ID:

dmo-mir-3

 Coordinate:

scaffold_6496:20936993-20937057 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.2 -36.1 -35.9

Flybase annnotation

utr3 [utr3_minus_3619]; pre_miRNA [Dmoj\mir-3-RM]; miRNA [Dmoj\miR-3-RA]

No Repeatable elements found

Sense Strand Reads

AGCAAGGAAAAAGTCCAGTCAATTCAACGGAACTCTCGCAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGATTGGAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGAGGAGTGTTTCAGTTCCAGTGTTTCACT

***********************************.....((((((.((((((((((((((((((.(((((((((((...)))))....))))..)).)))))))))))))))))).)))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 V056

head

 V049

head

 V110

male body		 M046

female body
...........................................................................................TCACTGGGCAAAGTGTGTCTCA.................................................... 22 0 1 9703.00 9703 5724 3828 52 44 44 11
...........................................................................................TCACTGGGCAAAGTGTGTCTC..................................................... 21 0 1 4606.00 4606 4302 296 3 2 1 2
...........................................................................................TCACTGGGCAAAGTGTGTCT...................................................... 20 0 1 1411.00 1411 1312 89 3 1 1 5
...........................................................................................TCACTGGGCAAAGTGTGTCC...................................................... 20 1 1 415.00 415 415 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCT.................................................... 22 1 1 293.00 293 264 26 1 0 0 2
...........................................................................................TGACTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 225.00 225 225 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCC.................................................... 22 1 1 214.00 214 184 30 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGTCTC..................................................... 21 1 1 189.00 189 189 0 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 142.00 142 141 1 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCTC..................................................... 21 1 1 134.00 134 134 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCAT................................................... 23 1 1 114.00 114 106 7 0 1 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCAA................................................... 23 0 1 78.00 78 51 26 0 0 1 0
...........................................................................................TCACTGGGCAAAGTGCGTCTCA.................................................... 22 1 1 68.00 68 62 6 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCTCA.................................................... 22 1 1 64.00 64 39 25 0 0 0 0
...........................................................................................TTACTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 51.00 51 50 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGGGTCTCA.................................................... 22 1 1 48.00 48 44 3 0 1 0 0
.............................................................................................ACTGGGCAAAGTGTGTCTCA.................................................... 20 0 1 45.00 45 7 37 0 0 1 0
...........................................................................................TGACTGGGCAAAGTGTGTCT...................................................... 20 1 1 43.00 43 43 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTC....................................................... 19 0 1 42.00 42 39 2 1 0 0 0
...........................................................................................TCACTGGGCAAAGGGTGTCTCA.................................................... 22 1 1 41.00 41 37 3 0 1 0 0
...........................................................................................TTACTGGGCAAAGTGTGTCTC..................................................... 21 1 1 37.00 37 36 1 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCT...................................................... 20 1 1 36.00 36 36 0 0 0 0 0
...........................................................................................TCACTTGGCAAAGTGTGTCTCA.................................................... 22 1 1 35.00 35 34 1 0 0 0 0
.........................................................................................CATCACTGGGCAAAGTGTGTCT...................................................... 22 0 1 33.00 33 28 5 0 0 0 0
........................................................................TCTAACGATTGGAAACCCA.......................................................................... 19 0 1 31.00 31 30 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCATC.................................................. 24 2 1 30.00 30 28 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGGGTGTCTC..................................................... 21 1 1 29.00 29 29 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGCGTGTCTCA.................................................... 22 1 1 27.00 27 8 17 1 1 0 0
...........................................................................................TCACTTGGCAAAGTGTGTCTC..................................................... 21 1 1 27.00 27 27 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCAC................................................... 23 1 1 25.00 25 24 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGTGTCTCA.................................................... 22 1 1 23.00 23 16 6 1 0 0 0
...........................................................................................CCACTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 23.00 23 18 5 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCATT.................................................. 24 2 1 22.00 22 15 6 0 0 0 1
...........................................................................................TCACTGGGCAACGTGTGTCTCA.................................................... 22 1 1 22.00 22 8 14 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGGCTCA.................................................... 22 1 1 21.00 21 17 3 0 1 0 0
...........................................................................................TCACTGGGCAAAGTGAGTCTCA.................................................... 22 1 1 21.00 21 19 2 0 0 0 0
..........................................................................................CTCACTGGGCAAAGTGTGTCTCA.................................................... 23 1 1 21.00 21 18 3 0 0 0 0
...........................................................................................TCACTGGGCAAAGCGTGTCTC..................................................... 21 1 1 21.00 21 18 3 0 0 0 0
............................................................................................CACTGGGCAAAGTGTGTCTCA.................................................... 21 0 1 19.00 19 11 4 0 0 1 3
...........................................................................................TCACTGGGCAAAGTGTGTCTCTC................................................... 23 2 1 19.00 19 17 2 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCTC..................................................... 21 1 1 19.00 19 19 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCG.................................................... 22 1 1 18.00 18 5 13 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGTGTCTC..................................................... 21 1 1 17.00 17 17 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCTT................................................... 23 2 1 17.00 17 16 0 0 0 0 1
...........................................................................................TCACTGGGCAAAGTGTGGCTC..................................................... 21 1 1 16.00 16 15 1 0 0 0 0
...........................................................................................TCCCTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 14.00 14 11 3 0 0 0 0
...........................................................................................TCACTAGGCAAAGTGTGTCTCA.................................................... 22 1 1 14.00 14 3 11 0 0 0 0
.................................TCTCGCAGCTCTACTTTTG................................................................................................................. 19 0 1 13.00 13 6 7 0 0 0 0
...........................................................................................TCACTGTGCAAAGTGTGTCTC..................................................... 21 1 1 13.00 13 13 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGGGTCTC..................................................... 21 1 1 13.00 13 13 0 0 0 0 0
...........................................................................................TCACCGGGCAAAGTGTGTCTCA.................................................... 22 1 1 13.00 13 7 6 0 0 0 0
.........................................................................................CATCACTGGGCAAAGTGTGTCC...................................................... 22 1 1 13.00 13 13 0 0 0 0 0
...........................................................................................TAACTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 13.00 13 2 11 0 0 0 0
...........................................................................................TCACTGTGCAAAGTGTGTCTCA.................................................... 22 1 1 12.00 12 10 1 0 0 1 0
...........................................................................................TGACTGGGCAAAGTGTGTCTCT.................................................... 22 2 1 12.00 12 12 0 0 0 0 0
...........................................................................................GCACTGGGCAAAGTGTGTCTC..................................................... 21 1 1 12.00 12 12 0 0 0 0 0
................................CTCTCGCAGCTCTACTTTTG................................................................................................................. 20 0 1 11.00 11 6 5 0 0 0 0
...........................................................................................CCACTGGGCAAAGTGTGTCTC..................................................... 21 1 1 11.00 11 11 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGCCTCA.................................................... 22 1 1 11.00 11 7 4 0 0 0 0
.................................................................................................................AAATTGGGGCAACTAGCAC................................. 19 0 1 11.00 11 10 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCCCA.................................................... 22 1 1 11.00 11 6 5 0 0 0 0
...........................................................................................TCACTGGGAAAAGTGTGTCTCA.................................................... 22 1 1 11.00 11 6 5 0 0 0 0
...........................................................................................TCACTGGGCAAAGTTTGTCTC..................................................... 21 1 1 10.00 10 10 0 0 0 0 0
...........................................................................................ACACTGGGCAAAGTGTGTCTC..................................................... 21 1 1 10.00 10 9 1 0 0 0 0
...........................................................................................TCACTGGGCAGAGTGTGTCTCA.................................................... 22 1 1 10.00 10 3 7 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGCGTCTC..................................................... 21 1 2 9.50 19 19 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGAGTCTC..................................................... 21 1 1 9.00 9 9 0 0 0 0 0
...........................................................................................TTACTGGGCAAAGTGTGTCT...................................................... 20 1 1 9.00 9 9 0 0 0 0 0
....................................................GGATGCATTTTGTGCAGTTATG........................................................................................... 22 3 1 9.00 9 6 3 0 0 0 0
..........................................................................................CTCACTGGGCAAAGTGTGTCT...................................................... 21 1 1 9.00 9 9 0 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGTCTCC.................................................... 22 2 1 9.00 9 9 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCAG................................................... 23 1 1 9.00 9 7 2 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCC...................................................... 20 2 2 8.50 17 17 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGCCTC..................................................... 21 1 1 8.00 8 8 0 0 0 0 0
...........................................................................................TGATTGGGCAAAGTGTGTCTCA.................................................... 22 2 1 8.00 8 8 0 0 0 0 0
...........................................................................................GCACTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 8.00 8 8 0 0 0 0 0
...........................................................................................TCACTGAGCAAAGTGTGTCTCA.................................................... 22 1 1 8.00 8 4 4 0 0 0 0
...........................................................................................TCACTGGGCCAAGTGTGTCTCA.................................................... 22 1 1 8.00 8 0 8 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCAAA.................................................. 24 0 1 8.00 8 6 2 0 0 0 0
...........................................................................................TCACTGGGCAAGGTGTGTCTCA.................................................... 22 1 1 8.00 8 2 6 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTCTCTCA.................................................... 22 1 1 8.00 8 3 5 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTCTCTC..................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTCTC....................................................... 19 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCTCC.................................................... 22 2 1 7.00 7 3 4 0 0 0 0
...........................................................................................TCACTGGGCAACGTGTGTCTC..................................................... 21 1 1 7.00 7 5 2 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCTCC.................................................... 22 2 1 7.00 7 7 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTCTGTCTC..................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTTTCTC..................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................TCCCTGGGCAAAGTGTGTCTC..................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGTGTGTCTC..................................................... 21 1 1 7.00 7 7 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGGCT...................................................... 20 1 1 6.00 6 6 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTTTGTCTCA.................................................... 22 1 1 6.00 6 4 2 0 0 0 0
..............................................................................................CTGGGCAAAGTGTGTCTCA.................................................... 19 0 1 6.00 6 5 1 0 0 0 0
...........................................................................................ACACTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 6.00 6 3 3 0 0 0 0
...........................................................................................TCACTGGGCAAACTGTGTCTCA.................................................... 22 1 1 6.00 6 5 1 0 0 0 0
...........................................................................................TCACTGGGTAAAGTGTGTCTCA.................................................... 22 1 1 6.00 6 1 5 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCT...................................................... 20 1 1 6.00 6 5 1 0 0 0 0
...........................................................................................TCGCTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 6.00 6 5 1 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGTCC...................................................... 20 2 2 6.00 12 12 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTAA.................................................... 22 1 1 6.00 6 0 6 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCCC..................................................... 21 1 1 6.00 6 5 1 0 0 0 0
...........................................................................................CCACTGGGCAAAGTGTGTCT...................................................... 20 1 1 6.00 6 5 1 0 0 0 0
...............................ACTCTCGCAGCTCTACTTTTG................................................................................................................. 21 0 1 5.00 5 5 0 0 0 0 0
...........................................................................................TCACTTGGCAAAGTGTGTCT...................................................... 20 1 1 5.00 5 5 0 0 0 0 0
............................................................................................CACTGGGCAAAGTGTGTCT...................................................... 19 0 1 5.00 5 5 0 0 0 0 0
...........................................................................................TCACTGGGTAAAGTGTGTCTC..................................................... 21 1 1 5.00 5 2 3 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGGGTCT...................................................... 20 1 1 5.00 5 4 1 0 0 0 0
...........................................................................................GCACTGGGCAAAGTGTGTCT...................................................... 20 1 1 5.00 5 5 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTTTCA.................................................... 22 1 1 5.00 5 1 4 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTTTCTCA.................................................... 22 1 1 5.00 5 3 2 0 0 0 0
...........................................................................................TCACTAGGCAAAGTGTGTCTC..................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...........................................................................................TCACTGGACAAAGTGTGTCTCA.................................................... 22 1 1 5.00 5 3 2 0 0 0 0
...........................................................................................TCACTGGGCGAAGTGTGTCTCA.................................................... 22 1 1 5.00 5 1 4 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTG..................................................... 21 1 1 5.00 5 4 1 0 0 0 0
.............................................................................................ACTGGGCAAAGTGTGTCTC..................................................... 19 0 1 5.00 5 2 3 0 0 0 0
...........................................................................................TCACTGGGCAAAGTATGTCTCA.................................................... 22 1 1 5.00 5 3 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTT..................................................... 21 1 1 5.00 5 5 0 0 0 0 0
...........................................................................................TCACTGTGCAAAGTGTTTCTC..................................................... 21 2 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTTTCTCC.................................................... 22 2 1 4.00 4 3 1 0 0 0 0
..........................................................................................CTCACTGGGCAAAGTGTGTCTC..................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGGGTGTCT...................................................... 20 1 1 4.00 4 3 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTATCTC..................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGCCAAAGTGTGTCTC..................................................... 21 1 1 4.00 4 4 0 0 0 0 0
............................................................................................CACTGGGCAAAGTGTGTCTC..................................................... 20 0 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCTCT.................................................... 22 2 1 4.00 4 3 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTTA.................................................... 22 1 1 4.00 4 1 1 0 0 2 0
...........................................................................................TCATTGGGCAAAGTGTGTCTCAT................................................... 23 2 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCTAAGTGTGTCTCA.................................................... 22 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTGTCA.................................................... 22 1 1 4.00 4 1 3 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCATTT................................................. 25 3 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTATGTCTC..................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................TGATTGGGCAAAGTGTGTCTC..................................................... 21 2 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTCTCA...................................................... 20 2 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCTCT.................................................... 22 2 1 4.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTATCTCA.................................................... 22 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCGC..................................................... 21 1 1 4.00 4 4 0 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGGCTC..................................................... 21 2 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGTGCACAGTGTGTCTC..................................................... 21 2 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTCGGCAAAGTGTGTCTCA.................................................... 22 1 1 3.00 3 2 1 0 0 0 0
..........................................................................................CGCACTGGGCAAAGTGTGTCTCA.................................................... 23 2 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCAAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTGA.................................................... 22 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................TCACCGGGCAAAGTGTGTCTC..................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGCGAGTCTCA.................................................... 22 2 1 3.00 3 0 3 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCACA.................................................... 22 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGACTCA.................................................... 22 1 1 3.00 3 1 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGCGTGCCTCA.................................................... 22 2 1 3.00 3 0 3 0 0 0 0
...........................................................................................TCACTGGGCAAAGCGGGTCTCA.................................................... 22 2 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAGGTGTGTCTC..................................................... 21 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCTTC.................................................. 24 3 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGCCAAAGTGTGTCT...................................................... 20 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTTGGCAAAGTGTGTCTCT.................................................... 22 2 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAATTGTGTCTCA.................................................... 22 1 1 3.00 3 1 1 0 0 0 1
..............................................................................................CTGGGCAAAGTGTGTCTC..................................................... 18 0 1 3.00 3 3 0 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGTCTCAA................................................... 23 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTATGTCT...................................................... 20 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................TCTCACTGGGCAAAGTGTGTCC...................................................... 22 3 1 3.00 3 3 0 0 0 0 0
.........................................................................................CGTCACTGGGCAAAGTGTGTCT...................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCATAGTGTGTCTCA.................................................... 22 1 1 3.00 3 2 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTCTGTCTCA.................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TAACTGGGCAAAGTGTGTATCA.................................................... 22 2 1 3.00 3 0 2 1 0 0 0
...........................................................................................TCACTGGGCAGAGTGTGTCTC..................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................ACTGGGCAAAGTGTGTCT...................................................... 18 0 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGT........................................................ 18 0 1 3.00 3 2 1 0 0 0 0
.........................................................................................CACCACTGGGCAAAGTGTGTCT...................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCTCAT................................................... 23 2 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCGCTGGGCAAAGTGTGTCTC..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCATA.................................................. 24 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGGGGGTCTCA.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTTGGCAAAGTGTGTCTCC.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAACGTGTGTCT...................................................... 20 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGAGTCT...................................................... 20 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTCTGTCC...................................................... 20 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCCCA.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................GCACTGGGCAAAGTGTGTCC...................................................... 20 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCTCC.................................................. 24 3 1 2.00 2 2 0 0 0 0 0
...........................................................................................ACACTGGGCAAAGTGTGTCTCT.................................................... 22 2 1 2.00 2 1 1 0 0 0 0
.............................................................................................ACTGGGCAAAGTGTGTCTCC.................................................... 20 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGCGTCT...................................................... 20 1 2 2.00 4 4 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGGGTGTCTCC.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCCACGTGTGTCTCA.................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCAC..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGACAAAGTGTGTCTC..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCATTGGGAAAAGTGTGTCTCA.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAACGTGTGTCTCT.................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................................................CGCTGGGCAAAGTGTGTCTCA.................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................CATTACTGGGCAAAGTGTGTCT...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGTGTGTCTCT.................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGAGCAAAGTGTGTCTC..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGTGCAAAGTGTGTCC...................................................... 20 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTTTC..................................................... 21 1 2 2.00 4 4 0 0 0 0 0
...........................................................................................TCACGGGGCAAAGTGTGTCTC..................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAACGTGTGTCTTA.................................................... 22 2 1 2.00 2 0 2 0 0 0 0
.........................................................................................TCTCACTGGGCAAAGTGTGTCT...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGTGTCTCC.................................................... 22 2 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCAATGGGCAAAGTGTGTCTCA.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGTGTCT...................................................... 20 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCC...................................................... 20 2 1 2.00 2 2 0 0 0 0 0
..............................................................................................CGGGGCAAAGTGTGTCTCA.................................................... 19 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGCGTGTCTCT.................................................... 22 3 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGGCTCC.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCCAAGCGTGTCTCA.................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTATCA.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGTGCAAAGTGTGTCTCC.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..................................CTCGCAGCTCTACTTTTG................................................................................................................. 18 0 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCTCTGGGCAAAGTGTGTCTCA.................................................... 22 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGCCAAAGTGTGTCTCA.................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGTCTCATT.................................................. 24 3 1 2.00 2 2 0 0 0 0 0
...............................................................................................TGGGCAAAGTGTGTCTCA.................................................... 18 0 1 2.00 2 1 1 0 0 0 0
.................................................................................................................AAATTGGGGCAACTAGCACAA............................... 21 0 1 2.00 2 2 0 0 0 0 0
........................................................................................ATCTCACTGGGCAAAGTGTGTCTC..................................................... 24 3 1 2.00 2 2 0 0 0 0 0
...........................................................................................GCACTGGGCAAAGTGTGTCTCC.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.................................................................................................................AAATTGGGGCAACTAGCACA................................ 20 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACAGGGCAAAGTGTGTCTC..................................................... 21 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCACTGTGCAAAGTGTGTCT...................................................... 20 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGTGTCTCG.................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGAGTCTCT.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCCC..................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGGCTCT.................................................... 22 2 1 2.00 2 1 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGCGTTTCTCA.................................................... 22 2 1 2.00 2 0 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCTCT.................................................. 24 3 1 2.00 2 2 0 0 0 0 0
...........................................................................................TCCTTGGGCAAAGTGTGTCTCA.................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...........................................................................................TTACTGGGCAAAGTGTGTCC...................................................... 20 2 2 1.50 3 3 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGCGCGTCTCA.................................................... 22 2 2 1.50 3 1 2 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGCGTCTCT.................................................... 22 2 2 1.50 3 3 0 0 0 0 0
...........................................................................................TCACTAGGCAAAGTGTGTCTTA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGCCT...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................CCACAGGGCAAAGTGTGTCTCC.................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCTCAC................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TGACTTGGCAAAGTGTGTCTCA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................ACGGAACTCTCGAAGCTCTACTTTTG................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATTGGGCAAAGTGTGTCTC..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAACTGGGCAAAGTGTGTCTCC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGTGACTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCAATGGGCAAAGCGTGTCTC..................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCCT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAATGTGTGTCTCT.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTCTCTC..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTAT...................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................CTACTCACTGGGCAAAGTGTGTCTCA.................................................... 26 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGCGCCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAGAGTGTGTCAC..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGACAAAGTGTGTCTCT.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACCGGGAAAAGTGTGTATCA.................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGGGTCTCAT................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAAAATGTGTCT...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCCC................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGACAAAGTGTGTCTCC.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTTGCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TAACTGGGCACAGTGTGTCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCATTGTGCAAAGTGTGTCTCA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGTCTCAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGCCTC..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGAGTGTCTC..................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCAATGGGCAAAGGGTGTCTC..................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................CGCGCAGCTCTACTTTTG................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCCCTGGGCAAAGTGTGTC....................................................... 19 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGTGTGTCC...................................................... 20 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGTGTGTATCT.................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCCAAGTGCGTCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCGGAGTGTGTCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCGAAGTGTGTCGCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTCGGCAAAGTGTGTCTC..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCGAAGTGTGTCTCT.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCCTTGGGCAAAGTGTGTCTC..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................GCACTGGGCAAAGTGTGTCTCAT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGGGTCTCAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGTGAGTCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCCATGTGTGTCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTTTCTCATC.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
............................................................................................CACTGCGCAAAGTGTGTCT...................................................... 19 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAACTGAGCAAAGTTTGTCTCA.................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTACTGGGCAAAGTGTGTCTCAC................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCATTGGGCAGGGTGTGTCTCA.................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TGACTGGGCAAAGTGTGTCTCTA................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCACAGCGTGTCTCT.................................................... 22 3 2 1.00 2 0 2 0 0 0 0
.................................................................................................................AAATTGGGGCAACTAGCACT................................ 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAATGTGTGTCTC..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTACTTGGCAAAGTGTGTCTCA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCACAGTGTGTCTTA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAATGTGTGCCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCAGTGGGCAAAGTGTGTCTC..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCAAC.................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGAAAAGTGTGCATCA.................................................... 22 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................ACTGGGCAAAGTGTGTCTCT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCTAAGTGTGTCTCG.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCGAAGTGTGTCTC..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................GCACTGGGCGAAGTGTGTCT...................................................... 20 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCATTGGGCAAAGCGTGTCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGAGTCTCA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGAGCCTCAA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGAGTGTCTCT.................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................TCACTGGGCTAAGTGTGTCGCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAGAGTGTGTCTCAT................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAACGTGTGTCACC.................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGGGCAAAGTGTGTCTCATAT................................................. 25 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TGACTGGGCAAAGAGTGTCTCA.................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................CTGGGCATAGTGTGTCTC..................................................... 18 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCATTGGGCAAAGTGTGTCTCAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TCACTGGTCACAGTGTGTCTCA.................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TCACTGAGCAAAGTGTGTCTCT.................................................... 22 2 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

TCGTTCCTTTTTCAGGTCAGTTAAGTTGCCTTGAGAGCGTCGAGATGAAAACCCTACGTAAAACACGTCTACAGATTGCTAACCTTTGGGTAGTGACCCGTTTCACACAGAGTTTTAACCCCGTTGATCGTGTTTCCTCCTCACAAAGTCAAGGTCACAAAGTGA

***********************************.....((((((.((((((((((((((((((.(((((((((((...)))))....))))..)).)))))))))))))))))).)))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 M046

female body

 V110

male body		 V056

head

 V049

head
............................................................................................................................................GCACAGAGTCAAGGTCACA...... 19 2 2 3.50 7 7 0 0 0 0
.............................................................................................................................................CACAGAGTCAGGGTCACA...... 18 2 17 3.00 51 0 44 2 3 2
.............................................................................................................................................CACAGAGTCAAGGTCACA...... 18 1 1 3.00 3 3 0 0 0 0
............................................................................................................................................GCACAGAGTCAAGGTCACAC..... 20 3 10 2.70 27 27 0 0 0 0
.............................................................................................................................................CACAGAGTCAAGGTCACAC..... 19 2 5 1.40 7 7 0 0 0 0
..........................................................................................................................................CGGCACAGAGTCAAGGTCACA...... 21 3 2 0.50 1 1 0 0 0 0
..............................................................................................................................................ACAGAGTCAAGGTCACAC..... 18 2 12 0.42 5 5 0 0 0 0
...............................................................................TCACCTTGGGTTAGTGACCC.................................................................. 20 3 7 0.29 2 0 2 0 0 0
............................................................................................................................................GCACAGAGTCAAGGTCAC....... 18 2 4 0.25 1 1 0 0 0 0
..........................................................................................................................................CGTCACAGAGTCAGGGTCACA...... 21 3 5 0.20 1 0 1 0 0 0
.............................................................................................................................................CACAGAGTCAGGGTCACACAG... 21 3 6 0.17 1 0 0 1 0 0
...........................................................................................................................................GGCACAGAGTCAAGGTCACA...... 20 3 11 0.09 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20936943-20937107 - dmo-mir-3 Known_mirbase AGCAAGG---AAAAAGTCCAGTC--AATTC------A------------------ACGGA------------ACTCTC-G-CAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTA------GCA-------C----AAAGGA--------------GGAGTGT-TTCA--------GT---TCCAGTGTTTCACT
droVir3 scaffold_12875:4111895-4112077 + dvi-mir-3 Known_mirbase AGCAAAA---AAAAATAA---------A------A--ATAAAACAATATTATTAAATAAAAATA----CCAGAATCTC-A-TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCA---------G-------------AGAA--------------AATAACG-CA----GCTCAGATAT-TCCAGTGTTTCAGT
droGri2 scaffold_15112:2108961-2109130 - dgr-mir-3-1 Known_mirbase AGC-------TAAA-----AGAT------GT----------------------ATATAAAAATACTTGCCAAATTTTC-A-TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTA---------A-------------AGAA--------------AAGAATA-TAAAATGGTGA-ATTT-TGCAGTGTTTT-GC
droWil2 scf2_1100000004514:1651881-1652046 - dwi-mir-3 Known_mirbase GTTAAAA---AAAAAGGA---------GAGTAATCGA-------------------------------AT-------T-T-AGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAACCC-------A----AAAAGT--------------TAGCCAACCAAA--------CTT-----AGTGAGTGACT
dp5 3:12677703-12677883 - dps-mir-3 Known_mirbase AGTAAGC---GATC--------------AGCGAGCGTCTCAGCGCACATTGT-GAACGACGAT-----AC-------C-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTG-------T----ACAAGA--------------ATGGCGA-TAAA--------GTG-T----GTGTGTCGCA
droPer2 scaffold_2:8905783-8905963 + dpe-mir-3 Known_mirbase AGTAAGC---GATC--------------AGCGAGCGTCTCAGCGCACATTGT-GAACGACGAT-----AC-------C-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTG-------T----ACAAGA--------------ATGGCGA-TAAA--------GTG-T----GTGTGTCGCA
droAna3 scaffold_13266:9731184-9731325 + dan-mir-3 Known_mirbase TAAAAAAGCCGTCC-----AGAC--ATCTGTGAGCCC-------------------------------CC-------AAC-TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAA---AAATA-TA-------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCT---------CAACGAAGAATCAATTC------------------------------------------------------
droBip1 scf7180000396427:874173-874314 + GT----------CC-----AGAA--ATCTGTGAATCC-------------------------------TCC---GCTC-C-GGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAA---AATCA--------TAACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACT---------CAACAAAGAATCCAGTC-----------------------------------------------ATCAAAT
droKik1 scf7180000302679:89526-89660 - AGC-------AATC-------------CAGTGAACCA-------------------------------GC-------A-A-AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGA----TAC------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCA---------CGACGGAGACTCCAA-CA---------------------------------------------GCAGCACC
droFic1 scf7180000454039:848197-848306 - GA----------CC-----AGTA--AAGTGTTAACTA-------------------------------CC-------AAA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTT--A---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACAT---------C----------------------------------------------------------------------
droEle1 scf7180000491201:2014129-2014265 - GA----------CC-----ATCTCGAACAGTGAATTA-------------------------------TCG------A-A-AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTA--A---------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAT---------CATCGCTTCAACCATACA---------------------------------------------AAGCCAAT
droRho1 scf7180000780066:73490-73600 + GA----------CC-----AGCT--AACTGTGATCAA-------------------------------AC-------A-A-AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACAT---------C----------------------------------------------------------------------
droBia1 scf7180000302143:3059947-3060090 - GA----------CC-----AGCA--AAGTGTGAAGCA-------------------------------CCC------G-A-AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAG---------CATCGCAACGTAAACTG-------------------------AA--------AAA-T----ACGTGCCAAA
droTak1 scf7180000415384:83886-84021 + GA----------CC-----AGCT--TATTGTGAACCA-------------------------------ACC------A-A-AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA-------------GCAAC--CAAAGAA--------------ATAATCT-CAAA-------------------------GT
droEug1 scf7180000409474:2396698-2396811 + AA----------CC-----AGCT--AATAGTGAATCTA------------------------------CC-------AAAACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAAT---------C----------------------------------------------------------------------
dm3 chr2R:15549056-15549202 - dme-mir-3 Known_mirbase GA-------CGACC-----AGCT--AATTGTGAGCCA-------------------------------CC-------T-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAT---------CGTCGCAACTTCAAATCAAT--TAAATCAAAA-----------------------------------AATC
droSim2 2r:16196362-16196472 - dsi-mir-3 Known_mirbase GA-------CGACC-----AGCT--AATTGTGAACCA-------------------------------CC-------A-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCAC----------------------------------------------------------------------------------
droSec2 scaffold_1:13063796-13063929 - dse-mir-3 Known_mirbase GA-------CGACC-----AGCT--AATTGTGAATCA-------------------------------CC-------A-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAT---------CGTCGCAACTACAAATCA--------------------------------------------------ACA
droYak3 2R:13623584-13623747 + dya-mir-3 Known_mirbase GA-------CGACCAG--CAGCC--AAGTGTGAACCA-------------------------------TC-------A-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTT---------CGACGCAGCTACAAATCAACAGTAATGCAAAAG-------AGAA--------GAG-T--AAGTGT-----T
droEre2 scaffold_4845:9749313-9749446 - der-mir-3 Known_mirbase GA-------CGACC-----AGCC--AATTGTGAACCC-------------------------------AC-------C-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTT---------CGACGCAACTACAAATCA--------------------------------------------------ACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AGCAAGG---AAAAAGTCCAGTC--AATTC------A------------------ACGGA------------ACTCTC-G-CAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTA------GCA-------C----AAAGGA--------------GGAGTGT-TTCA--------GT---TCCAGTGTTTCACTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................2219703.0097031138284452572444
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................2114606.00460622962343021
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................2011411.0014115891313121
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................201415.0041500004150
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................221293.00293226012640
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................221214.00214030001840
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................231114.0011407101060
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................23178.007802600511
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................20145.00450370071
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................19142.00420201390
...............................................................................................................................................CATCACTGGGCAAAGTGTGTCT.................................................................................................22133.00330500280
...................................................................................................................TCTAACGA---------TTG--GAAACCCA.....................................................................................................................19131.00310100300
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.............................................................................................24130.00300200280
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................23125.00250100240
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................24122.00221600150
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21119.00193400111
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC..............................................................................................23119.00190200170
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................22118.00180130050
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT..............................................................................................23117.00171000160
..........................................................................TCTC-G-CAGCTCTACTTTTG.......................................................................................................................................................................19113.0013070060
...............................................................................................................................................CATCACTGGGCAAAGTGTGTCC.................................................................................................22113.00130000130
.........................................................................CTCTC-G-CAGCTCTACTTTTG.......................................................................................................................................................................20111.0011050060
.......................................................................................................................................................................AAATTGGGGCAACTA------GCA-------C----...........................................................19111.00110100100
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................2319.009020070
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................2418.008020060
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1916.006010050
........................................................................ACTCTC-G-CAGCTCTACTTTTG.......................................................................................................................................................................2115.005000050
..................................................................................................................................................CACTGGGCAAAGTGTGTCT.................................................................................................1915.005000050
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTG................................................................................................2115.005010040
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1915.005030020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTT................................................................................................2115.005000050
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2014.004000040
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT............................................................................................2514.004000040
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.............................................................................................2413.003000030
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTC.............................................................................................2413.003000030
....................................................................................................................................................CTGGGCAAAGTGTGTCTC................................................................................................1813.003000030
...................................................................................................................................................ACTGGGCAAAGTGTGTCT.................................................................................................1813.003000030
.................................................................................................................................................TCACTGGGCAAAGTGTGT...................................................................................................1813.003010020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCC.............................................................................................2412.002000020
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCC...............................................................................................2012.002010010
...........................................................................CTC-G-CAGCTCTACTTTTG.......................................................................................................................................................................1812.002010010
.....................................................................................................................................................TGGGCAAAGTGTGTCTCA...............................................................................................1812.002010010
.......................................................................................................................................................................AAATTGGGGCAACTA------GCA-------C----AA.........................................................2112.002000020
.......................................................................................................................................................................AAATTGGGGCAACTA------GCA-------C----A..........................................................2012.002000020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCT.............................................................................................2412.002000020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT..............................................................................................2311.001010000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCC..............................................................................................2311.001000010
.......................................................................................................................................................................AAATTGGGGCAACTA------GCA-------C----T..........................................................2011.001000010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC.............................................................................................2411.001000010
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCT...............................................................................................2011.001000010
droVir3
AGCAAAA---AAAAATAA---------A------A--ATAAAACAATATTATTAAATAAAAATA----CCAGAATCTC-A-TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCA---------G-------------AGAA--------------AATAACG-CA----GCTCAGATAT-TCCAGTGTTTCAGTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................22119010.001901033151096123111112921621211257223111152681821564212538752531620025581421386315147325619155223421000292832712000461683430001003181471744572
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................2111472.0014722534100000010013301100000000000001190528778351000038285547416017171044300047630001857200000266561042028
...............................................................................................GGATGCATTTTGTGCGGTTATG.................................................................................................................................................2211462.00146200031000000001110000000000000100001120165203381528000011060000000000000070000000300000000110
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................231518.00518000150000000001001000000000000000300755815867000003122121000010001241000151230000001771064
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................221409.0040900038000000000200000000000010000011910990000116512741633141200057110001111650010005428382012
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................201167.00167001350000000001000001000001001101601225245100001050232300100003180000000300000041105
..........................................................................TCTC-A-TAGCTCTGCTTTTG.......................................................................................................................................................................191123.0012300020000000000000000000000000000130920146100000110000000000000000000001100000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................201106.0010600000000000000100000000000000000407163617000001000000000000000230000000000000010000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23170.0070000120000000000000000000000000000204714500000231112020111000130000000200000011210
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................22161.0061000190000000001000000000000000000200110000000010000000000000201000020300000072100
...............................................................................................GGATGCATTTTGTGCGGTTAT..................................................................................................................................................21158.005800020000000001000000000000000000206793100000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................24149.004900030000000000000000000000010000406711500000010100000000000030000111200000010010
.........................................................................ATCTC-A-TAGCTCTGCTTTTG.......................................................................................................................................................................20145.0045000000000000010000000000000000003031321900001200000000000000000000001000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAA............................................................................................25120.00200001000000001000000000000000000010127400000000000000000000020000001000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................20118.001800018000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT..............................................................................................23115.00150003000000000000000000000000000000000000000102023021000000000000000000000000001
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21115.00150010000000000000000000010000000010212200000000000000000000050000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................24114.00140002000000000000000000000000000000000000000102112001100000020000000000000010000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................22114.00140100000000000000000000000000000000102000000000000010000000080000000000000000001
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................19113.00130002000000000000000000000000010000111000000010021110000000010000000000000000000
...........................................................................CTC-A-TAGCTCTGCTTTTG.......................................................................................................................................................................18113.00130000000000000000000000000000000010211500002010000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAA...........................................................................................26111.00110000000000000100000000000000000000132000000000000000000000010000001000000010100
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA..............................................................................................2119.0090000000000000000000000000000000020130300000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................2316.0060004000000000000000000000000000000100000000000000000000000000000000000000000100
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.............................................................................................2416.0060002000000000000000000000000000000012100000000000000000000000000000000000000000
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA...............................................................................................2316.0060000000000000000000000000000000000100100000010100000000000010000010000000000000
.......................................................................................................................................................................AAATTGTGGCTACCA---------G-------------AGAA--------------.......................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000004011
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAAA..........................................................................................2715.0050000000000000000000000000000000000103000000000000000000000000001000000000000000
.......................................................................................................................................................................AAATTGTGGCTACCA---------G-------------AGA......................................................1915.0050000000000000000000000000000000000001000000000000000000000000000000100000001101
........................................................................AATCTC-A-TAGCTCTGCTTTTG.......................................................................................................................................................................2115.0050000000000000000000000000000000000000300001000000000000000000000000100000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1915.0050001000000000000000000000000000000040000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.............................................................................................2415.0050000000000000000000000000000000000000000000100003100000000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT..............................................................................................2114.0040000000000000000000000000000000000102100000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTA................................................................................................2114.0040000000000000000000000000001000000001100000000000000000000010000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.............................................................................................2414.0040001000000000000000000000000000000000000000010101000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................2314.0040001000000000000000000000000000000021000000000000000000000000000000000000000000
.......................................................................................................................................................................AAATTGTGGCTACCA---------G-------------AG.......................................................1814.0040000000000000000000000000000000000000000000000000000000000010000000100000020000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1914.0040001000000000000000000000000000000001000000000001000000000010000000000000000000
...............................................................................................GGATGCATTTTGTGCGGTTATC.................................................................................................................................................2213.0030000000000000000000000000000000000010000001000000000000000010000000000000000000
.......................................................................................................................................................................AAATTGTGGCTACCA---------G-------------AGAA--------------AATAAA.................................2613.0030001000000000000000000000000000000000000000000000000000000000000000000000001010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC.............................................................................................2413.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATCT............................................................................................2513.0030000000000000000000000000000000000000000000110000010000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT..............................................................................................2313.0030000000000000000000000000000000000000000000100010000000000000000000000000001000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC............................................................................................2513.0030002000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................GGATGCATTTTGTGCGGTTA...................................................................................................................................................2013.0030000000000000000000000000000000010100100000000000000000000000000000000000000000
...............................................................................................GGATGCATTTTGTGCGGTTATGT................................................................................................................................................2312.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT.............................................................................................2212.0020000000000000000000000000000000000101000000000000000000000000000000000000000000
...........................................................................CTC-A-TAGCTCTGCTTT.........................................................................................................................................................................1612.0020000000000000000000000000000000000000000000110000000000000000000000000000000000
...............................................................................................GGATGCATTTTGTGCGGTTATT.................................................................................................................................................2212.0020000000000000000000000000000000001000000000000000000000000010000000000000000000
...............................................................................................GGATGCATTTTGTGCGGTTATGA................................................................................................................................................2312.0020000000000000000000000000000000010010000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC.............................................................................................2412.0020000000000000000000000000000000000000000000000001000000000000000000000000010000
...................................................................................................................................................ACTGGGCAAAGTGTGTCT.................................................................................................1812.0020000000000000000000000000000000000001100000000000000000000000000000000000000000
.....................................................................................................................TCTGCC---------TCC--AAAACC.......................................................................................................................1512.0020000000000000000000000000000000000000000000000020000000000000000000000000000000
.......................................................................................................................................................................AAATTGTGGCTACCA---------G-------------AGAA--------------AATAAC.................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000002000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CCAGAATCTC-A-TAGCTCTGCTTTTG.......................................................................................................................................................................2512.0020000000000000000000000000000000000000100000000000000000000000000000100000000000
.................................................................................................................................................TCACTGGGCAAAGTG......................................................................................................1531.3340000000000000000000000000000000000000000000021000010000000000000000000000000000
....................................................................................................CATTTTGTGCGGTTATG.................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................TTTGTGCGGTTATGTCTG.............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC...............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................................GGATGCATTTTGTGCGGTTATGC................................................................................................................................................2311.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................GGGATGCATTTTGTGCGGTTATG.................................................................................................................................................2311.0010000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGC.............................................................................................2411.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.............................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
droGri2
AGC-------TAAA-----AGAT------GT----------------------ATATAAAAATACTTGCCAAATTTTC-A-TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTA---------A-------------AGAA--------------AAGAATA-TAAAATGGTGA-ATTT-TGCAGTGTTTT-GCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................2221.50321
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCT...............................................................................................2120.50110
droWil2
GTTAAAA---AAAAAGGA---------GAGTAATCGA-------------------------------AT-------T-T-AGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAACCC-------A----AAAAGT--------------TAGCCAACCAAA--------CTT-----AGTGAGTGACTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................22142754.0042754092642474182
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................211559.0055921115441
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................201368.003680203651
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................201286.002860622771
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................231278.002780302741
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21151.00510110400
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23143.0043010420
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCATA.............................................................................................22140.0040000400
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................22139.0039000390
...............................................................................................GGATGCATTTTGTGCAGTTATG.................................................................................................................................................22136.0036000360
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................22129.0029010280
....................................A-------------------------------AT-------T-T-AGACCATGATTTTG.......................................................................................................................................................................19119.0019010180
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................22118.0018000180
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................23113.0013000130
.............................................................................................TGGGATGCATTTTGTGCAGTTA...................................................................................................................................................22111.0011000110
....................................................................AT-------T-T-AGACCATGATTTTG.......................................................................................................................................................................18110.0010000100
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................2419.00901080
.............................................................................................TGGGATGCATTTTGTGCAGTT....................................................................................................................................................2118.00800080
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1917.00700070
..............................................................................................................................................TCATCACTGGGCAAAGTGTGTC..................................................................................................2216.00600060
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.............................................................................................2416.00600060
.....................................................................................................................TCTTCATGTGATAATTCT------CTCA.....................................................................................................................2216.00600060
.....................................................................................................................................................TGGGCAAAGTGTGTCTCA...............................................................................................1815.00501040
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................1915.00500050
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1914.00400040
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT..............................................................................................2114.00400040
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2014.00404000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA..............................................................................................2114.00400040
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................2313.00300030
.................................................................................................................................................TCACTGGGCAAAGTGTGT...................................................................................................1813.00300030
..................................................................................................................................................CACTGGGCAAAGTGTGTCT.................................................................................................1912.00202000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTA................................................................................................2112.00200020
...............................................................................................................................................CATCACTGGGCAAAGTGTGTCT.................................................................................................2212.00200020
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT.............................................................................................2212.00200020
.......................................................................................................................................................................TAATTTTGGTAACCATATC............................................................................1912.00200020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCCA................................................................................................2112.00200020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTAG...............................................................................................2211.00100010
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA...............................................................................................2311.00100010
..............................................................................................................................................TCATCACTGGGCAAAGTGTGT...................................................................................................2111.00100010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.............................................................................................2411.00100010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC............................................................................................2511.00100010
...............................................................................................GGATGCATTTTGTGCAGTTAT..................................................................................................................................................2111.00100010
.................................................................................................................................................TCACTGGGCAAAGTGTGTA..................................................................................................1911.00100010
.............................................................................T-T-AGACCATGATTTTGGGA....................................................................................................................................................................1911.00100010
.................................................................................................ATGCATTTTGTGCAGTTATGT................................................................................................................................................2111.00100010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATATA...........................................................................................2611.00100010
.............................................................................................TGGGATGCATTTTGTGCAGTTT...................................................................................................................................................2211.00100010
.................................................................................................................................................TCACTGGGCAAAGTGTGTTCA................................................................................................2140.25100010
dp5
AGTAAGC---GATC--------------AGCGAGCGTCTCAGCGCACATTGT-GAACGACGAT-----AC-------C-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTG-------T----ACAAGA--------------ATGGCGA-TAAA--------GTG-T----GTGTGTCGCASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................22114794.001479407242804011228235010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................2111277.0012771111840332002000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................201222.0022201512408102000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................221113.00113054805901000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21199.0099079201800000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................20192.009205308400000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................22185.0085002905402000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23154.00540132901200000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................23145.0045052201800000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................20143.004300420100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................22131.003100103000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................23126.002602160800000
...............................................................................................GGATGCATTTTGTGCAGTTATG.................................................................................................................................................22125.002501402000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................23122.002202150500000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG.............................................................................................22115.001500001500000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................20113.001301120000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................24112.00120090201000
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................19111.00110140212010
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1916.0060200400000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1915.0050100400000
..............................................................T-----AC-------C-G-AGGCAACGATCCTG.......................................................................................................................................................................1915.0050010400000
.............................................................................................TGGGATGCATTTTGTGCAGTTA...................................................................................................................................................2214.0040010300000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................2414.0040020200000
..............................................................................................GGGATGCATTTTGTGCAGTTATG.................................................................................................................................................2314.0040010300000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCAGGA............................................................................................2213.0030000300000
...................................................................................................................................................ACTGGGCAAAGTGTGTCT.................................................................................................1813.0030010200000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCC...............................................................................................2113.0030120000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTT................................................................................................2113.0030020100000
............................................................................................CTGGGATGCATTTTGTGCAGTT....................................................................................................................................................2213.0030030000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA.............................................................................................2412.0020000200000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTTC...............................................................................................2212.0020000200000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTG................................................................................................2112.0020010100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC..............................................................................................2312.0020010100000
.............................................................................................TGGGATGCATTTTGTGCAGTT....................................................................................................................................................2112.0020000200000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCA..............................................................................................2312.0020000200000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCG.................................................................................................2012.0020000001010
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGGT............................................................................................2312.0020000200000
............................................................GAT-----AC-------C-G-AGGCAACGATCCTG.......................................................................................................................................................................2111.0010000100000
....................................................................AC-------C-G-AGGCAACGATCCTG.......................................................................................................................................................................1811.0010000100000
.....................................................................................................................................................TGGGCAAAGTGTGTCTCA...............................................................................................1811.0010100000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.............................................................................................2411.0010010000000
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA...............................................................................................2311.0010100000000
droPer2
AGTAAGC---GATC--------------AGCGAGCGTCTCAGCGCACATTGT-GAACGACGAT-----AC-------C-G-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTG-------T----ACAAGA--------------ATGGCGA-TAAA--------GTG-T----GTGTGTCGCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................2211931.0019316727170718544
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................211281.00281198866045
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................20145.004511281014
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................20115.00150015000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................22112.00120012000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................2117.007061000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................2216.006103011
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................2315.005004010
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG.............................................................................................2214.004004000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................2214.004103000
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................1914.004013000
...............................................................................................GGATGCATTTTGTGCAGTTATG.................................................................................................................................................2213.003003000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2012.002020000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................2312.002011000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT...............................................................................................2211.001001000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................2411.001000010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................2011.001000001
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT.............................................................................................2411.001000001
....................................................................................................................................................CTGGGCAAAGTGTGTCTCAGG.............................................................................................2111.001001000
.................................................................................................................................................TCACTGGGCAAAGTGTGT...................................................................................................1811.001001000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................2311.001001000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAG..............................................................................................2111.001001000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGA.............................................................................................2411.001001000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1911.001001000
........................................................................................................TTGTGCAGTTATGTCTACG--TGATCA--TC------C........................................................................................................................2811.001001000
droAna3
TAAAAAAGCCGTCC-----AGAC--ATCTGTGAGCCC-------------------------------CC-------AAC-TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAA---AAATA-TA-------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCT---------CAACGAAGAATCAATTC------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................2211247.001247197249603696564
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................211153.001532310719121
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................20147.004710293221
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21122.00221812001
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................22111.0011019100
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23110.0010421111
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................2219.009152100
...............................................................................................GGACGCATTTTGTGCAGTTATG.................................................................................................................................................2217.007043000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................2317.007231100
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................1917.007070000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................2415.005410000
.............................................................................................TGGGACGCATTTTGTGCAGTTA...................................................................................................................................................2213.003003000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................2013.003003000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCATT.............................................................................................2313.003300000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................2013.003030000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.............................................................................................2412.002020000
.............................................................................................TGGGACGCATTTTGTGCAGTT....................................................................................................................................................2112.002002000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2012.002110000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTT................................................................................................2112.002100010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................2212.002002000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................2312.002020000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................2312.002101000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1912.002002000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC...............................................................................................2211.001001000
....................................................................CC-------AAC-TGGCTACGATCTTG.......................................................................................................................................................................1911.001001000
..................................................................................................................................................CACTGGGCAAAGTGTGTCT.................................................................................................1911.001100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT.............................................................................................2411.001100000
...............................................................................................................................................CATCACTGGGCAAAGTGTGTCT.................................................................................................2211.001010000
............................................................................................TTGGGACGCATTTTGTGCAGTT....................................................................................................................................................2211.001000001
.................................................................................................................................................TCACTGGGCAAAGTGTGT...................................................................................................1811.001000100
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTC............................................................................................2511.001010000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.............................................................................................2411.001000100
...............................................................................................................................................CATCACTGGGCAAAGTGTGTCC.................................................................................................2211.001010000
....................................C-------------------------------CC-------AAC-TGGCTACGATCTTG.......................................................................................................................................................................2011.001010000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCA.................................................................................................2011.001010000
droBip1
GT----------CC-----AGAA--ATCTGTGAATCC-------------------------------TCC---GCTC-C-GGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAA---AATCA--------TAACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACT---------CAACAAAGAATCCAGTC-----------------------------------------------ATCAAATSizeHit CountTotal NormTotal
No Reads
droKik1
AGC-------AATC-------------CAGTGAACCA-------------------------------GC-------A-A-AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGA----TAC------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCA---------CGACGGAGACTCCAA-CA---------------------------------------------GCAGCACCSizeHit CountTotal NormTotal
No Reads
droFic1
GA----------CC-----AGTA--AAGTGTTAACTA-------------------------------CC-------AAA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTT--A---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACAT---------C----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GA----------CC-----ATCTCGAACAGTGAATTA-------------------------------TCG------A-A-AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTA--A---------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAT---------CATCGCTTCAACCATACA---------------------------------------------AAGCCAATSizeHit CountTotal NormTotal
No Reads
droRho1
GA----------CC-----AGCT--AACTGTGATCAA-------------------------------AC-------A-A-AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACAT---------C----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GA----------CC-----AGCA--AAGTGTGAAGCA-------------------------------CCC------G-A-AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAG---------CATCGCAACGTAAACTG-------------------------AA--------AAA-T----ACGTGCCAAASizeHit CountTotal NormTotal
No Reads
droTak1
GA----------CC-----AGCT--TATTGTGAACCA-------------------------------ACC------A-A-AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA-------------GCAAC--CAAAGAA--------------ATAATCT-CAAA-------------------------GTSizeHit CountTotal NormTotal
No Reads
droEug1
AA----------CC-----AGCT--AATAGTGAATCTA------------------------------CC-------AAAACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAAT---------C----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GA-------CGACC-----AGCT--AATTGTGAGCCA-------------------------------CC-------T-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAT---------CGTCGCAACTTCAAATCAAT--TAAATCAAAA-----------------------------------AATCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................2211109209.001109209000060431180437422110000000033283020130411251055934828207775138719176412695202001000000000000000000002102248678858606657869457105113478212488872219434029283213502133331146071015929552111103018260701811000031440088122137463126036617675369405421829100119465183210000012180316751620191012511258113016395224714152615921012956107000001127361221001437116545124610951033913566557132012000016584180491179251145131100353111022165710316582013790176921632795351025415973118132499344652561144152715622161122546513749212550181347412589103127392139133418942913488527535511717984124979362234929740
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................20152059.0052059000000019293000100000000220000100000466440203000130510000250100010000000000000000000000001876546634943310001002222110008478600018290780300001010100100000000004184164811421116700033000000000305160490200400111050004103701000090100000030008000480041801410030017200000001852290112121140001003210010400542911111000112244424344127310700160020122050505245401626123013263401302030110
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................21128441.0028441000000810242000000001000153001000000072110030018023010015020000000000000000000000000000102745578610711990102060051332051105563433500483821580700002100301300000011001919253527898557567010311211000000350180670400300002000000201100100010320000010000200013086483883124829228910250000640739001000001021123410101001262171003516412600423722412260147032803323113126481331251333162524236211631137040
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................20117909.001790900000002000000000000000000000000003972110101201000120020000000000000000000000000000287691200000000000100000000400001010000000000000000000000000143131452669976589101400150000000001000000000000000000000000011000010000000000000000003110000002517000000001381320000000100100002000001000100002010010521000001000863445017000110100000120470101210202110780002010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................2316909.0069090000201628810000000000002000101000003911011000010010030100020000000000000000000010007031861529522910010200100000011000223550009431800000000000000000000000003618029141091180000100000000000000022000000101000000000021010001000000009100000000011016180542460690000000010796000000010000000100000000000010000310002500000000023077001015040000002210300100100002000251000010
...............................................................................................GGATGCATCTTGTGCAGTTATG.................................................................................................................................................2214675.004675000000266601000000000000000000000000590000000000000000000000000000000000000000000000141798428969000000000000022500103187193000111351600000000000000000000000001282505364690000000000000000000000000000000000000000000000000000000000000000000000000000001060000000029130000000000000000000001000000000000000000100000000262300000000000000020000000001100000000010000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................2213589.003589000000000000000000000010000000000000001000601000312000000000000000000000000000000171510649000000000000000100001300031020210000000102200000000002042634731142840101000000000000000021000000000001000000000000000000000000000000000000000000010100000000685900010000001000001100000000000000000000100000000002197500100001110000000010010000000001040000010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................2212003.00200300000015000000000000002000000000001000000000000000002000000000000000000000000000069215327170010030000000003000011200020010000000100000010000000000236451372101970000010000000000000020000000000000000000010010000000000000000000000000010100011020000000047300000000000000000100000000000000000000001000001000484100000001100000100011000010000011010100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACTG............................................................................................2511844.001844000000000000000000000000000000000018390000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................2311758.00175800000018800000000000000100000000009000100000100000000000000000000000000000000000081171017914000000011000000000000800032012300000000000000000000000092248274305000000000000000000000000000000010010000000000000000000000000000000000110003010440210000000046340000000000000000000010000000000010000000000000000561300000000000000000000000000000000030000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................2111525.00152500000025200000000000000000000000006000000000000000000000000000000000000000000000079415622290000000000000001000003000120020000000000000000000000007911210730000001000000000000010000000000000000000000000000000000000000000000000000001200040300000000181800000000000000001000000000000000000001000000000008607001000100001020000000000201000000120000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................2211316.001316000000616200000000000000000000000000000000000000000000000000000000000000000000000080208142000000000000000000010080002310600100000000000000000000043827539310000000000000000000011000000000000000000000000000000000000000000000000000000000000000000282910000000001000001000000000001000001000000000001007774001000000000001100010000000001000160000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................191965.009650000000000000000000000000000000000219000000000300000000000000000000000000000000000013411156000000000000000002000300051080000000000000000000000001761131073019000100000000000000000000000000000100001000010000000000000000010000000010000003011000000029330000000000000000000000000000000000000000000000000176600000000000000000000000000000000010001000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................231889.0088900000012100000000000000000000000002100000000000000000000000000000000000000000000004714192370000000000000001000010000150070000000000000000000000005212716032000000000000000000000000000000000000000000000000000000000000000000000000000110114041000000014190000000000000000000000000000000000000001000000100295200100000000000000000000000000010030000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................241509.00509000000010000000000000000000000000020000000100000000000000000000000000000000000000151714250000000001000000000000000600000000000000000000000000046112135124000010000000000000000000000000000000000000010000000000000000000000000000003011290110000000034000000000000000000000000000000000000000000000000075000000020000000121000000000000000010000000
....................................A-------------------------------CC-------T-A-AGGTCCCGATCCTG.......................................................................................................................................................................191450.0045000000000000000000000000000000000000000000000000000000000000000000000000000000000074805144910000100020000000000990001200400000000000000000000000007000300000000000000000000000000000000000000000000000000000000000000000000001000200010000000000210000000000000000200000000000000000000000000000000134100000000000000000000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................191386.00386000000000000000000000000000000000010001000000000001000000000000000000000000000000203010000000000000000000000000000000000000000000000000000023554622610000000000000000000000000000000000000000000000000000000000000000000010000000050400000000490000000000000000000000000000000000000000000000000199100100000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGT...................................................................................................181324.003240000000000000000000000000000000000001000000020000000000000000000000000000000000013165540900000000000000000000210002120600000000000000000000000010550040000000000000000000000000000000000000000000000000010000000000000000000000000010000000000713000000000000000000000000110000000000000000000000089800000000000000000000000000000000020000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA..............................................................................................221320.0032000000010000000000000000000000000004000000000000000000000000000000000000000000000074221162200000000000000000000150001400200000000000000000000000059816000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119100000000000000000000000000000000000000000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................191303.0030300000000000000000000000000000000000000000000000000000000000000000000000000000000033023000000000000000000000100001000000000000000000000000002754320000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000230000000000000000000000000000000000000000000000000165300000000000000000000000000000100020000000
...............................................................................................GGATGCATCTTGTGCAGTTA...................................................................................................................................................201295.00295000000000000000000000000000000000025000000000000000000000000000000000000000000000007007130000000000000000000061000000700000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.............................................................................................221295.00295000000100000000000000000000000000030000000000000000000000000000000000000000000000386710400000000000000000000010005003000000000000000000000000171974900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000740000000000000000000000000000000000000000000000000146300000000000000000000100000000000000000000
...................................CA-------------------------------CC-------T-A-AGGTCCCGATCCTG.......................................................................................................................................................................201276.00276000000260000000000000000000000000040000000000000000000000000000000000000000000000614442370000000000000000000045000122080000000000000000000000001100060000000000000000000000000000000000000000000000000000000000000000000000000010003010000000011000000000000000010000000000000000000000000000000055400000000000000000000000000000000000000010
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA..............................................................................................211263.0026300000000000000000000000000000000004000000000000000000000000000000000000000000000021141711310000000000000000000020008100000000000000000000000000103140021000000000000000000000000000000000000000000000000000000000000000000000000010004000000000045000000000000000000000000000000000010000000000000080100000000000010000000000000000000000000000
...............................................................................................GGATGCATCTTGTGCAGTTAT..................................................................................................................................................211247.0024700000027000000000000000000000000001900000000000000000000000000000000000000000000007783770000001000000010000006140009110000000000000000000000000241000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA...............................................................................................231246.0024600000000010000000000000000000000000000000000000000000000000000000000000000000000050841570000010000000000000065000800400000000000000000000000041480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000330000000000000000100000000000000000000000000000000103100000000000000000000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.............................................................................................221217.0021700000001000000000000000000000000002000000000100000000000000000000000000000000000071102700000000001000000000500002000000000000000000000000000847391400000000000000000000000000000000000000000000000000000000000000000000000000000001010000000022000000000010000000000000000000000000000000000000063000000000000000000000000000000000000000000
.....................................................................................................................................................TGGGCAAAGTGTGTCTCA...............................................................................................181146.00146000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000012780000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000240000000000000000000000000000000000000000000000000107100000000000000000000000000000000000000000
....................................................................CC-------T-A-AGGTCCCGATCCTG.......................................................................................................................................................................181137.0013700000000000000000000000000000000000000000000000000000000000000000000000000000000030101772000000000000000000000300004008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000036000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................241136.001360000000000000000000000000000000000100000000000000000000000000000000000000000000004010100000000000000000000000000000000000000000000000000000151838000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000014000000000000000000000000000000000000000000000000048000000000001000000000000000000000020000000
..............................................................................................GGGATGCATCTTGTGCAGTTATG.................................................................................................................................................231107.001070000000100000000000000000000000000100000000000000000000000000000000000000000000002590015000000000000000000002110003000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037000000000000000000000000000000000000000000
.......................................................................................................................................................................AGATCCTGGCCACAT---------CGTCGC.................................................................21189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000081514300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000042100000000000000000000000000000000120000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCC...............................................................................................20187.00870000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000059000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.............................................................................................24179.0079000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000200000000000000000000000000062416600000000000000000000000000000000000000000000000000000000000000000000000000000000010000000012000000000000000000000000000000000000000000000000018000000000000000100000000000000000000000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................20177.007700000000000000000000000000000000003700000000000000000000000000000000000000000000005043001000000000000000000000003200000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.............................................................................................24171.00710000000000000000000000000000000000500000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000008000000000000000000000000000000000020000000
...............................................................................................GGATGCATCTTGTGCAGTTATT.................................................................................................................................................22170.00700000000000000000000000000000000000000000000000000000000000000000000000000000000002613002000000000000000000001200000000000000000000000000000003121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCA.................................................................................................20163.00630000000000000000000000000000000000320000000000000000000000000000000000000000000000602220000000000000000000000000100100000000000000000000000032100100000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000007000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................20162.00620000000000000000000000000000000000480000000000000000000000000000000000000000000000002200000000000000000000000000000100000000000000000000000020100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCT.................................................................................................18161.00610000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000395006000000000000000000000000000000000000000000000000000000000000010000000000000000010000000023000000000000000000000000000000000000000001000000025200100001000000000000000000000000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCT...............................................................................................20160.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.............................................................................................24152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000005903100000000000000000000000003000000000000000000000000000437000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000011000000000000000000000000000000000000000000000000011000000000000000000100000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................23152.005200000000000000000000000000000000000000000000000000000000000000000000000000000000030600000000000000000000000000010010000000000000000000000001093000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000018000000000000000000000000000000000000000000
..................................................................................................TGCATCTTGTGCAGTTATGTTT..............................................................................................................................................22147.004700000006000000000000000000000000000000000000000000000000000000000000000000000000010112340000000000000007000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTT................................................................................................21147.00470000001220000000000000000000000000500000001010000000000000000000000000000000000003031000000000000000000000000000000000000000000000000000100044002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000014000000000000000000000000100000000000000000
.......................................................................................................................................................................AGATCCTGGCCACAT---------CGTCGCA................................................................22144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000330200000000010000000000000000000000000000000000000000000135020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
.......................................................................................................................................................................AGATCCTGGCCACAT---------CGTCG..................................................................20140.0040000000000000000000000000000000000080000000000000000000000000000000000000000000000300000000000000000000000003000000500000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000008400000000000000000000000000000000000000000
droSim2
GA-------CGACC-----AGCT--AATTGTGAACCA-------------------------------CC-------A-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCAC----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................22134191.003419160507210612158144211128425774200000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................2112151.002151239156730011157214217301000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................231527.005270010016123826501500000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................201215.00215006010037010822500000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................20177.007700100000161404600000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................22141.0041000000003203600000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................22140.00401016000002301800000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................22131.0031001000002102700000
....................................A-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................19129.00290016000000001300000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21120.002000110000650700000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA..............................................................................................22115.001500000000590100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................19114.001400001000760000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................24114.0014000000001040000000
...................................CA-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................20113.001300900000000400000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23110.001000200000520001000
...............................................................................................GGATGCATCTTGTGCAGTTATG.................................................................................................................................................2219.00900000000100800000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.............................................................................................2219.00900000000360000000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1918.00800200000130200000
.................................................................................................................................................TCACTGGGCAAAGTGTG....................................................................................................1717.00700000000142000000
....................................................................CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................1815.00500500000000000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA..............................................................................................2115.00500000000410000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................2314.00400100000100200000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2014.00401300000000000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................2413.00300000000000102000
.....................................................................................................................................................TGGGCAAAGTGTGTCTCA...............................................................................................1813.00300000000201000000
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA...............................................................................................2313.00300000000210000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTA................................................................................................2112.00200000000000200000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCAAGA............................................................................................2212.00200000000200000000
..................................................................................................TGCATCTTGTGCAGTTATGTTC..............................................................................................................................................2212.00200000000110000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAA.............................................................................................2312.00200000000110000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT............................................................................................2512.00200000000000002000
........................................................................................................................................................GCAAAGTGTGTCTCA...............................................................................................1521.50300000000210000000
.................................ACCA-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................2211.00100000000000100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.............................................................................................2411.00100000000100000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTTT...............................................................................................2211.00100000000000100000
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC................................................................................................2211.00100100000000000000
..................................................................................................TGCATCTTGTGCAGTTATGTTT..............................................................................................................................................2211.00100000000010000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCT.................................................................................................1811.00100000000100000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTTG...............................................................................................2211.00100000000000100000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCC...............................................................................................2011.00100000000000100000
droSec2
GA-------CGACC-----AGCT--AATTGTGAATCA-------------------------------CC-------A-A-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAT---------CGTCGCAACTACAAATCA--------------------------------------------------ACASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................22126152.002615235748237012046
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................2111658.001658294159431
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................201434.004345041910
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................201188.001882017313
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................23178.007840704
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21163.0063290304
....................................A-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................19149.004950440
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23135.003500350
.................................................................................................................................................TCACTGGGCAAAGTGTGT...................................................................................................18131.003100301
...............................................................................................GGATGCATCTTGTGCAGTTATG.................................................................................................................................................22129.002900290
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................22128.002800280
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................19124.002401221
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................22123.002300203
...................................CA-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................20118.001820142
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................22116.001610150
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................19115.001500150
....................................................................CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................18111.001110100
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................23110.00100091
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1916.0060060
.....................................................................................................................................................TGGGCAAAGTGTGTCTCA...............................................................................................1816.0060060
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................2415.0051031
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA...............................................................................................2315.0052030
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA..............................................................................................2115.0050050
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................2414.0040040
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTT................................................................................................2114.0040040
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2014.0044000
.......................................................................................................................................................................AGATCCTGGCCACAT---------CGTCG..................................................................2013.0030030
..............................................................................................GGGATGCATCTTGTGCAGTTATG.................................................................................................................................................2312.0020020
...................................................................................................................................................ACTGGGCAAAGTGTGTCT.................................................................................................1812.0021010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA.............................................................................................2412.0020020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCCA................................................................................................2112.0020020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCA.................................................................................................2012.0020020
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC............................................................................................2512.0020020
................................................................................................................................................ATCACTGGGCAAAGTGTGTCT.................................................................................................2112.0020020
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.............................................................................................2212.0020020
..................................TCA-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................2112.0020020
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT..............................................................................................2111.0010010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.............................................................................................2411.0010010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT...............................................................................................2211.0010010
..................................................................................................................................................CACTGGGCAAAGTGTGTCT.................................................................................................1911.0010010
..............................................................................................GGGATGCATCTTGTGCAGTTAT..................................................................................................................................................2211.0010010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.............................................................................................2411.0010010
.................................ATCA-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................2211.0010001
................................AATCA-------------------------------CC-------A-A-AGGTCCCGATCCTG.......................................................................................................................................................................2311.0010010
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.............................................................................................2211.0010010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT..............................................................................................2311.0010010
.......................................................................................................................................................................AGATCCTGGCCACAT---------CGT....................................................................1811.0010010
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT..............................................................................................2211.0010010
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA..............................................................................................2211.0010010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC............................................................................................2511.0010010
................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC................................................................................................2211.0010010
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.............................................................................................2411.0010010
droYak3
GA-------CGACCAG--CAGCC--AAGTGTGAACCA-------------------------------TC-------A-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTT---------CGACGCAGCTACAAATCAACAGTAATGCAAAAG-------AGAA--------GAG-T--AAGTGT-----TSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................22119463.00194630339095102502347150000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................2113579.0035795833042572300000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................201410.0041000378302000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................201149.001490014900000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................221126.001260075480300000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................231120.001200077430000000
...............................................................................................GGATGCATCTTGTGCAGTCATG.................................................................................................................................................221114.001140069450000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................221103.001030086160100000
....................................A-------------------------------TC-------A-A-AGGTCCTGATCCTG.......................................................................................................................................................................19181.00810060210000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................20176.00760010660000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21157.00570619320000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................23148.0048004530000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23147.0047004160000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................19141.0041003830000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................22130.0030006240000000
...................................CA-------------------------------TC-------A-A-AGGTCCTGATCCTG.......................................................................................................................................................................20126.0026002330000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................24117.0017001700000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA..............................................................................................22116.001600790000000
..............................................................................................GGGATGCATCTTGTGCAGTCATG.................................................................................................................................................23115.0015001230000000
.......................................................................................................................................................................AGATCTTGGCCACTT---------CGAC...................................................................19114.0014001220000000
............................................................................................CTGGGATGCATCTTGTGCAGTC....................................................................................................................................................22112.001200480000000
..................................CCA-------------------------------TC-------A-A-AGGTCCTGATCCTG.......................................................................................................................................................................21111.0011001010000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................2419.00900630000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2017.00701600000000
....................................................................TC-------A-A-AGGTCCTGATCCTG.......................................................................................................................................................................1816.00600330000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................2316.00600420000000
...............................................................................................GGATGCATCTTGTGCAGTC....................................................................................................................................................1915.00500410000000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1914.00400220000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.............................................................................................2414.00400400000000
.................................ACCA-------------------------------TC-------A-A-AGGTCCTGATCCTG.......................................................................................................................................................................2214.00400400000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA..............................................................................................2114.00400130000000
.......................................................................................................................................................................AGATCTTGGCCACTT---------CGACGC.................................................................2114.00400400000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1913.00300120000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.............................................................................................2213.00300210000000
..............................................................................................GGGATGCATCTTGTGCAGTC....................................................................................................................................................2013.00300300000000
...............................................................................................GGATGCATCTTGTGCAGTCAT..................................................................................................................................................2113.00300210000000
..............................................................................................GGGATGCATCTTGTGCAGTCA...................................................................................................................................................2113.00300210000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC...............................................................................................2212.00200020000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCT...............................................................................................2012.00200110000000
.......................................................................................................................................................................AGATCTTGGCCACTT---------CGACGCAG...............................................................2312.00200200000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.............................................................................................2412.00200200000000
................................AACCA-------------------------------TC-------A-A-AGGTCCTGATCCTG.......................................................................................................................................................................2312.00200200000000
.................................................................................................................................................TCACTGGGCAAAGTGTGT...................................................................................................1812.00200110000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.............................................................................................2412.00200110000000
.......................................................................................................................................................................AGATCTTGGCCACTT---------CGACG..................................................................2012.00200200000000
.......................................................................................................................................................................AGATCTTGGCCACTT---------CGACA..................................................................2012.00200200000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT............................................................................................2512.00200200000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC.............................................................................................2412.00200200000000
....................................................................................................................................................CTGGGCAAAGTGTGTCTC................................................................................................1812.00200200000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT..............................................................................................2312.00200200000000
.....................................................................................................................................................TGGGCAAAGTGTGTCTCA...............................................................................................1811.00100010000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATAC............................................................................................2511.00100100000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC..............................................................................................2311.00100100000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTGT...............................................................................................2211.00100010000000
..................................CCA-------------------------------TC-------A-A-AGGTCCTGATCCT........................................................................................................................................................................2011.00100100000000
droEre2
GA-------CGACC-----AGCC--AATTGTGAACCC-------------------------------AC-------C-A-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTT---------CGACGCAACTACAAATCA--------------------------------------------------ACASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA...............................................................................................2214885.00488511633276330829520
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTC................................................................................................211329.0032955180087250
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCA...............................................................................................21193.009389004000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCT.................................................................................................20177.00771331030210
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA..............................................................................................23140.0040203017000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC...............................................................................................22129.002902126000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCA...............................................................................................20118.001840014000
....................................C-------------------------------AC-------C-A-AGGTCCTGATCCTG.......................................................................................................................................................................19118.00188109000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT...............................................................................................22116.00161509100
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT..............................................................................................23110.00103502000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG...............................................................................................2219.0091008000
...................................CC-------------------------------AC-------C-A-AGGTCCTGATCCTG.......................................................................................................................................................................2019.0096102000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC..............................................................................................2318.0080305000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCC.................................................................................................2018.0080800000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTC................................................................................................2017.0076100000
...............................................................................................GGATGCATCTTGTGCAGTTATG.................................................................................................................................................2216.0066000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTG................................................................................................2114.0044000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTC..................................................................................................1914.0041300000
..................................................................................................................................................CACTGGGCAAAGTGTGTCT.................................................................................................1913.0033000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG..............................................................................................2312.0022000000
.......................................................................................................................................................................AGATCCTGGCCACTT---------CGACG..................................................................2012.0021001000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTT................................................................................................2112.0020001010
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA..............................................................................................2212.0022000000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCA...............................................................................................1912.0021001000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA..............................................................................................2112.0021001000
.................................ACCC-------------------------------AC-------C-A-AGGTCCTGATCCTG.......................................................................................................................................................................2212.0021100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.............................................................................................2412.0022000000
...............................................................................................GGATGCATCTTGTGCAGTTA...................................................................................................................................................2011.0010100000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTC................................................................................................1911.0010001000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCA.................................................................................................2011.0010100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.............................................................................................2411.0010100000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAG.............................................................................................2311.0011000000
...................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.............................................................................................2211.0010001000
...................................CC-------------------------------AC-------C-A-AGGTCCTGATCC.........................................................................................................................................................................1811.0010100000
....................................................................................................................................................CTGGGCAAAGTGTGTCTCAAT.............................................................................................2111.0011000000
..................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT..............................................................................................2211.0011000000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.............................................................................................2411.0010100000
.................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT..............................................................................................2311.0010100000
.......................................................................................................................................................................AGATCCTGGCCACTT---------CGAC...................................................................1911.0010100000

Generated: 10/20/2015 at 11:20 PM