ID:

dmo-mir-308

 Coordinate:

scaffold_6496:11229072-11229133 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.5 -32.5 -32.3

Flybase annnotation

intron [Dmoj\GI20452-in]; pre_miRNA [Dmoj\mir-308-RM]; utr3 [utr3_minus_3068]; miRNA [Dmoj\miR-308-RA]

No Repeatable elements found

Sense Strand Reads

TTCTAAATTTGTTAAGATTTTAATTTGAATTATTTGAACACATTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTATTATAAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGAAACAACAACAAATTGAATTAAAATCATCTGCTAGCTATC

*************************************...((.((((((.(((((((((((.(((((((.((((.((........)).)))).))))))).))))))))))).)))))).))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo

 V041

embryo

 V110

male body		 V056

head

 V049

head
..........................................................................................AATCACAGGATTATACTGTGA................................................... 21 0 1 5405.00 5405 2604 2415 163 26 116 81
....................................................CGCAGTATATTTTTGTGTTTTG........................................................................................ 22 0 1 1392.00 1392 253 53 388 412 167 119
..........................................................................................AATCACAGGATTATACTGT..................................................... 19 0 1 950.00 950 667 20 4 81 94 84
..........................................................................................AATCACAGGATTATACTGTG.................................................... 20 0 1 201.00 201 182 9 3 0 0 7
..........................................................................................AATCACAGGATTATACTGTGAG.................................................. 22 0 1 179.00 179 136 35 2 2 3 1
...........................................................................................ATCACAGGATTATACTGTGA................................................... 20 0 1 127.00 127 125 2 0 0 0 0
..........................................................................................AGTCACAGGATTATACTGTGA................................................... 21 1 1 76.00 76 0 75 0 0 1 0
..........................................................................................AACCACAGGATTATACTGTGA................................................... 21 1 1 58.00 58 0 58 0 0 0 0
.........................................................................................CAATCACAGGATTATACTGTGA................................................... 22 1 1 53.00 53 7 46 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTT........................................................................................ 22 1 1 51.00 51 0 0 21 0 7 23
..........................................................................................AATTACAGGATTATACTGTGA................................................... 21 1 2 45.50 91 0 91 0 0 0 0
...........................................................................................ATCACAGGATTATACTGT..................................................... 18 0 1 40.00 40 40 0 0 0 0 0
.........................................................................................AAATCACAGGATTATACTGTGA................................................... 22 0 1 37.00 37 8 29 0 0 0 0
.....................................................GCAGTATATTTTTGTGTTTTG........................................................................................ 21 0 1 32.00 32 24 1 2 5 0 0
..........................................................................................AATCACAGGATTATACTGTGAA.................................................. 22 1 1 27.00 27 22 5 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGAGC................................................. 23 1 1 26.00 26 24 2 0 0 0 0
..........................................................................................TATCACAGGATTATACTGTGA................................................... 21 1 1 22.00 22 0 22 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTT......................................................................................... 21 0 1 20.00 20 4 1 8 1 1 5
...........................................................................................ATCACAGGATTATACTGTGAGT................................................. 22 0 1 18.00 18 12 5 1 0 0 0
..........................................................................................AATCACAGGATTATACTG...................................................... 18 0 1 16.00 16 1 10 0 0 4 1
..........................................................................................ATTCACAGGATTATACTGTGA................................................... 21 1 1 16.00 16 1 15 0 0 0 0
..........................................................................................AATCACAGGATTCTACTGTGA................................................... 21 1 1 15.00 15 0 14 1 0 0 0
..........................................................................................AATCACAGGATTATACTGTGAGA................................................. 23 1 1 13.00 13 7 6 0 0 0 0
........................................................................................TCAATCACAGGATTATACTGTGA................................................... 23 2 1 12.00 12 0 12 0 0 0 0
....................................................CTCAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 11.00 11 0 10 0 0 1 0
..........................................................................................AATCACAGGATGATACTGTGA................................................... 21 1 1 11.00 11 11 0 0 0 0 0
.........................................................................................TAATCACAGGATTATACTGTGA................................................... 22 1 1 11.00 11 9 2 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTT.......................................................................................... 20 0 1 11.00 11 3 1 1 4 0 2
..........................................................................................AATCACAGGATTATACTGC..................................................... 19 1 1 10.00 10 0 8 0 0 1 1
.............................................................................................CACAGGATTATACTGTGAG.................................................. 19 0 1 9.00 9 9 0 0 0 0 0
............................................................................................TCACAGGATTATACTGTGA................................................... 19 0 1 9.00 9 9 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTTA................................................... 21 1 1 8.00 8 0 4 1 0 1 2
..........................................................................................AATCACAGGATTATACTGTGAGT................................................. 23 0 1 8.00 8 6 1 0 0 1 0
..........................................................................................AATCACAGGATGATACTGT..................................................... 19 1 1 8.00 8 8 0 0 0 0 0
....................................................CGAAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 8.00 8 1 5 1 0 1 0
....................................................CGCAGTATATTTTTGTGTT........................................................................................... 19 0 1 8.00 8 1 0 0 5 2 0
..........................................................................................AATCACAGGATTATACTGTGAAA................................................. 23 2 1 7.00 7 7 0 0 0 0 0
............................................................................................TCACAGGATTATACTGTGAG.................................................. 20 0 1 7.00 7 7 0 0 0 0 0
..........................................................................................AATCACAGGATAATACTGTGA................................................... 21 1 1 7.00 7 6 1 0 0 0 0
..........................................................................................AATCACAGGATCATACTGTGA................................................... 21 1 1 7.00 7 5 2 0 0 0 0
.......................................................................................ATCAATCACAGGATTATACTGTGA................................................... 24 3 1 7.00 7 0 7 0 0 0 0
..........................................................................................AATCACAGGATTATACTGCGA................................................... 21 1 1 7.00 7 2 4 0 0 0 1
...........................................................................................ATCACAGGATTATACTGTGAGA................................................. 22 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................ATCACAGGATTATACTGTG.................................................... 19 0 1 7.00 7 7 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTAA................................................... 21 1 1 6.00 6 1 4 1 0 0 0
..........................................................................................GATCACAGGATTATACTGTGA................................................... 21 1 1 6.00 6 3 2 0 1 0 0
....................................................CGCAGGATATTTTTGTGTTTTG........................................................................................ 22 1 1 6.00 6 0 1 2 0 2 1
..........................................................................................AATCTCAGGATTATACTGTGA................................................... 21 1 1 5.00 5 1 4 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTGT....................................................................................... 23 0 1 5.00 5 1 0 2 2 0 0
..........................................................................................AATCACAGGGTTATACTGTGA................................................... 21 1 1 5.00 5 0 3 0 0 0 2
..........................................................................................AATCACAGGATTATACTGTGT................................................... 21 1 1 5.00 5 1 1 0 0 2 1
..........................................................................................AATCACAGGATTATATTGTGA................................................... 21 1 1 5.00 5 1 3 0 0 1 0
..............................................................................................ACAGGATTATACTGTGAG.................................................. 18 0 1 5.00 5 5 0 0 0 0 0
....................................................CGCTGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 5.00 5 0 4 1 0 0 0
......................................................CAGTATATTTTTGTGTTTTG........................................................................................ 20 0 1 4.00 4 3 1 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGAT.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................AATCACAGGTTTATACTGTGA................................................... 21 1 1 4.00 4 0 3 0 0 0 1
....................................................CGCAGTATATTTTTGCGTTTTG........................................................................................ 22 1 1 4.00 4 0 0 0 2 1 1
..........................................................................................AATCACAGCATTATACTGTGA................................................... 21 1 1 4.00 4 0 4 0 0 0 0
...........................................................................................ATCACAGGATTATACTGTGAG.................................................. 21 0 1 4.00 4 4 0 0 0 0 0
....................................................CGCAGTATATTTTTTTGTTTTG........................................................................................ 22 1 1 4.00 4 0 1 1 0 1 1
..........................................................................................AATCACAGGATTATACTGTGC................................................... 21 1 1 4.00 4 1 0 2 0 1 0
..........................................................................................AATCACAGGATTATACTGTGAC.................................................. 22 1 1 4.00 4 0 4 0 0 0 0
.......................................................................................AGCAATCACAGGATTATACTGTGA................................................... 24 3 1 4.00 4 2 2 0 0 0 0
....................................................CGCAGTGTATTTTTGTGTTTTG........................................................................................ 22 1 1 4.00 4 0 1 2 0 1 0
....................................................CGCGGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 4.00 4 1 0 2 0 1 0
........................................................................................TGAATCACAGGATTATACTGTGA................................................... 23 2 1 4.00 4 1 3 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTGC....................................................................................... 23 1 1 4.00 4 3 0 0 1 0 0
..........................................................................................AATCACAGGATTATACCGTGA................................................... 21 1 1 4.00 4 2 2 0 0 0 0
.........................................................................................GAATCACAGGATTATACTGTGA................................................... 22 1 1 4.00 4 3 1 0 0 0 0
..........................................................................................AATCACAGGATTATACTTTGAG.................................................. 22 1 1 4.00 4 0 4 0 0 0 0
..........................................................................................AATCACAGGATTATACTGA..................................................... 19 1 1 4.00 4 4 0 0 0 0 0
....................................................CGCAGTATATTTTTGTTTTTTG........................................................................................ 22 1 1 4.00 4 1 0 0 0 0 3
..........................................................................................AATCACGGGATTATACTGTGA................................................... 21 1 2 3.50 7 2 5 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGG................................................... 21 1 1 3.00 3 1 2 0 0 0 0
....................................................CGCAGTATCTTTTTGTGTTTTG........................................................................................ 22 1 1 3.00 3 0 0 1 0 0 2
..........................................................................................AATCACAGGATTATCCTGTGA................................................... 21 1 1 3.00 3 0 2 0 0 0 1
..........................................................................................AGTCACAGGATTATACTGTGAG.................................................. 22 1 1 3.00 3 0 3 0 0 0 0
....................................................CGCAGTATATTTTTGTGT............................................................................................ 18 0 1 3.00 3 0 0 0 1 1 1
..........................................................................................AATCACAGGAATATACTGTGA................................................... 21 1 1 3.00 3 1 2 0 0 0 0
....................................................CGCAGGATATTTTTGTGTTTTT........................................................................................ 22 2 1 3.00 3 0 0 3 0 0 0
.............................................................................................CACAGGATTATACTGTGA................................................... 18 0 1 3.00 3 3 0 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTC......................................................................................... 21 1 1 3.00 3 1 0 1 1 0 0
..........................................................................................TATCACAGGATTATACTGTGAG.................................................. 22 1 1 3.00 3 0 3 0 0 0 0
....................................................CACAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 3.00 3 0 2 1 0 0 0
..........................................................................................AATCACAGGATTATACTGGGA................................................... 21 1 1 3.00 3 1 1 0 0 1 0
....................................................CGCAGTATATTTTTGTGTTTCC........................................................................................ 22 2 1 3.00 3 0 1 0 2 0 0
....................................................CGCCGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 3.00 3 0 0 1 0 0 2
..........................................................................................AATCACAGGATTATACTATGA................................................... 21 1 1 3.00 3 0 3 0 0 0 0
...........................................................................................AGCACAGGATTATACTGTGAGT................................................. 22 1 1 2.00 2 0 2 0 0 0 0
..........................................................................................AATCACAGGATTCTACTGT..................................................... 19 1 1 2.00 2 0 1 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTGA....................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0
..........................................................................................AATCACAGGATTATACTCC..................................................... 19 2 1 2.00 2 2 0 0 0 0 0
....................................................CCCAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 2.00 2 0 0 1 1 0 0
......................................................................................ATCAAATCACAGGATTATACTGTGA................................................... 25 0 1 2.00 2 0 2 0 0 0 0
........................................................................................GGAATCACAGGATTATACTGTGA................................................... 23 2 1 2.00 2 1 1 0 0 0 0
....................................................TGCAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 2.00 2 0 1 1 0 0 0
..........................................................................................AATCACAGGATTATAGTGTGA................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGG..................................................... 19 1 1 2.00 2 0 0 0 0 1 1
.........................................................................................GAATCACAGGATTATACTGTGAG.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTTTGA................................................... 21 1 1 2.00 2 0 2 0 0 0 0
..........................................................................................AATCATAGGATTATACTGTGA................................................... 21 1 1 2.00 2 0 1 0 1 0 0
........................................................................................GAAATCACAGGATTATACTGTGA................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................AAGCACAGGATTATACTGTGA................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................ATCACAGGATTATACTGTGAGC................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...................................................TCGCAGTATATTTTTGTGTTTT......................................................................................... 22 0 1 2.00 2 1 0 0 0 0 1
..............................................................................................ACAGGATTATACTGTGAGA................................................. 19 1 1 2.00 2 2 0 0 0 0 0
....................................................CGCAGTATACTTTTGTGTTTTG........................................................................................ 22 1 1 2.00 2 1 0 1 0 0 0
..........................................................................................AACCACAGGATTATACTGT..................................................... 19 1 1 2.00 2 0 0 0 0 1 1
....................................................CGCAGCATATTTTTGTGTTTTG........................................................................................ 22 1 2 2.00 4 0 0 2 0 2 0
.........................................................................................CAATCACAGGATTATACTGTGAG.................................................. 23 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................AATCACAGGCTTATACTGT..................................................... 19 1 1 2.00 2 0 0 0 0 0 2
..........................................................................................AATCGCAGGATTATACTGTGA................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................AATCACAGGATTATACCGTGAG.................................................. 22 1 1 2.00 2 1 0 0 0 0 1
....................................................AGCAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 2.00 2 0 0 1 0 0 1
.........................................................................................CACTCACAGGATTATACTGTGA................................................... 22 2 1 2.00 2 0 2 0 0 0 0
.........................................................................................CAATCACAGGATTATACTGT..................................................... 20 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................AATCGCAGGATTATACTGT..................................................... 19 1 1 2.00 2 1 0 0 0 1 0
..........................................................................................AATCACAGGATTATACTGAG.................................................... 20 1 1 2.00 2 0 2 0 0 0 0
..........................................................................................CATCACAGGATTATACTGTGA................................................... 21 1 1 2.00 2 0 2 0 0 0 0
....................................................CGCAGTATATTTTTGTGGTTTG........................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0
..........................................................................................AATCACAGGATTATACTGTA.................................................... 20 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................AATCAGAGGATTATACTGTGA................................................... 21 1 1 2.00 2 0 1 0 0 1 0
.........................................................................................TAATCACAGGATTATACTGTG.................................................... 21 1 1 2.00 2 2 0 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTGTC...................................................................................... 24 1 1 2.00 2 0 0 0 2 0 0
....................................................CGCAGTATATTTTTGTATTTTG........................................................................................ 22 1 1 2.00 2 0 0 1 0 0 1
....................................................CGCAGTATATTTTTGTGCTTTG........................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0
........................................................GTATATTTTTGTGTTTTG........................................................................................ 18 0 1 2.00 2 1 0 0 1 0 0
............................................................................................TCACAGGATTATACTGTGAGA................................................. 21 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................AACTACAGGATTATACTGTGA................................................... 21 2 2 1.50 3 0 3 0 0 0 0
....................................................CGCAGTATATTGTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
....................................................CTCAGTATATTTTTGTGTTTTGT....................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGAATTATACTGTGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AGTCACAGGATTATACTGTGAGT................................................. 23 1 1 1.00 1 0 1 0 0 0 0
........................................................................................CAAATCACAGGATTATACTGTGA................................................... 23 0 1 1.00 1 0 1 0 0 0 0
........................................................................................GTAATCACAGGATTATACTGTGA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TAATCACAGGATTATACTGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................GCAGTATATTTTTGTGTTTTC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................AAATCACATGATTATACTGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................AAATCACACGATTATACTGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATTACAGGATTATACTGTAA................................................... 21 2 2 1.00 2 0 2 0 0 0 0
.....................................................GCAGTATATTTTTGTGTTT.......................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
....................................................TGCAGTATATTTTTCTGTTTTG........................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................AATCACAGCATTATACTGTGAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTATTCTGTGA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGAGTC................................................ 24 1 1 1.00 1 1 0 0 0 0 0
......................................................................................ATCAAATCACAGGATTATACTGTGG................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTATACCGAG.................................................... 20 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................GATCACAGGATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 0 0 1
..........................................................................................AATCACAGGATTCTACTGTGAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTATACTGAGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACGGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
................................................................................................AGGATTATACTGTGAGTT................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.................................TTGAACACATTCGATGTCT.............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................CAATCACAGGATTATACTGTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGTATATTTGTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1
....................................................CGCAGGATATTTTTGTGTGTTG........................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................AATCACAGTATTATACTGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATCACAGGATTGTACTGTGA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTA........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATTATACAGTGA................................................... 21 1 1 1.00 1 0 0 0 0 1 0
....................................................CTAAGTATATTTTTGTGTTTTG........................................................................................ 22 2 2 1.00 2 0 2 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTGCT...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGTATATTTTTATGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................AGTCACAGGATTATACTTTGA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACAGGATTATACTGTG.................................................... 18 0 1 1.00 1 1 0 0 0 0 0
......................................................CGGTATATTTTTGTGTTTTG........................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0
...................................................ACGCAGTATATTTTTGTGTTTTG........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
................................TTTGAACACATTCGATGTCT.............................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTATACTAC..................................................... 19 2 2 1.00 2 0 2 0 0 0 0
..........................................................................................AATCACAGGATTATAATGTGA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................GGCAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................AATCGCAGGATGATACTGT..................................................... 19 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................AGTCACAGGATTCTACTGTGA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTGTACTGTGA................................................... 21 1 1 1.00 1 0 0 0 0 1 0
....................................................CGCAGTATATTTTTGTGTCTTG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TCACAGGATTATACTGTGAGT................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATGATACTGTG.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTA...................................................... 18 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGTA.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
....................................................CGCAATATATTTTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................ACTCACAGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGAGCC................................................ 24 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCAGAGGGTTATACTGTGA................................................... 21 2 1 1.00 1 0 0 1 0 0 0
....................................................CGCAGTATATTTTTGCGTTTTT........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................AGTTACAGGATTATACTGTGA................................................... 21 2 2 1.00 2 0 2 0 0 0 0
..........................................................................................AATCACAGGTTTATACTG...................................................... 18 1 1 1.00 1 0 0 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTGG....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................CACAATCACAGGATTATACTGTGAG.................................................. 25 3 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGTATATTTTTGTGTGTTG........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................AATCACAGGATTATGCTGTGA................................................... 21 1 1 1.00 1 0 0 0 0 0 1
.........................................................................................AAATCACAGGATTATACTGTGAG.................................................. 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................GCAGTATATTTTTGTGTTTTGTTT..................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGTTTATCCTGTGA................................................... 21 2 1 1.00 1 0 0 0 0 0 1
.......................................................................................AATAATCACAGGATTATACTGTGA................................................... 24 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................TCAAATCACAGGCTTATACTG...................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................AATCGCAGGATTATACTGTTA................................................... 21 2 1 1.00 1 0 0 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTGCC...................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................ATCACAGGATTATACTGTGAGAA................................................ 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTT.................................................... 20 1 1 1.00 1 0 0 0 0 1 0
....................................................CGCAGTATATGTTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................AATCACAGGCTTTTACTGGGA................................................... 21 3 1 1.00 1 0 0 1 0 0 0
..........................................................................................AATCACAGGATGAGACTGT..................................................... 19 2 1 1.00 1 0 0 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTTTG...................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................AATCACAGGATTATACTGTGAAAA................................................ 24 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................GCGAATCACAGGATTATACTGTGAG.................................................. 25 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................ATAAATCACAGGATTATACTGTGA................................................... 24 2 1 1.00 1 0 1 0 0 0 0
....................................................CGAAGTATATTTTTGTGTTTTGC....................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
....................................................CGCAGTATGTTTTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
..................................TGAACACATTCGATGTCT.............................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
...................................................TCGCAGTATATTTTTGTGTTTTG........................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
....................................................CGGAGTATATTTTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................ACTCACCGGATTATACTGT..................................................... 19 2 2 1.00 2 0 0 0 0 1 1
..........................................................................................AATCACAGGATTCTAATGTGA................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................AATCACCGGAGTATACTGTGA................................................... 21 2 1 1.00 1 0 0 0 0 0 1
...........................................................................................ATCACAGGATTATACTGTAA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGGATAGTTTTGTGTTTTG........................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................AATCACAGGGTTATACTGTG.................................................... 20 1 1 1.00 1 0 0 0 0 0 1
....................................................CGCACTATATTTTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
....................................................CGCAGTATATTTTTGTGTC........................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................AATCACAGGATGATACGGTGA................................................... 21 2 1 1.00 1 0 0 0 0 1 0
....................................................CGCAGTATATTTTTGTGTTC.......................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................AATTACAGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACAGAATTATACTGTGA................................................... 19 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTATACTTC..................................................... 19 2 2 1.00 2 1 1 0 0 0 0
..........................................................................................AATCACCGGATTATACTGTGA................................................... 21 1 1 1.00 1 0 0 0 0 0 1
..........................................................................................AACCATAGGATTATACTGTGA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...................................................TCGCAGTATATTTTTGTGTTT.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................CAGGATTATACTGTGAGA................................................. 18 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CAGGATTATACTGTGAGT................................................. 18 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................AAAACACAGGATTATACTGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................AATTATTTGAACACATTCGATGTCT.............................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCTCAGGATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 0 0 1
..........................................................................................AATCACAGGAGTATACTGGGA................................................... 21 2 1 1.00 1 0 0 0 0 0 1
....................................................CGCAGTATATTTTCGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................AGCACAGGATTATACTGTGA................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCCCCGGATTATACTGTG.................................................... 20 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................AGTCACAGGATTATACTGTGAAA................................................. 23 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................TATCACAGGATTATACTGTGAGA................................................. 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATCACAAGATTATACTGT..................................................... 18 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................CAGGATTATACTGTGAGC................................................. 18 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................ACCAATCACAGGATTATACTGTGA................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGACTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 0 0 1
........................................................................................ACAATCACAGGATTATACTGTGA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................AAATCACAGGATTATACTGT..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
........................................................................................ATAATCACAGGATTATACTGTGA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................AGTATATTTTTGTGTTTTG........................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGTATATTTTTGCGGTTTG........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................AATCACAGGATTATAATGT..................................................... 19 1 1 1.00 1 0 0 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTCC....................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACAGGATTATACTGTGAGA................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGACTATACTGTGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGCACAGGATTATACTTTGAGT................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCGCAGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................GTTCGCAGTATATTTTTGTGTTTTG........................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACCACAGGATTATACTGT..................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACAGGATTATACTGTGAC.................................................. 19 1 1 1.00 1 0 1 0 0 0 0
....................................................CGCAGTATATTTCTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................AATCACAGGATTATACTTTG.................................................... 20 1 1 1.00 1 0 0 0 0 1 0
....................................................CGCAGTATATTTTTGTGTTGTG........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
....................................................CGCAGTATATTGTGGTGTTTTG........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................AATCACTGGATTATACTGTGA................................................... 21 1 1 1.00 1 0 0 0 0 0 1
.........................................................................................AGATCACAGGATTATACTGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................CGCAGTATACTTTTGTCTTTTG........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................AATCACAGGATCATACTGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AAGCACAGGGGTATACTGTGA................................................... 21 3 1 1.00 1 0 0 1 0 0 0
....................................................CTCAGTATATTTTTGTGTTTT......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................CTAATCACAGGATTATACTGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTGTT...................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................AACAATCACAGGATTATACTGTGA................................................... 24 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGGG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAGGATAATACTGT..................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCAAAGGATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 0 1 0
....................................................CGCAGTATATTTTTGGGTTTTG........................................................................................ 22 1 2 1.00 2 2 0 0 0 0 0
....................................................CGCAGTATATTTTTGTGCTTTC........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1
....................................................CGGAGTTTATTTTTGTGTTTTG........................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................AATCACAGAATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 0 1 0
.....................................................GCAGTATATTTGTGTGTTTTG........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATCACAGGATTATACGGTGA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................CAAAAAATCACAGGATTATACTGTG.................................................... 25 3 1 1.00 1 1 0 0 0 0 0
....................................................CGCAGTAGATTTTTGAGTTTTG........................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................CCGAATCACAGGATTATACTGTGA................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.................................................AAACGCAGTATATTTTTGTGTTTTG........................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0
.....................................................GCAGTATATTTTTGTGTTTT......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TATTACAGGATTATACTGTGA................................................... 21 2 2 1.00 2 0 2 0 0 0 0
..........................................................................................AGTCACAGGATTATATTGTGA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTATACTGTGATCGA............................................... 25 3 1 1.00 1 1 0 0 0 0 0
......................................................................................CTGCAATCACAGGATTATACTGTGA................................................... 25 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................AATCACAAGATTATACTGTGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AGTCACAGGATTATACTGTG.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGGATTTTACTGT..................................................... 19 1 1 1.00 1 0 0 0 0 0 1
..........................................................................................AATAACAGGATTAGACTGTGA................................................... 21 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................AATCACAGGATTAGACTGTGA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
....................................................CGCAGTATATTCTTGTGTTTTG........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
....................................................CATAGTATATTTTTGTGTTTTG........................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................AATCACAGCCTTATACTGTGA................................................... 21 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................AGTCACAGGATTCTACTGTGG................................................... 21 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................AATCACAGCATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 0 0 1
....................................................CGCAGTATATTTTTGTTTTTTT........................................................................................ 22 2 3 0.67 2 0 0 0 0 1 1
....................................................CGCAGTATATTTTTTTGTTTTT........................................................................................ 22 2 3 0.67 2 0 0 0 0 0 2

Anti-sense strand reads

AAGATTTAAACAATTCTAAAATTAAACTTAATAAACTTGTGTAAGCTACAGAGCGTCATATAAAAACACAAAACAAATAATATTTTTAGTTTAGTGTCCTAATATGACACTCAATAGCCGACTTTGTTGTTGTTTAACTTAATTTTAGTAGACGATCGATAG

************************************...((.((((((.(((((((((((.(((((((.((((.((........)).)))).))))))).))))))))))).)))))).))....************************************* 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:11229022-11229183 + dmo-mir-308 Known_mirbase TTCTAAAT--------TTGTTAA----GAT---T--TTAATT-------------------------TGAATTATT---TG----------A--A---CACA-TTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TATAAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGAAACA---ACAACAA---ATTG----A---------------------------------ATTAAA-A----TCATCTGCTAGCTATC
droVir3 scaffold_12875:17605264-17605415 + dvi-mir-308 Known_mirbase TTTATT--------------------TATTGTTATTTTAATT-------------------------------------TGTAG---------CCAA-CGCA-TTCGATGTCTCGCAGTATACTTTTGTGTTTTGTTT-AT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGTAGCA---ACAACAA---AAAT--CCATTT--T------------------A-GAC----------A-----------CAA-AGCTTT
droGri2 scaffold_15245:14076201-14076393 - dgr-mir-308 Known_mirbase TCAGCTATACATTATT-------TAGAAGTGTTT--TCAATTTGATATACATATATAGATAGATC-----------TGTTAA-G---------CCCACCA-CTGTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTATT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGCCAGCAGCA---AGGACAACCAAATT--TTAATT-----------------------T--------------AC-----CCAAAT-ACAATT
droWil2 scf2_1100000004513:1860898-1861065 + dwi-mir-308 Known_mirbase CTGGATAC--------TGATTAA----GGC---T--CTCGTC-------------------------GAC---------------------CACAGA-CTATTCTT-GCGTCTCGCAGTATATTTTTGTGTTTTGTTC-AATTTGTCAACTCAAATCACAGGATTATACTGTGAGCTGCGAAATGGAA-A---TCCACGC---AACC-------ATT-----TTAAAATCAAA---TTGACT-----TAAA-T--------GTC---TTCTCC
dp5 3:16336953-16337125 - dps-mir-308 Known_mirbase TCAGAACA--------TCTCCAA----AGTGTTT--TCC--------------------TAGGTG-----------TGCCGA-A----AG-AAGC---GGCGTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCTA---TCAAGAG---AGTG--TGAACGGAACCCAAG---------TGT--ATT----------T---------------TGTATT
droPer2 scaffold_4:426212-426383 + dpe-mir-308 Known_mirbase TCAGAACA--------TCTCCAA----TGTGTTT--TCC--------------------TAGGTG-----------TGCCGA-A----AG-AATC---GGCGTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCTA---TCAGAGA----GTG--TGAAAGGAACCCAAG---------TGT--ATT----------T---------------TGTATT
droAna3 scaffold_13266:5819921-5820098 + dan-mir-308 Known_mirbase CACTGAAA--------TAAACAA----GGTGATA--TCACTCTA------------------CC----------------------------ATC---CATGTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GG-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTCA---GCAGCTG---AAACAGTGCATAATT----AAAGAATCCTA---TTT--------------GCCCAACTATGCT---AGAT
droBip1 scf7180000396372:434896-435051 + TACTGAAC--------TAAACAA----GGTGATA--TCACTCCT------------------AC----------------------------ATC---CATGTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTCA---GCAGCCG---AATA--TCAGCAATT------------------C-AAT----------A---------------TCTAAT
droKik1 scf7180000302385:233908-234071 - TCCCGTCCCC---CCC-------GCAAAGTGCTT--CCTCTC-------------------------------------CGA------AG-AACC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TGTTTGAAAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAACAG---CAGC--AGCATAATT------------------A-GCCTTTA----------------------ATTATA
droFic1 scf7180000453948:328413-328564 + A------------------------GAAGTGTTA--TCC-----------------------ACA-----------TCCCGAAG----AG-AACC---CACGTCTCGACGACTCGCAGTATATTTTTGTGTTTTGTTG-GT-TTTGGAACTCAAATCACAGGATTATACTGTGAGCTGACAAGCGTGCCA---GCAACCA---AAGA--AATCTAAAA------------------CGGTTT-------------------------GGAATT
droEle1 scf7180000491349:772075-772243 + CTCCG------------------CAAAAGTGTTT--GC-------------------------CA-----------TCCCGGAG----AG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAGCCA---AGAG--TGAATGGAA------------------CTGGTTTGAGCAACA-T----CCACC-------TGCT
droRho1 scf7180000777200:420703-420867 - TTA--------------------TAGAAGTGTGT--TC-------------------------CG-----------TTCTGGAG----AG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTC-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAGCGA---AGAG--TTTATGAAA------------------TTGGTTCTA-------G----TAATCTGC---CCCTG
droBia1 scf7180000301506:3161412-3161578 + CTCAGAGT-------------------TGTGTTA--TGC--------------------CCCCCATCCAGA---------GAAG----AG-AACC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTAG-GC-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGCCA---GCAGCAG---AAAG--GGATTGAAG---------------CGT--ATT--T-------AT----TA--------ATCTCC
droTak1 scf7180000414111:5687-5851 - CTG--------------------CAGAAGTGCTT--C------------------------------------------CGAAGTCATCG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-GT-TCTGAAACTCAAATCACAGGATTATACTGTGAGCTGACCAGCGTGCCA---GCAGCAA---GAAG--TTTATAGGA------------------TGGATTTGAATTATA-T----TCCTT-------TCCC
droEug1 scf7180000409462:2740169-2740334 + GTCTA------------------TAGCAGTGTTT--TTTCTC--------------------CAACCCA-----------GAAG----TG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TTTGTAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAGCGA---ATAA--TGAATAAAA----AG---------TGT-------AAATT---------------A---TTCTCT
dm3 chr2R:10103261-10103436 - dme-mir-308 Known_mirbase CCCCACCA---------------TTGAAGTGCTA--TGC--------------------CCGCCATCCGGATGAGATGGCGGGG----TTAATAA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCGA---AAAG--CGACTGATA------------------T-GAT----------A---------------TCAATT
droSim2 2r:10806879-10807032 - dsi-mir-308 Known_mirbase ACA--------------------TAGAAGTGGTG--G--------------------------GA-----------TGGTGGGG----GGAATCA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCAG---AAAG--CGAATGATA------------------T-GAT----------A---------------TCAATA
droSec2 scaffold_1:7611657-7611810 - dse-mir-308 Known_mirbase ACA--------------------TAGAAGTGGTG--GG------------------------GGA-----------TGGTGGGG----GG-A-AT---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCAA---AAAG--CGAATGATA------------------T-TAT----------A---------------TCAATT
droYak3 2R:10041082-10041274 - dya-mir-308 Known_mirbase TTTTCACT-------A-------TGGAAGTGCTT--TGC--------------------CCGCCATCCGGATGAGA---TGGGG----GGAATCA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCCT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCAG---AAAG--TGACTGACA-AGATC---------TGT---------ATTATA-A----TAACCAGCT-AGTATT
droEre2 scaffold_4845:15739187-15739380 + der-mir-308 Known_mirbase CTCCCCA----------------CCAAAGTGCTT--TGC--------------------CCGCCGTCCGGATGATA---TGGGG----GGAATCA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAAATCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCGCCAGCAGCAG---AAAG--TGACTGACC-AGATT---------TGT---------ATTATA-T----CGATCTGCT-AGTATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTCTAAAT--------TTGTTAA----GAT---T--TTAATT-------------------------TGAATTATT---TG----------A--A---CACA-TTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TATAAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGAAACA---ACAACAA---ATTG----A---------------------------------ATTAAA-A----TCATCTGCTAGCTATCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................2115405.005405260416381116241526
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2211392.00139225338811916753412
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................191950.00950667484942081
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................201201.0020118237090
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................221179.00179136213352
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................201127.0012712500020
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22151.005102123700
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................18140.00404000000
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................22137.00378000290
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................21132.00322420015
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................22127.00272200050
.........................................................................................................................................................AATCACAGGATTATACTGTGAGC.................................................................................................23126.00262400020
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................21120.0020485111
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................22118.00181210050
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................18116.00161014100
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................23113.0013700060
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................20111.0011312014
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................19110.0010001180
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................1919.009900000
...........................................................................................................................................................TCACAGGATTATACTGTGA...................................................................................................1919.009900000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................2318.008600110
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................1918.008100205
.........................................................................................................................................................AATCACAGGATTATACTGTGAAA.................................................................................................2317.007700000
...........................................................................................................................................................TCACAGGATTATACTGTGAG..................................................................................................2017.007700000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2217.007700000
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................1917.007700000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................2315.005120002
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2115.005101210
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1815.005500000
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................2014.004300010
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2214.004400000
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................2114.004400000
.........................................................................................................................................................AATCACAGGATTATACTGTGC...................................................................................................2114.004120100
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2214.004000040
.................................................................................................................CGCAGTATATTTTTGTGTTTTGC.........................................................................................................................................2314.004300001
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................1914.004400000
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................2113.003100020
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................1813.003001101
............................................................................................................................................................CACAGGATTATACTGTGA...................................................................................................1813.003300000
.................................................................................................................CGCAGTATATTTTTGTGTTTC...........................................................................................................................................2113.003110001
.................................................................................................................CGCAGTATATTTTTGTGTTTCC..........................................................................................................................................2213.003000012
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................2312.002100001
.........................................................................................................................................................AATCACAGGATTATACTCC.....................................................................................................1912.002200000
.....................................................................................................................................................ATCAAATCACAGGATTATACTGTGA...................................................................................................2512.002000020
.........................................................................................................................................................AATCACAGGATTATACTGG.....................................................................................................1912.002001100
..........................................................................................................................................................ATCACAGGATTATACTGTGAGC.................................................................................................2212.002200000
................................................................................................................TCGCAGTATATTTTTGTGTTTT...........................................................................................................................................2212.002101000
.............................................................................................................................................................ACAGGATTATACTGTGAGA.................................................................................................1912.002200000
.........................................................................................................................................................AATCACAGGATTATACTGTA....................................................................................................2012.002100010
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTC........................................................................................................................................2412.002000002
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1812.002100001
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................2112.002100010
.......................................................................................................................................................CAAATCACAGGATTATACTGTGA...................................................................................................2311.001000010
..................................................................................................................GCAGTATATTTTTGTGTTTTC..........................................................................................................................................2111.001100000
..................................................................................................................GCAGTATATTTTTGTGTTT............................................................................................................................................1911.001100000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTC................................................................................................2411.001100000
.....................................................................................................................................................ATCAAATCACAGGATTATACTGTGG...................................................................................................2511.001000010
...............................................................................................................................................................AGGATTATACTGTGAGTT................................................................................................1811.001100000
...........................................................................T---TG----------A--A---CACA-TTCGATGTCT................................................................................................................................................................1911.001000010
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................2211.001010000
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2211.001100000
...........................................................................................................................................................TCACAGGATTATACTGTG....................................................................................................1811.001100000
..........................................................................TT---TG----------A--A---CACA-TTCGATGTCT................................................................................................................................................................2011.001000010
.........................................................................................................................................................AATCACAGGATTATACTAC.....................................................................................................1921.002000020
...........................................................................................................................................................TCACAGGATTATACTGTGAGT.................................................................................................2111.001100000
.........................................................................................................................................................AATCACAGGATTATACTA......................................................................................................1811.001100000
.........................................................................................................................................................AATCACAGGATTATACTGTGTA..................................................................................................2211.001001000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGCC................................................................................................2411.001100000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGG.........................................................................................................................................2311.001100000
........................................................................................................................................................AAATCACAGGATTATACTGTGAG..................................................................................................2311.001100000
..................................................................................................................GCAGTATATTTTTGTGTTTTGTTT-......................................................................................................................................2411.001100000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGCC........................................................................................................................................2411.001010000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGAA................................................................................................2311.001100000
.........................................................................................................................................................AATCACAGGATTATACTGTT....................................................................................................2011.001000100
.........................................................................................................................................................AATCACAGGATTATACTGTGAAAA................................................................................................2411.001100000
...............................................................................TG----------A--A---CACA-TTCGATGTCT................................................................................................................................................................1811.001000010
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2311.001100000
.................................................................................................................CGCAGTATATTTTTGTGTC.............................................................................................................................................1911.001000001
.................................................................................................................CGCAGTATATTTTTGTGTTC............................................................................................................................................2011.001000001
.........................................................................................................................................................AATCACAGGATTATACTTC.....................................................................................................1921.002100010
................................................................................................................TCGCAGTATATTTTTGTGTTT............................................................................................................................................2111.001010000
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1811.001100000
..............................................................................................................................................................CAGGATTATACTGTGAGT.................................................................................................1811.001100000
.....................................................................AATTATT---TG----------A--A---CACA-TTCGATGTCT................................................................................................................................................................2511.001000010
..............................................................................................................................................................CAGGATTATACTGTGAGC.................................................................................................1811.001100000
........................................................................................................................................................AAATCACAGGATTATACTGT.....................................................................................................2011.001100000
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................1911.001100000
.................................................................................................................CGCAGTATATTTTTGTGTTTTCC.........................................................................................................................................2311.001100000
............................................................................................................................................................CACAGGATTATACTGTGAGA.................................................................................................2011.001100000
............................................................................................................................................................CACAGGATTATACTGTGAC..................................................................................................1911.001000010
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................2411.001100000
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2011.001100000
droVir3
TTTATT--------------------TATTGTTATTTTAATT-------------------------------------TGTAG---------CCAA-CGCA-TTCGATGTCTCGCAGTATACTTTTGTGTTTTGTTT-AT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGTAGCA---ACAACAA---AAAT--CCATTT--T------------------A-GAC----------A-----------CAA-AGCTTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................CGCAGTATACTTTTGTGTTTTG..........................................................................................................................................22134514.0034514446910936736211327129168428020961971197746994533343511723272658513331179446360142393187221962663242142029711010223242632201311301122251025428956544574514297524554551411040252
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................2118519.00851963132521418654511340103391661101717883221634613704723613879359416726914311351287000000000000000000102999651623113097715167551210000
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................2215754.0057540019703120801102088533650261914690510851252204411414213364410142371011000000000000000000003113901173155700002010000000
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................1911620.001620493261354496103139130023315314592615132332141427593131653737010000000021000441093311621223013176658964808110000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................2311157.0011570070303110400032281516613024276402093785338160114423148700000000000000000000308829221200000000300000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................231890.0089000600010000010011110001000200000000131100000000000000000000000649436900000000000000
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................181599.0059947140151000000000100011302131231614131411210151012012001105101110100121320239523944535350013
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................201498.0049806287001001000002188125120171817310265124024522400000000000000000000101201725111000020000
.................................................................................................................CGCAGTATACTTTTGTGTTTT...........................................................................................................................................211497.0049700630735041313107561155110121243158411422724213818221130000000000000000000034903130030000000010
.........................................................................................................................................................AATCACAGGATTATACTGTGAAA.................................................................................................231365.003650028000001000000000000000511000000203171000000000000000000000000019910700000000000000
..................................................................................................................GCAGTATACTTTTGTGTTTTG..........................................................................................................................................211250.002500010000430200113110010000042873102100200210000000000000000000301065000171371682400000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................221220.002200012230200010006302121247910342410109072617861000100000000000000001212100006031100000
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................221202.0020200290000000000042322001003072100160239200000000000000000000000015387000000000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................201201.002010018900000100000000000000000010000000000000000000000000000000000100000000000000000
.........................................................................................................................................................AATCACAGGATTATACT.......................................................................................................171175.00175000000000000000000000000000000000000000000010000000000022010002033261945000000350036
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................181174.0017400001010100000614314344119016910013042204100000000000000000000100264100410020210000
.................................................................................................................CGCAGTATACTTTTGTGTTTTT..........................................................................................................................................221142.00142001000053241435138133271000002000030000210000000000000000000591300000032000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................211120.001200013000000000000001000000000000000100100000000000000000000000001040000000000000000
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................22199.00990041600000000002110120030234100001002110000000000000000000000000121310000000100000
.................................................................................................................CGCAGTATACTTTTGTGTTTTGA.........................................................................................................................................23194.0094005100001000012201100010326923034021213140000000000000000000030204600000000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTGT.........................................................................................................................................23193.009301139330000000110401001361108332341222152000001000000000000000100100020002000000
.....................................................................................................................GTATACTTTTGTGTTTTG..........................................................................................................................................18185.0085004012121737011100000100112210000000000200000000000000000000000001000757311100000
................................................................................................................TCGCAGTATACTTTTGTGTTTT...........................................................................................................................................22173.007300800000000002141200012121611130810241200000000000000000000000005400000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGG.................................................................................................23168.0068005000000000000000000000000000000001000000000000000000000000000352700000000000000
.........................................................................................................................................................AATCACAGGATTATACTGG.....................................................................................................19167.0067105500000000000000000000000000000000000000000000000000000000001000000001000000000
...................................................................................G---------CCAA-CGCA-TTCGATGTCT................................................................................................................................................................19154.005400600040200000001000000271134111300101001000000000000000000003000000001001000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAAAA................................................................................................24153.0053005000000000000000000000000000000010000000000000000000000000000182900000000000000
........................................................................................................................................................AAATCACAGGATTATACTGTGAG..................................................................................................23153.0053006000000000001110000000004100004021110000000000000000000000004161000000000000000
................................................................................................................TCGCAGTATACTTTTGTGTTTTG..........................................................................................................................................23149.00490021011000000000000000100133031010002011000000000000000000001103000038226100000
.................................................................................................................CGCAGTATACTTTTGTGTTTTC..........................................................................................................................................22144.00440022101000000012020212000000742900000001000000000000000000013000000000001000000
.................................................................................................................CGCAGTATACTTTTGTGTTT............................................................................................................................................20143.00430040021000000011000210000023330000121002000000000000000000001200000024300200000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGAA................................................................................................24137.0037001000000000000000000000000000000000000000000000000000000000000191700000000000000
.................................................................................................................CGCAGTATACTTTTGTGT..............................................................................................................................................18136.00360010429000100000000000091100100001000041000000000000000000010000000000000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................22134.003400150000000000100000000000021000000000000000000000000000000000033900000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTT................................................................................................24133.003300100000000000000000000000000000000000000000000000000000000000720500000000000000
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................19228.005673909000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................................................CAGGATTATACTGTGAG..................................................................................................17127.00270000000000000000000000000000000000000000000000000000000000000010057400000090001
.........................................................................................................................................................AATCACAGGATTATACTGTGAGC.................................................................................................23125.00250060000000000014000001201020200000000000000000000000000000000042000000000000000
.............................................................................................................................................................ACAGGATTATACTGTGAGT.................................................................................................19125.002500000000000000000000001001010000100101000000000000000000000000014400001000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTG...........................................................................................................................................21125.00250010000000100000000000021141110100110000000000000000000000000001000002104100000
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................19124.002400240000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAGTATACTTTTGTGTTTTG..........................................................................................................................................20121.00210090000010000000000000000021000100003000000000000000000000000000300000100000000
.........................................................................................................................................................AATCACAGGATTATACTC......................................................................................................18220.00406800000000000000000000000000000000000000011000000011000000000000000042443500000
.................................................................................................................CGCAGTATACTTTTGTGTTTTGAA........................................................................................................................................24120.00200010100000000000000000000120000000162220000000000000000000000000001000000000001
....................................................................................................................AGTATACTTTTGTGTTTTG..........................................................................................................................................19118.00180071001100000000000000002000000000001000000000000000000000001002200000000000000
...............................................................................................................................................................................TTATCGGCTGTAGCA---ACAAC...........................................................................20117.00170000000000000000000000000000000000000000000000000000000000000000010063006100000
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................21117.00174220000000000000000000000000000000001000000000000001000000000010100010001300000
.................................................................................................................CGCAGTATACTTTTGTGTT.............................................................................................................................................19116.00160051000000000010010000110010010000100100000000000000000000020000000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTTT...............................................................................................25116.001600000000000000000000000000000000000000000000000000000000000000412000000000000000
..................................................................................................................GCAGTATACTTTTGTGTTTT...........................................................................................................................................20116.00160090010000000000010000000001000101002000000000000000000000000000000000000000000
.............................................................................................................................................................ACAGGATTATACTGTGA...................................................................................................17114.001400000000000000000000000000000000000000000000000000000000000010001201000000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTGAAA-......................................................................................................................................25114.00140000000000002200000000000010000010001000000000000000000000020001001100000000011
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................19114.00140050000000000000300000004101000000000000000000000000000000000000000000000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTA..........................................................................................................................................22114.00140000100000000010000000011012010000100000000000000000000000010001000001020000000
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................21114.00140000000000000011010100000110100000000001000000000000000000003030000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTC................................................................................................24114.00140000000000000010000100100000000000000001000000000000000000000142300000000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTGTC........................................................................................................................................24113.00130000000000000000000000000000010200000020000000000000000000000040000011000200000
.................................................................................................................CGCAGTATACTTTTGTGTTTTAA.........................................................................................................................................23111.00110000000000000000000000000020010020201000000000000000000000000003000000000000000
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................18111.001100110000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TCACAGGATTATACTGTGA...................................................................................................19111.001100100000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTCC...................................................................................................21111.00110040000000000000000010010001100100000010000000000000000000000000000000000000001
..................................................................................AG---------CCAA-CGCA-TTCGATGTCT................................................................................................................................................................20110.00100000000000000000000000001032000000000000000000000000000000000000000000103000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTA................................................................................................24110.00100010000000000000000000000010000000000000000000000000000000000006200000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTA....................................................................................................20110.00100110000000000000000000000001000010001100000000000000000000000000000000000400000
...........................................................................................................................................................TCACAGGATTATACTGTGAG..................................................................................................2019.0090050000000000000000000000000000000000000000000000000000000000040000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGC...................................................................................................2119.0090000000000000000010002110000000000000001000000000000000000000030000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................1919.0090020001000000000000000000010000010001001000000000000000000000000001000000010000
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2219.0090060000000000000000000000021000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ACAGGATTATACTGTGAGA.................................................................................................1919.0090010000000000000000000001000000000000000000000000000000000000003100100000020000
......................................................................................................................................................TCAAATCACAGGATTATACTGT.....................................................................................................2219.0090000000000000000000100000001000000000000000000000000000000000000000020010400000
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1818.0081001000000000000001000000000000000010000000000000000000000000000012100000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTGC.........................................................................................................................................2317.0070030100000000000000000010000000000000000000000000000000000000002000000000000000
.........................................T-------------------------------------TGTAG---------CCAA-CGCA-TTCGATGTCT................................................................................................................................................................2417.0070000001000000000000000000000000000000000000000100000000000000000100000202000000
......................................................................................................................................................TCAAATCACAGGATTATACTG......................................................................................................2117.0070100000000000000000000000000001000000000000000000000000000000000002012000000000
............................................................................................................................................................CACAGGATTATACTGTGA...................................................................................................1817.0070120000000000000000000000000000000000000000000000000000000000000000003000100000
................................................................................................................TCGCAGTATACTTTTGTGTTT............................................................................................................................................2117.0070000020000000000000000000010012100000000000000000000000000000000000000000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTCC.........................................................................................................................................2315.0050000000000000000000100000000011000000000000000000000000000001100000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTT....................................................................................................2015.0050010000000000010101000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................AAATCACAGGATTATACTGTG....................................................................................................2115.0050050000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAAG.................................................................................................2314.0040000000000000000000000000010000000000000000000000000000000000003000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTTA...............................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000003100000000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTGTT........................................................................................................................................2414.0040000000000000000000000001001001000000000000000000000000000000010000000000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAA..................................................................................................2114.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ACAGGATTATACTGTGAA..................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000400000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTCCA..............................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000040000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTCT...............................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000004000000000000000
........................................................................................................................................................AAATCACAGGATTATACTGTGAGT.................................................................................................2414.0040000000000000000000000001001000010000000000000000000000000000010000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTTAAA.............................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000004000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGCA................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000400000000000000
.............................................................................................................................................................ACAGGATTATACTGTGAAA.................................................................................................1923.5070000000000000001000000000000000000000000000000000000000000000004200000000000000
................................................................................................................TCGCAGTATACTTTTGTGTTTTC..........................................................................................................................................2313.0030000000000000000000000000010000000000000000000000000000000000000200000000000000
........................................................................................................................................................AAATCACAGGATTATACTGTGAA..................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000003000000000000000
...............................................................................................................................................................AGGATTATACTGTGAG..................................................................................................1613.0030000000000000000000000000000000000000000000000000000000030000000000000000000000
................................................................................................................TCGCAGTATACTTTTGTGTTTTT..........................................................................................................................................2313.0030000000000000000000001000001000000000010000000000000000000000000000000000000000
.................................................................................................................CGCAGTATACTTTTGTGTTTTTG.........................................................................................................................................2313.0030000000000000000000000000000001000000000000000000000000000000000000001100000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGGA................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000001200000000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGC.................................................................................................2213.0030001000000000000000000000000000000020000000000000000000000000000000000000000000
...........................................................................................................................................................TCACAGGATTATACT.......................................................................................................1513.0030000000000000000000000000000000000000000000000000000000111000000000000000000000
..................................................................................................................GCAGTATACTTTTGTGTTTTC..........................................................................................................................................2113.0030020000000000000000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTTAA..............................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000002100000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2213.0030020000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AGGATTATACTGTGAGA.................................................................................................1722.5050000000000000000000000000000000000000000000000000000000000000000000100000030001
...............................................................................TGTAG---------CCAA-CGCA-TTCGATGT..................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
........................................................................................................................................................AAATCACAGGATTATACTGTGAGA.................................................................................................2412.0020010000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................TCGCAGTATACTTTTGTGTTTTAA.........................................................................................................................................2412.0020000000000000000000000000000000000001000000000000000000000010000000000000000000
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
droGri2
TCAGCTATACATTATT-------TAGAAGTGTTT--TCAATTTGATATACATATATAGATAGATC-----------TGTTAA-G---------CCCACCA-CTGTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTATT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGCCAGCAGCA---AGGACAACCAAATT--TTAATT-----------------------T--------------AC-----CCAAAT-ACAATTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................211155.001551532
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................221142.001426181
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................20120.0020200
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................19119.0019145
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................2119.00981
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................2017.00770
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................2117.00743
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................2213.00330
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2013.00330
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................1813.00330
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2221.50330
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................1911.00110
.............................................................................................CCCACCA-CTGTCGATGTCT................................................................................................................................................................1911.00110
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................1911.00110
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................2111.00110
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................2211.00110
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................1811.00110
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1811.00110
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2211.00110
.........................................................................................................................................................AATCACAGGATTATACTGTGATA.................................................................................................2320.50110
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1820.50110
droWil2
CTGGATAC--------TGATTAA----GGC---T--CTCGTC-------------------------GAC---------------------CACAGA-CTATTCTT-GCGTCTCGCAGTATATTTTTGTGTTTTGTTC-AATTTGTCAACTCAAATCACAGGATTATACTGTGAGCTGCGAAATGGAA-A---TCCACGC---AACC-------ATT-----TTAAAATCAAA---TTGACT-----TAAA-T--------GTC---TTCTCCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2215015.00501546158623999750
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................211981.00981495224264142
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................191782.007823171774817862
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................181202.0020218060142
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................211201.0020108015142
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................221162.0016201230345
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................20166.00663440415
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................21145.00450160227
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................19136.0036360000
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................20131.0031031000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................23128.0028000280
.........................................................................................................................................................AATCACAGGATTATACTGG.....................................................................................................19219.0038380000
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................19119.0019000154
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................18116.0016016000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................23114.001424071
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................21112.0012101001
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................21111.0011011000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................23111.001101091
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22111.0011000101
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................20110.001000091
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1819.00906021
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2218.00802033
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................1917.00704012
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................2217.00706010
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................2217.00700061
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................2216.00603030
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................1915.00503020
.................................................................................................................CGCAGTATATTTTTGTGTTTTTG.........................................................................................................................................2315.00501031
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1815.00502030
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1814.00404000
...........................................................................................CACAGA-CTATTCTT-GCGTCT................................................................................................................................................................2014.00400040
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................1814.00400040
.........................................................................................................................................................AATCACAGGATTATACTGTGAAA.................................................................................................2314.00402020
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2014.00401012
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................2014.00401021
..............................................................................................................................................................CAGGATTATACTGTGAGT.................................................................................................1814.00413000
.................................................................................................................CGCAGTATATTTTTGTGTTTG...........................................................................................................................................2114.00400031
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2213.00303000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................2413.00300030
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2213.00303000
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2213.00300021
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................2312.00202000
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................1912.00201010
....................................................................AC---------------------CACAGA-CTATTCTT-GCGTCT................................................................................................................................................................2212.00200020
.................................................................................................................CGCAGTATATTTTTGTGTTG............................................................................................................................................2012.00200020
........................................TC-------------------------GAC---------------------CACAGA-CTATTCTT-GCGT..................................................................................................................................................................2312.00200002
............................................................................................................................................................CACAGGATTATACTGTGAGA.................................................................................................2011.00101000
...........................................................................................................................................................TCACAGGATTATACTGTGAG..................................................................................................2011.00101000
.................................................................................................................CGCAGTATATTTTTGTGTTTTAA.........................................................................................................................................2311.00100010
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2211.00101000
...............................................................................................................................................TGTCAACTCAAATCACAGGATT............................................................................................................2211.00101000
........................................................................................................................................................AAATCACAGGATTATACTGTG....................................................................................................2111.00101000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGAA........................................................................................................................................2411.00100010
.........................................................................................................................................................AATCACAGGATTATACTGTGC...................................................................................................2111.00100010
........................................................................................................................................................AAATCACAGGATTATACTGT.....................................................................................................2011.00101000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGAAA-......................................................................................................................................2511.00100010
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2111.00100010
..............................................................................................................................................................CAGGATTATACTGTGAGG.................................................................................................1811.00100010
.......................................................................................................................................TTC-AATTTGTCAACTCAAATCACAGGATT............................................................................................................2911.00110000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTC-AATT..................................................................................................................................2911.00101000
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................1911.00101000
...............................................................................................................................................TGTCAACTCAAATCACAGGATTATACT.......................................................................................................2711.00101000
.........................................................................................................................................................AATCACAGGATTATACTGGA....................................................................................................2030.67200002
.........................................................................................................................................................AATCACAGGATTATACTGAC....................................................................................................2020.50101000
dp5
TCAGAACA--------TCTCCAA----AGTGTTT--TCC--------------------TAGGTG-----------TGCCGA-A----AG-AAGC---GGCGTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCTA---TCAAGAG---AGTG--TGAACGGAACCCAAG---------TGT--ATT----------T---------------TGTATTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................2112481.00248112034113192655913400
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2212302.002302359333546047266531319
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................191391.00391927417138448000
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................201264.002640248040111000
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................221162.001620102114504540
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................201110.00110011000000000
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................21189.008901831202420012
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................21166.006605200635000
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................20146.0046018104518000
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22135.0035010022120000
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................22130.003002063100000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................23128.002801520224030
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................19124.00240900726000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................23124.002403101201430
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................18122.002202200000000
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................19119.001901900000000
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................19118.001801800000000
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................18118.00188143110000
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................21114.001401400000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................23112.00120110611200
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................22110.001001000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................2319.0090100000710
........................................................................................................................................................AAATCACAGGATTATACTGTG....................................................................................................2118.0080800000000
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................1918.0081052000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2218.0080800000000
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................2017.0070400102000
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................1917.0070700000000
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1816.0060600000000
...........................................................................................................................................................TCACAGGATTATACTGTGAG..................................................................................................2016.0060600000000
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2015.0050400010000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2214.0040211000000
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................2114.0040211000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTG-......................................................................................................................................2514.0040100110010
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................2114.0040400000000
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2113.0030200010000
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2213.0030300000000
........................................................................................................................................................AAATCACAGGATTATACTGT.....................................................................................................2013.0030200100000
........................................................................................................................................................AAATCACAGGATTATACTG......................................................................................................1912.0021000010000
.........................................................................................................................................................AATCACAGGATTATACTGTGTT..................................................................................................2212.0020200000000
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2312.0020100010000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................2412.0020000002000
..................................................................................................................GCAGTATATTTTTGTGTTT............................................................................................................................................1912.0020200000000
...........................................................................................................................................................TCACAGGATTATACTGTGA...................................................................................................1912.0020200000000
..................................................................................................................GCAGTATATTTTTGTGTT.............................................................................................................................................1812.0020100010000
..........................................................................................................................................................ATCACAGGATTATACTGTGAA..................................................................................................2111.0010100000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2211.0010000010000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGAA................................................................................................2411.0010000000100
.........................................................................................................................................................AATCACAGGATTATACTGTGC...................................................................................................2111.0010100000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................2211.0010000010000
...........................................................................................................................................................TCACAGGATTATACTGTGAGT.................................................................................................2111.0010100000000
.....................AA----AGTGTTT--TCC--------------------TAGGTG-----------TG...................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1811.0010010000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2211.0010100000000
.........................................................................................................................................................AATCACAGGATTATACTGTGATT.................................................................................................2311.0010100000000
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................1911.0010100000000
..................................................................................................................GCAGTATATTTTTGTGTTTTGTTG-......................................................................................................................................2411.0010100000000
...........................................................................................................................................................TCACAGGATTATACTGTG....................................................................................................1811.0010100000000
.........................................................................................................................................................AATCACAGGATTATACTGTT....................................................................................................2011.0010000001000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGC.................................................................................................2211.0010100000000
.........................................................................................................................................................AATCACAGGATTATACTGTGACC.................................................................................................2311.0010100000000
..................................................................................................................................................AAACGCAAATCACAGGATTATACTGTGA...................................................................................................2811.0010100000000
...................................................................................A----AG-AAGC---GGCGTCTTGACGCCT................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1811.0010100000000
........................................................................................................................................................AAATCACAGGATTATACTGTGAG..................................................................................................2311.0010100000000
.........................................................................................................................................................AATCACAGGATTATACTGTA....................................................................................................2011.0010100000000
..................................................................................................................GCAGTATATTTTTGTGTTTTGT.........................................................................................................................................2211.0010100000000
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................1811.0010000010000
........................................................................................................................................................AAATCACAGGATTATACTGTGAGT.................................................................................................2411.0010100000000
..................................................................................................................GCAGTATATTTTTGTGTTTTT..........................................................................................................................................2111.0010100000000
............................................................................................................................................................CACAGGATTATACTGTGA...................................................................................................1811.0010100000000
.................................................................................................................CGCAGTATATTTTTGT................................................................................................................................................1611.0010000000010
.................................................................................................................CGCAGTATATTTTTGTGTTTTGC.........................................................................................................................................2311.0010010000000
...............................................................................................................................................................................ATGCTGGGCGTGCTA---TCAAGAG---A.....................................................................2311.0010000100000
........................................................................................................................................................AAATCACAGGATTATACTGTGG...................................................................................................2211.0010100000000
.....................................................................................................................GTATATTTTTGTGTTTTGT.........................................................................................................................................1911.0010100000000
.................................................................................................................CGCAGTATATTTTTGTGTTTA...........................................................................................................................................2111.0010100000000
..........................................................................................................................................................ATCACAGGATTATACTGTA....................................................................................................1911.0010100000000
............................................................................................................................................................CACAGGATTATACTGTGAGA.................................................................................................2011.0010100000000
.................................................................................................................CGCAGTATATTTTTGTGTAA............................................................................................................................................2020.5010000100000
.......................................................................................................................................TTG-TG-TCTGAAACGCAAAG.....................................................................................................................1920.5010100000000
...............................................................................................................................................................AGGATTATACTGTGAGAA................................................................................................1830.3310100000000
.......................................................................................................................................TTG-TG-TCTGAAACGCAAAAA....................................................................................................................2060.1710100000000
droPer2
TCAGAACA--------TCTCCAA----TGTGTTT--TCC--------------------TAGGTG-----------TGCCGA-A----AG-AATC---GGCGTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCTA---TCAGAGA----GTG--TGAAAGGAACCCAAG---------TGT--ATT----------T---------------TGTATTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................1911558.001558126846100341064
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2211235.00123540150195263148439
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................211410.00410818735561204
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................181236.0023622500470
.........................................................................................................................................................AATCACAGGATTATACTGG.....................................................................................................191176.0017617501000
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................191117.0011711600100
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................21149.00490947722
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................20130.00300447213
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................22129.00290192350
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................20127.00270160830
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................19125.00250213019
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22125.00250112381
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................21118.0018073116
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................18111.0011830000
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................20110.00100100000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................2317.007012121
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................2316.006021003
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................1913.003030000
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................2213.003030000
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................2113.003030000
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................2213.003030000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................2312.002010010
..............................................................................................................................................................CAGGATTATACTGTGAGT.................................................................................................1812.002110000
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................1812.002002000
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................2112.002200000
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2112.002000110
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2212.002000011
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................2312.002020000
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1812.002110000
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2211.001010000
..........................................................................................................................................................ATCACAGGATTATACTGC.....................................................................................................1811.001100000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2211.001010000
.........................................................................................................................................................AATCACAGGATTATACTAC.....................................................................................................1911.001100000
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2011.001010000
.................................................................................................................CGCAGTATATTTTTGTGTTTA...........................................................................................................................................2111.001010000
.........................................................................................................................................................AATCACAGGATTATACTGGA....................................................................................................2011.001010000
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2211.001000010
...........................................................................................................................................................TCACAGGATTATACTGTGAGT.................................................................................................2111.001000100
...................................................................................................................................................AACGCAAATCACAGGATTATAC........................................................................................................2211.001010000
.............................................................................................................................................................ACAGGATTATACTGTGAGT.................................................................................................1911.001010000
........................................................................................................................................................AAATCACAGGATTATACTGTGAGA.................................................................................................2411.001010000
...............................................................................................................................................................................ATGCTGGGCGTGCTA---TCAGAGA----GTG--TGA.............................................................2811.001000001
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................2011.001010000
.........................................................................................................................................................AATCACAGGATTATACTGTGC...................................................................................................2111.001000010
............................................................................................................................................................CACAGGATTATACTGTGA...................................................................................................1811.001010000
......................................................................................................................................GTTG-TG-TCTGAAACGCAAA......................................................................................................................1911.001000001
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................1911.001001000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTG-......................................................................................................................................2511.001000100
.................................................................................................................CGCAGTATATTTTTGTGTTTTGG.........................................................................................................................................2311.001010000
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................1911.001010000
........................................................................................................................................................AAATCACAGGATTATACTGTG....................................................................................................2111.001010000
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1811.001000001
.......A--------TCTCCAA----TGTGTTT--TCC--------------------TAG...................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................ATCACAGGATTATACTGG.....................................................................................................1811.001100000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2211.001010000
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................2111.001010000
.................................................................................................................CGCAGTATATTTTTGTGTTTTTA.........................................................................................................................................2311.001001000
.................................................................................................................CGCAGTATATTTTTGTGC..............................................................................................................................................1820.501100000
.........................................................................................................................................................AATCACAGGATTATACTGCCT...................................................................................................2120.501000010
droAna3
CACTGAAA--------TAAACAA----GGTGATA--TCACTCTA------------------CC----------------------------ATC---CATGTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GG-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTCA---GCAGCTG---AAACAGTGCATAATT----AAAGAATCCTA---TTT--------------GCCCAACTATGCT---AGATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2218324.008324232457492524294619
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................2111480.00148010191278568325
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................191280.002803643146819100
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................211134.0013451810171569
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................221110.001102021321243
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................21159.0059190111325
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................20158.005833071530
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................20138.003810024121
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................22135.003510255013
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................19125.00251005811
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................18118.00182120202
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................23116.0016220093
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................19114.00140140000
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................19110.0010311005
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................22110.0010370000
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................18110.0010000127
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................2319.009120105
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................2017.007100015
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................2317.007011104
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1817.007200140
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................2115.005031001
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2115.005000203
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................2215.005000122
.................................................................................................................CGCAGTATATTTTTGTGTTTG...........................................................................................................................................2115.005000014
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................1815.005500000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGC.........................................................................................................................................2315.005041000
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................2015.005410000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2214.004020101
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2014.004200002
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................1914.004000121
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2313.003010101
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2213.003010101
.................................................................................................................CGCAGTATATTTTTGTGTTG............................................................................................................................................2013.003000012
...........................................A------------------CC----------------------------ATC---CATGTCTCGTCGCCT................................................................................................................................................................2113.003020001
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1812.002000002
......................................................................................................................................................TCAAATCACAGGATTATACTGT.....................................................................................................2212.002000011
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2212.002001010
.................................................................................................................CGCAGTATATTTTTGTGTTC............................................................................................................................................2012.002020000
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................2212.002101000
.........................................................................................................................................................AATCACAGGATTATACTGTT....................................................................................................2012.002100001
...............................................................C----------------------------ATC---CATGTCTCGTCGCCT................................................................................................................................................................1911.001100000
....................................................................................................................AGTATATTTTTGTGTTTTGTT........................................................................................................................................2111.001100000
......................................................................................................................................................TCAAATCACAGGATTATACTGG.....................................................................................................2211.001000100
.........................................CTA------------------CC----------------------------ATC---CATGTCTCGTCGCCT................................................................................................................................................................2311.001100000
.........................................................................................................................................................AATCACAGGATTATACTGGA....................................................................................................2011.001000001
.................................................................................................................CGCAGTATATTTTTGTGTTTAT..........................................................................................................................................2211.001000001
........................................................................................................................................................AAATCACAGGATTATACTGTG....................................................................................................2111.001100000
..................................................................................................................GCAGTATATTTTTGTGTTTTC..........................................................................................................................................2111.001000001
................................................................................................................TCGCAGTATATTTTTGTGTTTT...........................................................................................................................................2211.001000001
.........................................................................................................................................................AATCACAGGATTATACTGTGC...................................................................................................2111.001000001
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTT-G.....................................................................................................................................2611.001001000
........................................................................................................................................................AAATCACAGGATTATACTGTGAT..................................................................................................2311.001010000
....................................................................................................................AGTATATTTTTGTGTTTT...........................................................................................................................................1811.001010000
..........................................................................................................................................................ATCACAGGATTATACTGA.....................................................................................................1811.001100000
..............................................................................................................................................................CAGGATTATACTGTGAGT.................................................................................................1811.001100000
.........................................................................................................................................................AATCACAGGATTATACT.......................................................................................................1711.001000100
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................2411.001000010
...............................................................................................................................................TTGAAACTCAAATCACAGGATT............................................................................................................2211.001010000
...............................................................................................................................................TTGAAACTCAAATCACAGGATTATACT.......................................................................................................2711.001010000
droBip1
TACTGAAC--------TAAACAA----GGTGATA--TCACTCCT------------------AC----------------------------ATC---CATGTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTCA---GCAGCCG---AATA--TCAGCAATT------------------C-AAT----------A---------------TCTAATSizeHit CountTotal NormTotal
No Reads
droKik1
TCCCGTCCCC---CCC-------GCAAAGTGCTT--CCTCTC-------------------------------------CGA------AG-AACC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TGTTTGAAAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAACAG---CAGC--AGCATAATT------------------A-GCCTTTA----------------------ATTATASizeHit CountTotal NormTotal
No Reads
droFic1
A------------------------GAAGTGTTA--TCC-----------------------ACA-----------TCCCGAAG----AG-AACC---CACGTCTCGACGACTCGCAGTATATTTTTGTGTTTTGTTG-GT-TTTGGAACTCAAATCACAGGATTATACTGTGAGCTGACAAGCGTGCCA---GCAACCA---AAGA--AATCTAAAA------------------CGGTTT-------------------------GGAATTSizeHit CountTotal NormTotal
No Reads
droEle1
CTCCG------------------CAAAAGTGTTT--GC-------------------------CA-----------TCCCGGAG----AG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAGCCA---AGAG--TGAATGGAA------------------CTGGTTTGAGCAACA-T----CCACC-------TGCTSizeHit CountTotal NormTotal
No Reads
droRho1
TTA--------------------TAGAAGTGTGT--TC-------------------------CG-----------TTCTGGAG----AG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTC-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAGCGA---AGAG--TTTATGAAA------------------TTGGTTCTA-------G----TAATCTGC---CCCTGSizeHit CountTotal NormTotal
No Reads
droBia1
CTCAGAGT-------------------TGTGTTA--TGC--------------------CCCCCATCCAGA---------GAAG----AG-AACC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTAG-GC-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGCCA---GCAGCAG---AAAG--GGATTGAAG---------------CGT--ATT--T-------AT----TA--------ATCTCCSizeHit CountTotal NormTotal
No Reads
droTak1
CTG--------------------CAGAAGTGCTT--C------------------------------------------CGAAGTCATCG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-GT-TCTGAAACTCAAATCACAGGATTATACTGTGAGCTGACCAGCGTGCCA---GCAGCAA---GAAG--TTTATAGGA------------------TGGATTTGAATTATA-T----TCCTT-------TCCCSizeHit CountTotal NormTotal
No Reads
droEug1
GTCTA------------------TAGCAGTGTTT--TTTCTC--------------------CAACCCA-----------GAAG----TG-ATCC---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TTTGTAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCCA---GCAGCGA---ATAA--TGAATAAAA----AG---------TGT-------AAATT---------------A---TTCTCTSizeHit CountTotal NormTotal
No Reads
dm3
CCCCACCA---------------TTGAAGTGCTA--TGC--------------------CCGCCATCCGGATGAGATGGCGGGG----TTAATAA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCGA---AAAG--CGACTGATA------------------T-GAT----------A---------------TCAATTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................221669373.00669373000012868526431751211200177200178217691823313093013583918555574124268047422764145282676299781742980910581185280035694116148273415001925424000000000000000001892191692051128035142104215334528572720092134912422520917786193271325064736985171742715561822410120121081140204115131452365450531015316216931251881168887641622589239922351892269334424402399600000419418337155550105188406153403145648988397310333812104609213568189786631756621263901388261382211130879327223205000004741575813461110442834452141165138828276482475995414462458813313635742552957000052426415321527314837922295188575615334241887148126023634315251747272240048661487325132212941264139330723195119532724237430011292149971162771189182710544129171723187107464563459511246983074731140817790199898623032322261348523511867161237631068425824749814518542604996501440572211519843164232027062136839213187334766374176158701852132132832724326565911076699101203726547864
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................221454236.004542360000541562914013519108500000014220100230211261410122141418102573736113357192169373770000000000000000000000092945103274691701101371092706250713968762532511581817110625179224248204376916812241862354128318710679587156499679503172632913670500001100301001011771172590494733112231273558542717323350000117916816813921041357607610200175114041431236120622320065307000001046300000244700000000079297371210361276561019196684401431000011521024141385157529353421108122142046191814114118526119362391910467233243407235401331237415001099771723532301101101121012228131027355
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................211245631.00245631000062101915118816947200000303213041704468331303976910557741205284581391515446129301038122011913052000000000000000000000002616128543194632874717940612010929938253858444221351622614368218421011257649620784827051847396839263857884125106621443309111817120235240274815426902825525300658353268272415460640533743539166475335000001882202564750625182185802034101456990494598353954687881049217808324213025825335201006121363000006613600210010171428027222711862547519237545680002678000053326132242681122684815018311814358798983614766537513655212486354148478243272196147163113114577720814476852685346299405497994992252352624333213769252326531881581834449210460633422051857066610109111424691591172201911
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22120240.002024000000001000000000000164510091572450000000033414935369358914024622934316225136201092622341390000000000000000000000043251262250510295010460201300221281213106400000412510000000401150010000000494265201118187753660503454401362441121001008161021111025230131440580016021173802014364417911217200000933300220003530101001201000101100000672270764183299215186771547712919712621203794209495718463319512012713922202155623116199776333300081656021870321216419011311538130919122572300801120100112520300253551
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................21118844.0018844000000000011100000006420318334611620412334335293334198130291139234682140219552700092000000000000000000334125570800117181221722215811106351101716235951813170210102000011100000000004389612527510836137286416018423131100000295732604556410421407244421913196117518119239152211958514100019051400000135800200015799856711914412104677751905814400001791882501562361203014552650501634441167568285231959552175316712557610849110438227790518263130591158702622861221331652071035171413239313693245517634109812103656571116662866932717312113910256127144328324121315414140637
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................1919015.009015000000000000000000009192002840259445098110811565191456131113131416512000000000000000000000001249223305153560011002523421431531522282200403201100000000715610346470039742627372894243739292940751510000004608114961540224014661352314015130710150722250200040550000092600000055342837617120016140009222580000133371952429616910542211281242816373732361623927128411286266392111873086480957535745385322592317989719814765216208816178152644392015829033657615311213191215211132121483524244379113325739
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................2317230.007230000010000000010000003500001000000011500401218415182181655000000000000000000000008479486089800294529961101152120011160555215589161810307180500000000010000000031101561200111210760004400000111500591280130018615070140054005029000000005000001511000000000141001212463481812363296001420000101111068532744021012110201049131101096308403349523914275135100040721130100018380012200003300310111286813980
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................2116341.006341000000000000000000002210066214300000061315412733271972027658464125170000000000000000000000022230000021000000000000010000000001000002000000000060000000000022539351216383032232030225257000004091100177010411711144031777370500423103416309012000000300200050442511381064215123232713210000341361928131683298820526165321341125213019219206730171881493181592136827642831845938811001883331627133929722162223277254431111023191174282180729151011919426544731200
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1815223.00522300000000000000000000518000000000000002020300011309430530000000000000000000000015061468124254900000000100000000410020003110000001000000000000000000000000003350013444100000000000004020010021120401000020029050000010000000047000000000150210075000100000000030000000000000000000000000041004201046001802013000000000000000000000070010000000000000000000010013
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2214862.004862000000000000020000000120000020000000100000000202010110000010000000000000000059861244854801000222100100000000280653314434001030280101020201020140000202041003002834321040000006686004132032006143356339112130010002370000000000000000110000000000000401011176001974450247500000020010000000003000100000013270010061216010240200014000111112120010714801000000000000000000000012
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................2014573.0045730000000000000000000031601778101000001613620421812553913115400030126000000000000000001710816000001760010033650003100168225000000000000000010100000000000151520802128961316231938000005011400102190723140133503624125161433031932300402300000060010003244289251220233000105510000217111669371691243112292116113241131533261641247924171283531805733105037753620010749296163118332612143863732164902876885535106478124324311115717112719213213842611435
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................2013559.0035590000110000000000010000000010086157215226631201035103111610000000000000000000000000731016265202012210010003230002319111724230120020230110100082380000000000104300410524211002000002221412918131125042101352497175811701722019004860000000000900000200000000002010002100035000310000411004134113413695220003023411326723111756735512134262862304911184000114131003308340425000011000006011002117116179
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................2312958.002958000000012000010000000000002020000000000000000100000000000000000000000000000032737023734611213861000000001100011013987419761000350291000201031360000231090100000410001020000005700110141111040002366237239010750280082000000000060000000000000000000051233840012914600920000000000000000000000000000000000110023000112000000000000000010000000100000000000000000000100000245
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................2212917.0029170000303661010400000001000000000000000101020000001200000000000000000000000000545567363639848108134711132215103451033440213988489202171324030000000000100000000010041000020100000000005010002617090019605025033100000410100000000100000010000000001000002301082003100000100200011000000000000000010000001412030100203000001000100000000011100000000000000000000000023
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2212858.00285800000000000001000000517000300000000663192311307205744400000000000000000000000336367225380000050200001001100001100261642520210101100000000001013000001005015400217216751210000000001838112050012170170306100000471200000000000000450000001006210003655300258600760000011221464120200020112145000372627754351037462835241101021200001011193201116352236300020000020001020114601099
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................2112468.0024680000002030010200000000000010000000000001000001010001000000100000000000000000208220148234118251612101100010101400320100155702848641801608240000000000000000000000000000001000000000000000002120000023010000000000400000000000000000100000000000000164000880050000000001000000000000000000000001000000010105120000000000000010000000810000000000000000000000100801
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................2312223.00222300000000000000000000013101410000000010001411031113712320004210000000000000000013230400010100210010010006030700000001000001000000050000000000005401131271235993170000010020062606101061430135241107022311020003000000001100000020843101021153211315551800000524415119403443483117163512780412445132514216447493175532263710538281441246313227185311347273516524343119111411314411250763523571291337131013460
........................................................................................................................................................AAATCACAGGATTATACTGTGAG..................................................................................................2311694.0016940000100100010000000000000000000000000000002000001020000000000000000000000000321392231369010031131001100210000910171537402310100700000000000000000000000020000120100002000000000000310200580103020000001600000000010000000000000000000001038000820010000000000000000000200000000000001000010000212111010000100010020000000001000000000000000000000000125
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................1911439.0014390000000000000000000012200241100000002001002320122652100002100000000000000000088111100000001300000011000000331300000000000000000000100022000000105021350042352000002003304790222027002400013011901111100300000000010000005678103410420001213000005342618462011669315130081086811926111369573700210473663941161217354311964302620252143157218396133600170132411711131328351318470
.........................................................................................................................................................AATCACAGGATTATACTGTGATG.................................................................................................2311275.00127500000000000000000000000000000000000000000000000000000000000000000000000000003383532293540000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2211141.001141000000000000000000000000010000000000000109000000013220000000000000000000000001000000000000010000000000000000000000000000000000000000000000112903467866731215000001082004103350010017020100000000200001000000010000000001012000000010000000000211223105110021430117320032429352161715210370176112384745300025274723400604012110000112110022001213086120
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2211049.00104900000001000000000000000000100000000000000000000000000000000000000000000000002302661803080110110000020000000000122641000000100000000001000000000000001000010000000000000000000100300110000010000002000000000000000001000000000000000300001100000000010010001000000110000000010011000030000000010000010000000100000002000000000000000000000000006
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................2311022.00102200000000000001000000000000000000000002011412020105322000000000000000000000002211030001110000000000000000010100000000000000000202000010001000446150222015266000002000004601320030121350000101010000000000000037000000170011061811532260301010000003652101205272100503103110920213533336945826111811191396121672009321365944001151438851153410019115104013321114583415
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................181901.0090100000000000000110000010000002002000011030102010120001000201000000000000000001813111400000110001000000000100012001000001000000000003000014000001122003531350000000004209000120010020022310060136006422002000000000000000019211727850010000000000000125011000000020230027362770341435186100101242391116281149192412613241278221551163541211040060101342431024142234
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................181893.0089300000000000000000000030005010140300001003210010122003000000000000000000000000000000000000000000000000000000000000000000000000001000000000000281040118613109300100000000500110241051500020400013071810150030200000003002000481823241315000110014000000000500010000012002001100001057171823321010717510441654593015324512051022011063303002400100010110122250
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................181888.008880000000000000000010038000000155112224000311000102012001200000000000000000000000352515035323001000100010191713231523002018040000000001000117220000102444001104434000000010000000718061002261118142490402051000000000000000030000002001303200100000107110000201422010022031156151230013136151910133125231262973301462114712811200226002000073000000000000000000000012134
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................221775.00775000000010000020000000010001000000000120100000100020000000000000000000000000084105671950323523050102000100000110141820111100000700000000002001001100000010000113030000200000234213321010030020102002000000000000001000002100000000000000002000040020000006000000010000001000100000011000000111100020000000100010130100005512000000000000001000000000023
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................221639.006390000100000001000000000000000000000010010024100110503100000000000000000000000414670000011100020010100000181171625000026030000000010100000000000100300130313210210000067030015160130033160120170150000009401000000000000001400000000030000181000010700032000000200020110001000100010000153201121204270302407010001001031110000071000000000000000000100010015
.........................................................................................................................................................AATCACAGGATTATACTGTGC...................................................................................................211598.005980000000000000000000000000000000000000000085000006410000000000000000000000000212412311010311000000060100011159301000000101010000000035416350000000000200010110001002000000010100663601800200301801100100031000000000000000000000000000000000000000100100000000060311100011010001000010010000220303020020100002000002100010018000000000000000000000000004
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................201559.00559000000000000000000000000021340000000120000000002112210000000000000000000000000000000000000000000000000000000000100500000000000000000000000001301050111100300000404104000112303210523001440010031120000000000003000000124512000001000110000000000000000000010110020111100222021031200040511502125139400111200301002552102410003000301112100232350
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................221519.0051900000000100020000000001001000000000101020221101103413000000000000000000000002001020000100001000010100004100000001000000000000000000000000000061106511121310000000000022028240671012100010000100300100000000020000003011421001000040000000011111131202121032003212751012805310500130013107867111000121162121101403144142022140021063120025210100
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................211494.0049400000000000012000000000000100000000200000011001060100000000000000000000000001921947110012010100600200000115358390000000208010000001407500000000001210000003000000000000002081470230011002030600110052000000000000000000000000000000000000000200000000000030101301020000000000002030200101220000200200000000010000000012000100000000000000010002111
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................211440.00440000011010002010000000000000000000000000010100000200000000000000000000000000013791521000112000100110000151525130300000105000000003023000000000001000001000000000000000000653301400760702804000010074000000000000000010000000000100000000000900600000000040300000001010000100001010100121101000210100003000200001000001000000100000000000000000101
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................191410.004100000000000000000000001000701200000000000010000011120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111700413200200000001001002101510070200000200101600300000000000000000007104001010530001000000000000000000001100000030110004171120360103081272022102210000141002001901112601001200000100010042000
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................201394.0039400002100000111000000000000000000000000000000000000000000000000000000000000001016615224035720000021110021534239134330260020100000000000000000000000100000000000000000000006010026000041117010220000013000000000000000000000000000000001103000111000000000000000000000000000000000000000000000010000000000010000001000000010000000000000000000000000035
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................211341.003410000000000000000000000000000000000000001000000000000000000000000000000000000116000000000000000000000400106381202000030000010101000000000000000000000000010200000010000703100001301000020020011000000000000000000000000000100000100000970110700000000010000000000100000000000010000000000000110000000000000000000014100000000000000000000000001
...........................................................................................................................................................TCACAGGATTATACTGTGAG..................................................................................................201335.00335000000000000000000000000000000000000000000000000000000000000000000000000000011774060203120010032110018205820761613001069000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000079
.........................................................................................................................................................AATCACAGGATTATACTGTGAGC.................................................................................................231310.003100000001000000000000000000000000000000000000000000010000000000000000000000000296134321700021000000000000002037172120000000700000000100000000000000000000000000000000000000032010012000100000100400000000000000001000000000000000061900010110013000000000000000000000000000000000100000201000200100000010000000000000100000000000000000000000000015
.................................................................................................................CGCAGTATATTTTTGTGTTTG...........................................................................................................................................211290.00290000000100000000000000000000000000000000000100000000000000000000000000000000000010000001000000001000000001101000000000000000000000000000000001101132301006100000107100240224806334113000100000120000000000000002000000414210000210003000000000000001100000010000000000000010100000010000222317711000111011002002701004000203213035200303226150
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................191254.002540000000000000000000036000000000000200000010000010100000000000000000000000000241050500102100000000021108201837810100000410000000000000000000010000000000001000000000000010042050002000004000000150100000000000000010000003000000000000000000000020000000000000000000000000010000004140200010100000000000000000000001000000000000000000000000006
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................201175.001750000000000000000000000000200000000100200010111001120100000000000000000000000101000000000000000000000000000000000000000000000000000000000000000040301020071000000001000120000025103300000000000100000000000000000000020120000201001001000000000040100000000000000020200260010070104210011050103010011313000100122500010210000100000000020040
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................191170.0017000000000000000000000000000000000000000000000000000000000000000000000000000008219200000010000100020000000021110000100100000000001000000000000000000000012000000000000015214070001301301050010003000000000000000001000000000000000510001000000000000000000000000000000000001000000141303001200001110000010200010000000000100000000000000000000
.........................................................................................TAATAA---CACGTCTCGACGCCT................................................................................................................................................................211160.001600000000000000000000000100000000000000110001000011001100000000000000000000000000001000010000000000000000000000000000000000000000200000001000000002001000001000000000000000000000000000000000000000100000000000000000204011126131943131001000001100011100001040002101002110103120000000000401000000000081410100010200100202000101000000200230
..................................................................................................................GCAGTATATTTTTGTGTTTTT..........................................................................................................................................211157.0015700000000000000000000001008000000000311124201044000107000000000000000000000000100000000000000000000000000000000000000000000000000000000000001030018248000100000010000000000000000000000000000002000000000000200000000000000000000000000000001302121030020243012373013011502400000000001000001300000010000000110000000000000000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGAA................................................................................................241157.0015700000000000001000000000000000000000000000000000000000000000000000000000000002927203100000000000000000000000603000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039
................................................................................................................TCGCAGTATATTTTTGTGTTTT...........................................................................................................................................221146.00146000001000000000000000001000000000002000000000100011200000000000000000000000011020000000000000100000300000001100001000000000000010000000000000000051000101100000000000100030022100100000000010000000000000000000000001160001140003000000000000000100000000010001100000343212016001141150000210010000002303000001200000010200000000000011020
.........................................................................................................................................................AATCACAGGATTATACTGTGAGG.................................................................................................231138.0013800000000000000000000000000000000000000000000000000000000000000000000000000002020526000000000000000000000001010000000000000000000000000000000500000000000000000000000000022020010000103000000500000000000000000000000000000000042000131100300000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000008
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................241136.0013600000000000000000000001000000000000010000000100010100000611000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010010000000600001020000000000000010000000000000000000000000030110001012100100000000003000300000000000001009002047010000000300301142021100000001131200221003211030501110000000010010
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................231114.0011400000000000000000000000000100000000010000130110221211000000000000000000000000000000001000000000000000000000000000000000000000001000000000000010002020300100000000000000000001010000000000000000000000000000000000000202001011100100000000000001001101000000000020010301122011014011241120010000100004100000031011200000101000000000000050
..........................................................................................AATAA---CACGTCTCGACGCCT................................................................................................................................................................201100.00100000000000000000000000000000000000000000000100000000010000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000130000000000000000000000000000001000000000000000000000000000000000000100011324195140001000010200000000001011000002100003211000000000000001000000000011001000000102010300001000000000000120
.............................................................................................................................................................ACAGGATTATACTGTGA...................................................................................................17199.0099000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000480000000000000000000000000000000000000000000000030100027401015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TCACAGGATTATACTGTGA...................................................................................................19185.00850000000000000000000000000010000000000000000000000000000000000000000000000000404202001140000000011000110151870200102000000000000000000000000000000000000000000000000000100000330400000000008000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
...........................................................................................................................................................TCACAGGATTATACTGTGAGT.................................................................................................21184.008400000000000000000000000000100000000000000000010000100000000000000000000000006440000000000000000000000008413000000010000000000000000000000000001000000000000000003000000000000001000000000000000000000000000000000000400000000000006001400000000000000000000000000000000010011010000000030000000000001000000001000000200000000000000000010
.................................................................................................................CGCAGTATATTTTTGTGTTTTGC.........................................................................................................................................23182.00820000000000000000000000100000000000000000000000000010100000000000000000000000000100000110000100000000100001000000000000000000000000000000000000000101000031000000001001000110000002000000000000000000000000000000000000000000010030010000000000201000002021001101201000120100001000000022302000000043000000160000000100001000000000011010
droSim2
ACA--------------------TAGAAGTGGTG--G--------------------------GA-----------TGGTGGGG----GGAATCA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCAG---AAAG--CGAATGATA------------------T-GAT----------A---------------TCAATASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2219252.009252514191202396127486214610558937038157321045001
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................2116064.00606483536253215765822451122374510700000
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1812799.0027991005010015712706000000
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................1912483.0024831003341207244501318761800000
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................2211611.0016111011923138392204955922000
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................1811024.00102451411318519112123182100000
..............................................................................................................................................................CAGGATTATACTGTGAG..................................................................................................171733.00733000000331627684000000
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................201703.007034112316274002890500000
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................191614.0061400002762291002105100000
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................181558.005580000275217101062200000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................231558.0055800020044252832004000000
...............................................................................................................................................................AGGATTATACTGTGAG..................................................................................................161530.00530000000514417695164000000
.........................................................................................................................................................AATCACAGGATTATACT.......................................................................................................171529.0052900000015956103346000000
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................211503.00503100245250242150431934050000
.............................................................................................................................................................ACAGGATTATACTGTGA...................................................................................................171448.00448000000121246387000000
.............................................................................................................................................................ACAGGATTATACTGT.....................................................................................................151392.003920000000000392000000
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................182325.006500000200010646100000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................231314.003140001001465294210000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................231271.002710002002932118755307000
.......................................................................................................................................TTTCGT-TTTGCAACTCAAA......................................................................................................................191245.00245003100514387573000000
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................191203.002030002000021198000000
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................191198.00198136292700000005100000
.........................................................................................................................................................AATCACAGGATTATACTGG.....................................................................................................191191.00191104434300000001000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................221146.00146000300394432253000000
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................211113.0011300017010001831100000
.......................................................................................................................................TTTCGT-TTTGCAACT..........................................................................................................................153100.00300000000864991560000000
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................20189.0089141016320110535200000
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................22183.008310040020402015100000
.................................................................................................................CGCAGTATATTTTTGT................................................................................................................................................16177.0077000000000077000000
................................................................................................................................................................GGATTATACTGTGAG..................................................................................................15177.00770000000372443000000
..............................................................................................................................................................CAGGATTATACTGTGA...................................................................................................16171.0071000000017360000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................22162.0062010000000061000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................23157.00570013191710624013000
.......................................................................................................................................TTTCGT-TTTGCAACTCAAAA.....................................................................................................................20155.005500100014323112100000
............................................................................................................................................................CACAGGATTATACTGT.....................................................................................................16147.0047000000000047000000
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................19245.5091000200000089000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22141.0041000100001043500000
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................21139.00392021030000202000000
...............................................................................................................................................................AGGATTATACTGTGA...................................................................................................15137.0037000000261946000000
.............................................................................................................................................................ACAGGATTATACTGTGAGT.................................................................................................19136.0036000000000234000000
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................21134.003410000099951000000
.........................................................................................................................................................AATCACAGGATTATA.........................................................................................................15131.0031000000100030000000
.......................................................................................................................................TTTCGT-TTTGCAACTCAA.......................................................................................................................18228.505700000019127181000000
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................18127.0027000200000025000000
.......................................................................................................................................TTTCGT-TTTGCAACTCAAAAA....................................................................................................................21426.001040000007952342000000
.......................................................................................................................................TTTCGT-TTTGCAACTCA........................................................................................................................17225.00500000002223221000000
.............................................................................................................................................................ACAGGATTATACTGTGAGA.................................................................................................19121.0021000000003711000000
.............................................................................................................................................................ACAGGATTATACTGTGAA..................................................................................................18120.0020000000000119000000
............................................................................................................................................................CACAGGATTATACTGTGA...................................................................................................18120.0020000100002314000000
.................................................................................................................CGCAGTATATTTTTGTG...............................................................................................................................................17119.0019000000010018000000
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................20119.0019000170001100000000
.....................................................................................................................GTATATTTTTGTGTTTT...........................................................................................................................................17217.0034000000000034000000
..........................................................................................AATCA---CACGTCTCGACGCCT................................................................................................................................................................20113.001342000000007000000
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................20113.001300041000106100000
...............................................................................................................................................................AGGATTATACTGTGAGA.................................................................................................17112.001200000012900000000
.............................................................................................................................................................ACAGGATTATACTGTGAGC.................................................................................................19112.0012000000000012000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................21111.001100010000505000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................22111.001100000001208000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGAA........................................................................................................................................24111.001100000012430001000
......................................................................................................................TATATTTTTGTGTTTTG..........................................................................................................................................17510.2051000000000051000000
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................19110.001010000002511000000
.......................................................................................................................ATATTTTTGTGTTTTG..........................................................................................................................................1689.3875000000000174000000
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1819.00901100000124000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................2419.00900006110010000000
.............................................................................................................................................................ACAGGATTATACTGTGAT..................................................................................................1819.00900000000108000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGAAA.......................................................................................................................................2519.00900000000710001000
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2018.00800020000006000000
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2318.00800011310002000000
.........................................................................................................................................................AATCACAGGATTATACTGTA....................................................................................................2018.00821300000110000000
.............................................................................................................................................................ACAGGATTATACTGTG....................................................................................................1617.00700000000016000000
........................................................................................................................TATTTTTGTGTTTTG..........................................................................................................................................1586.7554000000000054000000
................................................................................................................TCGCAGTATATTTTTGTGTTT............................................................................................................................................2116.00600004200000000000
.............................................................................................................................................................ACAGGATTATACTGTGAGGG................................................................................................2016.00600000000006000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGC.................................................................................................2316.00600000000114000000
.........................................................................................................................................................AATCACAGGATTATACTTGA....................................................................................................2095.67510000001062861000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTAA.........................................................................................................................................2325.501100000000550100000
...........................................................................................ATCA---CACGTCTCGACGCCT................................................................................................................................................................1915.00521000000002000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGAA................................................................................................2415.00500000001220000000
.........................................................................................................................................................AATCACAGGATTATACTA......................................................................................................1815.00500000002021000000
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................2215.00500000001202000000
............................................................................................TCA---CACGTCTCGACGCCT................................................................................................................................................................1815.00510400000000000000
.......................................................................................................................................TTTCGT-TTTGCAACTC.........................................................................................................................1624.50900000023220000000
..............................................................................................................................................................CAGGATTATACTGTGAGGG................................................................................................1914.00400000000004000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTTG.........................................................................................................................................2314.00400000000004000000
............................................................................................................................................................CACAGGATTATACTG......................................................................................................1514.00400000000004000000
.................................................................................................................CGCAGTATATTTTTGTGTTAA...........................................................................................................................................2114.00400000000310000000
............................................................................................................................................................CACAGGATTATACTGTGAGA.................................................................................................2014.00400000000400000000
...................................................................................................................CAGTATATTTTTGTGTTTT...........................................................................................................................................1914.00400000000004000000
..............................................................................................................................................................CAGGATTATACTGTGAGT.................................................................................................1814.00401000010002000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGTC................................................................................................2414.00400000000004000000
................................................................................................................TCGCAGTATATTTTTGTG...............................................................................................................................................1814.00400001300000000000
................................................................................................................TCGCAGTATATTTTTGTGT..............................................................................................................................................1914.00400002000002000000
..............................................................................................................................................................CAGGATTATACTGTGAGC.................................................................................................1814.00400000000004000000
................................................................................................................TCGCAGTATATTTTTGTGTTTT...........................................................................................................................................2214.00400000000102100000
.................................................................................................................CGCAGTATATTTTTGTGTTG............................................................................................................................................2013.00320000000001000000
.........................................................................................GAATCA---CACGTCTCGACGCCT................................................................................................................................................................2113.00300100010001000000
.................................................................................................................CGCAGTATATTTTTGTGTTTG...........................................................................................................................................2113.00300000000003000000
.........................................................................................................................................................AATCACAGGATTATACTT......................................................................................................1813.00310000000002000000
...........................................................................................................................................................TCACAGGATTATACTGT.....................................................................................................1713.00300000000003000000
..................................................................................................................GCAGTATATTTTTGTGTT.............................................................................................................................................1813.00300002000001000000
....................................................................................................................AGTATATTTTTGTGTTTT...........................................................................................................................................1822.50500000000005000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2212.00210000000001000000
..................................................................................................................GCAGTATATTTTTGTG...............................................................................................................................................1612.00200000000002000000
..........................................................................................................................................................ATCACAGGATTATACTG......................................................................................................1712.00200000000002000000
..........................................................................................................................................................ATCACAGGATTATACT.......................................................................................................1612.00200000000002000000
..............................................................................................................................................................CAGGATTATACTGTG....................................................................................................1512.00200000000011000000
...............................................................................................................................................................AGGATTATACTGTGAGT.................................................................................................1722.00400000000121000000
................................................................................................................TCGCAGTATATTTTTGTGTT.............................................................................................................................................2012.00200001000001000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTT.......................................................................................................................................2512.00200001100000000000
.............................................................................................................................................................ACAGGATTATACTGTGAGGA................................................................................................2012.00200000000002000000
................................................................................................................................................................GGATTATACTGTGAGA.................................................................................................1612.00200000000110000000
..............................................................................................................................................................CAGGATTATACTGTGAT..................................................................................................1712.00200000000002000000
.........................................................................................................................................................AATCACAGGATTATACTAC.....................................................................................................1912.00220000000000000000
.........................................................................................................................................................AATCACAGGATTATAC........................................................................................................1612.00200000000002000000
...........................AGTGGTG--G--------------------------GA-----------TGGTGGGG----G........................................................................................................................................................................................1912.00200000000002000000
.................................................................................................................................................................GATTATACTGTGAGA.................................................................................................1512.00200000001001000000
.........................................................................................................................................TCGT-TTTGCAACTCAAATCACAGGATT............................................................................................................2712.00220000000000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2112.00200000000002000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGG.........................................................................................................................................2312.00200020000000000000
.........................................................................................................................................................AATCACAGGATTATACTGGA....................................................................................................2012.00200000011000000000
droSec2
ACA--------------------TAGAAGTGGTG--GG------------------------GGA-----------TGGTGGGG----GG-A-AT---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCAA---AAAG--CGAATGATA------------------T-TAT----------A---------------TCAATTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................22136133.0036133164311915299519580
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................211638.0063827225135206
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................191530.0053014318187182
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................211375.00375857151168
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................211334.003341347819103
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................201150.001509401091
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................19171.0071633230
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................22163.0063461106
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................23156.0056829415
.................................................................................................................CGCAGTATATTTTTGTGTTTG...........................................................................................................................................21144.0044281123
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................23143.0043517813
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................20142.0042270114
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................18129.002910523
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................18125.002530148
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................19122.002211533
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................20122.002211515
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22121.002154210
.................................................................................................................CGCAGTATATTTTTGTGTTG............................................................................................................................................20121.002124312
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................20120.002020000
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................22117.001705111
.................................................................................................................CGCAGTATATTTTTGTGTTTTTG.........................................................................................................................................23114.00143326
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................18112.001212000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................23111.00110137
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................18111.00112225
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................22110.00100406
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................20110.00107102
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................1919.0094113
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2216.0063021
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................2216.0066000
........................................................................................GG-A-AT---CACGTCTCGACGCCT................................................................................................................................................................2016.0066000
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2315.0051013
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2215.0055000
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1815.0053020
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2114.0040103
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1814.0042020
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................1914.0043010
.........................................................................................................................................................AATCACAGGATTATACTGTT....................................................................................................2013.0031002
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................2113.0032010
..................................................................................................................GCAGTATATTTTTGTGTTTTGA.........................................................................................................................................2212.0021001
................................................................................................................TCGCAGTATATTTTTGTGTTTT...........................................................................................................................................2212.0021001
.................................................................................................................CGCAGTATATTTTTGTGTTTC...........................................................................................................................................2112.0021001
..................................................................................................................GCAGTATATTTTTGTGTTTTT..........................................................................................................................................2112.0022000
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2212.0022000
.......................................................................................................................................TTTCGT-TTTGCAACTCAAA......................................................................................................................1912.0020020
.........................................................................................................................................................AATCACAGGATTATACTT......................................................................................................1812.0020002
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................2112.0022000
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................2112.0022000
................................................................................GGGG----GG-A-AT---CACGTCTCGACGCCT................................................................................................................................................................2412.0022000
..................................................................................................................GCAGTATATTTTTGTGTTT............................................................................................................................................1912.0021001
...............................................................................TGGGG----GG-A-AT---CACGTCTCGACGCCT................................................................................................................................................................2512.0022000
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................2212.0021010
................................................................................................................TCGCAGTATATTTTTGTGTTTTGTTTC......................................................................................................................................2711.0010100
.................................................................................................................CGCAGTATATTTTTGTGC..............................................................................................................................................1811.0010001
..........................................................................................................................................................ATCACAGGATTATACTGTGAGG.................................................................................................2211.0011000
.........................................................................................................................................................AATCACAGGATTATACTGG.....................................................................................................1911.0011000
...............................................................................................................................................................................ATGACCAGCGTGCCA---GCAGCAA---......................................................................2211.0011000
..................................................................................................................GCAGTATATTTTTGTGTT.............................................................................................................................................1811.0011000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................2411.0010100
..............................................................................................................................................TTTGCAACTCAAATCACAGGAT.............................................................................................................2211.0011000
.................................................................................................................CGCAGTATATTTTTGTGTG.............................................................................................................................................1911.0010100
...........................................................................................................................................................TCACAGGATTATACTGTGA...................................................................................................1911.0011000
..................................................................................................................GCAGTATATTTTTGTGTTTTTG.........................................................................................................................................2221.0022000
.........................................................................................................................................................AATCACAGGATTATACTGTAGA..................................................................................................2211.0010010
.................................................................................................................CGCAGTATATTTTTGTGTTTTGG.........................................................................................................................................2311.0011000
.........................................................................................................................................................AATCACAGGATTATACTGTGTT..................................................................................................2211.0010001
.................................................................................................................CGCAGTATATTTTTGTGTTTTTGA........................................................................................................................................2411.0011000
..................................................................................GG----GG-A-AT---CACGTCTCGACGCCT................................................................................................................................................................2211.0011000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGC.................................................................................................2311.0011000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGC.........................................................................................................................................2311.0011000
.........................................................................................................................................................AATCACAGGATTATACTGTA....................................................................................................2011.0010001
.......................................................................................................................................TTTCGT-TTTGCAACTCAAAA.....................................................................................................................2011.0011000
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................1911.0010010
..................................................................................................................GCAGTATATTTTTGTGTTG............................................................................................................................................1911.0010010
.................................................................................................................CGCAGTATATTTTTGTGTTA............................................................................................................................................2011.0010001
...................................................................................G----GG-A-AT---CACGTCTCGACGCCT................................................................................................................................................................2111.0011000
.............................................................................................................................................................ACAGGATTATACTGTGAGT.................................................................................................1911.0010001
.................................................................................................................CGCAGTATATTTTTGTGTC.............................................................................................................................................1911.0010100
...................................................................................................................CAGTATATTTTTGTGTTT............................................................................................................................................1811.0011000
.......................................................................................................................................................CAAATCACAGGATTATACTGTG....................................................................................................2211.0011000
...................................................................................................................CAGTATATTTTTGTGTTTTGTTTC......................................................................................................................................2411.0010010
.........................................................................................................................................................AATCACAGGATTATACTGTGAGG.................................................................................................2311.0010010
.............................................................................................................................................................ACAGGATTATACTGTGAGC.................................................................................................1911.0011000
...............................................................................................................................................TTGCAACTCAAATCACAGGATTATACTGT.....................................................................................................2911.0010100
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTTC......................................................................................................................................2611.0010010
..........................................................................................................................................................ATCACAGGATTATACTGTGAGC.................................................................................................2211.0011000
droYak3
TTTTCACT-------A-------TGGAAGTGCTT--TGC--------------------CCGCCATCCGGATGAGA---TGGGG----GGAATCA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCCT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCA---GCAGCAG---AAAG--TGACTGACA-AGATC---------TGT---------ATTATA-A----TAACCAGCT-AGTATTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................2112843.00284381699921952547600042
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2211564.00156434348475151111953140000
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................191398.003981517536102950470000
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................221158.00158010323801000023
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................201111.001111107200100000
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................20191.0091091000000000
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................21187.00870292337970000
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................18179.00796301111201000
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................22160.006001113331200000
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................21148.0048036053220000
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................19146.00462801411200000
.........................................................................................................................................................AATCACAGGATTATACTGG.....................................................................................................19114.0014140000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................23111.001105420000000
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................19111.001104150010000
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................2218.00805300000000
...........................................................................................................................................................TCACAGGATTATACTGTGA...................................................................................................1916.00606000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2216.00606000000000
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................1916.00605000010000
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................2116.00621300000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................2316.00602201010000
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................1916.00606000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2215.00504100000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................2215.00504100000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................2115.00505000000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................2315.00501121000000
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................2014.00401210000000
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................1914.00404000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2214.00401300000000
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................2013.00301002000000
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1813.00301101000000
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................1813.00303000000000
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................1912.00201100000000
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................2012.00202000000000
.........................................................................................................................................................AATCACAGGATTATACTGTA....................................................................................................2012.00220000000000
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2312.00202000000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................2212.00201010000000
.......................................................................................................................................TTTCCT-TTTGCAACTCAAA......................................................................................................................1912.00201100000000
...........................................................................................................................................................TCACAGGATTATACTGTGAG..................................................................................................2012.00202000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGC.................................................................................................2312.00200200000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................2312.00202000000000
................................................................................................................TCGCAGTATATTTTTGTGTTTT...........................................................................................................................................2212.00201010000000
.........................................................................................................................................................AATCACAGGATTATACTGTTT...................................................................................................2111.00100000100000
.........................................................................................................................................................................................TGCCA---GCAGCAG---AAAG--TGACT...........................................................2111.00110000000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGAA........................................................................................................................................2411.00100010000000
.........................................................................................................................................................AATCACAGGATTATACTGTGATT.................................................................................................2311.00101000000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTTCCT-...................................................................................................................................2811.00101000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAGG.................................................................................................2211.00101000000000
................................................................................................................................................TGCAACTCAAATCACAGGATTATACTG......................................................................................................2711.00101000000000
........................................................................................................................................................AAATCACAGGATTATACTG......................................................................................................1911.00101000000000
...............................................................................................................................................TTGCAACTCAAATCACAGGATTATAC........................................................................................................2611.00101000000000
..............................................................................................................................................................CAGGATTATACTGTGAGA.................................................................................................1811.00101000000000
........................................................................................GGAATCA---CACGTCTCGACGCCT................................................................................................................................................................2211.00101000000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAT..................................................................................................2111.00101000000000
............................................................................................................................................................CACAGGATTATACTGTGA...................................................................................................1811.00101000000000
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1811.00101000000000
...........................................................................A---TGGGG----GGAATCA---CACGTCTCGACGCCT................................................................................................................................................................2811.00100100000000
..................................................................................................................GCAGTATATTTTTGTGTTTTC..........................................................................................................................................2111.00100000010000
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2111.00100001000000
..........................................................................................................................................................ATCACAGGATTATACTGTGAA..................................................................................................2111.00101000000000
..................................................................................................................GCAGTATATTTTTGTGTT.............................................................................................................................................1811.00101000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2211.00101000000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAGAT................................................................................................2411.00100100000000
.................................................................................GGG----GGAATCA---CACGTCTCGACGCCT................................................................................................................................................................2511.00100100000000
.........................................................................................GAATCA---CACGTCTCGACGCCT................................................................................................................................................................2111.00101000000000
................................................................................GGGG----GGAATCA---CACGTCTCGACGCCT................................................................................................................................................................2611.00100100000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTAA.........................................................................................................................................2311.00100010000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGC.........................................................................................................................................2311.00100100000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2211.00101000000000
.........................................................................................................................................................AATCACAGGATTATACTTGA....................................................................................................2060.50300300000000
.......................................................................................................................................TTTCCT-TTTGCAACTCAAG......................................................................................................................1920.50100100000000
droEre2
CTCCCCA----------------CCAAAGTGCTT--TGC--------------------CCGCCGTCCGGATGATA---TGGGG----GGAATCA---CACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAAATCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCGCCAGCAGCAG---AAAG--TGACTGACC-AGATT---------TGT---------ATTATA-T----CGATCTGCT-AGTATTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................CGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2218615.0086159407586156185450639
.........................................................................................................................................................AATCACAGGATTATACTGTGA...................................................................................................2111217.0012176906246484030130
.........................................................................................................................................................AATCACAGGATTATACTGT.....................................................................................................191506.005061351521261501590
.................................................................................................................CGCAGTATATTTTTGTGTTTT...........................................................................................................................................211399.003998741715672090
..................................................................................................................GCAGTATATTTTTGTGTTTTG..........................................................................................................................................211143.001439103024250
.................................................................................................................CGCAGTATATTTTTGTGTTTTT..........................................................................................................................................221120.001204053490140
.........................................................................................................................................................AATCACAGGATTATACTGTGAG..................................................................................................221115.001158210141413
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTT........................................................................................................................................241105.0010540013691
.........................................................................................................................................................AATCACAGGATTATACTGTG....................................................................................................20183.0083540402221
.................................................................................................................CGCAGTATATTTTTGTGTTT............................................................................................................................................20167.00671213214350
.................................................................................................................CGCAGTATATTTTTGTGTTTTGT.........................................................................................................................................23154.005420208537
.........................................................................................................................................................AATCACAGGATTATACTGTGAGT.................................................................................................23142.004230012531
..........................................................................................................................................................ATCACAGGATTATACTGTGA...................................................................................................20135.003535000000
.................................................................................................................CGCAGTATATTTTTGTGTT.............................................................................................................................................19127.002720239110
....................................................................................................................AGTATATTTTTGTGTTTTG..........................................................................................................................................19122.00229011650
.................................................................................................................CGCAGTATATTTTTGTGTTTTGA.........................................................................................................................................23121.00212020278
.........................................................................................................................................................AATCACAGGATTATACTG......................................................................................................18119.001952000120
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTT.......................................................................................................................................25114.001400000113
.......................................................................................................................................................CAAATCACAGGATTATACTGTGA...................................................................................................23113.00137301020
...................................................................................................................CAGTATATTTTTGTGTTTTG..........................................................................................................................................20112.00125000250
.................................................................................................................CGCAGTATATTTTTGTGT..............................................................................................................................................18111.00110000290
.........................................................................................................................................................AATCACAGGATTATACTGTGAGA.................................................................................................23111.001110000010
.........................................................................................................................................................AATCACAGGATTATACTGTGAA..................................................................................................22111.001110000010
..................................................................................................................GCAGTATATTTTTGTGTTTT...........................................................................................................................................20110.00108010010
.........................................................................................................................................................AATCACAGGATTATACTGA.....................................................................................................1919.0097000020
..........................................................................................................................................................ATCACAGGATTATACTGTGAG..................................................................................................2118.0088000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTA..........................................................................................................................................2218.0083000230
..........................................................................................................................................................ATCACAGGATTATACTGTGAGT.................................................................................................2217.0073001030
.................................................................................................................CGCAGTATATTTTTGTGTTG............................................................................................................................................2017.0070000250
.........................................................................................................................................................AATCACAGGATTATACTGTGT...................................................................................................2117.0070000160
.................................................................................................................CGCAGTATATTTTTGTGTTTTTG.........................................................................................................................................2316.0060000150
..........................................................................................................................................................ATCACAGGATTATACTGTGAGA.................................................................................................2216.0065000010
.................................................................................................................CGCAGTATATTTTTGTGTTTG...........................................................................................................................................2116.0061000320
.........................................................................................................................................................AATCACAGGATTATACTGC.....................................................................................................1916.0060510000
..........................................................................................................................................................ATCACAGGATTATACTGTG....................................................................................................1916.0065000010
................................................................................................................TCGCAGTATATTTTTGTGTTTTG..........................................................................................................................................2316.0061010040
.....................................................................................................................GTATATTTTTGTGTTTTG..........................................................................................................................................1815.0051000220
........................................................................................................................................................AAATCACAGGATTATACTGTGA...................................................................................................2214.0043100000
.........................................................................................................................................................AATCACAGGATTATACTGTGAT..................................................................................................2214.0044000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTC..........................................................................................................................................2214.0042002000
.......................................................................................................................................................CAAATCACAGGATTATACTGTG....................................................................................................2214.0044000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGG.........................................................................................................................................2313.0032000010
...........................................................................................................................................................TCACAGGATTATACTGTGA...................................................................................................1913.0033000000
...........................................................................................................................................................TCACAGGATTATACTGTGAGA.................................................................................................2113.0033000000
..........................................................................................AATCA---CACGTCTCGACGCCT................................................................................................................................................................2013.0030100110
..........................................................................................................................................................ATCACAGGATTATACTGT.....................................................................................................1813.0033000000
.........................................................................................................................................................AATCACAGGATTATACTGTT....................................................................................................2013.0031000020
...................................................................................................................CAGTATATTTTTGTGTTTTGTT........................................................................................................................................2213.0032000100
.........................................................................................................................................................AATCACAGGATTATACTGTGAGC.................................................................................................2313.0030000003
..............................................................................................................................................................CAGGATTATACTGTGAG..................................................................................................1712.0020000002
.............................................................................................................................................................ACAGGATTATACTGTGAG..................................................................................................1812.0021000010
..................................................................................................................GCAGTATATTTTTGTGTTT............................................................................................................................................1912.0021000010
.........................................................................................GAATCA---CACGTCTCGACGCCT................................................................................................................................................................2112.0021100000
..................................................................................................................GCAGTATATTTTTGTGTTTTT..........................................................................................................................................2112.0020001010
.........................................................................................................................................................AATCACAGGATTATACTGTGG...................................................................................................2112.0021000010
...................................................................................G----GGAATCA---CACGTCTCGACGCCT................................................................................................................................................................2311.0011000000
.........................................................................................................................................................AATCACAGGATTATACTTGA....................................................................................................20101.00108000020
..................................................................................................................GCAGTATATTTTTGTGTTTTGC.........................................................................................................................................2211.0011000000
.........................................................................................................................................................AATCACAGGATTATACTGTGAC..................................................................................................2211.0011000000
...........................................................................................................................................................TCACAGGATTATACTGTGAG..................................................................................................2011.0011000000
...............................................................................................................................................................................ATGACCAGCGTGCCGCCAGCAGC...........................................................................2311.0010000010
...........................................................................................ATCA---CACGTCTCGACGCCT................................................................................................................................................................1911.0010000100
........................................................................................................................................................AAATCACAGGATTATACTGTG....................................................................................................2111.0011000000
........................................................................................................................................................AAATCACAGGATTATACTGT.....................................................................................................2011.0010100000
.......................................................................................................................................................CAAATCACAGGATTATACTGT.....................................................................................................2111.0010000100
...........................................................................................................................................................TCACAGGATTATACTGTGAGT.................................................................................................2111.0011000000
.....................................................................................................................GTATATTTTTGTGTTTTGT.........................................................................................................................................1911.0010000100
......................................................................................................................................................TCAAATCACAGGATTATACTG......................................................................................................2111.0010010000
.........................................................................................................................................................AATCACAGGATTATACTT......................................................................................................1811.0010000010
.........................................................................................................................................................AATCACAGGATTATACTGTA....................................................................................................2011.0010000100
............................................................................................................................................................CACAGGATTATACTGTGAG..................................................................................................1911.0010000010
.................................................................................................................CGCAGTATATTTTTGTGTTTTGTTTC......................................................................................................................................2611.0010001000
..........................................................................................................................................................ATCACAGGATTATACTGTGAA..................................................................................................2111.0011000000
.........................................................................................................................................................AATCACAGGATTATACTGTTG...................................................................................................2111.0011000000
.................................................................................................................CGCAGTATATTTTTGTGTTTTGC.........................................................................................................................................2311.0011000000
....................................................................................................................AGTATATTTTTGTGTTTT...........................................................................................................................................1811.0010000010
..........................................................................................................................................................ATCACAGGATTATACTGTGTT..................................................................................................2111.0011000000

Generated: 10/20/2015 at 11:45 PM