAGCG---AG----------CGTCTCAGCGCACA---TTGTGAACG---------AC-----GATACCGA
droPer2 scaffold_2:8905652-8905832 + dpe-mir-309 Known_mirbase AGGTG--CCCGAA--GTGAAGGAG-AAAAAG---------------AAAAAGA------AAAAAAA--ACGAACT----ATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGT--AAGCGATCAGCG---AG----------CGTCTCAGCGCACA---TTGTGAACG---------AC-----GATACCGA
droAna3 scaffold_13266:9731083-9731219 + dan-mir-309 Known_mirbase TGAAGAGCCGCGA--GTTACA-----A--A-------GTGAA--G---------------------------------------------A-TCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGT-CCAGAC---AT------C------------------TG---TGAGCC---------CCCAA-----C---T
droBip1 scf7180000396427:874062-874201 + TGAAGAGCCGCGA--GTTACA-----A--A-------GTG-----------------------------------------------AAAG-CCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGT-CCAGAA---AT------C------------------TG---TGAATC---------CTCCG-----CTCCG
droKik1 scf7180000302679:89631-89776 - TGAGG-TAAG-------------GCAA--A-------GTGAA--G-----------------------------------CTTCGGCAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGA-CCAGCA---AT------C-----------------CAG---TGAACC---------AGCAA-AGGTCCCGA
droFic1 scf7180000454039:848283-848428 - TGAAGATCAAAGA--GTGAAC----AA--A--------------T----A----------------CT----AG----AAGCTCCGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGA-CCAGTA---AA------G------------------TG---TTAACT---------ACC----------AA
droEle1 scf7180000491201:2014238-2014400 - TGAGGATCCAGCA--GTGAAA-CATAG--A---TCAA----------AGCAGCAAGCAA-------CT----CG----AA----GGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGA-CCATCT-CGAA------C------------------AG---TGAATT---------ATCGA--------AA
droRho1 scf7180000780066:73365-73522 + TGAGGATCCAGCA--GTGAAC-CAAAA--A--------------G----T----------------A----AATA----AGCTCGGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCA----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGA-CCAGCT---AA------C------------------TG---TGATCA---------AACAA-AGGCCTCGA
droBia1 scf7180000302143:3060066-3060212 - TGACGATCCAGCA--GTGAAA----GA--A--------------G----T----------------A----AATC----AGCTCGGGACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGA-CCAGCA---AA------G------------------TG---TGAAGC---------ACC---------CGA
droTak1 scf7180000415384:83763-83919 + TGAGGATCCAGCA--GTGAAA-A--AA--A--------------G----T----------------A----AAAC----AGTTCGGAACAG-TAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGA-CCAGCT---TA------T------------------TG---TGAACC---------AACCAAAGGTCTCGA
droEug1 scf7180000409474:2396577-2396725 + TGAAGATCAAGCA--GTGAAA-AC-AA--A------------------------------------------ATC----AGTTCGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAA-CCAGCT---AA------T------------------AG---TGAATC-------T-A-CCA-AAA-----C
dm3 chr2R:15549175-15549325 - dme-mir-309 Known_mirbase TAAGGATCCCGCA--GTGAGA-AGCGA--A--------------G----T----------------CT----TA----AAGTTTGGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCT---AA------T------------------TG---TGAGCC---------ACCTA---------A
droSim2 2r:16196445-16196594 - dsi-mir-309 Known_mirbase TGAGGATCTAGTA--GTGCAA-AG-CA--A--------------G----T----------------CT----TA----AAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCT---AA------T------------------TG---TGAACC---------ACCAA---------A
droSec2 scaffold_1:13063902-13064052 - dse-mir-309 Known_mirbase TGAGCATCCAGCA--GTGAAA-AGCAA--T--------------G----T----------------CT----TA----AAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCT---AA------T------------------TG---TGAATC---------ACCAA---------A
droYak3 2R:13623456-13623613 + dya-mir-309 Known_mirbase TGATGATCCAGCA--GTGAAA-ACAAA--AGTATCAA----------------------------A--GC---A----AAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCAGCCAA------G------------------TG---TGAACC---------ATC----------AA
droEre2 scaffold_4845:9749419-9749569 - der-mir-309 Known_mirbase TGAGGATCCCGCA--GTGAAA-AGTAA--A--------------G----T----------------A----TACG----AGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCC---AA------T------------------TG---TGAACC---------CACCA---------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TAAGGATCG--GA--GTGGCA-----C--A-------GTGCAT-A----T----------------AT----ATATATATACA-AGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCC----------------GGGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAG-CAAGGA---AA------A---AGTC----------CAG---TCAATT-------C-AACGG-AACTCTCGCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA...........................................................................................22116785.00167855234933144214
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT............................................................................................2113875.00387572912235685
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC...........................................................................................221620.00620240105770
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC............................................................................................211584.0058400005840
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA..........................................................................................231540.005400162003771
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT..........................................................................................231347.00347020003270
................................................................................................................................................................TCACTGGGTGAAGTTTGTCG.............................................................................................201153.00153128111220
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC..........................................................................................23177.00770100760
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT...........................................................................................22164.00640500590
..................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA...........................................................................................20148.004803000180
......................................................................................................GTAAACTTTGTTCAGTTTTGCC----------------.....................................................................................................................................22134.00340000340
.................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA...........................................................................................21123.00230000230
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT............................................................................................22121.00210100200
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG............................................................................................21111.00110000110
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT.........................................................................................24111.00110000110
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCG.............................................................................................21110.0010020080
..................................................................................................................................................................ACTGGGTGAAGTTTGTCGT............................................................................................19110.0010040060
......................................................................................................GTAAACTTTGTTCAGTTTTGC......................................................................................................................................................2119.009000090
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC.........................................................................................2419.009000090
................................................................................................................................................................TCACTGGGTGAAGTTTGTC..............................................................................................1919.009010080
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCGC............................................................................................2219.009000090
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG...........................................................................................2218.008040040
..........................................................................................................................CC----------------GGGTTCTATGTTGTGC-GCA.................................................................................................................2118.008050030
...................................................................................................................................................................CTGGGTGAAGTTTGTCGTA...........................................................................................1917.007000070
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGA............................................................................................2117.007000070
....................................................................................................................................................................TGGGTGAAGTTTGTCGTA...........................................................................................1817.007020050
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA.........................................................................................2416.006010050
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC...........................................................................................2215.005000050
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG..........................................................................................2315.005030020
..........................................................................................................................CC----------------GGGTTCTATGTTGTGC-GC..................................................................................................................2015.005000050
....................................................................................................AGGTAAACTTTGTTCAGTTTTG.......................................................................................................................................................2215.005030020
....................................................................................................AGGTAAACTTTGTTCAGTTTT........................................................................................................................................................2114.004020020
.................................................................................................................................................................CACTGGGTGAAGTTTGTCGT............................................................................................2014.004000040
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTC............................................................................................2113.003010020
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT.........................................................................................2413.003010020
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA..........................................................................................2313.003030000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGGC...........................................................................................2213.003010020
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTC...........................................................................................2313.003000030
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA...........................................................................................2313.003010020
..................................................................................................................................................................ACTGGGTGAAGTTTGTCGTC...........................................................................................2012.002020000
...................................................................................................AAGGTAAACTTTGTTCAGTTTT........................................................................................................................................................2212.002020000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA............................................................................................2112.002000020
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCT.............................................................................................2112.002000020
................................................................................................................................................................TCACTGGGTGAAGTTTGTCAC............................................................................................2112.002000020
.................................................................................................................................................................CACTGGGTGAAGTTTGTCGTC...........................................................................................2112.002100010
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA..........................................................................................2312.002020000
................................................................................................................................................................TCACTGGGTGAAGTTTGT...............................................................................................1812.002000020
................................................................................................................................................................TCACTGGGTGAAGTTTGTCC.............................................................................................2012.002000020
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG.........................................................................................2412.002000020
....................................................................................................AGGTAAACTTTGTTCAGTTTTGC......................................................................................................................................................2311.001000010
..................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA..........................................................................................2111.001010000
droVir3
TAAGGAACCGGCG--CAAAGA-AG-AA-----------------G----C----------------CC------A----A---TATAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCC----------------AGGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACA-GCAAAA---AAAAATAAA---A--ATAAAACAATATTA--TTAAATAAAAA---T-A-CCA-GAATCTCATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA...........................................................................................22119425.0019425004546600000002110664110000000101102202289043365814141185202058906690320287108226365931121816110282947130001491511117300100789374377225251
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT............................................................................................2111582.001582001437000000001300000000000000100115131345133000002118352916335181064400042311300010675010000611501494835
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA..........................................................................................2311459.001459201135000000001200000000000010000003906068195960000373567147457272210757000529500000432900000125162288
....................................................................................................TGGTAAACTTTGTTCAGTTTTG.......................................................................................................................................................221454.004540002000000000000000000000000000046020671041490000313601001000000001100000221200000074058
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT..........................................................................................231247.002470019100000000000000000000000000000066122000006677711427230000424000001240000008111030
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC...........................................................................................221239.00239100380000000001000000100000001000000030000001562427614177435000193100000321000001090000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCG.............................................................................................20176.007600023000000000000000000000000000100414200000541322011000000070000200200000014402
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC............................................................................................21165.006500062000000000000000000000000000000200000000000000000000000000000000100000000000
..................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA...........................................................................................20157.0057000500000000050000000000000000001046105000000000000000000000200000000000000010000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT.........................................................................................24149.004900015000000000000000000000000000000010000000328743100200000000000001000000000110
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC..........................................................................................23146.004600027000000000000000000000000000000000000000053501101000000020000000000000000001
..........................................................................................................................CC----------------AGGCTCTTT-TTGTGC-GCA.................................................................................................................20129.00290000000000000000000000000000000040239800000010000000000000010000000000100000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT...........................................................................................22129.00290009000000000000000000000000000000100100000012202311010000020000000200000000010
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA...........................................................................................23121.002100010000000000000000000000000000000100100000111000000001000020000000100000010001
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT............................................................................................22120.00200005000000000000000000000000000010002100000100101000000000030000010100000030000
..........................................................................................................................CC----------------AGGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTA...........................................................................................42117.001700000000000000000000000000000000000000000001160000000000000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG...........................................................................................22117.00170002000000001000000000000000000000111000000100100001000000070000000000000000010
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG..........................................................................................23112.00120003000000000000000000000000000000101000000100111000000000010000000100000000001
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA.........................................................................................24112.00120001000000000000000000000000000000020000000130001000000000110000000100000000001
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAC.........................................................................................2418.0080000000000000000000000000000000000000000001210111000100000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA..........................................................................................2318.0080000000000000000000000000000000000003000000010000000000000040000000000000000000
....................................................................................................TGGTAAACTTTGTTCAGTTTT........................................................................................................................................................2118.0080000000000000000000000000000000000033100000000000000000000000000000000000010000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC.........................................................................................2418.0080002000000000000000000000000000000000000000000130010000000010000000000000000000
.................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA...........................................................................................2117.0070002000000000100000000000000000000101100000000000000000000010000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT.........................................................................................2417.0070002000000000000000000000000000000001000000001000000000000020000001000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAG.........................................................................................2417.0070001000000000000000000000000000000001100000111000000000000000000000000000000100
................................................................................................................................................................TCACTGGGTGAAGTTTGTC..............................................................................................1917.0070000000000000000000000000000000000110000000100110010000000000000000000000010000
....................................................................................................TGGTAAACTTTGTTCAGTTTTGC......................................................................................................................................................2315.0050003000000000000000000000000000000000000001100000000000000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATTT........................................................................................2515.0050000000000000000000000000000000000000000000010001010000000110000000000000000000
....................................................................................................................................................................TGGGTGAAGTTTGTCGTA...........................................................................................1815.0050001000000000000000000000000000010001000000000000000000000020000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATAA........................................................................................2515.0050000000000000000000000000000000000000000000020010001000000010000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG............................................................................................2115.0050004000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................TGGTAAACTTTGTTCAGTTT.........................................................................................................................................................2014.0040000000000000000000000000000000000001000000110000000000000000000000000000000010
................................................................................................................................................................TCACTGGGTGAAGTTTGT...............................................................................................1814.0040000000000000000000000000000000000010100000020000000000000000000000000000000000
....................................................................................................TGGTAAACTTTGTTCAGTTTTGCC----------------.....................................................................................................................................2413.0030001000000000000000000000000000000000000000100001000000000000000000000000000000
..................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA..........................................................................................2113.0030000000000000000000000000000000000101000000000000000000000010000000000000000000
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCG.............................................................................................2113.0030001000000000000000000000000000000000000000000000000000000010000000000000000001
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCC..........................................................................................2312.0020000000000000000000000000000000000000000000100000000000000010000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAACC........................................................................................2512.0020000000000000000000000000000000000000000000001100000000000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAATC........................................................................................2512.0020000000000000000000000000000000000000000000000200000000000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG.........................................................................................2412.0020001000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................CTGGGTGAAGTTTGTCGTA...........................................................................................1912.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA..........................................................................................2311.0010000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC...........................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
......................AG-AA-----------------G----C----------------CC------A----A---TATAACAA-AT...................................................................................................................................................................................2011.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................AGGCTCTTT-TTGTGC-GCA.................................................................................................................1811.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCT.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTGC..........................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
droGri2
CAAGGATCGCTTAGAGTA--A-CA-GA--A--------AT--AAG----T----------------CTAA---A----AAATATATAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGAC----------------AACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT--G--GA-TCAGCT---AA------A------------------AGTTGTACATAAAAATGCTTG-CCA-AATTTTCATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droWil2
AGAGT------CAGTGTA--A-C------A-------GTGAATAGTTCATCTA------AGAAAAA--CTCAATC----ATTTCAT-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAA-TCAAAATACAA------TTGGAGTGTTAAAAAAAA---AGGAGAGTA---------ATC-----GAATTTASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTA...........................................................................................22112777.001277712601273515
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAA..........................................................................................2313479.00347904034705
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTT............................................................................................2111173.00117308011650
..................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA...........................................................................................20191.0091000910
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAT..........................................................................................23172.0072010710
................................................................................................................................................CCTTA--------GCATCACTGGGTGAAG....................................................................................................21147.0047000470
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTT...........................................................................................22135.0035000350
..................................................................................................................................................................ACTGGGTGAAGTTTGTCTTAA..........................................................................................21126.0026000260
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAC..........................................................................................23123.0023000230
...................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTG................................................................................................22120.0020000200
.................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA...........................................................................................21119.0019040150
................................................................................................................................................CCTTA--------GCATCACTGGGTGAAGT...................................................................................................22118.0018000180
....................................................................................................TGATAAACTTTGTTCAGTTTT........................................................................................................................................................21114.0014000140
........................................................................................................AAACTTTGTTCAGTTTTGCAA....................................................................................................................................................21113.0013000130
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAG..........................................................................................23112.0012000120
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTG...........................................................................................22112.0012000120
...................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGC...............................................................................................23110.0010000100
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAT.........................................................................................24110.0010000100
...................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGT...............................................................................................2319.00901080
................................................................................................................................................................TCACTGGGTGAAGTTTGTCT.............................................................................................2018.00800080
........................................................................................................AAACTTTGTTCAGTTTTGCAAT...................................................................................................................................................2218.00800080
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA............................................................................................2117.00700070
.......................................................................................................TAAACTTTGTTCAGTTTTGCAA....................................................................................................................................................2217.00700070
..................................................................................................................................................................ACTGGGTGAAGTTTGTCTT............................................................................................1917.00700070
..................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTG................................................................................................2317.00700070
....................................................................................................TGATAAACTTTGTTCAGTTTTG.......................................................................................................................................................2216.00601050
.................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAA..........................................................................................2216.00600060
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCT.............................................................................................2115.00500050
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTATA.........................................................................................2415.00500050
.......................................................................................................TAAACTTTGTTCAGTTTTGCA.....................................................................................................................................................2114.00401030
..................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGT...............................................................................................2414.00400040
..................................................................................................................................................TTA--------GCATCACTGGGTGAAGTT..................................................................................................2114.00400040
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAG.........................................................................................2414.00400040
............................................................................................................TTTGTTCAGTTTTGCAATCAAA...............................................................................................................................................2213.00300030
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAC.........................................................................................2413.00300030
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCTT............................................................................................2213.00300030
........................................................................................................AAACTTTGTTCAGTTTTGCAATC..................................................................................................................................................2313.00300030
....................................................................................................................................................A--------GCATCACTGGGTGAAGTTTG................................................................................................2113.00300030
...................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA..........................................................................................2013.00300030
............................................................................................................TTTGTTCAGTTTTGCAATCAA................................................................................................................................................2113.00301020
................................................................................................................................................................TCACTGGGTGAAGTTTGTC..............................................................................................1913.00300030
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTTA..........................................................................................2312.00200020
...................................................................................................ATGATAAACTTTGTTCAGTTTT........................................................................................................................................................2212.00200020
....................................................................................................TGATAAACTTTGTTCAGTTTTGT......................................................................................................................................................2312.00200020
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTGA..........................................................................................2312.00200020
....................................................................................................................................................................TGGGTGAAGTTTGTCTTA...........................................................................................1812.00200020
...............................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGT...................................................................................................2312.00200020
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTCTTT...........................................................................................2311.00100010
...................................................................................................................................................TA--------GCATCACTGGGTGAAGT...................................................................................................1911.00100010
..................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGA...............................................................................................2411.00100010
............................................................................................................TTTGTTCAGTTTTGCAATCAAAAA.............................................................................................................................................2411.00100010
.................................................................................................................................................................CACTGGGTGAAGTTTGTCTT............................................................................................2011.00101000
..........................................................................................................................CAATCAAAAAATCAAGAAAATTCCTT.............................................................................................................................2611.00100010
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTC...........................................................................................2211.00100010
................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAGC.........................................................................................2411.00100010
................................................................................................................................................................TCACTGGGTGAAGTTTGA...............................................................................................1811.00100010
...........................................................................................................CTTTGTTCAGTTTTGCAATCA.................................................................................................................................................2111.00100010
........................................................................................................................................AGAAAATTCCTTA--------GCATCACTGGGTGA......................................................................................................2711.00100010
....................................................................................................................................................A--------GCATCACTGGGTGAAGTTTGTC..............................................................................................2311.00100010
..................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGC...............................................................................................2411.00100010
...............................................................................................................................................................ATCACTGGGTGAAGTTTGTC..............................................................................................2011.00100010
...............................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGTTTGTC..............................................................................................2811.00100010
............................................................................................................................ATCAAAAAATCAAGAAAATTCCTTA--------GC..................................................................................................................2711.00100010
................................................................................................................................................................TCACTGGGTGAAGTTTGT...............................................................................................1811.00100010
.................................................................................................................................................CTTA--------GCATCACTGGGTGAAG....................................................................................................2011.00100010
...................................................................................................................................................TA--------GCATCACTGGGTGAAGTT..................................................................................................2011.00100010
................................................................................................................................................CCTTA--------GCATCACTGGGTGA......................................................................................................1911.00100010
............................................................................................................TTTGTTCAGTTTTGCAATC..................................................................................................................................................1911.00100010
..................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTT.................................................................................................2211.00100010
...................................................................................................................................................TA--------GCATCACTGGGTGAAGTTT.................................................................................................2111.00100010
............................................................................................................TTTGTTCAGTTTTGCAAT...................................................................................................................................................1811.00100010
................................................................................................................................................CCTTA--------GCATCACTGGGTGAA.....................................................................................................2011.00100010
........................................................................................................AAACTTTGTTCAGTTTTGCA.....................................................................................................................................................2011.00100010
................................................................................................................................................................TCACTGGGTGAAGTTTGTTA.............................................................................................2020.50100010
dp5
AGGTG--CCCGAA--GTGAAGGAG-AAAAAG---------------------A------AAGAAAA--ACAAACT----ATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGT--AAGCGATCAGCG---AG----------CGTCTCAGCGCACA---TTGTGAACG---------AC-----GATACCGASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA...........................................................................................2212449.00244907712400113200000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT............................................................................................211480.00480025295015901000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA..........................................................................................231166.00166075909802000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCT.............................................................................................20139.003906290400000
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT............................................................................................22135.003501260800000
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTA...........................................................................................23117.00170280700000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTC............................................................................................21116.001600150100000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT...........................................................................................22113.00130130900000
....................................................................................................CGATAAACTTTGTTCAGTTTTG.......................................................................................................................................................22112.00120350400000
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTCT.............................................................................................21111.00110170300000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT..........................................................................................23110.00100140500000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAC..........................................................................................2319.0090030600000
.................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA...........................................................................................2118.0080710000000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCC.............................................................................................2018.0080080000000
...................................................................................................ACGATAAACTTTGTTCAGTTTT........................................................................................................................................................2217.0070150100000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC...........................................................................................2216.0060060000000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG...........................................................................................2215.0050000500000
....................................................................................................CGATAAACTTTGTTCAGTTTT........................................................................................................................................................2115.0050030200000
................................................................................................................................................................GCACTGGGTGAAGTTTGTC..............................................................................................1914.0040040000000
..................................................................................................TACGATAAACTTTGTTCAGTTTT........................................................................................................................................................2313.0030030000000
.................................................................................................................................................................CACTGGGTGAAGTTTGTCTT............................................................................................2013.0030210000000
...................................................................................................ACGATAAACTTTGTTCAGTTTC........................................................................................................................................................2212.0020020000000
..................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA...........................................................................................2012.0020020000000
.................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAT..........................................................................................2212.0020010100000
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTCC.............................................................................................2112.0020020000000
...................................................................................................................................................................CTGGGTGAAGTTTGTCTTA...........................................................................................1911.0010100000000
..................................................................................................TACGATAAACTTTGTTCAGTTT.........................................................................................................................................................2211.0010010000000
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTC..............................................................................................2011.0010010000000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAAG.........................................................................................2411.0010010000000
....................................................................................................CGATAAACTTTGTTCAGTTT.........................................................................................................................................................2011.0010000000010
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCA..........................................................................................2311.0010000100000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTATT.........................................................................................2411.0010010000000
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTT...........................................................................................2311.0010010000000
....................................................................................................CGATAAACTTTGTTCAGTTTTGT......................................................................................................................................................2311.0010010000000
...................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA..........................................................................................2011.0010010000000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTG............................................................................................2111.0010010000000
.....................................................................................................GATAAACTTTGTTCAGTTTTG.......................................................................................................................................................2111.0010100000000
....................................................................................................CGATAAACTTTGTTCAGTTTTGC......................................................................................................................................................2311.0010010000000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCC..........................................................................................2311.0010000100000
droPer2
AGGTG--CCCGAA--GTGAAGGAG-AAAAAG---------------AAAAAGA------AAAAAAA--ACGAACT----ATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGT--AAGCGATCAGCG---AG----------CGTCTCAGCGCACA---TTGTGAACG---------AC-----GATACCGASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA...........................................................................................221207.0020715101710101
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT............................................................................................21148.00486138021
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA..........................................................................................23123.00230218021
................................................................................................................................................................GCACTGGGTGAAGTTTGTCT.............................................................................................2015.005102020
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT............................................................................................2215.005113000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT...........................................................................................2212.002002000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT..........................................................................................2312.002001010
....................................................................................................CGATAAACTTTGTTCAGTTTTG.......................................................................................................................................................2212.002002000
................................................................................................................................................................GCACTGGGTGAAGTTTGTC..............................................................................................1911.001001000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTA............................................................................................2111.001001000
...............................................................................................................................................................AGCACTGGGTGAAGTTTGTCT.............................................................................................2111.001001000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG...........................................................................................2211.001001000
..................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA...........................................................................................2011.001001000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCC.............................................................................................2011.001100000
....................................................................................................CGATAAACTTTGTTCAGTTTT........................................................................................................................................................2111.001100000
................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC...........................................................................................2211.001000010
droAna3
TGAAGAGCCGCGA--GTTACA-----A--A-------GTGAA--G---------------------------------------------A-TCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGT-CCAGAC---AT------C------------------TG---TGAGCC---------CCCAA-----C---TSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...........................................................................................221207.002072492741025
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT............................................................................................211150.00150157948512
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC............................................................................................21119.00190190000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.............................................................................................20115.00150132000
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT............................................................................................2217.007051100
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...........................................................................................2114.004310000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..........................................................................................2313.003012000
.......................................................................................................CAAACCTTGTTCGGTTTTGC......................................................................................................................................................2012.002010100
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCT............................................................................................2012.002200000
................................................................................................................................................................GCACTGGGTAAAGTTTGT...............................................................................................1811.001010000
....................................................................................................CGACAAACCTTGTTCGGTTTT........................................................................................................................................................2111.001001000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...........................................................................................2211.001001000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG..........................................................................................2311.001010000
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCC.............................................................................................2111.001001000
....................................................................................................CGACAAACCTTGTTCGGTTTTT.......................................................................................................................................................2211.001001000
.................................................................................................ATACGACAAACCTTGTTCGGTT..........................................................................................................................................................2211.001010000
................................................................................................................................................................GCACTGGGTAAAGTTTGC...............................................................................................1811.001010000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCT............................................................................................1911.001010000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG............................................................................................2111.001010000
....................................................................................................CGACAAACCTTGTTCGGTTTTG.......................................................................................................................................................2211.001000001
...................................................................................................ACGACAAACCTTGTTCGGTTT.........................................................................................................................................................2111.001010000
droBip1
TGAAGAGCCGCGA--GTTACA-----A--A-------GTG-----------------------------------------------AAAG-CCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGT-CCAGAA---AT------C------------------TG---TGAATC---------CTCCG-----CTCCGSizeHit CountTotal NormTotal
No Reads
droKik1
TGAGG-TAAG-------------GCAA--A-------GTGAA--G-----------------------------------CTTCGGCAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGA-CCAGCA---AT------C-----------------CAG---TGAACC---------AGCAA-AGGTCCCGASizeHit CountTotal NormTotal
No Reads
droFic1
TGAAGATCAAAGA--GTGAAC----AA--A--------------T----A----------------CT----AG----AAGCTCCGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGA-CCAGTA---AA------G------------------TG---TTAACT---------ACC----------AASizeHit CountTotal NormTotal
No Reads
droEle1
TGAGGATCCAGCA--GTGAAA-CATAG--A---TCAA----------AGCAGCAAGCAA-------CT----CG----AA----GGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGA-CCATCT-CGAA------C------------------AG---TGAATT---------ATCGA--------AASizeHit CountTotal NormTotal
No Reads
droRho1
TGAGGATCCAGCA--GTGAAC-CAAAA--A--------------G----T----------------A----AATA----AGCTCGGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCA----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGA-CCAGCT---AA------C------------------TG---TGATCA---------AACAA-AGGCCTCGASizeHit CountTotal NormTotal
No Reads
droBia1
TGACGATCCAGCA--GTGAAA----GA--A--------------G----T----------------A----AATC----AGCTCGGGACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGA-CCAGCA---AA------G------------------TG---TGAAGC---------ACC---------CGASizeHit CountTotal NormTotal
No Reads
droTak1
TGAGGATCCAGCA--GTGAAA-A--AA--A--------------G----T----------------A----AAAC----AGTTCGGAACAG-TAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGA-CCAGCT---TA------T------------------TG---TGAACC---------AACCAAAGGTCTCGASizeHit CountTotal NormTotal
No Reads
droEug1
TGAAGATCAAGCA--GTGAAA-AC-AA--A------------------------------------------ATC----AGTTCGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAA-CCAGCT---AA------T------------------AG---TGAATC-------T-A-CCA-AAA-----CSizeHit CountTotal NormTotal
No Reads
dm3
TAAGGATCCCGCA--GTGAGA-AGCGA--A--------------G----T----------------CT----TA----AAGTTTGGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCT---AA------T------------------TG---TGAGCC---------ACCTA---------ASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...........................................................................................221372749.00372749000021172564461000000000000000060051440225181200010300040114040001000000000000000000000001184695024209914266539433475110189032812180016712949112661014102914117105000021300023000000000015031688119323100979702362411111562200000000040311805003514501002803008006210000003000001622020002001212040704401020010000442923611010100100110000166000010001301000019345311151486000007006272737500840231263190101165111022133522114311733139942011030
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT............................................................................................21186538.00865380000104392300000000000000001000000001074110100010800000130000200000000000000000000100086338059669620000000520800203140001394230023041750000000000000000000000007035092644536441714010131132010000020000004010010010000000010100150002001000000910040000001104041303505100000001020699201000001011000523100011014016100124441674435803221322162622379142700241431300101815611847212021341151138313002230
................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.............................................................................................2015469.0054690000000000000000000000100000000000389700000003060000000000000000000000000000000000004105000000000000000000000000002000000000000000000000000000471291791398900000000000000000000000000000000000000000002100000000000020000000000000102000100000000003629000010000000100201001010000000001800351201010000085524004001000000021002210000300022231280000300
....................................................................................................CGACAAACCTTGTTCGGTTTTG.......................................................................................................................................................2214921.00492100000021342000000000000000000012000116000000000000000000000000000000000000000001100074521860626150001020000003103704105812250067926000000000000000000000000050269311301555501000100000000000000007030000201100300000000000000000010001000000000000000000010522126300003728100000000000000000000000000010001000000000000000082600000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..........................................................................................2311848.00184800000015200000000000000000000000003600000000010000000100000000000000000000000000001516762414100000100300000000000128500170120000000000000000000000000182112482900010020000000000000000100000000000000000000000000000000000200000000000000000001010000000018100100000000000000000000000000000001020201000000000814100100000000100100000000000000000060000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...........................................................................................2211533.001533000000010000000000000000000000000060000000000000000000000000000000000000000000000143126000000000000000000000300000010000000000000100000000007345359110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010900000000000000000000000000000000000100000000000001311000000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTC..............................................................................................1911527.001527000000000000000000000000000000000045500000001000000000000000000000000000000000000008034400000000000000000000040003000000000000000000000000000288475129134000000000000000000000000000000000000000000000000000000000000000000000000000001000000000041400000000000001000000000000000000002000000000000000605600600000000000010010010010000000060000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..........................................................................................231970.00970000000240000000000000000000000000014000000000000000000000000000000000000000000000056105940100000000000000000000001000141020000000000000000000000005118128180100000000000000000000000000000000000000000000000000000000000000000100000000000000000000008100000000000000000000000000000000000000000000000000463200000000000000000000000000000000030000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTACTG........................................................................................251741.0074100000000000000000000000000000000007390000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...........................................................................................221516.005160000001310000000000000000000000000800000000000000000000000000000000000000000000004952214000000000000010000002100020020000000000000000000000001131471000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000373100000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...........................................................................................221438.004380000003310000000000000000000000000000000000000000000000000000000000000000000000002315235000004000000000000002300000010000000000000000000000006625823310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000520000000000000000000000000000000011000001000000000201400000000000000000000000000100100020000010
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..........................................................................................231426.0042600000000100000000000000000000000002200000000000000000000000000000000000000000000002737176000000001100000000221200020020000000000000000000000004353226400000000000000000000000000000000000000000000000000000000001000000000000000000000000000000760000000000000000000000000000000000000000000000000211100000000000000000000000000000000030000000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...........................................................................................201360.00360000000000000000000000000000000000010000000000000000000000000000000000000000000000058004000000000000000000000000000000000000000000000000000003362328100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000850000000000000000000000000000000000000000000000000227000000000000000000000000000000000020000000
....................................................................................................CGACAAACCTTGTTCGGTTTT........................................................................................................................................................211334.00334000000000000000000000000000000000010000000000000000000000000000000000000000000000403010000000000000000000000300000070000000000000000000000004910013707100000000000000000000100000000000100000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC............................................................................................211189.001890000000100000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000411137000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000148000000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCA.............................................................................................201178.0017800000000000000000000000000000000001770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...........................................................................................19192.0092000000000000000000000000000000000000000000000000000000000000000000000000000000000990030000000000000000000000000000000000000000000000000000011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCT............................................................................................19190.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011114000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000011000000000000000000000000000000000000000000000000061000000000000000000000000000000000000000000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...........................................................................................21189.008900000000000000000000000000000000000000000000000000000000000000000000000000000000013102500000000000000000000430002000000000000000000000000000173000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000
....................................................................................................CGACAAACCTTGTTCGGTTTTT.......................................................................................................................................................22188.008800000010000000000000000000000000000000000000000000000000000000000000000000000000074401200000000000000000000000000000000000000000000000000000981300000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT............................................................................................22172.00720000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000003700000000000000000000000000000000000000000000000000000000000000000000000000000002000000000002000000000000000000000000000000000002000000000000052200000001000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGT...............................................................................................18170.0070000000000000000000000000000000000000000000000000000000000000000000000000000000010116100100000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000032110000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG..........................................................................................23168.006800000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000002410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000100000000044100000000000000000000000010000000000000000
.....................................................................................................GACAAACCTTGTTCGGTTTTG.......................................................................................................................................................21163.0063000000020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000061124105000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................CCAGCACTGGGTAAAGTTTGTC..............................................................................................22160.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000700010000000000000000000000000000000000000000000000000000011313000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000022100000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT.........................................................................................24149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000001210500000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA...........................................................................................23149.004900000001000000000000000000000000000000000000000000000000000000000000000000000000011003300000000000000000000300001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026000000000000000000000000000000000000000000
....................................................................................................CGACAAACCTTGTTCGGTTT.........................................................................................................................................................20148.00480000000000000000000000000000000000420000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTG..............................................................................................19138.00380000000000000000000000000000000000380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA............................................................................................21137.003700000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000010000000
....................................................................................................................................................................TGGGTAAAGTTTGTCCTA...........................................................................................18135.00350000000000000000000000000000000000000000000000000000000000000000000000000000000003060100000000000000000000020000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
droSim2
TGAGGATCTAGTA--GTGCAA-AG-CA--A--------------G----T----------------CT----TA----AAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCT---AA------T------------------TG---TGAACC---------ACCAA---------ASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...........................................................................................22137772.00377721042115128481930317295197400000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT............................................................................................2111373.001373001100374401339260600000
....................................................................................................CGACAAACCTTGTTCGGTTTTG.......................................................................................................................................................221406.0040610380100001302000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..........................................................................................23148.00480000000018250500000
.....................................................................................................................................................................GGGTAAAGTTTGTCCTA...........................................................................................17137.0037000000006310000000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...........................................................................................20136.0036000000002780100000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.............................................................................................20133.0033000000002502600000
...................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...........................................................................................19130.00300000000011190000000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...........................................................................................21126.0026000100001690000000
......................................................................................................................................................................GGTAAAGTTTGTCCTA...........................................................................................16123.0023000000007160000000
....................................................................................................CGACAAACCTTGTTCGGTTTT........................................................................................................................................................21118.001800000000850500000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...........................................................................................22114.001400000000670100000
.......................................................................................................................................................................GTAAAGTTTGTCCTA...........................................................................................15113.0013000000003100000000
....................................................................................................................................................................TGGGTAAAGTTTGTCCTA...........................................................................................18112.001200000000570000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTC..............................................................................................19111.0011000001000001000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...........................................................................................2218.00800000000340100000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...........................................................................................2218.00800000000410300000
..............................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT............................................................................................2318.00800200000140100000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..........................................................................................2316.00600000000040200000
................................................................................................................................................................GCACTGGGTAAAGTTTGT...............................................................................................1816.00600000000420000000
.............................................................................................................................................................CCAGCACTGGGTAAAGTTTGTC..............................................................................................2215.00500000000410000000
....................................................................................................CGACAAACCTTGTTCGGTTTTGT......................................................................................................................................................2314.00400200000000200000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCT............................................................................................1914.00400000000210100000
.............................................................................................................................................................CCAGCACTGGGTAAAGTTTGTCCTA...........................................................................................2514.00400000000310000000
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA...........................................................................................2314.00400000000310000000
......................................................................................................................................................................GGTAAAGTTTGTCCT............................................................................................1513.00300000000120000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC............................................................................................2113.00300000000100200000
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT............................................................................................2213.00300000000020100000
...................................................................................................ACGACAAACCTTGTTCGGTTTT........................................................................................................................................................2212.00200200000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA............................................................................................2112.00200000000110000000
....................................................................................................CGACAAACCTTGTTCGGTTTTA.......................................................................................................................................................2211.00100100000000000000
................................................................................................................................................................GCACTGGGTAAAGTT..................................................................................................1511.00100000000100000000
....................................................................................................................................................................TGGGTAAAGTTTGTCCT............................................................................................1711.00100000000100000000
..............................................................................................................................................................CAGCACTGGGTAAAGTTTGTC..............................................................................................2111.00100000000100000000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAT..........................................................................................2211.00100000000010000000
....................................................................................................CGACAAACCTTGTTCGGT...........................................................................................................................................................1811.00100000000010000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG............................................................................................2111.00100100000000000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA............................................................................................2121.00200000000200000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..........................................................................................2311.00100000000000100000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCT............................................................................................2011.00100000000000100000
....................................................................................................CGACAAACCTTGTTC..............................................................................................................................................................1530.33100000000010000000
droSec2
TGAGCATCCAGCA--GTGAAA-AGCAA--T--------------G----T----------------CT----TA----AAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCT---AA------T------------------TG---TGAATC---------ACCAA---------ASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...........................................................................................2217841.0078416357493280
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT............................................................................................2112496.0024961722371106
................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.............................................................................................201146.00146001433
....................................................................................................CGACAAACCTTGTTCGGTTTTG.......................................................................................................................................................221106.00106201031
................................................................................................................................................................GCACTGGGTAAAGTTTGTC..............................................................................................19151.005101491
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..........................................................................................23133.003300321
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..........................................................................................23124.002400240
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT............................................................................................22112.001200120
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...........................................................................................20111.001100110
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..........................................................................................23110.001000100
....................................................................................................CGACAAACCTTGTTCGGTTTT........................................................................................................................................................2118.0080080
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...........................................................................................2217.0070070
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...........................................................................................2114.0043010
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC............................................................................................2114.0040040
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...........................................................................................2213.0030030
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...........................................................................................2213.0030030
..............................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT............................................................................................2313.0030030
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCC.............................................................................................2113.0030030
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCT............................................................................................1913.0030030
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCT............................................................................................2013.0030030
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG............................................................................................2113.0031020
....................................................................................................CGACAAACCTTGTTCGGTTTTGT......................................................................................................................................................2312.0020020
................................................................................................................................................................GCACTGGGTAAAGTTTGTCA.............................................................................................2012.0020020
....................................................................................................CGACAAACCTTGTTCGGTT..........................................................................................................................................................1912.0020020
....................................................................................................................................................................TGGGTAAAGTTTGTCCTA...........................................................................................1812.0020020
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA............................................................................................2112.0020020
..............................................................................................................................................................CAGCACTGGGTAAAGTTTGTCC.............................................................................................2211.0010010
....................................................................................................CGACAAACCTTGTTCGGTTTTGC......................................................................................................................................................2311.0010010
....................................................................................................CGACAAACCTTGTTCGGT...........................................................................................................................................................1811.0010010
.............................................................................................................................................................CCAGCACTGGGTAAAGTTTGT...............................................................................................2111.0010010
.....................................................................................................GACAAACCTTGTTCGGTTTTG.......................................................................................................................................................2111.0010010
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAA..........................................................................................2211.0010010
................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA............................................................................................2121.0020020
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTC...........................................................................................2311.0010010
..................................................................................................................................................................ACTGGGTAAAGTTTGTCC.............................................................................................1811.0010010
...................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...........................................................................................1911.0010010
.................................................................................................................................................................CACTGGGTAAAGTTTGTCC.............................................................................................1911.0010010
...............................................................................................................................................................AGCACTGGGTAAAGTTTGT...............................................................................................1911.0010010
................................................................................................................................................................GCACTGGGTAAAGTTTGT...............................................................................................1811.0010010
droYak3
TGATGATCCAGCA--GTGAAA-ACAAA--AGTATCAA----------------------------A--GC---A----AAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCAGCCAA------G------------------TG---TGAACC---------ATC----------AASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...........................................................................................2211191.001191037694180100000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT............................................................................................2111020.001020028361800200000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC............................................................................................211228.002280022710000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.............................................................................................20194.0094008770000000
....................................................................................................CGACAAACCTTGTTCTGTTTTG.......................................................................................................................................................22128.0028002800000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..........................................................................................2318.00800350000000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...........................................................................................2116.00602400000000
....................................................................................................CGACAAACCTTGTTCTGTTTTGCC----------------.....................................................................................................................................2416.00600600000000
....................................................................................................CGACAAACCTTGTTCTGTTTT........................................................................................................................................................2115.00500410000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTC..............................................................................................1915.00500230000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...........................................................................................2214.00400310000000
...............................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT............................................................................................2214.00400310000000
................................................................................................TATACGACAAACCTTGTTCTGT...........................................................................................................................................................2213.00300300000000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...........................................................................................2013.00300210000000
.................................................................................................ATACGACAAACCTTGTTCTGTT..........................................................................................................................................................2212.00200200000000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCT............................................................................................1912.00200200000000
....................................................................................................CGACAAACCTTGTTCTGTTT.........................................................................................................................................................2012.00200200000000
...................................................................................................ACGACAAACCTTGTTCTGTTTTGCC----------------.....................................................................................................................................2512.00200200000000
....................................................................................................CGACAAACCTTGTTCTGT...........................................................................................................................................................1812.00200110000000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCT............................................................................................2012.00200200000000
..................................................................................................................................................................ACTGGGTAAAGTTTGTCCC............................................................................................1912.00200200000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...........................................................................................2212.00200110000000
.................................................................................................ATACGACAAACCTTGTTCTGTC..........................................................................................................................................................2211.00100100000000
..................................................................................................TACGACAAACCTTGTTCTGTTTT........................................................................................................................................................2311.00100100000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG............................................................................................2111.00100100000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..........................................................................................2311.00100100000000
.......................................................................................................................................................................GTAAAGTTTGTCCTATAATCC.....................................................................................2111.00100100000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTCC..........................................................................................2311.00100100000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..........................................................................................2311.00100000010000
......................................................................................................................................................................................TAATCCCGAAAC--GACGA-CCAGCAGC...............................................................2511.00100100000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...........................................................................................2211.00100010000000
..................................................................................................TACGACAAACCTTGTTCTGTTTTGC......................................................................................................................................................2511.00100100000000
...................................................................................................................................................TA------G-CCAGCACTGGGTAAAGTTTGTCCTA...........................................................................................2811.00100100000000
................................................................................................TATACGACAAACCTTGTTCTGC...........................................................................................................................................................2211.00100100000000
....................................................................................................CGACAAACCTTGTTCTGTTTTGT......................................................................................................................................................2311.00100100000000
..............................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCC............................................................................................2311.00100100000000
...................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...........................................................................................1911.00100100000000
....................................................................................................CGACAAACCTTGTTCTGTTTTGC......................................................................................................................................................2311.00100100000000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCC............................................................................................2011.00100100000000
....................................................................................................................................................................TGGGTAAAGTTTGTCCTA...........................................................................................1811.00100100000000
....................................................................................................CGACAAACCTTGTTCTGC...........................................................................................................................................................1830.33100100000000
droEre2
TGAGGATCCCGCA--GTGAAA-AGTAA--A--------------G----T----------------A----TACG----AGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGA-CCAGCC---AA------T------------------TG---TGAACC---------CACCA---------ASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...........................................................................................221612.00612141850384110
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT............................................................................................211280.0028021710187100
................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.............................................................................................20119.00195806000
....................................................................................................CGACAAACCTTGTTCGGTTTTG.......................................................................................................................................................22114.00145207000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC............................................................................................21114.001401400000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...........................................................................................2116.0066000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...........................................................................................2215.0050104000
................................................................................................................................................................GCACTGGGTAAAGTTTGTC..............................................................................................1915.0050104000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..........................................................................................2314.0043001000
.................................................................................................................................................................CACTGGGTAAAGTTTGTCCT............................................................................................2014.0044000000
....................................................................................................CGACAAACCTTGTTCGGTTTT........................................................................................................................................................2114.0041101010
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...........................................................................................2213.0031002000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..........................................................................................2312.0021100000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG..........................................................................................2312.0021001000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA............................................................................................2112.0020101000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..........................................................................................2312.0020002000
...................................................................................................................................................................CTGGGTAAAGTTTGTCCT............................................................................................1811.0010100000
................................................................................................................................................................GCACTGGGTAAAGTTTGT...............................................................................................1811.0011000000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT.........................................................................................2411.0010001000
....................................................................................................CGACAAACCTTGTTCGGTTTTGT......................................................................................................................................................2311.0010001000
..................................................................................................TACGACAAACCTTGTTCGGTTT.........................................................................................................................................................2211.0010100000
..................................................................................................TACGACAAACCTTGTTCGGTTTTG.......................................................................................................................................................2411.0010001000
....................................................................................................CGACAAACCTTGTTCGGTTTTT.......................................................................................................................................................2211.0010001000
....................................................................................................CGACAAACCTTGTTCGGTTT.........................................................................................................................................................2011.0011000000
........................................................................................................................................................................TAAAGTTTGTCCTATAATCCCG...................................................................................2211.0010001000
................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...........................................................................................2211.0011000000

Generated: 10/20/2015 at 07:36 PM