ID:

dmo-mir-306

 Coordinate:

scaffold_6500:7201957-7202027 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-44.6 -43.8 -43.8

Flybase annnotation

intron [Dmoj\GI17268-in]; utr5 [utr5_plus_2209]; pre_miRNA [Dmoj\mir-306-RM]; miRNA [Dmoj\miR-306-RA]; miRNA [Dmoj\miR-306-star-RB]

No Repeatable elements found

Sense Strand Reads

ATCAATATAGCTAGAGAGTGCCCGATTCATGATGTCCAGCACACGCTGCAGCTCAGGTACTTAGTGACTCTCAATCACATATTGCTTTGCATACTTTGAGGGTCGCTCTGTGCCTGTGCCGCCCGTGTTGCACACAGCCACACAATTGTGAATTCGAGTTCGAACTCCCCG

*************************************.(((((((..((.((.(((((((..((((((((((((........(((...)))....))))))))))))..))))))).)).)).)))).)))...************************************* 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 M046

female body

 V041

embryo

 V056

head

 V049

head

 V110

male body
....................................................TCAGGTACTTAGTGACTCTCA.................................................................................................. 21 0 1 49212.00 49212 23326 22712 2525 284 261 104
....................................................TCAGGTACTTAGTGACTCTCAA................................................................................................. 22 0 1 27227.00 27227 10170 14693 1577 419 266 102
....................................................TCAGGTACTTAGTGACTCTC................................................................................................... 20 0 1 8978.00 8978 6488 2067 150 142 101 30
....................................................TCAGGTACTTAGTGACTCTCAC................................................................................................. 22 1 1 3124.00 3124 2110 884 83 21 24 2
.................................................................................................GAGGGTCGCTCTGTGCCTGTGC.................................................... 22 0 1 2579.00 2579 1190 208 981 43 65 92
.....................................................CAGGTACTTAGTGACTCTCA.................................................................................................. 20 0 1 2226.00 2226 34 2185 5 2 0 0
....................................................TCAGGTACTTAGTGACTCTCAAA................................................................................................ 23 1 1 2119.00 2119 519 1495 80 10 7 8
.....................................................CAGGTACTTAGTGACTCTCAA................................................................................................. 21 0 1 1467.00 1467 8 1458 1 0 0 0
....................................................TCAGGTACTTAGTGACTCT.................................................................................................... 19 0 1 813.00 813 208 549 13 18 24 1
....................................................TGAGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 640.00 640 640 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAAAA............................................................................................... 24 2 1 629.00 629 64 549 9 5 1 1
....................................................TCAGGTACTTAGTGACTCTCACA................................................................................................ 23 2 1 485.00 485 318 150 16 1 0 0
....................................................TCAGGTACTTAGTGACTCTCAAT................................................................................................ 23 0 1 445.00 445 276 151 12 3 0 3
....................................................TCAGGTACTTAGTGACTCTCAAAAA.............................................................................................. 25 2 1 315.00 315 13 297 4 0 0 1
....................................................TGAGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 296.00 296 296 0 0 0 0 0
....................................................TCAGGGACTTAGTGACTCTCA.................................................................................................. 21 1 1 271.00 271 214 18 28 7 4 0
....................................................TCAGGTACTTAGTGACTCTCACT................................................................................................ 23 1 1 225.00 225 160 44 19 0 1 1
.....................................................CAGGTACTTAGTGACTCTC................................................................................................... 19 0 1 221.00 221 12 209 0 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGGGC.................................................... 22 1 1 219.00 219 0 0 188 15 16 0
....................................................TCAGGTACTTCGTGACTCTCA.................................................................................................. 21 1 1 204.00 204 187 1 14 0 2 0
....................................................TCAGGTACTTAGTGACTCTCAAC................................................................................................ 23 1 1 192.00 192 152 36 4 0 0 0
....................................................TCATGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 192.00 192 177 14 1 0 0 0
....................................................TCAGGTACTTAGTGACTCTCACC................................................................................................ 23 2 1 178.00 178 163 8 6 0 1 0
....................................................TGAGGTACTTAGTGACTCTC................................................................................................... 20 1 1 175.00 175 175 0 0 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTG..................................................... 21 0 1 160.00 160 30 45 39 12 28 6
....................................................TTAGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 157.00 157 152 4 0 0 1 0
.................................................................................................GGGGGTCGCTCTGTGCCTGTGC.................................................... 22 1 1 154.00 154 153 0 1 0 0 0
......................................................AGGTACTTAGTGACTCTCA.................................................................................................. 19 0 1 150.00 150 10 100 38 1 1 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTGG.................................................... 22 1 1 149.00 149 0 0 141 6 2 0
.....................................................CAGGTACTTAGTGACTCTCAAA................................................................................................ 22 1 1 147.00 147 0 147 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCT.................................................................................................. 21 1 1 139.00 139 69 52 4 10 4 0
....................................................TCAGGGACTTAGTGACTCTCAA................................................................................................. 22 1 1 138.00 138 95 9 14 14 5 1
....................................................TCAGGTACTTAGTTACTCTCA.................................................................................................. 21 1 1 136.00 136 119 14 2 0 1 0
....................................................TCCGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 131.00 131 128 0 1 1 0 1
....................................................TCAGGTACTTAGTGACTCTCAT................................................................................................. 22 1 1 129.00 129 67 53 1 5 1 2
................................TGTCCAGCACACGCTGCAGC....................................................................................................................... 20 0 1 106.00 106 93 13 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCCA................................................................................................. 22 1 1 101.00 101 2 0 65 5 29 0
....................................................GCAGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 100.00 100 92 6 1 1 0 0
....................................................TCAGGTACTTCGTGACTCTCAA................................................................................................. 22 1 1 98.00 98 89 1 8 0 0 0
....................................................TCAGGTACTTAGCGACTCTCA.................................................................................................. 21 1 1 94.00 94 72 15 6 1 0 0
....................................................TCATGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 89.00 89 84 5 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCACAA............................................................................................... 24 3 1 88.00 88 5 82 1 0 0 0
....................................................TCAGGCACTTAGTGACTCTCA.................................................................................................. 21 1 1 87.00 87 63 15 6 2 1 0
....................................................TTAGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 87.00 87 83 0 3 1 0 0
....................................................TCAGGTAATTAGTGACTCTCA.................................................................................................. 21 1 1 87.00 87 85 0 1 0 1 0
.....................................................CAGGTACTTAGTGACTCTCAC................................................................................................. 21 1 1 86.00 86 0 86 0 0 0 0
......................................................AGGTACTTAGTGACTCTCAA................................................................................................. 20 0 1 86.00 86 3 63 12 7 1 0
....................................................TCAGGTACTTAGTGATTCTCA.................................................................................................. 21 1 1 83.00 83 72 7 4 0 0 0
....................................................TCAGGGACTTAGTGACTCTC................................................................................................... 20 1 1 81.00 81 72 0 1 5 3 0
.................................................................................................GAGGGTCGCTCTGTGCCTGGGG.................................................... 22 2 1 81.00 81 0 0 75 4 2 0
....................................................CCAGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 80.00 80 72 8 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCC.................................................................................................. 21 1 1 72.00 72 19 16 25 1 11 0
....................................................TCAGGTACTTAGTGACTCC.................................................................................................... 19 1 1 70.00 70 70 0 0 0 0 0
....................................................TCAGGTACTTAGTGCCTCTCA.................................................................................................. 21 1 1 61.00 61 52 2 4 2 1 0
....................................................TCAGGTACTTAGAGACTCTCA.................................................................................................. 21 1 1 59.00 59 57 2 0 0 0 0
.....................................................CAGGTACTTAGTGACTCT.................................................................................................... 18 0 1 58.00 58 0 58 0 0 0 0
....................................................TCAGGTACTTAATGACTCTCA.................................................................................................. 21 1 1 58.00 58 7 47 2 0 2 0
....................................................TGAGGTACTTAGTGACTCTCAC................................................................................................. 22 2 1 55.00 55 55 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAAAAAA............................................................................................. 26 3 1 54.00 54 2 51 0 0 0 1
....................................................ACAGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 53.00 53 45 5 1 0 2 0
....................................................TCAGGAACTTAGTGACTCTCA.................................................................................................. 21 1 1 52.00 52 36 12 3 1 0 0
....................................................TCCGGTACTTAGTGACTCTC................................................................................................... 20 1 1 51.00 51 51 0 0 0 0 0
....................................................TCAGGTACTTAGTTACTCTC................................................................................................... 20 1 1 51.00 51 49 2 0 0 0 0
....................................................TCCGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 50.00 50 48 1 0 0 1 0
....................................................TCAGTTACTTAGTGACTCTCA.................................................................................................. 21 1 1 50.00 50 36 13 1 0 0 0
.....................................................CAGGTACTTAGTGACTCTCAAAA............................................................................................... 23 2 1 49.00 49 2 47 0 0 0 0
....................................................TCAGGTACTTACTGACTCTCA.................................................................................................. 21 1 1 49.00 49 28 20 1 0 0 0
....................................................TCAGGTACTTAGTGACTCTTA.................................................................................................. 21 1 1 47.00 47 40 3 3 0 1 0
....................................................TCAGGTACTTAGCGACTCTCAA................................................................................................. 22 1 1 46.00 46 31 11 3 0 1 0
....................................................TCAGGTACTTAGTTACTCTCAA................................................................................................. 22 1 1 45.00 45 38 6 0 0 1 0
....................................................TCAGGTACTTACTGACTCTCAA................................................................................................. 22 1 1 45.00 45 24 21 0 0 0 0
....................................................TCAGGCACTTAGTGACTCTCAA................................................................................................. 22 1 1 44.00 44 24 8 3 6 3 0
....................................................TCAGGTACTTAATGACTCTCAA................................................................................................. 22 1 1 44.00 44 7 36 1 0 0 0
...................................................CTCAGGTACTTAGTGACTCTCA.................................................................................................. 22 0 1 43.00 43 25 16 2 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTGCC................................................... 23 0 1 43.00 43 0 0 36 3 4 0
....................................................TCAGGTACTTAGTCACTCTCA.................................................................................................. 21 1 1 43.00 43 36 6 0 1 0 0
....................................................TTAGGTACTTAGTGACTCTC................................................................................................... 20 1 1 43.00 43 41 2 0 0 0 0
....................................................TCAGGTACTTAGGGACTCTCA.................................................................................................. 21 1 1 43.00 43 26 14 2 1 0 0
....................................................TCATGTACTTAGTGACTCTC................................................................................................... 20 1 1 42.00 42 41 1 0 0 0 0
....................................................CCAGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 39.00 39 27 6 4 1 1 0
....................................................TCAGGTACTTAGTGACTCTCG.................................................................................................. 21 1 1 37.00 37 23 7 4 1 1 1
....................................................TCAGGTACTTAGTGACTCCCA.................................................................................................. 21 1 1 37.00 37 26 6 5 0 0 0
....................................................TCAGGTACTTCGTGACTCTC................................................................................................... 20 1 1 36.00 36 35 0 0 1 0 0
....................................................TCAGGTACTTAGTGACTCTCAATT............................................................................................... 24 1 1 35.00 35 25 7 3 0 0 0
....................................................TCAGGTACTTAGTGGCTCTCA.................................................................................................. 21 1 1 34.00 34 17 10 7 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAG................................................................................................. 22 1 1 33.00 33 5 24 3 0 1 0
....................................................GCAGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 31.00 31 28 3 0 0 0 0
....................................................TCGGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 31.00 31 20 9 2 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAACA............................................................................................... 24 2 1 31.00 31 19 11 1 0 0 0
....................................................TCAGTTACTTAGTGACTCTCAA................................................................................................. 22 1 1 30.00 30 22 8 0 0 0 0
....................................................TCAGGTACTTATTGACTCTCA.................................................................................................. 21 1 1 30.00 30 6 24 0 0 0 0
...............................ATGTCCAGCACACGCTGCAGC....................................................................................................................... 21 0 1 29.00 29 27 2 0 0 0 0
.....................................................TCAGTACTTAGTGACTCTCAA................................................................................................. 21 3 1 29.00 29 29 0 0 0 0 0
....................................................TCAGGTACTTAGCGACTCTC................................................................................................... 20 1 1 29.00 29 29 0 0 0 0 0
.....................................................CAGGTACTTAGTGACTCTCAAAAA.............................................................................................. 24 2 1 29.00 29 0 29 0 0 0 0
.................................................................................................GACGGTCGCTCTGTGCCTGTGC.................................................... 22 1 1 29.00 29 29 0 0 0 0 0
....................................................TCAGGTACCTAGTGACTCTCA.................................................................................................. 21 1 1 28.00 28 21 6 1 0 0 0
....................................................TCGGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 27.00 27 15 9 2 0 1 0
....................................................TCAGGTAATTAGTGACTCTCAA................................................................................................. 22 1 1 27.00 27 24 0 3 0 0 0
....................................................TCAGGTAATTAGTGACTCTC................................................................................................... 20 1 1 26.00 26 26 0 0 0 0 0
....................................................TCAGGTGCTTAGTGACTCTCA.................................................................................................. 21 1 1 26.00 26 17 7 1 1 0 0
....................................................TCAGGTGCTTAGTGACTCTCAA................................................................................................. 22 1 1 26.00 26 14 6 6 0 0 0
.................................................................................................GAGGGGCGCTCTGTGCCTGTGC.................................................... 22 1 1 24.00 24 20 0 3 1 0 0
....................................................TCAGGAACTTAGTGACTCTCAA................................................................................................. 22 1 1 24.00 24 16 4 3 0 0 1
....................................................ACAGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 24.00 24 21 2 0 1 0 0
..................................................................................................AGGGTCGCTCTGTGCCTGTGC.................................................... 21 0 1 23.00 23 5 17 1 0 0 0
....................................................TCAGGTACTTATTGACTCTCAA................................................................................................. 22 1 1 23.00 23 5 17 0 0 1 0
....................................................TCAGGTACTTAGAGACTCTCAA................................................................................................. 22 1 1 22.00 22 16 3 2 1 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTGT.................................................... 22 1 1 22.00 22 3 1 14 3 1 0
....................................................GCAGGTACTTAGTGACTCTC................................................................................................... 20 1 1 22.00 22 21 1 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCACCA............................................................................................... 24 3 1 22.00 22 17 5 0 0 0 0
....................................................TCAGGTACCTAGTGACTCTCAA................................................................................................. 22 1 1 22.00 22 17 2 3 0 0 0
...................................................GTCAGGTACTTAGTGACTCTCA.................................................................................................. 22 1 1 21.00 21 0 21 0 0 0 0
....................................................TCAGGTACTTAGTGATTCTCAA................................................................................................. 22 1 1 21.00 21 19 2 0 0 0 0
....................................................TCAGGTACTTAGTGACCCTCA.................................................................................................. 21 1 1 21.00 21 14 6 1 0 0 0
....................................................TCAGGGACTTAGTGACTCTCAC................................................................................................. 22 2 1 21.00 21 19 0 1 0 1 0
....................................................TCAGGTACTTAGTGCCTCTCAA................................................................................................. 22 1 1 20.00 20 17 0 0 2 1 0
....................................................TCAGGTACTTAGTGACTCTA................................................................................................... 20 1 1 20.00 20 3 17 0 0 0 0
....................................................TCAGTTACTTAGTGACTCTC................................................................................................... 20 1 1 20.00 20 19 1 0 0 0 0
....................................................TCAGGTAATTAGTGACTCTCAC................................................................................................. 22 2 1 20.00 20 20 0 0 0 0 0
.....................................................CAGGTACTTAGGGACTCTCA.................................................................................................. 20 1 1 20.00 20 0 20 0 0 0 0
.................................................................................................GTGGGTCGCTCTGTGCCTGTGC.................................................... 22 1 1 20.00 20 19 0 1 0 0 0
....................................................TCAGGCACTTAGTGACTCTC................................................................................................... 20 1 1 20.00 20 14 0 1 1 4 0
....................................................TCAGGTACTTAGTGACTC..................................................................................................... 18 0 1 20.00 20 13 7 0 0 0 0
....................................................TCAGGTACTTAGGGACTCTCAA................................................................................................. 22 1 1 19.00 19 8 9 1 0 1 0
....................................................TCAGGTACTTAGTGACTCTCAAG................................................................................................ 23 1 1 19.00 19 4 15 0 0 0 0
....................................................TCAGGTACTTCGTGACTCTCAC................................................................................................. 22 2 1 19.00 19 16 0 3 0 0 0
....................................................TCAGGTACTTAGTAACTCTCA.................................................................................................. 21 1 1 18.00 18 12 2 2 0 2 0
....................................................TCAGGTACTTAGTGACTCTCAATA............................................................................................... 24 1 1 18.00 18 9 9 0 0 0 0
.................................................................................................GAGTGTCGCTCTGTGCCTGTGC.................................................... 22 1 1 18.00 18 18 0 0 0 0 0
......................................................AGGTACTTAGTGACTCTC................................................................................................... 18 0 1 18.00 18 7 6 4 0 1 0
....................................................TCAGGTACTTAGAGACTCTC................................................................................................... 20 1 1 18.00 18 15 2 1 0 0 0
....................................................TCAGGTACTTGGTGACTCTCA.................................................................................................. 21 1 1 18.00 18 4 8 5 0 1 0
................................TTTCCAGCACACGCTGCAGC....................................................................................................................... 20 1 1 17.00 17 17 0 0 0 0 0
...................................................CTCAGGTACTTAGTGACTCTCAA................................................................................................. 23 0 1 17.00 17 3 13 1 0 0 0
....................................................TCATGTACTTAGTGACTCTCAC................................................................................................. 22 2 1 17.00 17 17 0 0 0 0 0
....................................................TCAGGTACTTAGTGCCTCTC................................................................................................... 20 1 1 17.00 17 16 0 0 1 0 0
....................................................CCAGGTACTTAGTGACTCTC................................................................................................... 20 1 1 17.00 17 16 1 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTTAA................................................................................................. 22 1 1 17.00 17 16 0 1 0 0 0
.......................................................GGTACTTAGTGACTCTCA.................................................................................................. 18 0 1 16.00 16 2 14 0 0 0 0
....................................................TCACGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 16.00 16 11 5 0 0 0 0
....................................................TCAGGTACTTACTGACTCTC................................................................................................... 20 1 1 16.00 16 14 2 0 0 0 0
....................................................TCAGCTACTTAGTGACTCTCAA................................................................................................. 22 1 1 16.00 16 14 2 0 0 0 0
...................................................TTCAGGTACTTAGTGACTCTCA.................................................................................................. 22 1 1 16.00 16 2 14 0 0 0 0
...................................................GTCAGGTACTTAGTGACTCTCAA................................................................................................. 23 1 1 15.00 15 0 15 0 0 0 0
....................................................TCAGGTACTTAGTGACTCCCAA................................................................................................. 22 1 1 15.00 15 9 4 1 1 0 0
....................................................TCAGGTACTTAGTGACCCTCAA................................................................................................. 22 1 1 15.00 15 5 5 5 0 0 0
....................................................TCAGGTACTTAGTGAATCTCAA................................................................................................. 22 1 1 15.00 15 1 5 7 0 2 0
....................................................TCAGGTACTTAGTCACTCTCAA................................................................................................. 22 1 1 15.00 15 12 2 1 0 0 0
....................................................TCAGGTACTTAGTAACTCTCAA................................................................................................. 22 1 1 14.00 14 8 1 2 0 3 0
....................................................TCAGGTACTTAGTGGCTCTCAA................................................................................................. 22 1 1 14.00 14 6 6 1 0 1 0
....................................................ACAGGTACTTAGTGACTCTC................................................................................................... 20 1 1 14.00 14 14 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCATT................................................................................................ 23 1 1 14.00 14 9 5 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAAAT............................................................................................... 24 2 1 14.00 14 11 3 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCGA................................................................................................. 22 1 1 14.00 14 6 4 1 2 1 0
....................................................TTAGGTACTTAGTGACTCTCAC................................................................................................. 22 2 1 13.00 13 13 0 0 0 0 0
....................................................TGAGGTACTTAGTGACTCTCAAA................................................................................................ 23 2 1 13.00 13 13 0 0 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGGGCC................................................... 23 1 1 13.00 13 0 0 10 1 2 0
....................................................TCAGGTACTTAGTGACTCGCA.................................................................................................. 21 1 1 13.00 13 10 0 3 0 0 0
.....................................................CAGGTACTTAGTGACTCTCAAT................................................................................................ 22 0 1 13.00 13 0 13 0 0 0 0
....................................................TCAGGTACTTAGTGACTTTCA.................................................................................................. 21 1 1 12.00 12 9 3 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAAAAAAA............................................................................................ 27 3 1 12.00 12 0 12 0 0 0 0
...................................................TTCAGGTACTTAGTGACTCTCAA................................................................................................. 23 1 1 12.00 12 0 12 0 0 0 0
....................................................TCAAGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 12.00 12 7 3 1 0 1 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTTC.................................................... 22 1 1 12.00 12 1 0 4 0 7 0
....................................................TCAGGTACTTAGTGATTCTC................................................................................................... 20 1 1 11.00 11 10 0 0 1 0 0
...................................................ATCAGGTACTTAGTGACTCTCAA................................................................................................. 23 1 1 11.00 11 0 11 0 0 0 0
....................................................TCAGGAACTTAGTGACTCTC................................................................................................... 20 1 1 11.00 11 10 1 0 0 0 0
....................................................CCAGGTACTTAGTGACTCTCAC................................................................................................. 22 2 1 11.00 11 11 0 0 0 0 0
...................................................CTCAGGTACTTAGTGACTCTC................................................................................................... 21 0 1 11.00 11 8 3 0 0 0 0
....................................................TCAGGTACTTAGTGACGCTCA.................................................................................................. 21 1 1 11.00 11 9 0 1 0 1 0
....................................................TCAGGTACTTAGTGACTCACAA................................................................................................. 22 1 1 11.00 11 6 2 2 1 0 0
....................................................TAAGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 11.00 11 3 2 6 0 0 0
....................................................TCAGCTACTTAGTGACTCTC................................................................................................... 20 1 1 11.00 11 11 0 0 0 0 0
....................................................TCAGGTACTTAGGGACTCTC................................................................................................... 20 1 1 11.00 11 9 1 0 0 0 1
.......................................................GGTACTTAGTGACTCTCAA................................................................................................. 19 0 1 10.00 10 0 10 0 0 0 0
....................................................TCAGGTACTTAGTGACTTTCAA................................................................................................. 22 1 1 10.00 10 8 2 0 0 0 0
....................................................TCAGATACTTAGTGACTCTCA.................................................................................................. 21 1 1 10.00 10 6 1 3 0 0 0
....................................................TCAGCTACTTAGTGACTCTCA.................................................................................................. 21 1 1 10.00 10 7 1 2 0 0 0
....................................................TCCGGTACTTAGTGACTCTCAC................................................................................................. 22 2 1 10.00 10 10 0 0 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTAC.................................................... 22 1 1 10.00 10 9 0 1 0 0 0
....................................................TCAGGTACTCAGTGACTCTCAA................................................................................................. 22 1 1 10.00 10 4 4 1 1 0 0
....................................................TCAGGTACTTAGTGACTCTCAATAA.............................................................................................. 25 1 1 10.00 10 0 9 1 0 0 0
.....................................................CAGGTACTTAGTGACTCTCACAA............................................................................................... 23 3 1 10.00 10 0 10 0 0 0 0
....................................................TCAGGTACTCAGTGACTCTCA.................................................................................................. 21 1 1 10.00 10 7 1 1 1 0 0
....................................................TCAGGTACTTAGTGAATCTCA.................................................................................................. 21 1 1 10.00 10 0 4 6 0 0 0
....................................................TCAGGTACTTAGTCACTCTC................................................................................................... 20 1 1 10.00 10 9 1 0 0 0 0
....................................................TCAGGTACTTGGTGACTCTCAA................................................................................................. 22 1 1 9.00 9 1 5 3 0 0 0
.....................................................CAGGTACTTAGTGACTCTCACA................................................................................................ 22 2 1 9.00 9 0 9 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCACAAA.............................................................................................. 25 3 1 9.00 9 3 6 0 0 0 0
....................................................TGAGGTACTTAGTGACTCTCACA................................................................................................ 23 3 1 9.00 9 9 0 0 0 0 0
....................................................TCAGGTACTTAGTTACTCTCAC................................................................................................. 22 2 1 9.00 9 9 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAATC............................................................................................... 24 0 1 9.00 9 6 2 0 0 0 1
....................................................TCAGGTACTTAGTGACTCTCAATAAA............................................................................................. 26 2 1 9.00 9 1 8 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTAA.................................................................................................. 21 1 1 9.00 9 4 5 0 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGCGC.................................................... 22 1 1 8.00 8 0 0 7 1 0 0
....................................................TCAGGTAACTAGTGACTCTCAA................................................................................................. 22 2 1 8.00 8 8 0 0 0 0 0
....................................................TCACGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 8.00 8 7 1 0 0 0 0
....................................................TGAGGTACTTAGTTACTCTCA.................................................................................................. 21 2 1 8.00 8 8 0 0 0 0 0
....................................................TCAGGTACTTAGTGTCTCTCA.................................................................................................. 21 1 1 8.00 8 3 0 5 0 0 0
................................TGTTCAGCACACGCTGCAGC....................................................................................................................... 20 1 1 8.00 8 8 0 0 0 0 0
.................................................................................................TAGGGTCGCTCTGTGCCTGTGC.................................................... 22 1 1 8.00 8 7 0 1 0 0 0
....................................................TCAGGGACTTAGTGACTCTCAAA................................................................................................ 23 2 1 8.00 8 6 2 0 0 0 0
.................................................................................................GAGGTTCGCTCTGTGCCTGTGC.................................................... 22 1 1 8.00 8 8 0 0 0 0 0
....................................................TCATGTACTTAGTGACTCTCAAA................................................................................................ 23 2 1 8.00 8 6 2 0 0 0 0
....................................................TCAGGTACTTAGCGACTCTCAC................................................................................................. 22 2 1 8.00 8 8 0 0 0 0 0
....................................................TCTGGTACTTAGTGACTCTCA.................................................................................................. 21 1 1 8.00 8 4 4 0 0 0 0
....................................................TCAGGTACTTAATGACTCTCAC................................................................................................. 22 2 1 7.00 7 0 7 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCATC................................................................................................ 23 2 1 7.00 7 2 4 0 0 1 0
....................................................TCAGGTACTTCGCGACTCTCA.................................................................................................. 21 2 1 7.00 7 7 0 0 0 0 0
....................................................TGAGGTACTTAGTGACTCTCAAT................................................................................................ 23 1 1 7.00 7 7 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTT................................................................................................... 20 1 1 7.00 7 6 1 0 0 0 0
....................................................TCAGGTACTTAGTGACGCTC................................................................................................... 20 1 1 7.00 7 6 1 0 0 0 0
.....................................................CAGGTACTTAGGGACTCTCAA................................................................................................. 21 1 1 7.00 7 0 7 0 0 0 0
....................................................TCAGGTACTTAGTGACTATCA.................................................................................................. 21 1 1 7.00 7 1 2 2 1 0 1
......................................................AGGTACTTAGTGACTCTCAC................................................................................................. 20 1 1 7.00 7 1 4 1 1 0 0
.....................................................CAGGTACTTAGTGACTCTCAAAAAA............................................................................................. 25 3 1 7.00 7 0 7 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCCC................................................................................................. 22 2 1 7.00 7 1 3 2 0 1 0
....................................................TCAGGTACTTATTGACTCTC................................................................................................... 20 1 1 7.00 7 2 4 0 0 1 0
....................................................TCAGGTACTAAGTGACTCTCA.................................................................................................. 21 1 1 7.00 7 6 1 0 0 0 0
....................................................TCAGGTACTTAGTGAGTCTCA.................................................................................................. 21 1 1 7.00 7 2 3 2 0 0 0
....................................................TCAGGTACTTAGTGACCCTC................................................................................................... 20 1 1 7.00 7 6 1 0 0 0 0
....................................................TCAGGTATTTAGTGACTCTCA.................................................................................................. 21 1 1 7.00 7 5 1 1 0 0 0
....................................................TCAGGTACTTAGTGTCTCTCAA................................................................................................. 22 1 1 7.00 7 1 3 3 0 0 0
....................................................TCAGGTACTTAGTGGCTCTC................................................................................................... 20 1 1 7.00 7 2 3 2 0 0 0
....................................................TCAGGCACTTAGTGACTCTCAC................................................................................................. 22 2 1 7.00 7 2 0 2 1 2 0
....................................................TCAGGTACTTAGTGACTCACA.................................................................................................. 21 1 1 6.00 6 5 1 0 0 0 0
....................................................TCAGGTACCTAGTGACTCTC................................................................................................... 20 1 1 6.00 6 5 1 0 0 0 0
....................................................TCGGGTACTTAGTGACTCTC................................................................................................... 20 1 1 6.00 6 5 1 0 0 0 0
....................................................TGCGGTACTTAGTGACTCTCA.................................................................................................. 21 2 1 6.00 6 6 0 0 0 0 0
................................................GATCTCAGGTACTTAGTGACTCTCA.................................................................................................. 25 2 1 6.00 6 3 0 3 0 0 0
....................................................TCAGTTACTTAGTGACTCTCAAA................................................................................................ 23 2 1 6.00 6 6 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCACCT............................................................................................... 24 3 1 6.00 6 5 0 1 0 0 0
....................................................TCAGGTGCTTAGTGACTCTCAC................................................................................................. 22 2 1 6.00 6 5 1 0 0 0 0
................................................................................................TGAGGGTCGCTCTGTGCCTGTG..................................................... 22 0 1 6.00 6 2 1 3 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTGCT................................................... 23 1 1 6.00 6 3 1 2 0 0 0
....................................................TCAGGGACTTAGTGACTCTCT.................................................................................................. 21 2 1 6.00 6 2 0 3 0 1 0
....................................................TAAGGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 6.00 6 0 2 4 0 0 0
....................................................TCAGGGACTTAGTGACTCT.................................................................................................... 19 1 1 6.00 6 4 1 1 0 0 0
.................................................................................................GAGGGTCGCTCTGTCCCTGTGC.................................................... 22 1 1 6.00 6 4 0 2 0 0 0
.................................................................................................GAGGGTCGCTCTGTGCCTGTGA.................................................... 22 1 1 5.00 5 3 1 0 0 0 1
....................................................TGAGGTACTTAGTGACTCTCAAC................................................................................................ 23 2 1 5.00 5 5 0 0 0 0 0
....................................................TCAGGTACTTAATGACTCTC................................................................................................... 20 1 1 5.00 5 3 2 0 0 0 0
..........................................................................TCACATATTGCTTTGCATACTTT.......................................................................... 23 0 1 5.00 5 4 1 0 0 0 0
....................................................TCAGGTACTTTGTGACTCTCA.................................................................................................. 21 1 1 5.00 5 2 1 2 0 0 0
...................................................ATCAGGTACTTAGTGACTCTCA.................................................................................................. 22 1 1 5.00 5 0 5 0 0 0 0
....................................................TAAGGCACTTAGTGACTCTCA.................................................................................................. 21 2 1 5.00 5 0 0 3 2 0 0
....................................................ACAGGTACTTAGTGACTCTCAC................................................................................................. 22 2 1 5.00 5 5 0 0 0 0 0
....................................................TCAGGTACTTCGTGACTCTCAAA................................................................................................ 23 2 1 5.00 5 5 0 0 0 0 0
....................................................TCAGGTACTTCGTGACTCTCAAT................................................................................................ 23 1 1 5.00 5 5 0 0 0 0 0
.....................................................CAGGTACTTAGAGACTCTCA.................................................................................................. 20 1 1 5.00 5 0 5 0 0 0 0
....................................................TGAGGTACTTCGTGACTCTCA.................................................................................................. 21 2 1 5.00 5 5 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCATA................................................................................................ 23 2 1 5.00 5 4 1 0 0 0 0
....................................................TCAGGTGCTTAGTGACTCTC................................................................................................... 20 1 1 5.00 5 5 0 0 0 0 0
.................................................................................................GGGGGTCGCTCTGTGCCTGTG..................................................... 21 1 1 5.00 5 4 0 0 0 1 0
....................................................TCAGGTACTTAGTGACTCTCAAAC............................................................................................... 24 1 1 5.00 5 2 3 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCAACT............................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
....................................................TCAGATACTTAGTGACTCTCAA................................................................................................. 22 1 1 5.00 5 5 0 0 0 0 0
....................................................TCAGGTACTTAGCGACTCTCAAA................................................................................................ 23 2 1 5.00 5 4 1 0 0 0 0
....................................................GCAGGTACTTAGTGACTCTCAC................................................................................................. 22 2 1 5.00 5 5 0 0 0 0 0
.................................................................................................GAGGGTCGCCCTGTGCCTGTGC.................................................... 22 1 1 5.00 5 2 0 3 0 0 0
......................................................AGGTACTTAGTGACTCTCAAA................................................................................................ 21 1 1 5.00 5 0 5 0 0 0 0
.....................................................CAGGTACTTAGCGACTCTCA.................................................................................................. 20 1 1 5.00 5 0 5 0 0 0 0
....................................................TCAGGTACTTAGTTACTCTCAAA................................................................................................ 23 2 1 5.00 5 3 1 0 0 1 0
....................................................TCAGGTACTTAGAGACTCTCAC................................................................................................. 22 2 1 5.00 5 4 0 0 1 0 0
.....................................................TCAGTACTTAGTGACTCTCA.................................................................................................. 20 3 8 4.50 36 33 3 0 0 0 0
....................................................TCAGGTAACTAGTGACTCTCA.................................................................................................. 21 2 1 4.00 4 4 0 0 0 0 0
.................................................................................................GAGGGTCGCTCTGGGCCTGTGC.................................................... 22 1 1 4.00 4 4 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTATCAA................................................................................................. 22 1 1 4.00 4 2 1 0 0 1 0
....................................................TGAGGTACTTAGTGACTCTCACT................................................................................................ 23 2 1 4.00 4 4 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCTCTA................................................................................................. 22 1 1 4.00 4 0 0 4 0 0 0
...................................................................................................GGGTCGCTCTGTGCCTGTGC.................................................... 20 0 1 4.00 4 2 2 0 0 0 0
....................................................TCAGGTATTTAGTGACTCTCAA................................................................................................. 22 1 1 4.00 4 2 1 0 1 0 0
....................................................TCAGGTACTTAGTGACTCTCACTT............................................................................................... 24 2 1 4.00 4 2 1 0 1 0 0
....................................................TCAGGCACTTAGTGACTCT.................................................................................................... 19 1 1 4.00 4 0 1 0 0 3 0
.................................................................................................GAGGGTCCCTCTGTGCCTGTGC.................................................... 22 1 1 4.00 4 3 0 1 0 0 0
....................................................TCAGGTACTTAGTAACTCTC................................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0
....................................................TCAGGTACTGAGTGACTCTCAA................................................................................................. 22 1 1 4.00 4 0 0 2 2 0 0
....................................................TCAGGTACTTACTGACTCTCAC................................................................................................. 22 2 1 4.00 4 2 2 0 0 0 0
....................................................TCAGGGACTTACTGACTCTCA.................................................................................................. 21 2 1 4.00 4 1 0 2 1 0 0
....................................................TCAGGTACTTAGTGACTTTC................................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0
....................................................TCAGGGACTTAGTGAATCTCA.................................................................................................. 21 2 1 4.00 4 0 0 3 1 0 0
....................................................TCAAGTACTTAGTGACTCTCAA................................................................................................. 22 1 1 4.00 4 2 0 0 0 2 0
....................................................TCAGGTACTTCGTGACTCTCACA................................................................................................ 23 3 1 4.00 4 4 0 0 0 0 0
....................................................GCAGGTACTTAGTGACTCTCAAA................................................................................................ 23 2 1 4.00 4 3 1 0 0 0 0
....................................................TCAGGTACTTAGTGACACTC................................................................................................... 20 1 1 4.00 4 2 1 0 1 0 0
.................................................................................................GAGGGCCGCTCTGTGCCTGTGC.................................................... 22 1 1 4.00 4 1 0 2 0 0 1
...................................................TTCAGGTACTTAGTGACTCTC................................................................................................... 21 1 1 4.00 4 0 4 0 0 0 0
.....................................................CAGGTACTTAGTCACTCTCA.................................................................................................. 20 1 1 4.00 4 0 4 0 0 0 0
....................................................TCAGGTAATTAGTGACGCTCA.................................................................................................. 21 2 1 4.00 4 4 0 0 0 0 0
....................................................TCAGGTACTTAGTGACTCAA................................................................................................... 20 2 1 4.00 4 2 1 1 0 0 0
....................................................TCAGGTACTTCGTGACTCTCC.................................................................................................. 21 2 1 4.00 4 0 0 2 0 2 0
....................................................TCAGGTAGTTAGTGACTCTCAA................................................................................................. 22 1 1 4.00 4 2 0 1 1 0 0
.................................................................................................GAGGGTCGCTATGTGCCTGTGC.................................................... 22 1 1 4.00 4 3 0 1 0 0 0
...............................CTGTCCAGCACACGCTGCAGC....................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0
....................................................TGAGGGACTTAGTGACTCTCA.................................................................................................. 21 2 1 3.00 3 3 0 0 0 0 0
.................................................................................................GGGGGTCACTCTGTGCCTGTG..................................................... 21 2 1 3.00 3 0 3 0 0 0 0
.................................................................................................GAGGGGCGCTCTGTGCCTGGGC.................................................... 22 2 1 3.00 3 0 0 2 1 0 0
.................................................................................................GAGGGTCGCTCTTTGCCTGTGC.................................................... 22 1 1 3.00 3 2 1 0 0 0 0
.....................................................CAGGTACTTAGAGACTCTCAA................................................................................................. 21 1 1 3.00 3 0 3 0 0 0 0
.................................................................................................GAGGGTCGCTCTATGCCTGTGC.................................................... 22 1 1 3.00 3 1 0 2 0 0 0

Anti-sense strand reads

TAGTTATATCGATCTCTCACGGGCTAAGTACTACAGGTCGTGTGCGACGTCGAGTCCATGAATCACTGAGAGTTAGTGTATAACGAAACGTATGAAACTCCCAGCGAGACACGGACACGGCGGGCACAACGTGTGTCGGTGTGTTAACACTTAAGCTCAAGCTTGAGGGGC

*************************************.(((((((..((.((.(((((((..((((((((((((........(((...)))....))))))))))))..))))))).)).)).)))).)))...************************************* 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo

 V049

head

 V110

male body
...............................................................................................AACTCCCAGCGAGACACGGACA...................................................... 22 0 1 4.00 4 1 2 0 1
................................................................................................ACTCCCAGCGAGACACGGACA...................................................... 21 0 1 3.00 3 1 0 1 1
................................................................................................ACTCCCAGCGAGACACGAACA...................................................... 21 1 1 1.00 1 0 0 1 0
..................................................CGAGTCCATGAATCACTGAGAGT.................................................................................................. 23 0 1 1.00 1 1 0 0 0
.....................................................................................................................CGGCGGGCACAACGTGTGTC.................................. 20 0 1 1.00 1 1 0 0 0
.................................................................................................CTCCCAGCGAGACACGGACA...................................................... 20 0 1 1.00 1 0 1 0 0
...........CTCTCTCACGGGCTAAGTACTAC......................................................................................................................................... 23 1 1 1.00 1 1 0 0 0
...............................................................................................AACTCCCAGCGAGACACGGACAAA.................................................... 24 2 1 1.00 1 1 0 0 0
...............................................................................................AACTCCCAGCGAGGCACGGGCA...................................................... 22 2 1 1.00 1 1 0 0 0
.................................................................TTGAGAGTTAGCGTATAA........................................................................................ 18 2 20 0.10 2 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6500:7201907-7202077 + dmo-mir-306 Known_mirbase ATCAATA--T-----------------AG--------CTAGA-G---A--GT------GCCCGAT--TCATGA-------------TGTC--CAGCACACGCTG-CAGCTCAGGTACTTAGTGACTCTCAATCACATATTGCTTTGCAT--ACTTTGAGGGTCGCTCTGTGCCTGTGCCGCCCGTGTTGCACACAGCCACAC-----AATTGTGAATTCGAGT---------------TCGAACTCCC-------CG
droVir3 scaffold_12963:12863171-12863345 - dvi-mir-306 Known_mirbase AGTGCCG--T-----------------GT--------------CAGTT--GTGC---------TT--TTCCGTGCTGAACTCCTCCCGCC--CTGCACACCCCG-CTGCTCAGGTACTTAGTGACTCTCAATCATCTATTGCTTTGCAT--ACCTTGAGGGTCGCTCTGTGCCTGTGCCGCCTGTGCTGCACAA-CCAACGA--CGAGATGCATACGTGACCC---------------------TGAC-------CG
droGri2 scaffold_14978:830879-831040 + dgr-mir-306 Known_mirbase ATCA--G--T-----------------GT--------TA-AAT-------GT------GGAAAAA--CCA---ATCCA---------ATCCGCTGCACACGTTG-CTGCTCAGGTACTTAGTGACTCTCAATTCAACATTGTATTGCAC-GCCTTTGAGGGTCGCTCTGTGCCTGTGTTGCACGTGTTGCATTC-ACACCAT---CCGAGTGATTTGTG-------------------------TCCT-------TT
droWil2 scf2_1100000004874:29015-29150 - dwi-mir-306-1 Known_mirbase ATTCATA--A----GG---TGACGAAA----AAGTGACTAT-ACAAAGTGAT------ACGAAAT--ATCTCTG---C---------------------CTAAA-CAGCTCAGGTACTTAGTGACTCTCAAA--------GAATATATCTAGACTTGAGAGACGCTCTGTACCTAGACTGTTG-TG---------T-------------------------------------------------CTG-------CG
dp5 4_group3:8443786-8443927 + dps-mir-306 Known_mirbase TTCG-AG--T-----------------GT--------TTAT-CG---A--GT------GATTTAT--CTACAAGCACA---------------------CTTTGCCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATCTTGAGAGTCTCTCTGTGCCTGCACTGGCGGTGGTGCAACT-GCAACGA-TTAAGGGTGTTC----------------------------------------CT
droPer2 scaffold_1:9894905-9895078 + dpe-mir-306 Known_mirbase TTCG-AG--T-----------------GT--------TTAT-CG---A--GT------GATTTAT--CTACAAGCACA---------------------CTTTGCCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATCTTGAGAGTCTCTCTGTGCCTGCACTGGCGGTGGTGCAACT-GCAACGA-TTAAGGGTGTTCCTAATAAGTGTTATATTTAGAGTGTTAT-ATCG-------AA
droAna3 scaffold_12916:15864866-15864975 - dan-mir-306 Known_mirbase ATTC-CGATT-----------------------------GGAT-------GT------GAAAGTG--CCAGAAGTCCA---------------------CTTGG-TAGCTCAGGTACTTAGTGACTCTCAAT--------GCATTTGAC--ATTTTGGGAGCCACTTTGTGCCTGGGCCATCAGTGC----------------------------------------------------------------------
droBip1 scf7180000396717:103569-103706 - ATGG-AA--A-----------------AATATTG---TGA---A---------------AGTTGACCCGAAAAGTCCA---------------------CTTAA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GTATTTGAC--ATTTTGAGAGCCACTTTGTGCCTGGGCCATCAGTGTGGCTATA-TCTTCTA--T---AT----A-----------------------------ATCA-------TG
droKik1 scf7180000302382:529351-529467 + AGT----------------------------------------------------------------------GCCCA--------------CTTG---A-TGA-TGGCTCAGGTACTTAGTGACTCTCAAA--------TGCCTTGAAAAGTTTTGAGAGTCTCTCTGTGCCTAGGCTGTAGGTGAGGCAAAC-TCAACTA--C---AT----AC----------------------------ATCAAT-----TA
droFic1 scf7180000454078:624018-624190 + AAAG-TG--A---------ATATGGAT----CAGTGGCTATAGC---A--GT------GCATATT--TTCTGTGCTTG---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GGATTTCAC--ATTTTGGGAGTCGCTCTGTGCCTGTGCTGCAAGTAAGACATTCTCCTACAA-AAAAAAGTGTTAAAAATAAG---------------------TTGA-TTACAACA
droEle1 scf7180000490579:645532-645686 - ATCAGTA--T-----------------AT--------TTATAAG---C--GTGC-----ATTTGA--TTTTAAGCCCA---------------------CTTGA-TTGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGAGTCGCTCTGTGCCTGTGCTGCCAGTGAAGCAATG-TCTACAG--GTAAAGTGATAAATATAGT---------------------TTCA-------TC
droRho1 scf7180000768553:9366-9515 + GTGT--A-------------------------------TATCTCAGTA--GTGC-----ATATAT--TTTTGAGCCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATTTTGGGAGTCGCTCTGTGCCTGTGCTGCCAGTGAAGCATTC-TCCCCAT--TAAAAGTGTTAACTATAA-----------------------TTG-------CA
droBia1 scf7180000301468:857959-858127 + CTTA-TACATGCAAAGTGCTTGTGGAT----AAGTGTTT-TATCAGTG----GA-----AAATGA--ATTCAAGCTTA---------------------CTAGG-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ACTTTGGGACTCGCTCTGTACCTGCGCTGCCGGTGAGGCCCTC-TCTACAA--AGAAAT-ACAAA----------------------------ATAG-------TA
droTak1 scf7180000415914:422633-422777 + ATTA-TA---------------------------------TATC---A--GTGC----ATATCTC--TTTTAAGCCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATTTTGGGAGTCGCTCTGTGCCTGCGCCGCCAGTAAGGCATTC-TCCACAGAAATAAAGTGTTAAAT---------------------------AAA-------TA
droEug1 scf7180000408961:272307-272474 + ATAT--GTATATAAAGTACAAATGGAT----CAAT---------------GTGCAAGTGACTATT--TTTCAAGTCCA---------------------CTTAA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GATTTTGAC--AATTTGGGAGTCGCTCTGTGCCTGTGCTGCTAGTGAGGCAATCTTCTACAA--ATAAAGTGAAT--TTA-----------------------CATAT-------CA
dm3 chr2L:16698373-16698517 + dme-mir-306 Known_mirbase TTGT--G--T-----------------GT--------TTAAATC---A--GT------GAATAGT--TTAAAAGTCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAA-TCTACAA--ATAAAGTGATAA----------------------------TCAG-------TG
droSim2 2l:16265198-16265353 + dsi_274 confident TTTAGTG--T-----------------GT--------TTAAATC---A--GT------GAATAGT--TTAAAAGTCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAA-TCTACAA--ATAAAGTGATAAGTACCAG---------------------TGAA-TT----AC
droSec2 scaffold_7:345388-345530 + dse-mir-306 Known_mirbase TTTAGTG--T-----------------GT--------TTAAATC---A--GT------GAACAGT--TTAAAATTCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAA-TCTACAA--ATAAAGGGATAAGT---------------------------------------
droYak3 2R:4404553-4404697 - dya-mir-306 Known_mirbase TAGT--GCAC----GATTCGATTAAAT----CTGTGTATAAATC---A--GT------GAAAAGT--TTTAAAGTCCA---------------------CTCGG-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTAGGACATAA-TCCACA--------------------------------------------------------
droEre2 scaffold_4845:19768024-19768150 + der-mir-306 Known_mirbase ATCT--G--T-----------------GT--------ACAAGTC---A--GT------GAATAGT--TTAAGTGTCCA---------------------CTCGG-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACGCAA-TCAACAA-------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATCAATA--T-----------------AG--------CTAGA-G---A--GT------GCCCGAT--TCATGA-------------TGTC--CAGCACACGCTG-CAGCTCAGGTACTTAGTGACTCTCAATCACATATTGCTTTGCAT--ACTTTGAGGGTCGCTCTGTGCCTGTGCCGCCCGTGTTGCACACAGCCACAC-----AATTGTGAATTCGAGT---------------TCGAACTCCC-------CGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................21149212.004921222712252526128423326104
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................22127227.002722714693157726641910170102
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2018978.0089782067150101142648830
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................2213124.00312488483242121102
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGC...............................................................................2212579.0025792089816543119092
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................2012226.0022262185502340
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA.............................................................................................................................2312119.0021191495807105198
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................2111467.001467145810080
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................191813.008135491324182081
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAA............................................................................................................................241629.00629549915641
.............................................................................................................TCAGGTACTTAGTGACTCTCACA.............................................................................................................................231485.0048515016013180
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT.............................................................................................................................231445.0044515112032763
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................191221.00221209000120
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC.............................................................................................................................231192.00192364001520
.............................................................................................................TCAGGTACTTAGTGACTCTCACC.............................................................................................................................231178.0017886101630
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTG................................................................................211160.0016045392812306
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................191150.001501003811100
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGG...............................................................................221149.0014901412600
..............................................................................................................CAGGTACTTAGTGACTCTCAAA.............................................................................................................................221147.0014714700000
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................211139.00139524410690
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................221129.0012953115672
......................................................................................TGTC--CAGCACACGCTG-CAGC....................................................................................................................................................201106.0010613000930
.............................................................................................................TCAGGTACTTAGTGACTCTCACAA............................................................................................................................24188.00888210050
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................21186.00868600000
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................20186.008663121730
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................21172.00721625111190
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................19170.00700000700
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................18158.00585800000
..............................................................................................................CAGGTACTTAGTGACTCTCAAAA............................................................................................................................23149.00494700020
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22143.004316200250
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGCC..............................................................................23143.00430364300
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................21137.00377411231
.............................................................................................................TCAGGTACTTAGTGACTCTCAATT............................................................................................................................24135.00357300250
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................22133.00332431050
.............................................................................................................TCAGGTACTTAGTGACTCTCAACA............................................................................................................................24131.003111100190
........................................................................A-------------TGTC--CAGCACACGCTG-CAGC....................................................................................................................................................21129.00292000270
.............................................................................................................................................................AGGGTCGCTCTGTGCCTGTGC...............................................................................21123.00231710050
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGT...............................................................................22122.00221141330
.............................................................................................................TCAGGTACTTAGTGACTCTCACCA............................................................................................................................24122.00225000170
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................20120.00201700030
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................18120.00207000130
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG.............................................................................................................................23119.00191500040
.............................................................................................................TCAGGTACTTAGTGACTCTCAATA............................................................................................................................24118.0018900090
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................18118.0018641070
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................23117.00171310030
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................18116.00161400020
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAT............................................................................................................................24114.00143000110
..............................................................................................................CAGGTACTTAGTGACTCTCAAT.............................................................................................................................22113.00131300000
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................21111.0011300080
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................19110.00101000000
..............................................................................................................CAGGTACTTAGTGACTCTCACAA............................................................................................................................23110.00101000000
..............................................................................................................CAGGTACTTAGTGACTCTCACA.............................................................................................................................2219.009900000
.............................................................................................................TCAGGTACTTAGTGACTCTCAATC............................................................................................................................2419.009200061
.............................................................................................................TCAGGTACTTAGTGACTCTCATC.............................................................................................................................2317.007401020
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................2017.007100060
...............................................................................................................AGGTACTTAGTGACTCTCAC..............................................................................................................................2017.007410110
.............................................................................................................TCAGGTACTTAGTGACTCTCCC..............................................................................................................................2217.007321010
.............................................................................................................TCAGGTACTTAGTGACTCTCACCT............................................................................................................................2416.006010050
...........................................................................................................................................................TGAGGGTCGCTCTGTGCCTGTG................................................................................2216.006130020
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGCT..............................................................................2316.006120030
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGA...............................................................................2215.005100031
...................................................................................................................................TCACATATTGCTTTGCAT--ACTTT.....................................................................................................2315.005100040
.............................................................................................................TCAGGTACTTAGTGACTCTCATA.............................................................................................................................2315.005100040
.............................................................................................................TCAGGTACTTAGTGACTCTCAACT............................................................................................................................2415.005000050
...............................................................................................................AGGTACTTAGTGACTCTCAAA.............................................................................................................................2115.005500000
..............................................................................................................................................................GGGTCGCTCTGTGCCTGTGC...............................................................................2014.004200020
.............................................................................................................TCAGGTACTTAGTGACTCAA................................................................................................................................2014.004110020
droVir3
AGTGCCG--T-----------------GT--------------CAGTT--GTGC---------TT--TTCCGTGCTGAACTCCTCCCGCC--CTGCACACCCCG-CTGCTCAGGTACTTAGTGACTCTCAATCATCTATTGCTTTGCAT--ACCTTGAGGGTCGCTCTGTGCCTGTGCCGCCTGTGCTGCACAA-CCAACGA--CGAGATGCATACGTGACCC---------------------TGAC-------CGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................221272895.002728952454118717295917123331229819712351817415258514218469394587761106145335921199510884168051752977124320252372236880520813010578806263162659849141315161031127311431191881115713381403307235628883452410324730998542884197276928073994393977392540282557746778
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................211189946.001899464336651623720644381887648014681992770452041105452212309265674241507138010595827508872725974459527141613439541992914623710542033253999399101291489171025163631151914201016901594946134102895061906919693768624202453207015952622225061532497283660346308
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA.............................................................................................................................23139380.0039380374390226810516451111538183520820161650102920211318691499135759240619564513863112411361164910942794814220110501110100261215101263824477048991745898895571622722824141358958713881644
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................20131429.00314293057201293324207114197951411215945725210926421713720340833152996573310337399687624721116760183994123015596087653680143326242757221129181741720194342324234810243693682981913103679503493849861029
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................22120137.00201379012066924777965231515158201233331549393213723422431631414610662138120321041461216910640133213013444232202231250173415222922252122672660622476637624158640152612911415
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGC...............................................................................22116013.001601323131339315813148181583694631425621101169056120525599161632175412310203710127210112327372625471081096588617377898238899172427222623571363157419252146293141415
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAA............................................................................................................................24113822.001382213424565175112100094311213505304442635103448577461434614361632540324919030000100000000000131005702352274227370218216592142106141536213289554578
.............................................................................................................TCAGGTACTTAGTGACTCTCACA.............................................................................................................................2318584.0085841535923302110013011000210015131316165422252205370509001000020001000200024000302614741540975200184174144142197743278301835898
.............................................................................................................TCAGGTACTTAGTGACTCTCACC.............................................................................................................................2316758.006758557186303212200000001301241187335465230156621200021160664254176125843411624100010423408221493507426398515705160203244414457
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT.............................................................................................................................2314949.00494988906019316010013112427951010850759914615854462053818628310666391101010231101010200142100811095455334201551621027714511732660111276275
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................1914333.004333177654269915141200110415327124142362254404474648464142127651834626625711729622702131100221110111311233206122292181031251309764137115859228966
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTG................................................................................2111776.001776101015658836516408350001056171563315176649437256503174311222428312711200011200111110000001228130145015171369778533716111251012
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................2011667.001667001481200000000012214220130129201113521311071810901000000000000000000001000322004022000135
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC.............................................................................................................................2311649.00164913118314230000000011000431357128191041842362482110002010010100000401001362272371874346262351441004963157166
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................2111442.0014421751760915172012100005142198268433714253444465140511011210010203600000010100002100234100033231141317202330271035811
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................2111261.001261027923001000000024212202504137585525123212303452193210000000000000000000000000212137303210311
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................2211215.001215333276470100021137399026773835685853652672251326337302190000000000010000000150024347076576131361284310152336
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................2011154.0011541159114470000012165667510131044767772116611217465866788684334900000000000000000001500223235202427030112
.............................................................................................................TCAGGTACTTAGTGACTCTCACAA............................................................................................................................2411020.0010200014310000000000000002004151322161111280202743231000000000000000000000000023111611608445287106732338682
.............................................................................................................TCAGGTACTTAGTGACTCTCAATA............................................................................................................................241979.009790081000000000002000000035101071313111413674010120011100000000010000722272261413220237112306776
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................191758.0075810940738010413015927396111520313130372615113636443834139840000000000000001000250022814303222412011
.............................................................................................................TCAGGTACTTAGTGACTCTCAACA............................................................................................................................241731.00731101000000000100000000001010000022031086200022101110000000000000010131164762922205035348592
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGCT..............................................................................231716.007161281030100010000002001001101000100000011000053252201002031160011120321251141017610511311011
.............................................................................................................TCAGGTACTTAGTGACTCTCACCA............................................................................................................................241599.0059911210000000000010000000010001200010223000000000000000000010000001111139532100153531439068
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................211584.0058430523001441010000784554282322561020102126755168000001000010100000009000257553987911145165101433
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGCC..............................................................................231553.005536374043000010000010004110000002030300000000094410423110100122860000000395267466412000100
.............................................................................................................TCAGGTACTTAGTGACTCTCAATT............................................................................................................................241494.0049402740000001000110002020213657324401311310200102011112211103000161273947429914147842340
.............................................................................................................TCAGGTACTTAGTGACT...................................................................................................................................171439.00439000000000000000000000000000000000000000000101000202210034170000121146437700000088695766
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................231427.00427005100000000003013310873422456452395301903042342431000000000000000000000000020000000001110
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAT............................................................................................................................241327.00327015200000000110100010003541159439818148111000000000000000000000005647512195718620741013
............................................................................................................................................................GAGGGTCGCTCTGTGCCT...................................................................................181316.003162920001020000000000000040001000000000010000010100010000000000000000040723944524400000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG.............................................................................................................................231244.0024400131010000001000000000004223002311410200000000000000000000010008633281310512611210672223
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................221211.00211001510000000000310412027014926121710514100141891030000000000000000000000000021000100000000
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................181193.0019312851611120000003101000337517414323141422500000001000000000010101030111715878410011
............................................................................................................................................................GAGGGTCGCTCTGTGCCTG..................................................................................191176.001760330101020000000000000013116010000000120000301123011010000000001011032241920152400000
.............................................................................................................TCAGGTACTTAGTGACTCTCACCT............................................................................................................................241172.00172510000000000000000000000000001110000110010000010000000000100000201117131212877168551322
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................221171.00171311326110000000000000300556931512518873520000000000000000000000010995141001035359
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................191149.00149101190000000000000001002101131121230032200000000000000000000000000000010000010001
...............................................................................................................AGGTACTTAGTGACTCTCAAA.............................................................................................................................211141.001410070100000000011000010036739430993101519661000000000000000000000006320020013000000
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................211138.001381518531010000001030110021181132306005821120000000000000000000100011347130221210022
..............................................................................................................CAGGTACTTAGTGACTCTCAAA.............................................................................................................................221134.0013400780000000000000000000001174700460636410000000000000000000000002011000110000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAACT............................................................................................................................241124.001241120000000000000000000000010300400000100000000000010000000000000098811777912833513
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGG...............................................................................221123.001239171040400000000000000000000000010010116000010000000000000004230000000864041000000
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................191116.00116178502000000000000000010000000100200000012000000000000000000001000000000001120000
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGT...............................................................................221106.001060031233010201010000000295234011521010221000000001000000000062101204242236603021
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................18196.00960150102000001021022035074412123631678180000000000000000000001000010100030000100
...........................................................................................................................................................TGAGGGTCGCTCTGTGCCTGTG................................................................................22188.00881121322090503110101011121148000010243020000000000000000000001000143103111310121
.............................................................................................................TCAGGTACTTAGTGACTCTCAATCATC.........................................................................................................................27187.008710000000000010000000000011010001001000000001000000000000000000010161112524000332227
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................20179.0079004000400000000000000010001001011042523100000000000000000001001022110000000521519
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................21175.007500620000000000000000001000320001100000000000000000000000000000000000121000000001
......................................................................................CGCC--CTGCACACCCCG-CTGC....................................................................................................................................................20167.0067007200000000000000000000000010000000001000000000010100000002000020001653810700001
.............................................................................................................TCAGGTACTTAGTGACTCTCAATC............................................................................................................................24166.00663017001000000000000020000000512100000000000001010000110001100000074324412012232
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAAT...........................................................................................................................25162.006210200000000000000000000004410010102321000000000000000000000000010811320010152222
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGA...............................................................................22160.00601021100010000000000000010210010100021020000000000000000000002102326420102243225
.............................................................................................................TCAGGTACTTAGTGACTCTCATC.............................................................................................................................23157.005770430000000000010000000010001092600000000000000000000000000000000022001041011110
............................................................................................................CTCAGGTACTTAGTGACTCTCAAA.............................................................................................................................24157.0057002000000000000000000010038103202505113101000000000000000000000000000000000000000
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................18155.00550030100000000021000100002332130010111020000000000000000000000003047100000030135
.............................................................................................................TCAGGTACTTAGTGACTCTCATA.............................................................................................................................23154.00541002100000000000000000011100330220200210000000000000000000000000099520101210110
...............................................................................................................AGGTACTTAGTGACTCTCAAAA............................................................................................................................22153.00530010000000000000000000006420120320588330000000000000000000000002020000000010000
.............................................................................................................TCAGGTACTTAGTGACTCTCCC..............................................................................................................................22148.004841103010000000010031421100000011001000011000000000000100000000000002400020020000
...............................................................................................................AGGTACTTAGTGACTCTCAC..............................................................................................................................20146.00460040010000000001000111121202100211230101000000000000000000000001511023310000000
...........................................................................................................................................................TGAGGGTCGCTCTGTGCCT...................................................................................19142.00420300000011000000000000000000000000000012000000000000000000000000001017765700000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAG............................................................................................................................24141.00410021000000000000000000000100000100030110000000000000000000000000097211001002125
...........................................................................................................................................................TGAGGGTCGCTCTGTGCCTGT.................................................................................21139.00390010020030100011000000120014100111011120000000000000000000011000023100001010021
..............................................................................................................CAGGTACTTAGTGACTCTCAAAA............................................................................................................................23139.003900260000000000000000000002001010000031100000000000000000000000000010000002100000
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGT.................................................................................20137.00371010001000100000000102104121300310010010000000000000000000001001121001111001010
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................20136.00360210100000000001000001031210211310064210000000000000000000000000010000000000010
.............................................................................................................TCAGGTACTTAGTGACTCTCACG.............................................................................................................................23135.00353010000000000000000000000000010000100000000000000000000000000000266300101121213
.............................................................................................................................................................AGGGTCGCTCTGTGCCTGTGC...............................................................................21135.003500201000000000000000000000010001000000000000000000000000000012002000221110000000
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................21134.00340010000000000021010000112220220120424120000000000000000000001000000000000000000
..................................................................................................................TACTTAGTGACTCTCAA..............................................................................................................................17131.00310000000000000000000000000000000000000000000000000000000000001002244300000080043
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGCA..............................................................................23130.00300040000010000000000000000000000000000000000000000000000000000010002054714000010
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................18129.002900250000000000000000000100000200100000000000000000000000000000000000000000000000
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGCCC.............................................................................24129.00298000000000000000000000000000000100000000000000000000000000010000000036224200000
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTT................................................................................21128.00280000000000000000010001001000000000000000000000000000000000000000000034724500000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAAC...........................................................................................................................25127.00270020000000000000000000000000000000000000000000000000000000000001054600000040221
.............................................................................................................TCAGGTACTTAGTGACTCTCAATCA...........................................................................................................................25127.00270011000000000000000000000000000000000000000000000000000000000000024212101501132
.....................................................................................CCGCC--CTGCACACCCCG-CTGC....................................................................................................................................................21126.00261001000000000000000000000000010000000000000000000000000000100000100072025500000
.............................................................................................................TCAGGTACTTAGTGACTCAA................................................................................................................................20225.00500000000000000000000001010334212140182300000000000000000000000000503001002020100
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGCTT.............................................................................24125.00251000000000000000000100000000000000000000000000000000000000000000000032338400000
...................................................................................................................................TCATCTATTGCTTTGCAT--ACCTT.....................................................................................................23124.00240031000000000000000000102410000020000000000000000000000000000005400000000000010
.............................................................................................................................................................AGGGTCGCTCTGTGCCTGTGCT..............................................................................22124.00240000000000000000000000000001000000000000000001000111000000000000000021635200000
droGri2
ATCA--G--T-----------------GT--------TA-AAT-------GT------GGAAAAA--CCA---ATCCA---------ATCCGCTGCACACGTTG-CTGCTCAGGTACTTAGTGACTCTCAATTCAACATTGTATTGCAC-GCCTTTGAGGGTCGCTCTGTGCCTGTGTTGCACGTGTTGCATTC-ACACCAT---CCGAGTGATTTGTG-------------------------TCCT-------TTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................2111712.001712169715
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................221530.0053051812
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................201204.002042022
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................201185.001851850
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................22184.0084840
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGT...............................................................................22168.0068608
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................19165.0065650
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................21149.0049490
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTG................................................................................21117.0017161
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................21115.0015141
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................19114.0014140
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA.............................................................................................................................23112.0012120
...................................................................................................................................TTCAACATTGTATTGCAC-GCCTTT.....................................................................................................2419.00990
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................2117.00770
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................2217.00770
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................1917.00770
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................1815.00550
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT.............................................................................................................................2315.00550
.............................................................................................................................................................AGGGTCGCTCTGTGCCTGTGT...............................................................................2115.00550
...................................................................................................................................TTCAACATTGTATTGCAC-GCCTT......................................................................................................2314.00440
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................2013.00330
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC.............................................................................................................................2313.00330
..............................................................................................................CAGGTACTTAGTGACTCTCT...............................................................................................................................2013.00330
.............................................................................................................TCAGGTACTTAGTGACTCTCAATT............................................................................................................................2413.00330
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................2212.00220
............................................................................................................................................................GAGGGTCGCTCTGTGCCTG..................................................................................1912.00220
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................1812.00220
.............................................................................................................TCAGGTACTTAGTGACTCTG................................................................................................................................2011.00110
............................................................................................................................................................GAGGGTCGCTCTGTGCCT...................................................................................1811.00110
..............................................................................................................CAGGTACTTAGTGACTCTCAAT.............................................................................................................................2211.00110
.............................................................................................................TCAGGTACTTAGTGACTT..................................................................................................................................1811.00110
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................2111.00110
..........................................................................................................TGCTCAGGTACTTAGTGACT...................................................................................................................................2011.00110
...................................................................................................................................TTCAACATTGTATTGCAC-GCCT.......................................................................................................2211.00110
.............................................................................................................TCAGGTACTTAGTGACTCTCACA.............................................................................................................................2311.00110
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................2111.00110
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................1811.00110
..............................................................................................................CAGGTACTTAGTGACTCTCAAAAA...........................................................................................................................2411.00110
..........................................................................................................................................................TTGAGGGTCGCTCTGTGCCT...................................................................................2011.00101
............................................................................................................CTCAGGTACTTAGTGACTCT.................................................................................................................................2011.00110
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGTT..............................................................................2311.00110
.............................................................................................................TCAGGTACTTAGTGACTCTCAATTC...........................................................................................................................2511.00110
.............................................................................................................TCAGGTACTTAGTGACTCG.................................................................................................................................1911.00110
.............................................................................................................................................................AGGGTCGCTCTGTGCCTGTG................................................................................2011.00110
.............................................................................................................TCAGGTACTTAGTGACTCTCAAGG............................................................................................................................2411.00110
....................................................................................................................................................C-GCCTTTGAGGGTCGCTCTG........................................................................................2011.00110
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTGTTT.............................................................................2411.00110
.......................................................................................................................................................CCTTTGAGGGTCGCTCTGT.......................................................................................1911.00110
............................................................................................................................................................GAGGGTCGCTCTGTGCCTGTT................................................................................2111.00110
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................1811.00110
.............................................................................................................TCAGGTACTTAGTGACTCTCAAAA............................................................................................................................2411.00110
.............................................................................................................TCAGGTACTTAGTGACTCTCAATGG...........................................................................................................................2511.00110
.............................................................................................................TCAGGTACTTAGTGACTCTCAGCA............................................................................................................................2420.50110
droWil2
ATTCATA--A----GG---TGACGAAA----AAGTGACTAT-ACAAAGTGAT------ACGAAAT--ATCTCTG---C---------------------CTAAA-CAGCTCAGGTACTTAGTGACTCTCAAA--------GAATATATCTAGACTTGAGAGACGCTCTGTACCTAGACTGTTG-TG---------T-------------------------------------------------CTG-------CGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................2128714.5017429239575571662171244
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................2228614.0017228244056741473491751
............................................................................................................................................................GAGAGACGCTCTGTACCTAGAC...............................................................................2222118.504237353511252358180
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2021732.00346419085414825186
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................1921032.502065177317217643
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................232864.00172891737086535
............................................................................................................................................................GAGAGACGCTCTGTACCTAGACT..............................................................................232850.0017001364345475173
............................................................................................................................................................GAGAGACGCTCTGTACCTAGA................................................................................212554.50110999726184325
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................202384.507692760070
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................212259.505191515021
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................232242.004841426322032
............................................................................................................................................................GAGAGACGCTCTGTACCTAG.................................................................................202234.00468430141248
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................242218.004361122102040
.............................................................................................................................................................AGAGACGCTCTGTACCTAGACT..............................................................................222190.503812679212460
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................222101.00202559413814
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................21278.501571299289
..........................................................................................................................................................TTGAGAGACGCTCTGTACCTAG.................................................................................22259.001181151020
.............................................................................................................................................................AGAGACGCTCTGTACCTAGA................................................................................20258.501171042056
............................................................................................................................................................GAGAGACGCTCTGTACCTAGACC..............................................................................23255.501111032006
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................19255.001101091000
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................22249.509922310433
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................20246.00921460387
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................19245.509135002810
............................................................................................................................................................GAGAGACGCTCTGTACCTAGAA...............................................................................22244.5089782333
............................................................................................................................................................GAGAGACGCTCTGTACCTAGG................................................................................21242.5085850000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................22241.5083082010
.............................................................................................................................................................AGAGACGCTCTGTACCTAGAC...............................................................................21236.00725714010
............................................................................................................................................................GAGAGACGCTCTGTACCTAGAAA..............................................................................23235.5071660113
.............................................................................................................................................................AGAGACGCTCTGTACCTAGACA..............................................................................22235.0070524356
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................23226.5053473111
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................21226.0052435031
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................19226.0052250000
............................................................................................................................................................GAGAGACGCTCTGTACCTAGACA..............................................................................23222.50451515618
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................23222.504513210110
...........................................................................................................................................................TGAGAGACGCTCTGTACCTAG.................................................................................21220.0040390001
..........................................................................................................................................................TTGAGAGACGCTCTGTACCT...................................................................................20219.5039380001
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------A....................................................................................................................24219.00380240140
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................23218.0036031041
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................21217.0034243043
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................18214.0028260020
.............................................................................................................................................................AGAGACGCTCTGTACCTAGACTGT............................................................................24213.5027141048
............................................................................................................................................................GAGAGACGCTCTGTACCT...................................................................................18212.0024191022
.............................................................................................................TCAGGTACTTAGTGACTCG.................................................................................................................................19212.0024240000
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................22212.0024024000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................24211.5023017060
...........................................................................................................................................................TGAGAGACGCTCTGTACCTAGA................................................................................22211.0022153121
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................22210.502154093
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................23210.0020020000
.............................................................................................................................................................AGAGACGCTCTGTACCTAG.................................................................................1929.5019152002
..............................................................................................................................................................GAGACGCTCTGTACCTAGACTGT............................................................................2329.5019100027
.............................................................................................................TCAGGTACTTAGTGACTCTCACT--------.....................................................................................................................2329.501976060
.............................................................................................................................................................AGAGACGCTCTGTACCTAGACC..............................................................................2229.0018180000
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................2329.0018020115
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................1829.0018117000
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................2228.5017111050
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................2428.5017010070
............................................................................................................................................................GAGAGACGCTCTGTACCTAGACG..............................................................................2328.0016150010
..............................................................................................................................................................GAGACGCTCTGTACCTAGAC...............................................................................2028.0016151000
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................1827.5015015000
.............................................................................................................TCAGGTACTTAGTGACTCTCATT--------.....................................................................................................................2327.501546032
..............................................................................................................................................................GAGACGCTCTGTACCTAGACT..............................................................................2126.501372211
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2126.001204080
............................................................................................................................................................GAGAGACGCTCTGTACCTAGACTT.............................................................................2426.0012120000
............................................................................................................................................................GAGAGACGCTCTGTACCTAGT................................................................................2125.501191100
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................2125.0010010000
.........................................................................................................CAGCTCAGGTACTTAGTGACT...................................................................................................................................2125.001080011
..............................................................................................................................................................GAGACGCTCTGTACCTAGACTG.............................................................................2225.0010100000
...........................................................................................................GCTCAGGTACTTAGTGACTCT.................................................................................................................................2125.001090010
............................................................................................................................................................GAGAGACGCTCTGTACCTAGACTG.............................................................................2425.0010100000
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................1925.0010010000
.............................................................................................................................................................AGAGACGCTCTGTACCTAGACG..............................................................................2224.50980001
..................................................................................................................................AA--------GAATATATCTAGACTTG....................................................................................................1914.00410030
...........................................................................................................................................................TGAGAGACGCTCTGTACCT...................................................................................1923.50770000
..............................................................................................................CAGGTACTTAGTGACTCTCAT..............................................................................................................................2123.50706010
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................1823.50704030
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------A....................................................................................................................2423.00602040
..............................................................................................................CAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................2223.00606000
............................................................................................................................................................GAGAGACGCTCTGTACCTAGAAC..............................................................................2323.00660000
....................................................................................................................................................CTAGACTTGAGAGACGCTCTGTACCTAG.................................................................................2813.00330000
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................2023.00601032
.........................................................................................................CAGCTCAGGTACTTAGTGACTC..................................................................................................................................2222.50511021
...............................................................................................................................................................AGACGCTCTGTACCTAGACTGT............................................................................2222.50540001
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................1822.50504001
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................2422.50512020
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................2422.50504010
.............................................................................................................................................................AGAGACGCTCTGTACCTAGAAA..............................................................................2222.50540100
.............................................................................................................................................................AGAGACGCTCTGTACCTAGACTT.............................................................................2322.50520021
.............................................................................................................................................................AGAGACGCTCTGTACCTAGG................................................................................2022.50550000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------A....................................................................................................................2422.00404000
..............................................................................................................CAGGTACTTAGTGACTCTCACC--------.....................................................................................................................2222.00422000
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................2122.00430010
.............................................................................................................TCAGGTACTTAGTGACTCTCATC--------.....................................................................................................................2321.50312000
..........................................................................................................................................................TTGAGAGACGCTCTGTACCC...................................................................................2021.50330000
...............................................................................................................AGGTACTTAGTGACTCTCAAT--------.....................................................................................................................2121.50301020
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------T....................................................................................................................2421.50310020
..........................................................................................................AGCTCAGGTACTTAGTGACTCT.................................................................................................................................2221.50320001
...........................................................................................................GCTCAGGTACTTAGTGACTCTC................................................................................................................................2221.50310011
............................................................................................................................................................GAGAGACGCTCTGTACCTAGACTA.............................................................................2421.50311100
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------G....................................................................................................................2421.50303000
dp5
TTCG-AG--T-----------------GT--------TTAT-CG---A--GT------GATTTAT--CTACAAGCACA---------------------CTTTGCCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATCTTGAGAGTCTCTCTGTGCCTGCACTGGCGGTGGTGCAACT-GCAACGA-TTAAGGGTGTTC----------------------------------------CTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................21194649.009464973713373228517315643184829740373489
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................22178816.0078816375451034487152140573621261515963120
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2319293.009293164573711417616521137763
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................2016809.00680906764514002267
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2016035.00603534437741711015119619270329132
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................2115251.00525105192205004066
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................2412643.002643118748702500637181
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAC...............................................................................2212583.0025830156084614012303415
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................2211582.00158241144104293163241137
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................1911381.00138135110418617420716919
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCA................................................................................2111059.00105909973253001525
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................251908.009080672130300202171
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................231682.0068203583669422311620
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................221650.006500637100001020
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................221487.004871287825103105615
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGC.................................................................................201431.0043103742484001173
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................191394.00394038920100200
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................191382.00382132620223010810
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................201340.0034002730021413524
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................231202.00202019800000202
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCAC...............................................................................211187.001870173122000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------.....................................................................................................................231185.0018501261816003310
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................231184.0018401034354102422
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................241171.001710791123106636
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAA...............................................................................221157.0015701331220001000
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................211127.00127012220100200
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................211127.001271065536522290
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................231121.00121584116400920
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................181104.00104010400000000
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCA................................................................................201104.00104010220000000
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22184.008406821310351
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................24183.0083037700003441
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................24176.007607600000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................22167.006705410501600
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................23167.006705910100501
............................................................................................................................................................GAGAGTCTCTCTGTGCCTG..................................................................................19165.006506210000110
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................23163.006305131020510
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................21159.005914021701250
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................18158.005805800000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------A....................................................................................................................24153.0053010200004001
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------A....................................................................................................................24153.005304500000800
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................24153.0053032600001500
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................21153.005304200000911
...................................................................CTACAAGCACA---------------------CTTTGCCGGC....................................................................................................................................................21150.0050032601000110
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................22150.005004400000600
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................18143.0043112730001514
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................21142.0042012431620050
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................19137.003703700000000
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGC.................................................................................19134.003403310000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------CTC..................................................................................................................26128.002800000002800
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................24127.0027011000001501
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................20123.00230600010880
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................18122.002201400230120
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------GC...................................................................................................................25121.002101001100540
..............................................................................................................CAGGTACTTAGTGACTCTCACA--------.....................................................................................................................22121.002101910000100
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................20120.002001102000070
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------TT...................................................................................................................25120.00200720000911
.............................................................................................................TCAGGTACTTAGTGACTCTCATA--------.....................................................................................................................23120.002009000001010
..............................................................................................................CAGGTACTTAGTGACTCTCAT..............................................................................................................................21120.002002000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------A....................................................................................................................24120.002001440000200
..............................................................................................................CAGGTACTTAGTGACTCTCACC--------.....................................................................................................................22119.001901800000100
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------G....................................................................................................................24117.001705100001100
...........................................................................................................................................................TGAGAGTCTCTCTGTGCCTGCA................................................................................22116.001601200000400
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAAA..............................................................................23114.001401300000100
.............................................................................................................TCAGGTACTTAGTGACTCTCTT..............................................................................................................................22114.00140900000050
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCACA..............................................................................22114.001401300000001
....................................................................TACAAGCACA---------------------CTTTGCCGGC....................................................................................................................................................20113.001311010000001
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................18113.001301100100100
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------T....................................................................................................................24113.001303000001000
.............................................................................................................TCAGGTACTTAGTGA.....................................................................................................................................15112.00120000000624
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCACC..............................................................................23112.00120731100000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------AA...................................................................................................................25112.00120310000800
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------AAA..................................................................................................................26112.001201000001100
..............................................................................................................CAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................22112.001201110000000
...........................................................................................................................................................TGAGAGTCTCTCTGTGCCTGC.................................................................................21111.001101100000000
.............................................................................................................TCAGGTACTTAGTGACT...................................................................................................................................17111.00110000000641
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCAA...............................................................................21111.001101100000000
.............................................................................................................TCAGGTACTTAGTGACTCTCATG--------.....................................................................................................................23110.00100000000820
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------T....................................................................................................................24110.00100230000131
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------GCT..................................................................................................................26110.00100510000310
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------TAC..................................................................................................................26110.00100000000640
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................1919.0092250000000
................................................................T--CTACAAGCACA---------------------CTTTGCCGGC....................................................................................................................................................2219.0090620100000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAAAA.............................................................................2419.0090900000000
.............................................................................................................TCAGGTACTTAGTGACTCTCCT..............................................................................................................................2219.0095100100020
..............................................................................................................CAGGTACTTAGTGACTCTCACC--------A....................................................................................................................2319.0090900000000
................................................................................................................GGTACTTAGTGACTCTCAAA--------.....................................................................................................................2019.0090810000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------TT...................................................................................................................2518.0080200000600
..................................................................................................................TACTTAGTGACTCTCAA..............................................................................................................................1718.0080000000503
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AT...................................................................................................................2518.0080600000200
.............................................................................................................TCAGGTACTTAGTGACTCTCCC..............................................................................................................................2218.0080104000210
.............................................................................................................TCAGGTACTTAGTGACTCA.................................................................................................................................1918.0080000100403
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................2117.0070501000010
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCT................................................................................2117.0070601000000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGT.................................................................................2017.0070700000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................2217.0070700000000
.............................................................................................................TCAGGTACTTAGTGACTCAA................................................................................................................................2017.0070000000511
...................................................................................................................ACTTAGTGACTCTCAA..............................................................................................................................1617.0070000000304
..............................................................................................................CAGGTACTTAGTGACTCTCT...............................................................................................................................2017.0070700000000
...............................................................................................................AGGTACTTAGTGACTCTCAC..............................................................................................................................2017.0070600000100
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAT...............................................................................2217.0070510000010
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCC................................................................................2117.0070610000000
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCACC..............................................................................2216.0060501000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------TA...................................................................................................................2516.0060000000204
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCACA..............................................................................2316.0060510000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------A....................................................................................................................2416.0060500000100
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------A....................................................................................................................2216.0060600000000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTT..................................................................................1916.0060600000000
...................................................................................................................ACTTAGTGACTCTCA...............................................................................................................................1516.0060000000303
.............................................................................................................TCAGGTACTTAGTGACTCTCAGA--------A....................................................................................................................2416.0060200000400
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------CA...................................................................................................................2516.0060000000501
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------GA...................................................................................................................2515.0050000000500
.....................................................................ACAAGCACA---------------------CTTTGCCGGC....................................................................................................................................................1915.0050500000000
.............................................................................................................TCAGGTACTTAGTGACTCTCATA--------A....................................................................................................................2415.0050400100000
............................................................................................................CTCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2415.0050500000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------C....................................................................................................................2415.0050001000400
...........................................................................................................................................................TGAGAGTCTCTCTGTGCCT...................................................................................1915.0050500000000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................2315.0050400000100
droPer2
TTCG-AG--T-----------------GT--------TTAT-CG---A--GT------GATTTAT--CTACAAGCACA---------------------CTTTGCCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATCTTGAGAGTCTCTCTGTGCCTGCACTGGCGGTGGTGCAACT-GCAACGA-TTAAGGGTGTTCCTAATAAGTGTTATATTTAGAGTGTTAT-ATCG-------AASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................22149916.00499167364742991342834466
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................21145389.00453891114418841607389284111
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................2114627.004627046270000
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................2014043.004043040374110
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2313874.0038741203655811170
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2013161.00316189017927920613856
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................241764.007646567821000
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................191759.00759502201926183
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................221610.0061042537101551
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................221348.0034803480000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................251259.00259262285000
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................221245.0024562344010
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................231232.0023262187100
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................201226.0022602171530
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................191205.002050176171020
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................191166.0016611650000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAC...............................................................................221161.0016181389060
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................221152.0015211501000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCA................................................................................211111.0011101071210
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------.....................................................................................................................23185.008532476000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................23176.00760760000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................23170.007015514000
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................21168.00680680000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................23166.00665582100
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................21144.00441985525
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................23140.00400400000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGC.................................................................................20133.00330320001
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................21131.003117122000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................23130.00301290000
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................21127.00277510311
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................19126.00262510000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAA...............................................................................22125.00250250000
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................18123.00230230000
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................19123.00230230000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................24122.00220220000
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCAC...............................................................................21122.00220220000
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................22121.00210210000
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22121.00210192000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................24121.00210201000
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................18120.00201450100
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................18119.00191180000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................21119.00190190000
..............................................................................................................CAGGTACTTAGTGACTCTCAT..............................................................................................................................21117.00170170000
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................18115.00150100320
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................24113.00133100000
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................18112.00120120000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------A....................................................................................................................24111.0011290000
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCA................................................................................20110.00100100000
..............................................................................................................CAGGTACTTAGTGACTCTCAG..............................................................................................................................21110.00100100000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------A....................................................................................................................24110.00100100000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................24110.0010280000
.............................................................................................................TCAGGTACTTAGTGACTCTCAGA--------.....................................................................................................................2319.009090000
..............................................................................................................CAGGTACTTAGTGACTCTCACA--------.....................................................................................................................2218.008080000
..............................................................................................................CAGGTACTTAGTGACTCTCACC--------.....................................................................................................................2218.008710000
..............................................................................................................CAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................2218.008080000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------GCT..................................................................................................................2616.006510000
.............................................................................................................TCAGGTACTTAGTGACTCTCATA--------.....................................................................................................................2316.006051000
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................2016.006040110
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGC.................................................................................1916.006060000
..............................................................................................................CAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................2216.006060000
............................................................................................................................................................GAGAGTCTCTCTGTGCCTG..................................................................................1915.005030002
................................................................................................................GGTACTTAGTGACTCTCAAA--------.....................................................................................................................2015.005050000
.............................................................................................................TCAGGTACTTAGTGACTCG.................................................................................................................................1915.005500000
.............................................................................................................TCAGGTACTTAGTGACTCA.................................................................................................................................1914.004040000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------A....................................................................................................................2414.004040000
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................2114.004021010
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAAA..............................................................................2314.004040000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------GC...................................................................................................................2514.004130000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................2414.004220000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------TA...................................................................................................................2513.003030000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------G....................................................................................................................2413.003030000
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................2013.003021000
.............................................................................................................................................................AGAGTCTCTCTGTGCCTGCAA...............................................................................2113.003030000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AT...................................................................................................................2513.003030000
...................................................................CTACAAGCACA---------------------CTTTGCCGGC....................................................................................................................................................2113.003110100
............................................................................................................................................................GAGAGTCTCTCTGTGCCTGCAAAA.............................................................................2413.003030000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------A....................................................................................................................2213.003030000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................2312.002020000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------C....................................................................................................................2412.002020000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------T....................................................................................................................2412.002020000
droAna3
ATTC-CGATT-----------------------------GGAT-------GT------GAAAGTG--CCAGAAGTCCA---------------------CTTGG-TAGCTCAGGTACTTAGTGACTCTCAAT--------GCATTTGAC--ATTTTGGGAGCCACTTTGTGCCTGGGCCATCAGTGC----------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................21115411.001541194572974218513150614
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................22110973.001097377351114124817523678
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGC...............................................................................2213408.0034082552465595522705
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2013234.003234556212522715113162
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2311146.001146606239140172142
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................201922.0092291543000
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................211740.0074073910000
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................221522.00522169272552222
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................191352.00352167741855137
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGG................................................................................211347.00347170439511460
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGCT..............................................................................231246.0024670221234
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................241218.0021810356391118
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................231164.001642312513012
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................221105.0010571159604
............................................................................................................................................................GGGAGCCACTTTGTGCCTGG.................................................................................20196.0096502014318
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................23191.0091374311000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................23178.007848224004
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................19177.007759213300
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................21172.007240106709
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------.....................................................................................................................23165.0065154010000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGCA..............................................................................23164.00643003256
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................22160.00606000000
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................20160.006047010300
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGT...............................................................................22151.005110700925
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................21150.00502637113
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................19149.00494900000
.............................................................................................................................................................GGAGCCACTTTGTGCCTGGGC...............................................................................21146.004621120022
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................25140.0040181011001
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGA...............................................................................22139.00392311230
..........................................................................................................................................................TTGGGAGCCACTTTGTGCCTGG.................................................................................22139.00398218002
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................23134.00342351005
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................22133.00333001002
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------A....................................................................................................................24128.00283241000
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................19128.00280280000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGCC..............................................................................23123.00232125013
.............................................................................................................................................................GGAGCCACTTTGTGCCTGGG................................................................................20122.00222200000
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................21121.0021435414
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22117.0017845000
.............................................................................................................................................................GGAGCCACTTTGTGCCTGGGCC..............................................................................22114.0014530105
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGT................................................................................21114.0014520115
..........................................................................................................................................................TTGGGAGCCACTTTGTGCCTGGG................................................................................23113.0013332005
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................24113.00132101000
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................18113.00131300000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGTT..............................................................................23112.0012300108
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................18112.0012451200
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGCTT.............................................................................24111.0011110009
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................21111.00111010000
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................22110.00101000000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGG...............................................................................22110.0010003403
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................24110.0010630010
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................24110.0010901000
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................18110.00101000000
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................18110.0010613000
............................................................................................................................................................GGGAGCCACTTTGTGCCTG..................................................................................1919.009700200
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................2318.008800000
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................2318.008512000
...................................................................CCAGAAGTCCA---------------------CTTGG-TAGC....................................................................................................................................................2018.008022103
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................2018.008510002
.............................................................................................................TCAGGTACTTAGTGACTCTCATA--------.....................................................................................................................2318.008321002
.............................................................................................................................................................GGAGCCACTTTGTGCCTGG.................................................................................1918.008620000
.............................................................................................................................................................GGAGCCACTTTGTGCCTGGGCT..............................................................................2218.008020006
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................2017.007240100
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................2117.007240100
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................2417.007601000
..............................................................................................................CAGGTACTTAGTGACTCTCAT..............................................................................................................................2117.007700000
.............................................................................................................................................................GGAGCCACTTTGTGCCTGGGCA..............................................................................2217.007002005
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------A....................................................................................................................2416.006420000
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................1815.005500000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGC................................................................................2115.005020003
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................1915.005500000
..............................................................................................................CAGGTACTTAGTGACTCTCT...............................................................................................................................2015.005500000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGTTT.............................................................................2415.005200012
....................................................................CAGAAGTCCA---------------------CTTGG-TAGC....................................................................................................................................................1915.005040001
..............................................................................................................CAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................2214.004400000
..............................................................................................................CAGGTACTTAGTGACTCTCACA--------.....................................................................................................................2214.004310000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGTA..............................................................................2314.004010102
...........................................................................................................................................................TGGGAGCCACTTTGTGCCTGGGC...............................................................................2314.004200002
..............................................................................................................CAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................2214.004400000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------A....................................................................................................................2414.004211000
..........................................................................................................................................................TTGGGAGCCACTTTGTGCCTG..................................................................................2114.004130000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------G....................................................................................................................2414.004400000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................2413.003300000
...............................................................................................................AGGTACTTAGTGACTCTCAC..............................................................................................................................2013.003201000
............................................................................................................................................................GGGAGCCACTTTGTGCCTGGGAA..............................................................................2313.003030000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................2313.003300000
..............................................................................................................................................................GAGCCACTTTGTGCCTGGGC...............................................................................2013.003100002
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2113.003201000
droBip1
ATGG-AA--A-----------------AATATTG---TGA---A---------------AGTTGACCCGAAAAGTCCA---------------------CTTAA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GTATTTGAC--ATTTTGAGAGCCACTTTGTGCCTGGGCCATCAGTGTGGCTATA-TCTTCTA--T---AT----A-----------------------------ATCA-------TGSizeHit CountTotal NormTotal
No Reads
droKik1
AGT----------------------------------------------------------------------GCCCA--------------CTTG---A-TGA-TGGCTCAGGTACTTAGTGACTCTCAAA--------TGCCTTGAAAAGTTTTGAGAGTCTCTCTGTGCCTAGGCTGTAGGTGAGGCAAAC-TCAACTA--C---AT----AC----------------------------ATCAAT-----TASizeHit CountTotal NormTotal
No Reads
droFic1
AAAG-TG--A---------ATATGGAT----CAGTGGCTATAGC---A--GT------GCATATT--TTCTGTGCTTG---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GGATTTCAC--ATTTTGGGAGTCGCTCTGTGCCTGTGCTGCAAGTAAGACATTCTCCTACAA-AAAAAAGTGTTAAAAATAAG---------------------TTGA-TTACAACASizeHit CountTotal NormTotal
No Reads
droEle1
ATCAGTA--T-----------------AT--------TTATAAG---C--GTGC-----ATTTGA--TTTTAAGCCCA---------------------CTTGA-TTGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGAGTCGCTCTGTGCCTGTGCTGCCAGTGAAGCAATG-TCTACAG--GTAAAGTGATAAATATAGT---------------------TTCA-------TCSizeHit CountTotal NormTotal
No Reads
droRho1
GTGT--A-------------------------------TATCTCAGTA--GTGC-----ATATAT--TTTTGAGCCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATTTTGGGAGTCGCTCTGTGCCTGTGCTGCCAGTGAAGCATTC-TCCCCAT--TAAAAGTGTTAACTATAA-----------------------TTG-------CASizeHit CountTotal NormTotal
No Reads
droBia1
CTTA-TACATGCAAAGTGCTTGTGGAT----AAGTGTTT-TATCAGTG----GA-----AAATGA--ATTCAAGCTTA---------------------CTAGG-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ACTTTGGGACTCGCTCTGTACCTGCGCTGCCGGTGAGGCCCTC-TCTACAA--AGAAAT-ACAAA----------------------------ATAG-------TASizeHit CountTotal NormTotal
No Reads
droTak1
ATTA-TA---------------------------------TATC---A--GTGC----ATATCTC--TTTTAAGCCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGAC--ATTTTGGGAGTCGCTCTGTGCCTGCGCCGCCAGTAAGGCATTC-TCCACAGAAATAAAGTGTTAAAT---------------------------AAA-------TASizeHit CountTotal NormTotal
No Reads
droEug1
ATAT--GTATATAAAGTACAAATGGAT----CAAT---------------GTGCAAGTGACTATT--TTTCAAGTCCA---------------------CTTAA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GATTTTGAC--AATTTGGGAGTCGCTCTGTGCCTGTGCTGCTAGTGAGGCAATCTTCTACAA--ATAAAGTGAAT--TTA-----------------------CATAT-------CASizeHit CountTotal NormTotal
No Reads
dm3
TTGT--G--T-----------------GT--------TTAAATC---A--GT------GAATAGT--TTAAAAGTCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAA-TCTACAA--ATAAAGTGATAA----------------------------TCAG-------TGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................211766317.0076631700104812501436525227922645101600296348410456020627131781202469238110145517391811258216911756432134623241002404169873013282089417521381480569432530342517000000000000000004646346744385693216411112724949591263112292022101591105831399866147737823120254551108825592793205039027422109412509642068011467710703302773461826217922112021717479168135210413371471171814919013912520823843323401226571458019812661313716242143169243262281657344949786060994203214063165272603733464902738351912022666129264819932812948634520132421192025392344212356981084494023114287287663103519161410338900743670612516271127141425302474513614320180342679239521230845523317341118320400357436316123842243433721401917707133426141274155648952120608391251474410648209266920371690399531220514942391527381947880261115861141476901846131301246952327941751297242714711610719940911421165328418945850397117457850466331043323273817511787366433713473309263672849224424361197672114521860938938912418512909135413300
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................221710671.0071067110006625775713633320400000557127196234607342333411719170267258381061194447612111453333536269424919665072750117873855298221644880076565500000000000000000170281708714043111612089834152380937130223534491193131214602015549153279272742380914717031661644522236540122310813446178608632168377973974766122110240281331422717111822443627112310561711457730602902220277110271490211616422182253422549202311436512793291536080244843554190744181936163252330600592032112159283136495869524519165335925785371182142424904045052065632821321510692802849850943912368998161152764738046930225235787671800628171100334360114394619993780952203043489896284755520127516405546411755196233222934221222732943842114139043856228418248864580279463131171343846264733889290612373031031342139926227134736369414622364946442901402595526944362928388591066671620122428516140012013301374747273953271446903436658158646368316692111032621735117222
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............................................................................................................................................................GGGGGTCACTCTGTGCCTG..................................................................................191144.00144000000000000001000000000000100000010000200000010000000000000000000000000000033140000000600100101010206056143701010030000000000000000020000001000000000000000000000000002100201004002801000100000000000000000000000000000000000010010000000000000000000100000000000000001000000000000000000000001000100000000020000000000000000000000000000
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................191138.0013800000000000000000000000000000000000001000000000010100000000000000000000000001516121000000010000000000000000141010000000000001010000100001000000000000000000000000010000000170100120201040000105000000000000000000000000100010102110301000000000000000000000000000010002000111000131115000000100010000000000000021000000000000000000000001000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGCT..............................................................................231137.001370000000000000100000000000001000000000000000000000000000051000000000000000000120000100145002003020001010925221002000010000000100000001100000000000000010000000000000000200001220001211000005000000000000000000000000000000021437531000001000000010101010101000000000100000100010001010010000000000000101010000000001000000000000000000000
................................................................T--TTAAAAGTCCA---------------------CTCGA-TGGC....................................................................................................................................................211129.001290000000000000000000000000000000000011001000100001120000000000000000000000000000000000000000000000000000000000000000000000000000000000011000200000000001100000000000000000000000000000000000000000000000000000000000001000222913196724000000000000010000001000000100101001000100000000000000000000000000100000020000010000000000000000001000
.............................................................................................................TCAGGTACTTAGTGACTCA.................................................................................................................................191121.0012100000000000000000000000000000000000101010100000000000000000000000000000000006834020000000000000100000000000000000000000000000000000000100000100001100000000000000000023030001702222001000000022000000010000040001000120020001102022000000000000000000000000000100000000110000041002000000000000000000200000001000000000100000000000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------A....................................................................................................................241116.001160000000000000000000000000000000000000000000000001000000000000000000000000000511100000000000000000000000001000000000000000100030000000000000011100011011000000000000000002000000000000000010001000100000000000000000000000114541110812100010000000100000000000000000000002000001030212060000000000000000200000001000100000000000000001000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACG--------.....................................................................................................................231112.001120000000000000000000000000000000000000001000001000010100000000000000000000000554500000000000000000000000000000000000030000101000100011001100100001000100000000000000000000000000000000000000000000000000000000000000000100421488531001000000011100001000000000011000010200002406021100000000000000002000000001000000000000000000000000100
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------T....................................................................................................................241109.001090000000000000000000000000000000000200000001000000310000000000000000000000000210200000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000100000000000001200133681211117000000000001010001000000010000000001000000020200010000000000000001101000000001100000000000000000122000
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................221107.001070000000000000000000000000000000000000000001000000000000000000000000000000000153216270000002000000000000000001500000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000001200000000000000000000000000000000000000000000000011000000000000000000000000010000000000000000000000000000
droSim2
TTTAGTG--T-----------------GT--------TTAAATC---A--GT------GAATAGT--TTAAAAGTCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAA-TCTACAA--ATAAAGTGATAAGTACCAG---------------------TGAA-TT----ACSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................221702880.00702880384243331751854500147767144040204615173123606812351116217
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................211329182.00329182493358951311393000615866195610547270084287525062990001
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................231150060.0015006012511317742150003182528191506313430265613933004
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................24145517.00455171322312836500817170921771211778941533001
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................22144759.004475910172159174780011428111571122081001359002000
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................20138898.00388984459490530670700307935531054995161078142513001
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................25116623.0016623295378700281624166908427149401000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................23110379.0010379328610651994260014811263720499212201001
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................1919389.009389461242219088200272269906752152904001
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................2313809.003809403893133007135661158103527600000
.............................................................................................................TCAGGTACTTAGTGACT...................................................................................................................................1713583.0035830000004546971623232000100
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------.....................................................................................................................2313096.00309615547348480071369169138671000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................2212564.002564632248770040643671477520300000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................2312347.00234743108038005665206104648710000
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................2111942.001942102175900192954687300000
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................2011318.001318304122300111139233100000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------A....................................................................................................................2411307.0013070059002252024853719100000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGC...............................................................................221798.007982023320028631413497773010
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................231783.007831801132002041981751403200000
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................191675.006754833115900001001000000
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................181623.0062373224120022257354307101002
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................201594.0059420286007574155117701300000
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................211557.005572735550800342746504901000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTG................................................................................211480.00480200320019818062451014000
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................211458.0045895221413900505231213400000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------A....................................................................................................................241445.0044502320083621671223001000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................241433.004331023500110561241145003001
...................................................................................................................ACTTAGTGACTCTCAA..............................................................................................................................161402.004020000001095793233000000
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................191284.00284403470022436244421700000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................241275.002753262004448109601000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------A....................................................................................................................241272.002723214600636164571100000
..................................................................................................................TACTTAGTGACTCTCAA..............................................................................................................................171265.0026500000038371083943000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................241241.002412013400554972451000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................221233.0023300017300121917111000000
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................211192.0019252691001211443731700000
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................221178.00178123178001113454225200000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------AA...................................................................................................................251175.00175001200263170440001000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................241167.00167057600204435491000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------AAA..................................................................................................................261159.00159001000222462481010000
.............................................................................................................TCAGGTACTTAGTGACTCTCATA--------.....................................................................................................................231147.00147213000382952220000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------T....................................................................................................................241124.00124195614000135881000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------AA...................................................................................................................251119.00119000000201448361000000
.............................................................................................................TCAGGTACTTAGTGACTCG.................................................................................................................................191113.001136194300000000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------T....................................................................................................................241106.001061101700029212170000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------A....................................................................................................................241104.00104306200231834180000000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................211103.001030006001020362110000000
.............................................................................................................TCAGGTACTTAGTGA.....................................................................................................................................15292.0018400000021311418100000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACG--------.....................................................................................................................23189.00891061700010191870200000
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................18177.00770000005261054000000
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................19173.0073104600000422000000
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................21170.00700004800071041000000
.............................................................................................................TCAGGTACTTAGTGACTCTCATA--------A....................................................................................................................24168.006800010091228180000000
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................20165.00651032002930171000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................23159.0059001390013950100000
..................................................................................................................TACTTAGTGACTCTCA...............................................................................................................................16158.00580000006628513000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGA...............................................................................22156.00560010003015315001000
....................................................................................................................CTTAGTGACTCTCAA..............................................................................................................................15156.0056000000463835000000
...................................................................................................................ACTTAGTGACTCTCA...............................................................................................................................15152.00520000002171725000000
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................23146.00462012000251042000000
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................19145.00450009000311814000000
............................................................................................................................................................GGGGGTCACTCTGTGCCT...................................................................................18145.00451623300000003000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AT...................................................................................................................25144.00441000008517130000000
.............................................................................................................TCAGGTACTTAGTGAC....................................................................................................................................16141.0041000000248615001014
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------TT...................................................................................................................25141.00410010007710160000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------TA...................................................................................................................25141.00410100001271650000000
...............................................................................................................AGGTACTTAGTGACTCTCAC..............................................................................................................................20135.00351003001041250000000
...................................................................................................................ACTTAGTGACTCTCAAA--------.....................................................................................................................17234.506900000053131434000000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------A....................................................................................................................22134.0034000100569121000000
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................18133.003360220023548100000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------GCC..................................................................................................................26132.0032111800042330000000
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22129.0029101100051442100000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------GCCT.................................................................................................................27127.0027511500004200000000
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................20127.0027131130021321000000
..................................................................................................................TACTTAGTGACTCTCAAA--------.....................................................................................................................18226.5053100000892834000000
.............................................................................................................TCAGGTACTTAGTGACTCTCGC..............................................................................................................................22125.0025000000108330100000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------TAA..................................................................................................................26123.0023000000137120000000
.................................................................................................................GTACTTAGTGACTCTCA...............................................................................................................................17123.0023000000004217000000
...............................................................................................................AGGTACTTAGTGACT...................................................................................................................................15122.0022000000000022000000
.............................................................................................................TCAGGTACTTAGTGACTCAA................................................................................................................................20122.002210000028542000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGG...............................................................................22122.0022000000000002200000
droSec2
TTTAGTG--T-----------------GT--------TTAAATC---A--GT------GAACAGT--TTAAAATTCCA---------------------CTCGA-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAA-TCTACAA--ATAAAGGGATAAGT---------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................22134533.00345333133312418161260
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................21124680.0024680220369815431003
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................2112835.0028352832012
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2312680.002680223615183246
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................2011965.0019651963011
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2011531.00153185328366284
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................2211430.0014301289104982
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGC...............................................................................221315.0031521554253
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................241312.0031225512432
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................231250.002502244184
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................231237.0023715862053
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................191218.0021813604636
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................221205.00205205000
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................221198.0019817301213
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTG................................................................................211197.001971821311
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................231144.00144134073
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................201144.001441181187
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................211123.00123123000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------.....................................................................................................................231119.00119111062
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................19192.009275098
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................21186.008686000
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................19179.007978010
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................23170.007059083
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................25156.005643085
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------A....................................................................................................................24134.003433001
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................23127.002727000
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................23124.002423010
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................18124.002424000
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................21123.002312218
..............................................................................................................CAGGTACTTAGTGACTCTCAT..............................................................................................................................21121.002121000
.............................................................................................................................................................GGGGTCACTCTGTGCCTGTG................................................................................20120.002020000
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................22119.001918001
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22116.001615010
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................19115.001515000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................24115.001514010
..............................................................................................................CAGGTACTTAGTGACTCTCACC--------.....................................................................................................................22114.001414000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGCA..............................................................................23113.001312010
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................24113.001310210
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................22112.001212000
..............................................................................................................CAGGTACTTAGTGACTCTCACA--------.....................................................................................................................22112.001212000
.............................................................................................................................................................GGGGTCACTCTGTGCCTGTGC...............................................................................21112.001211001
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................18111.00115033
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................21111.00118012
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................18110.001010000
...............................................................................................................AGGTACTTAGTGACTCTCAC..............................................................................................................................2019.0099000
..............................................................................................................CAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................2219.0099000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------A....................................................................................................................2419.0097020
.............................................................................................................TCAGGTACTTAGTGACTCTCACG--------.....................................................................................................................2319.0097011
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................2418.0088000
..............................................................................................................CAGGTACTTAGTGACTCTCAG..............................................................................................................................2118.0088000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGT...............................................................................2217.0077000
.............................................................................................................TCAGGTACTTAGTGACTCTCATA--------.....................................................................................................................2317.0077000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------A....................................................................................................................2417.0076001
..............................................................................................................CAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................2216.0066000
..............................................................................................................CAGGTACTTAGTGACTCTCT...............................................................................................................................2016.0066000
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................2015.0053011
.............................................................................................................TCAGGTACTTAGTGACTCAA................................................................................................................................2015.0052030
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................1815.0055000
..............................................................................................................CAGGTACTTAGTGACTCTCACA--------A....................................................................................................................2315.0055000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTT................................................................................2115.0055000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................2415.0055000
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................1815.0053011
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------T....................................................................................................................2414.0042011
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------A....................................................................................................................2414.0043010
.............................................................................................................TCAGGTACTTAGTGACTCTCGC..............................................................................................................................2214.0044000
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................2114.0043001
............................................................................................................CTCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2413.0033000
..............................................................................................................................................................GGGTCACTCTGTGCCTGTGC...............................................................................2013.0033000
.......................................................................................................................................................ATTTTGGGGGTCACTCTGTGCCTGTGC...............................................................................2713.0031020
.............................................................................................................TCAGGTACTTAGTGACTCA.................................................................................................................................1913.0032010
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................2113.0031002
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................2412.0022000
droYak3
TAGT--GCAC----GATTCGATTAAAT----CTGTGTATAAATC---A--GT------GAAAAGT--TTTAAAGTCCA---------------------CTCGG-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTAGGACATAA-TCCACA--------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................21116357.00163577408256506419301221913210021
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................2219791.00979165358611922963127235260040
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2013549.0035496824092152789013430010
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGC...............................................................................2211364.001364418710661050200000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2311292.001292192633311102133180020
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................201857.008570856100000000
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................191742.00742507119605193100010
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................221676.00676722223363121200001
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................211614.006140612101000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................231220.0022071079760210000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................231184.0018466169930000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................241156.0015617804781200010
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................231144.0014453210430000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTG................................................................................211139.0013908243112010000
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................221119.0011910683421220000
.............................................................................................................TCAGGTACTTAGTGACTCC.................................................................................................................................19192.00927202000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................21189.008956171231000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................22167.0067067000000000
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................20161.00610431130400000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------.....................................................................................................................23152.00529122730100000
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................21150.00502308130600000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................25150.00507311010100000
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................19148.00480280191000000
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................19136.0036034200000000
.............................................................................................................................................................GGGGTCACTCTGTGCCTGTGC...............................................................................21136.00362231100000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................23135.00352221100000000
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................18127.0027115900200000
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................21123.0023022100000000
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................21122.0022152230000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................24121.0021141420000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGG...............................................................................22119.0019100180000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................22119.0019412110100000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGCT..............................................................................23117.0017211130000000
.............................................................................................................TCAGGTACTTAGTGACTCG.................................................................................................................................19113.0013130000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................24113.001313810000000
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22112.001208210010000
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................21110.001031301200000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGCC..............................................................................2319.00900720000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------T....................................................................................................................2419.00912600000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................2419.00902600100000
..............................................................................................................CAGGTACTTAGTGACTCTCAT..............................................................................................................................2118.00808000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------A....................................................................................................................2418.00811600000000
...................................................................TTTAAAGTCCA---------------------CTCGG-TGGC....................................................................................................................................................2018.00800710000000
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................2018.00810500200000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2117.00715010000000
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................1817.00715100000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................2417.00721400000000
...........................................................................................................................ACTCTCAAT--------GCTTTTGAC--ATTTTGGGGGT...............................................................................................2917.00700000000007
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGT...............................................................................2217.00704120000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................2217.00707000000000
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................1817.00716000000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................2216.00606000000000
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................1816.00614010000000
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................1916.00606000000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................2315.00505000000000
............................................................................................................................................................GGGGGTCACTCTGTGCCT...................................................................................1815.00532000000000
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................2315.00503020000000
.............................................................................................................................................................GGGGTCACTCTGTGCCTGTG................................................................................2015.00505000000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................2415.00505000000000
.............................................................................................................TCAGGTACTTAGTGAC....................................................................................................................................1615.00500000000050
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------A....................................................................................................................2414.00403100000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------A....................................................................................................................2414.00404000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------T....................................................................................................................2414.00402200000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGA...............................................................................2214.00401300000000
.............................................................................................................TCAGGTACTTAGTGACTCTCTT..............................................................................................................................2214.00413000000000
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................2014.00402100100000
.................................................................................................................GTACTTAGTGACTCTCAA..............................................................................................................................1813.00303000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------T....................................................................................................................2413.00301200000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGCA..............................................................................2313.00303000000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTG..................................................................................1913.00300300000000
....................................................................TTAAAGTCCA---------------------CTCGG-TGGC....................................................................................................................................................1913.00300300000000
...............................................................GT--TTTAAAGTCCA---------------------CTCGG-TGGC....................................................................................................................................................2213.00300210000000
.............................................................................................................TCAGGTACTTAGTGACTCTTG...............................................................................................................................2112.00201000100000
...............................................................................................................................................................GGTCACTCTGTGCCTGTGC...............................................................................1912.00202000000000
.............................................................................................................TCAGGTACTTAGTGACTCTCATC--------.....................................................................................................................2312.00200200000000
...........................................................................................................GCTCAGGTACTTAGTGACTCTCA...............................................................................................................................2312.00202000000000
droEre2
ATCT--G--T-----------------GT--------ACAAGTC---A--GT------GAATAGT--TTAAGTGTCCA---------------------CTCGG-TGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGAC--ATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACGCAA-TCAACAA-------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................TCAGGTACTTAGTGACTCTCAA..............................................................................................................................22155099.00550995214644332546419715204
.............................................................................................................TCAGGTACTTAGTGACTCTCA...............................................................................................................................21151360.00513604785855216699521815647
..............................................................................................................CAGGTACTTAGTGACTCTCAA..............................................................................................................................2114679.0046794675100120
..............................................................................................................CAGGTACTTAGTGACTCTCA...............................................................................................................................2014162.0041624158010030
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................2313789.0037893462362641241973
.............................................................................................................TCAGGTACTTAGTGACTCTC................................................................................................................................2012705.0027052124888041603120
.............................................................................................................TCAGGTACTTAGTGACTCTCAC..............................................................................................................................2211216.0012161116346247290
.............................................................................................................TCAGGTACTTAGTGACTCT.................................................................................................................................191493.0049340952228470
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................241469.004694336241167
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGC...............................................................................221423.00423199952302887
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................231392.003923626213108
.............................................................................................................TCAGGTACTTAGTGACTCTCAT..............................................................................................................................221374.00374360313340
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------.....................................................................................................................221343.00343343000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------.....................................................................................................................231265.0026519931179180
...............................................................................................................AGGTACTTAGTGACTCTCAA..............................................................................................................................201229.00229215054050
.............................................................................................................TCAGGTACTTAGTGACTCTCG...............................................................................................................................211193.00193189002110
...............................................................................................................AGGTACTTAGTGACTCTCA...............................................................................................................................191188.00188176117030
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................231170.001701501003151
..............................................................................................................CAGGTACTTAGTGACTCTC................................................................................................................................191167.00167167000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTG................................................................................211144.001441234052100
..............................................................................................................CAGGTACTTAGTGACTCTCAC..............................................................................................................................211109.00109109000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------.....................................................................................................................231104.0010493713000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................25195.009590012020
.............................................................................................................TCAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................23193.009389021010
............................................................................................................CTCAGGTACTTAGTGACTCTCA...............................................................................................................................22174.0074610020110
............................................................................................................CTCAGGTACTTAGTGACTCTCAA..............................................................................................................................23158.005854010030
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------T....................................................................................................................24157.005754000210
.............................................................................................................TCAGGTACTTAGTGACTCTCT...............................................................................................................................21155.0055350512120
.............................................................................................................TCAGGTACTTAGTGACTCTCAG..............................................................................................................................22144.004444000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAT--------.....................................................................................................................22138.003838000000
............................................................................................................CTCAGGTACTTAGTGACTCTC................................................................................................................................21136.003660510240
..............................................................................................................CAGGTACTTAGTGACTCT.................................................................................................................................18134.003434000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACC--------A....................................................................................................................24133.003329301000
..............................................................................................................CAGGTACTTAGTGACTCTCAT..............................................................................................................................21133.003333000000
................................................................................................................GGTACTTAGTGACTCTCA...............................................................................................................................18128.002828000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------A....................................................................................................................23127.002727000000
................................................................................................................GGTACTTAGTGACTCTCAA..............................................................................................................................19124.002424000000
.............................................................................................................................................................GGGGTCACTCTGTGCCTGTGC...............................................................................21120.002020000000
.............................................................................................................TCAGGTACTTAGTGACTCTCACA--------A....................................................................................................................24118.001818000000
..............................................................................................................CAGGTACTTAGTGACTCTCAAC--------.....................................................................................................................22117.001717000000
.............................................................................................................TCAGGTACTTAGTGACTCTCC...............................................................................................................................21117.00171059011
..............................................................................................................CAGGTACTTAGTGACTCTCAG..............................................................................................................................21116.001616000000
...............................................................................................................AGGTACTTAGTGACTCTCAAA--------.....................................................................................................................21115.001513002000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAT--------T....................................................................................................................24114.001413100000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAA--------C....................................................................................................................24114.001414000000
.............................................................................................................................................................GGGGTCACTCTGTGCCTGTG................................................................................20113.001313000000
...............................................................................................................AGGTACTTAGTGACTCTC................................................................................................................................18113.001311010100
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------A....................................................................................................................24112.001210200000
..............................................................................................................CAGGTACTTAGTGACTCTCACC--------.....................................................................................................................22111.001111000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGCA..............................................................................2318.0088000000
.............................................................................................................TCAGGTACTTAGTGACTC..................................................................................................................................1817.0074100020
.............................................................................................................................................................GGGGTCACTCTGTGCCTGTGCT..............................................................................2217.0076100000
..............................................................................................................CAGGTACTTAGTGACTCTCACA--------.....................................................................................................................2217.0077000000
.............................................................................................................TCAGGTACTTAGTGACTCTA................................................................................................................................2016.0063000030
.............................................................................................................TCAGGTACTTAGTGACTCTT................................................................................................................................2016.0065000010
..............................................................................................................CAGGTACTTAGTGACTCTCAAA--------AA...................................................................................................................2416.0066000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGT...............................................................................2216.0066000000
...............................................................................................................AGGTACTTAGTGACTCTCAC..............................................................................................................................2016.0066000000
.............................................................................................................TCAGGTACTTAGTGACTCTCAAC--------T....................................................................................................................2416.0064110000
.............................................................................................................TCAGGTACTTAGTGACTCTCGC..............................................................................................................................2215.0055000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTG..................................................................................1914.0044000000
............................................................................................................................................................GGGGGTCACTCTGTGCCTGTGCT..............................................................................2314.0041102000
..............................................................................................................CAGGTACTTAGTGACTCTCAAG--------.....................................................................................................................2214.0044000000

Generated: 10/20/2015 at 07:37 PM