ID:

dmo-mir-286

 Coordinate:

scaffold_6496:20936787-20936889 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.0 -27.6 -27.6

Flybase annnotation

utr3 [utr3_minus_3618]; pre_miRNA [Dmoj\mir-286-RM]; miRNA [Dmoj\miR-286-RA]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

AGTGTTTCACTTTCAGTGTTTCATTTCCAGTGTTCGAAAATTATAAAATTTTAAAATTAAATGGCGATTGTCGGTATGGTCTCTTTTTCAACATATACACCAAACATTCTATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAATTTCAATTATAAAATTTCTAGTGCATGGTTCAAACTTAAA

***********************************************((((((((((((....((((.(((((((.(((((.((((............................)))).))))).)))).))).))))....))))))))))))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V049

head

 V110

male body		 V056

head
......................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................. 23 0 1 1201864.00 1201864 1066266 135541 19 22 11 5
......................................................................................................................TTACTAGACCGAACACTCGTGCT.............................................................. 23 1 1 283191.00 283191 283161 30 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................. 23 1 1 229220.00 229220 228995 225 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGC............................................................... 22 0 1 172966.00 172966 159220 13735 9 2 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGCC.............................................................. 23 2 1 59533.00 59533 59533 0 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGCT.............................................................. 23 1 1 50629.00 50629 50554 75 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGC............................................................... 22 1 1 42724.00 42724 42722 2 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................. 24 1 1 24007.00 24007 22559 1446 0 1 1 0
......................................................................................................................TGATTAGACCGAACACTCGTGCC.............................................................. 23 2 1 10394.00 10394 10394 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGT............................................................... 22 1 1 10104.00 10104 7499 2605 0 0 0 0
......................................................................................................................TTATTAGACCGAACACTCGTGCT.............................................................. 23 2 1 9996.00 9996 9996 0 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGC............................................................... 22 1 1 7446.00 7446 7437 9 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................. 24 1 1 6588.00 6588 6352 234 1 0 1 0
......................................................................................................................TTACTAGACCGAACACTCGTGCTT............................................................. 24 2 1 6077.00 6077 6075 2 0 0 0 0
......................................................................................................................TAACTAGACCGAACACTCGTGCT.............................................................. 23 1 1 5410.00 5410 5324 86 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGTT.............................................................. 23 1 1 5001.00 5001 4428 572 0 0 0 1
......................................................................................................................TGCCTAGACCGAACACTCGTGCT.............................................................. 23 1 1 4742.00 4742 4710 32 0 0 0 0
......................................................................................................................TGACTAGACCGACCACTCGTGCT.............................................................. 23 1 1 4647.00 4647 4480 167 0 0 0 0
......................................................................................................................TCACTAGACCGAACACTCGTGCT.............................................................. 23 1 1 4556.00 4556 4518 38 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTG................................................................ 21 0 1 4274.00 4274 3560 712 2 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................. 23 2 1 3832.00 3832 3830 2 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................. 24 0 1 3555.00 3555 3193 361 1 0 0 0
.....................................................................................................................CTGACTAGACCGAACACTCGTGCT.............................................................. 24 1 1 3553.00 3553 3449 104 0 0 0 0
......................................................................................................................TGACTAGCCCGAACACTCGTGCT.............................................................. 23 1 1 3495.00 3495 3415 80 0 0 0 0
......................................................................................................................TGACTAGACCGAACATTCGTGCT.............................................................. 23 1 1 3479.00 3479 3407 72 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGAT.............................................................. 23 1 1 3035.00 3035 2937 98 0 0 0 0
......................................................................................................................TGACTATACCGAACACTCGTGCT.............................................................. 23 1 1 2877.00 2877 2843 34 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCTTGCT.............................................................. 23 1 1 2604.00 2604 2572 32 0 0 0 0
......................................................................................................................TGACTAGACCGCACACTCGTGCT.............................................................. 23 1 1 2370.00 2370 584 1784 0 2 0 0
......................................................................................................................TGACTAGACCGAACACTCGGGCT.............................................................. 23 1 1 2352.00 2352 2140 212 0 0 0 0
......................................................................................................................TGACTAGACCAAACACTCGTGCT.............................................................. 23 1 1 2272.00 2272 2182 90 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTTCT.............................................................. 23 1 1 2237.00 2237 2174 63 0 0 0 0
......................................................................................................................TGACTGGACCGAACACTCGTGCT.............................................................. 23 1 1 2174.00 2174 2029 145 0 0 0 0
......................................................................................................................TTATTAGACCGAACACTCGTGCC.............................................................. 23 3 1 2124.00 2124 2124 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACCCTCGTGCT.............................................................. 23 1 1 2113.00 2113 1788 325 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGT............................................................... 22 2 1 1958.00 1958 1958 0 0 0 0 0
......................................................................................................................CGACTAGACCGAACACTCGTGCT.............................................................. 23 1 1 1951.00 1951 1763 187 1 0 0 0
......................................................................................................................TTACTAGCCCGAACACTCGTGCT.............................................................. 23 2 1 1938.00 1938 1932 6 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGCGCT.............................................................. 23 1 1 1897.00 1897 1422 475 0 0 0 0
......................................................................................................................TGACTAGAACGAACACTCGTGCT.............................................................. 23 1 1 1852.00 1852 1430 422 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................. 23 1 1 1832.00 1832 1748 84 0 0 0 0
......................................................................................................................TTACTAGACCGACCACTCGTGCT.............................................................. 23 2 1 1751.00 1751 1747 4 0 0 0 0
......................................................................................................................GGACTAGACCGAACACTCGTGCT.............................................................. 23 1 1 1691.00 1691 1659 32 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGCTC............................................................. 24 2 1 1673.00 1673 1672 1 0 0 0 0
......................................................................................................................TTATTAGACCGAACACTCGTGC............................................................... 22 2 1 1506.00 1506 1506 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTTGTGCT.............................................................. 23 1 1 1241.00 1241 1109 132 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGTT.............................................................. 23 2 1 1205.00 1205 1204 1 0 0 0 0
......................................................................................................................TTACTATACCGAACACTCGTGCT.............................................................. 23 2 1 1165.00 1165 1164 1 0 0 0 0
......................................................................................................................GTACTAGACCGAACACTCGTGCT.............................................................. 23 2 1 1163.00 1163 1163 0 0 0 0 0
......................................................................................................................TGACTAGACTGAACACTCGTGCT.............................................................. 23 1 1 1129.00 1129 977 152 0 0 0 0
......................................................................................................................TAACTAGACCGAACACTCGTGCC.............................................................. 23 2 1 1114.00 1114 1113 1 0 0 0 0
..............................................................GGCGATTGTCGGTATGGTCTCT....................................................................................................................... 22 0 1 1086.00 1086 1076 10 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGAT.............................................................. 23 2 1 1060.00 1060 1060 0 0 0 0 0
......................................................................................................................CTACTAGACCGAACACTCGTGCT.............................................................. 23 2 1 1058.00 1058 1054 4 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGCTT............................................................. 24 2 1 1040.00 1040 1040 0 0 0 0 0
......................................................................................................................AGACTAGACCGAACACTCGTGCT.............................................................. 23 1 1 1037.00 1037 999 37 1 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTCCT.............................................................. 23 1 1 1036.00 1036 985 51 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGAC.............................................................. 23 3 1 1030.00 1030 1030 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................. 23 1 1 1020.00 1020 945 75 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTAC............................................................... 22 1 1 1004.00 1004 994 10 0 0 0 0
......................................................................................................................TTACTAGACCGAACATTCGTGCT.............................................................. 23 2 1 964.00 964 964 0 0 0 0 0
......................................................................................................................TGACTAGGCCGAACACTCGTGCT.............................................................. 23 1 1 956.00 956 757 198 0 0 0 1
......................................................................................................................TTACTAGACCGAACACTCGTG................................................................ 21 1 1 955.00 955 955 0 0 0 0 0
.......................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................. 22 0 1 930.00 930 869 58 3 0 0 0
......................................................................................................................TGACTAGACCGACCACTCGTGCC.............................................................. 23 2 1 925.00 925 920 5 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCTTGCT.............................................................. 23 2 1 917.00 917 917 0 0 0 0 0
......................................................................................................................TGCCTAGACCGAACACTCGTGCC.............................................................. 23 2 1 916.00 916 915 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGAGCT.............................................................. 23 1 1 910.00 910 806 104 0 0 0 0
......................................................................................................................TGGCTAGACCGAACACTCGTGCT.............................................................. 23 1 1 903.00 903 739 164 0 0 0 0
......................................................................................................................TCACTAGACCGAACACTCGTGCC.............................................................. 23 2 1 897.00 897 896 1 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGCTA............................................................. 24 1 1 891.00 891 891 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACCCGTGCT.............................................................. 23 1 1 889.00 889 663 226 0 0 0 0
......................................................................................................................TGACTAGACCGAATACTCGTGCT.............................................................. 23 1 1 887.00 887 768 119 0 0 0 0
......................................................................................................................TTCCTAGACCGAACACTCGTGCT.............................................................. 23 2 1 866.00 866 864 2 0 0 0 0
......................................................................................................................TAACTAGACCGAACACTCGTGC............................................................... 22 1 1 863.00 863 848 15 0 0 0 0
......................................................................................................................TGACTAGACCGAGCACTCGTGCT.............................................................. 23 1 1 805.00 805 555 250 0 0 0 0
......................................................................................................................ATACTAGACCGAACACTCGTGCT.............................................................. 23 2 1 788.00 788 787 1 0 0 0 0
.....................................................................................................................CTGACTAGACCGAACACTCGTGCC.............................................................. 24 2 1 785.00 785 785 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGA............................................................... 22 1 1 776.00 776 748 27 0 0 0 1
......................................................................................................................TGACTAGACCGAACATTCGTGCC.............................................................. 23 2 1 734.00 734 734 0 0 0 0 0
......................................................................................................................TGACTAGACCGGACACTCGTGCT.............................................................. 23 1 1 701.00 701 306 395 0 0 0 0
......................................................................................................................TGCCTAGACCGAACACTCGTGC............................................................... 22 1 1 699.00 699 695 4 0 0 0 0
......................................................................................................................TGACTAGCCCGAACACTCGTGCC.............................................................. 23 2 1 691.00 691 690 1 0 0 0 0
......................................................................................................................TCACTAGACCGAACACTCGTGC............................................................... 22 1 1 676.00 676 674 2 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTACT.............................................................. 23 1 1 668.00 668 571 97 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCTTGCC.............................................................. 23 2 1 665.00 665 665 0 0 0 0 0
......................................................................................................................TGACTAGACCGACCACTCGTGC............................................................... 22 1 1 660.00 660 642 18 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCATGCT.............................................................. 23 1 1 654.00 654 531 123 0 0 0 0
......................................................................................................................TGACTATACCGAACACTCGTGCC.............................................................. 23 2 1 646.00 646 646 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACGCGTGCT.............................................................. 23 1 1 644.00 644 413 231 0 0 0 0
......................................................................................................................TTACTAGACCAAACACTCGTGCT.............................................................. 23 2 1 624.00 624 624 0 0 0 0 0
......................................................................................................................TGACTTGACCGAACACTCGTGCT.............................................................. 23 1 1 610.00 610 593 17 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGCG.............................................................. 23 2 1 598.00 598 597 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACAATCGTGCT.............................................................. 23 1 1 597.00 597 196 401 0 0 0 0
......................................................................................................................TGACCAGACCGAACACTCGTGCT.............................................................. 23 1 1 566.00 566 467 99 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGGGCT.............................................................. 23 2 1 562.00 562 562 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACGCTCGTGCT.............................................................. 23 1 1 555.00 555 389 166 0 0 0 0
......................................................................................................................TGACTAGCCCGAACACTCGTGC............................................................... 22 1 1 548.00 548 544 4 0 0 0 0
.....................................................................................................................CTGACTAGACCGAACACTCGTGC............................................................... 23 1 1 540.00 540 526 14 0 0 0 0
......................................................................................................................TTACTAGACCGAACCCTCGTGCT.............................................................. 23 2 1 529.00 529 527 2 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTTCT.............................................................. 23 2 1 517.00 517 516 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACATTCGTGC............................................................... 22 1 1 507.00 507 499 8 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................. 23 2 1 494.00 494 485 9 0 0 0 0
......................................................................................................................TGATTATACCGAACACTCGTGCT.............................................................. 23 2 1 470.00 470 470 0 0 0 0 0
.....................................................................................................................CGGACTAGACCGAACACTCGTGCT.............................................................. 24 2 1 461.00 461 461 0 0 0 0 0
......................................................................................................................TGACTGGACCGAACACTCGTGCC.............................................................. 23 2 1 460.00 460 460 0 0 0 0 0
......................................................................................................................TGACTATACCGAACACTCGTGC............................................................... 22 1 1 450.00 450 450 0 0 0 0 0
......................................................................................................................TGACTAGATCGAACACTCGTGCT.............................................................. 23 1 1 447.00 447 332 115 0 0 0 0
......................................................................................................................TGACTAGACCAAACACTCGTGCC.............................................................. 23 2 1 430.00 430 429 1 0 0 0 0
......................................................................................................................TGACTAGACCCAACACTCGTGCT.............................................................. 23 1 1 416.00 416 287 129 0 0 0 0
......................................................................................................................TGACTAAACCGAACACTCGTGCT.............................................................. 23 1 1 411.00 411 365 46 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTTCC.............................................................. 23 2 1 409.00 409 408 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACCCTCGTGCC.............................................................. 23 2 1 400.00 400 398 2 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGGGCC.............................................................. 23 2 1 394.00 394 391 3 0 0 0 0
......................................................................................................................TGACTACACCGAACACTCGTGCT.............................................................. 23 1 1 387.00 387 369 18 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTTGTGCT.............................................................. 23 2 1 385.00 385 385 0 0 0 0 0
..............................................................GGCGATTGTCGGTATGGTCTCC....................................................................................................................... 22 1 1 382.00 382 382 0 0 0 0 0
......................................................................................................................CGACTAGACCGAACACTCGTGCC.............................................................. 23 2 1 381.00 381 380 1 0 0 0 0
......................................................................................................................TTACTAGACTGAACACTCGTGCT.............................................................. 23 2 1 380.00 380 380 0 0 0 0 0
......................................................................................................................TTACTAGCCCGAACACTCGTGCC.............................................................. 23 3 1 376.00 376 376 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGCGCT.............................................................. 23 2 1 375.00 375 375 0 0 0 0 0
......................................................................................................................TTACTAGACCGACCACTCGTGCC.............................................................. 23 3 1 373.00 373 373 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTTT............................................................ 25 1 1 353.00 353 320 33 0 0 0 0
......................................................................................................................TTACTAGAACGAACACTCGTGCT.............................................................. 23 2 1 345.00 345 342 3 0 0 0 0
......................................................................................................................TGCTTAGACCGAACACTCGTGCT.............................................................. 23 2 1 340.00 340 340 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACCCTCGTGC............................................................... 22 1 1 337.00 337 304 33 0 0 0 0
......................................................................................................................TGACTGGACCGAACACTCGTGC............................................................... 22 1 1 332.00 332 312 20 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGT............................................................... 22 2 1 326.00 326 322 4 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCG.................................................................. 19 0 1 325.00 325 318 7 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCCTGCT.............................................................. 23 1 1 321.00 321 283 38 0 0 0 0
......................................................................................................................GGACTAGACCGAACACTCGTGCC.............................................................. 23 2 1 315.00 315 315 0 0 0 0 0
......................................................................................................................TGACTAGACCGTACACTCGTGCT.............................................................. 23 1 1 315.00 315 37 278 0 0 0 0
......................................................................................................................TGACTAGCCCGAACACGCGTGCT.............................................................. 23 2 1 307.00 307 307 0 0 0 0 0
......................................................................................................................TGACTAGACCAAACACTCGTGC............................................................... 22 1 1 301.00 301 289 12 0 0 0 0
......................................................................................................................TGATTAGCCCGAACACTCGTGCT.............................................................. 23 2 1 289.00 289 287 2 0 0 0 0
..............................................................GTCGATTGTCGGTATGGTCTCT....................................................................................................................... 22 1 1 287.00 287 287 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTAC............................................................... 22 2 1 287.00 287 287 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGGGC............................................................... 22 1 1 283.00 283 259 24 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGCTC............................................................. 24 2 1 279.00 279 278 1 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTCCT.............................................................. 23 2 1 278.00 278 278 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTTC............................................................ 25 2 1 277.00 277 267 10 0 0 0 0
......................................................................................................................TGACTAGACCGATCACTCGTGCT.............................................................. 23 1 1 276.00 276 43 233 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCTTGC............................................................... 22 1 1 275.00 275 271 4 0 0 0 0
......................................................................................................................TTACTAGACCGACCACTCGTGC............................................................... 22 2 1 275.00 275 275 0 0 0 0 0
......................................................................................................................TGACAAGACCGAACACTCGTGCT.............................................................. 23 1 1 272.00 272 253 19 0 0 0 0
......................................................................................................................TGACTAGAACGAACACTCGTGCC.............................................................. 23 2 1 272.00 272 270 2 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCTTGCT.............................................................. 23 2 1 270.00 270 270 0 0 0 0 0
....................................................................................................................TCTGACTAGACCGAACACTCGTGCT.............................................................. 25 2 1 269.00 269 268 1 0 0 0 0
......................................................................................................................TGACTAGACCGACCACTCGTGAT.............................................................. 23 2 1 260.00 260 258 2 0 0 0 0
......................................................................................................................GTACTAGACCGAACACTCGTGCC.............................................................. 23 3 1 257.00 257 257 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTTC............................................................... 22 1 1 256.00 256 250 6 0 0 0 0
......................................................................................................................CGACTAGACCGAACACTCGTGC............................................................... 22 1 1 255.00 255 238 17 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGCGCC.............................................................. 23 2 1 255.00 255 253 2 0 0 0 0
......................................................................................................................TGACTAGACCGAACACGCGTGAT.............................................................. 23 2 1 248.00 248 246 2 0 0 0 0
......................................................................................................................TTACTAGGCCGAACACTCGTGCT.............................................................. 23 2 1 247.00 247 247 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGCGC............................................................... 22 1 1 245.00 245 175 70 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGCA.............................................................. 23 2 1 242.00 242 242 0 0 0 0 0
......................................................................................................................CTACTAGACCGAACACTCGTGCC.............................................................. 23 3 1 242.00 242 242 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTTGTGCC.............................................................. 23 2 1 241.00 241 240 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTAT............................................................ 25 0 1 241.00 241 169 72 0 0 0 0
......................................................................................................................TGACTAGAACGAACACTCGTGC............................................................... 22 1 1 240.00 240 194 46 0 0 0 0
......................................................................................................................TTACTATACCGAACACTCGTGCC.............................................................. 23 3 1 239.00 239 239 0 0 0 0 0
......................................................................................................................TGACTAGCCCGAACACTCGTGAT.............................................................. 23 2 1 239.00 239 238 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTAGTGCT.............................................................. 23 1 1 238.00 238 79 159 0 0 0 0
......................................................................................................................TTACTAGCCCGAACACTCGTGC............................................................... 22 2 1 238.00 238 238 0 0 0 0 0
......................................................................................................................TGACTAGACAGAACACTCGTGCT.............................................................. 23 1 1 237.00 237 102 135 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGT................................................................. 20 0 1 237.00 237 139 96 2 0 0 0
......................................................................................................................GGACTAGACCGAACACTCGTGC............................................................... 22 1 1 231.00 231 230 1 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGA............................................................... 22 2 1 230.00 230 230 0 0 0 0 0
......................................................................................................................TTATTAGACCGAACACTCGTGCTT............................................................. 24 3 1 226.00 226 226 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTCCC.............................................................. 23 2 1 218.00 218 218 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGAGCT.............................................................. 23 2 1 218.00 218 217 1 0 0 0 0
.......................................................................................................................GACTAGACCGAACACTCGTGCC.............................................................. 22 1 1 217.00 217 217 0 0 0 0 0
......................................................................................................................TTACTGGACCGAACACTCGTGCT.............................................................. 23 2 1 214.00 214 214 0 0 0 0 0
......................................................................................................................TGACTAGACTGAACACTCGTGCC.............................................................. 23 2 1 212.00 212 212 0 0 0 0 0
......................................................................................................................AGACTAGACCGAACACTCGTGCC.............................................................. 23 2 1 212.00 212 211 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGTTT............................................................. 24 2 1 211.00 211 197 14 0 0 0 0
......................................................................................................................TGACTAGACCGACCCCTCGTGCT.............................................................. 23 2 1 209.00 209 201 8 0 0 0 0
......................................................................................................................TGACTAGACCGAACACACGTGCT.............................................................. 23 1 1 207.00 207 135 72 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGAC.............................................................. 23 3 1 202.00 202 202 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCTTGCC.............................................................. 23 3 1 202.00 202 202 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGGT.............................................................. 23 1 1 198.00 198 156 42 0 0 0 0
......................................................................................................................TGACTAGACCGCACACTCGTGC............................................................... 22 1 1 194.00 194 67 127 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTTGTGC............................................................... 22 1 1 192.00 192 181 11 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGTT.............................................................. 23 2 1 191.00 191 190 1 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGCG.............................................................. 23 2 1 190.00 190 190 0 0 0 0 0
......................................................................................................................TGATTAGACCGAACATTCGTGCT.............................................................. 23 2 1 190.00 190 190 0 0 0 0 0
......................................................................................................................TGACTAGACCGACCACTCGTTCT.............................................................. 23 2 1 187.00 187 181 6 0 0 0 0
......................................................................................................................GTACTAGACCGAACACTCGTGC............................................................... 22 2 1 185.00 185 185 0 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTG................................................................ 21 1 1 177.00 177 175 2 0 0 0 0
......................................................................................................................TGACTAGACCTAACACTCGTGCT.............................................................. 23 1 1 177.00 177 136 41 0 0 0 0
......................................................................................................................TGACTAGACTGAACACTCGTGC............................................................... 22 1 1 176.00 176 152 24 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGAGCC.............................................................. 23 2 1 174.00 174 172 2 0 0 0 0
......................................................................................................................TTACTATACCGAACACTCGTGC............................................................... 22 2 1 171.00 171 171 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTCT............................................................... 22 2 1 170.00 170 169 1 0 0 0 0
......................................................................................................................TTACTAGACCGCACACTCGTGCT.............................................................. 23 2 1 169.00 169 168 1 0 0 0 0
......................................................................................................................TGGCTAGACCGAACACTCGTGCC.............................................................. 23 2 1 167.00 167 167 0 0 0 0 0
.....................................................................................................................CTCACTAGACCGAACACTCGTGCT.............................................................. 24 2 1 165.00 165 165 0 0 0 0 0
......................................................................................................................ATACTAGACCGAACACTCGTGCC.............................................................. 23 3 1 164.00 164 164 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTACT.............................................................. 23 2 1 163.00 163 163 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTGGTGCT.............................................................. 23 1 1 162.00 162 150 12 0 0 0 0
......................................................................................................................TTCCTAGACCGAACACTCGTGCC.............................................................. 23 3 1 161.00 161 161 0 0 0 0 0
......................................................................................................................AGACTAGACCGAACACTCGTGC............................................................... 22 1 1 161.00 161 155 6 0 0 0 0
......................................................................................................................TTACTAGACCGAACATTCGTGCC.............................................................. 23 3 1 160.00 160 160 0 0 0 0 0
......................................................................................................................TGACTAGACCGAAAACTCGTGCT.............................................................. 23 1 1 160.00 160 69 91 0 0 0 0
..........................................................................................................................TAGACCGAACACTCGTGCT.............................................................. 19 0 1 159.00 159 112 47 0 0 0 0
......................................................................................................................TTACTAGACCGAACACCCGTGCT.............................................................. 23 2 1 158.00 158 156 2 0 0 0 0
......................................................................................................................TGACTAGGCCGAACACTCGTGCC.............................................................. 23 2 1 158.00 158 158 0 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGCTA............................................................. 24 1 1 155.00 155 155 0 0 0 0 0
......................................................................................................................CTACTAGACCGAACACTCGTGC............................................................... 22 2 1 154.00 154 154 0 0 0 0 0
......................................................................................................................TTACTAGACCGAGCACTCGTGCT.............................................................. 23 2 1 152.00 152 152 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACATTCGTGC............................................................... 22 2 1 151.00 151 151 0 0 0 0 0
......................................................................................................................TTACCAGACCGAACACTCGTGCT.............................................................. 23 2 1 150.00 150 150 0 0 0 0 0
......................................................................................................................TTGCTAGACCGAACACTCGTGCT.............................................................. 23 2 1 150.00 150 150 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTACC.............................................................. 23 2 1 149.00 149 149 0 0 0 0 0
......................................................................................................................TGACTAGACCGAGCACTCGTGCC.............................................................. 23 2 1 144.00 144 142 2 0 0 0 0
......................................................................................................................TTACTAGACCGAATACTCGTGCT.............................................................. 23 2 1 142.00 142 142 0 0 0 0 0
......................................................................................................................TTCCTAGACCGAACACTCGTGC............................................................... 22 2 1 142.00 142 141 1 0 0 0 0
......................................................................................................................TGATTAGAACGAACACTCGTGCT.............................................................. 23 2 1 140.00 140 137 3 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCATGCT.............................................................. 23 2 1 139.00 139 139 0 0 0 0 0
......................................................................................................................TGATTAGACCGAACACTCGTGAT.............................................................. 23 2 1 139.00 139 139 0 0 0 0 0
......................................................................................................................TGACGAGACCGAACACTCGTGCT.............................................................. 23 1 1 137.00 137 120 17 0 0 0 0
......................................................................................................................TGACTAGGCCGAACACTCGTGC............................................................... 22 1 1 137.00 137 117 20 0 0 0 0
......................................................................................................................TGAATAGACCGAACACTCGTGCT.............................................................. 23 1 1 137.00 137 37 100 0 0 0 0
..................................................................................................................GATCTGACTAGACCGAACACTCGTGCT.............................................................. 27 3 1 136.00 136 136 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................. 24 1 1 136.00 136 122 14 0 0 0 0
........................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................. 21 0 1 136.00 136 123 13 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGTC.............................................................. 23 3 1 135.00 135 135 0 0 0 0 0
......................................................................................................................TGACTAGACCGAATACTCGTGCC.............................................................. 23 2 1 134.00 134 134 0 0 0 0 0
......................................................................................................................TGACTAGACCGAGCACTCGTGC............................................................... 22 1 1 131.00 131 107 24 0 0 0 0
......................................................................................................................TTATTATACCGAACACTCGTGCT.............................................................. 23 3 1 131.00 131 131 0 0 0 0 0
.....................................................................................................................CGGACTAGACCGAACACTCGTGCC.............................................................. 24 3 1 129.00 129 129 0 0 0 0 0
......................................................................................................................TGACTAGAGCGAACACTCGTGCT.............................................................. 23 1 1 128.00 128 102 26 0 0 0 0
......................................................................................................................TGATTAGACCGACCACTCGTGCT.............................................................. 23 2 1 128.00 128 128 0 0 0 0 0
......................................................................................................................ATACTAGACCGAACACTCGTGC............................................................... 22 2 1 126.00 126 126 0 0 0 0 0
......................................................................................................................TGGCTAGACCGAACACTCGTGC............................................................... 22 1 1 124.00 124 103 21 0 0 0 0
......................................................................................................................TGACTAGACCGAACATTCTTGCT.............................................................. 23 2 1 122.00 122 122 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACCCGTGCC.............................................................. 23 2 1 120.00 120 115 5 0 0 0 0
..............................................................GGCGATTGTCGGTATGGTCTC........................................................................................................................ 21 0 1 118.00 118 114 4 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCTTGC............................................................... 22 2 1 118.00 118 118 0 0 0 0 0
......................................................................................................................TGAGTAGACCGAACACTCGTGCT.............................................................. 23 1 1 117.00 117 94 23 0 0 0 0
.......................................................................................................................GACTAGACCGAACACTCGTGC............................................................... 21 0 1 116.00 116 108 8 0 0 0 0
......................................................................................................................TTACTAGACCGAACCCTCGTGCC.............................................................. 23 3 1 116.00 116 116 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCATGCC.............................................................. 23 2 1 113.00 113 113 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGAGC............................................................... 22 1 1 113.00 113 102 11 0 0 0 0
......................................................................................................................TGACTTGACCGAACACTCGTGCC.............................................................. 23 2 1 111.00 111 109 2 0 0 0 0
......................................................................................................................TGACTAGCCCGAACACGCGTGAT.............................................................. 23 3 1 111.00 111 111 0 0 0 0 0
......................................................................................................................TGATTATACCGAACACTCGTGCC.............................................................. 23 3 1 109.00 109 109 0 0 0 0 0
..............................................................GTCGATTGTCGGTATGGTCTCC....................................................................................................................... 22 2 1 107.00 107 107 0 0 0 0 0
......................................................................................................................TTATTAGCCCGAACACTCGTGCT.............................................................. 23 3 1 107.00 107 107 0 0 0 0 0
......................................................................................................................TTACTTGACCGAACACTCGTGCT.............................................................. 23 2 1 107.00 107 107 0 0 0 0 0
......................................................................................................................TGACTAGACCGCACACTCGTGCC.............................................................. 23 2 1 107.00 107 100 7 0 0 0 0
......................................................................................................................TGATTAGACCAAACACTCGTGCT.............................................................. 23 2 1 105.00 105 105 0 0 0 0 0
......................................................................................................................TGACTAGAACGAACAATCGTGCT.............................................................. 23 2 1 105.00 105 0 105 0 0 0 0
......................................................................................................................TGACTAGACCGAACTCTCGTGCT.............................................................. 23 1 1 105.00 105 42 62 0 1 0 0
......................................................................................................................TGATTAGACTGAACACTCGTGCT.............................................................. 23 2 1 105.00 105 104 1 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTCC............................................................... 22 1 1 104.00 104 100 4 0 0 0 0
......................................................................................................................TGTCTAGACCGAACACTCGTGCT.............................................................. 23 1 1 103.00 103 74 29 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCTCC............................................................ 25 2 1 103.00 103 98 5 0 0 0 0
......................................................................................................................TTACTAGACCAAACACTCGTGCC.............................................................. 23 3 1 103.00 103 103 0 0 0 0 0
......................................................................................................................TGACCAGACCGAACACTCGTGCC.............................................................. 23 2 1 102.00 102 102 0 0 0 0 0
.....................................................................................................................CTGTCTAGACCGAACACTCGTGCT.............................................................. 24 2 1 101.00 101 101 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGGGCC.............................................................. 23 3 1 101.00 101 101 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCTTGCTT............................................................. 24 2 1 101.00 101 101 0 0 0 0 0
......................................................................................................................TGACTAGACCGAATACTCGTGC............................................................... 22 1 1 100.00 100 89 11 0 0 0 0
.........................................................................................................................CTAGACCGAACACTCGTGCT.............................................................. 20 0 1 98.00 98 87 11 0 0 0 0
......................................................................................................................TTACTAGACCGAACGCTCGTGCT.............................................................. 23 2 1 98.00 98 98 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACATTCGTGAT.............................................................. 23 2 1 96.00 96 96 0 0 0 0 0
......................................................................................................................TGACTTGACCGAACACTCGTGC............................................................... 22 1 1 96.00 96 93 3 0 0 0 0
......................................................................................................................TTACTAAACCGAACACTCGTGCT.............................................................. 23 2 1 95.00 95 94 1 0 0 0 0
......................................................................................................................TGACTAGTCCGAACACTCGTGCT.............................................................. 23 1 1 94.00 94 67 27 0 0 0 0
......................................................................................................................TGACCAGACCGAACACTCGTGC............................................................... 22 1 1 94.00 94 81 13 0 0 0 0
......................................................................................................................TTACTACACCGAACACTCGTGCT.............................................................. 23 2 1 93.00 93 93 0 0 0 0 0
......................................................................................................................TAACTAGACCGAACACTCGTGCTT............................................................. 24 2 1 93.00 93 92 1 0 0 0 0
......................................................................................................................TCACTAGACCGAACACTCGTGCTT............................................................. 24 2 1 92.00 92 92 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACGCGTGCC.............................................................. 23 2 1 92.00 92 90 2 0 0 0 0
......................................................................................................................TTACAAGACCGAACACTCGTGCT.............................................................. 23 2 1 91.00 91 91 0 0 0 0 0
......................................................................................................................TTACTAGACCGACCCCTCGTGCT.............................................................. 23 3 1 91.00 91 91 0 0 0 0 0
......................................................................................................................TGCCTAGACCGAACACTCGTGCTT............................................................. 24 2 1 91.00 91 90 1 0 0 0 0
...................................................................................................................ATCTGACTAGACCGAACACTCGTGCT.............................................................. 26 2 1 91.00 91 90 1 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTTCC.............................................................. 23 3 1 90.00 90 90 0 0 0 0 0
......................................................................................................................TGACTATCCCGACCACTCGTGCT.............................................................. 23 3 1 90.00 90 90 0 0 0 0 0
......................................................................................................................TGACTAGACCGGACACTCGTGC............................................................... 22 1 1 89.00 89 48 41 0 0 0 0
......................................................................................................................TGACTAGCACGAACACTCGTGCT.............................................................. 23 2 1 87.00 87 85 2 0 0 0 0
......................................................................................................................TGACTAGACCGAACACGCGTGC............................................................... 22 1 1 87.00 87 55 32 0 0 0 0
.......................................................................................................................GGCTAGACCGAACACTCGTGCT.............................................................. 22 1 1 85.00 85 85 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACCCGTGC............................................................... 22 1 1 84.00 84 59 25 0 0 0 0
......................................................................................................................TTACTAGACCGGACACTCGTGCT.............................................................. 23 2 1 83.00 83 83 0 0 0 0 0
......................................................................................................................TTACTAGACTGAACACTCGTGCC.............................................................. 23 3 1 82.00 82 82 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACGCTCGTGCC.............................................................. 23 2 1 82.00 82 82 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCCTGCT.............................................................. 23 2 1 82.00 82 81 1 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCGTGCTTT............................................................ 25 2 1 82.00 82 82 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTTGTGCC.............................................................. 23 3 1 81.00 81 81 0 0 0 0 0
......................................................................................................................TTACTAGACCGAACACTCG.................................................................. 19 1 1 81.00 81 81 0 0 0 0 0
......................................................................................................................TGACTAGACCGACCACTCGTTAT.............................................................. 23 3 1 81.00 81 81 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACGCTCGTGC............................................................... 22 1 1 80.00 80 64 16 0 0 0 0
......................................................................................................................TGACTAGACCGACCACTCGTGCTT............................................................. 24 2 1 80.00 80 80 0 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................. 24 2 1 80.00 80 73 7 0 0 0 0
......................................................................................................................TGACTCGACCGAACACTCGTGCT.............................................................. 23 1 1 79.00 79 26 53 0 0 0 0
......................................................................................................................TGACTAGACCGCACACTCGTGT............................................................... 22 2 1 79.00 79 10 69 0 0 0 0
......................................................................................................................TGACTAGACCGAACACTCCTGCC.............................................................. 23 2 1 79.00 79 77 2 0 0 0 0

Anti-sense strand reads

TCACAAAGTGAAAGTCACAAAGTAAAGGTCACAAGCTTTTAATATTTTAAAATTTTAATTTACCGCTAACAGCCATACCAGAGAAAAAGTTGTATATGTGGTTTGTAAGATATATTTCACTGATCTGGCTTGTGAGCACGATATTAAAATTTTACAAGTTGTTAAAGTTAATATTTTAAAGATCACGTACCAAGTTTGAATTT

***********************************************((((((((((((....((((.(((((((.(((((.((((............................)))).))))).)))).))).))))....))))))))))))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo
......................................................................................................................................................TTCACAAGTTGCTAAAGTT.................................. 19 2 4 0.25 1 1 0
.............GGCACAGAGTCAAGGTCACA.......................................................................................................................................................................... 20 3 11 0.09 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:20936737-20936939 - dmo-mir-286 Known_mirbase AG--------------------------------------TGTTTCACT--TTCAGTGTTTCATTTCCAGTGTTCG----------------------AAAATTATAAAA-----------TTTTAAAATTAAATGGCGATTGTCGGTATGGTCTCTTTTTCA-A-C-------AT-ATA--------CACCAAACATTCTATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAATTT-------CA---A--TTATAAAATTTC----TA--------------GTG-CATGGTTCAAACTTAAA
droVir3 scaffold_12875:4112083-4112283 + dvi-mir-286 Known_mirbase AG--------------------------------------TGTTCCAGTATTCCAGTGTTTCAATTC--------------------------------CAATATTCCAG---------TATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTTCA-A-A-------CA-ATATA----CCA-TTA-----TCTATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACGTATATAAAAAGCA----C-AAGTTCTCGAT-TTGATA----------ACCGTCG-C--------AATATATA
droGri2 scaffold_15112:2108782-2108960 - dgr-mir-286-1 Known_mirbase AG--------------------------------------TGTTT-----------------------------------------TGTGTGTG-----TTGCAGTCAAACCCAGCCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTGAA---C-------CT-AAACT----CTA-T-ATACAATATATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACATAGG-------CA----T-CAGTTTTGGTT-----AA--------------ATG--------------AAAA
droWil2 scf2_1100000004514:1651720-1651878 - dwi-mir-286 Known_mirbase GC------A---------------------------------------------------------------------------------ATTGAAA---------TTAC-----------TTTTAAAATTGAATGGCGATTGTCGGTATAGTCTCTTTTTCC-A-AA-AATCTTGTTTGTTTTTGCCAATCTA------ATAAGAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCA-------A-------CAACCAACAAGC----TA--------------GTG------------------
dp5 3:12677547-12677702 - dps-mir-286 Known_mirbase GA------A------------------------AA--------A---------------------------------------------------------GAAGACAAA-----------TTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTAC-C-A-------G---GGTT----CCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGGC-------CA---AC-CAGTGACG---A----AA--------------GTG-ACA-----AAAGTGAAA
droPer2 scaffold_2:8905964-8906119 + dpe-mir-286 Known_mirbase GA------A------------------------AA--------A---------------------------------------------------------GAAGACAAA-----------TTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTAC-C-A-------G---GGTT----CCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGGC-------CA---AC-CAGTGACG---G----AA--------------GTG-ACA-----AAAGTGAAA
droAna3 scaffold_13266:9731329-9731501 + dan-mir-286 Known_mirbase AA------A----------------------------------------------------------------------------TTGTAAGTGATTTTTAGCATCAGAA-----------TTTTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTCA-C-AAAAAAATT---GGTT----ACCAACAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCATCAAGCT-------AA-------AGTGAC-TTGG----AA--------------ATGTA--------AAGTTTCA
droBip1 scf7180000396427:874318-874467 + AG--------------------------------------T----------------------------------------------------GGTTATTAGCATCAGAA-----------TTTTAGAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTTCAC-AAAA----G---GGTT----TCCATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCT-------AA-------AGTG---TTTC----AA--------------AT------------------A
droKik1 scf7180000302679:89345-89522 - AA--------------------------------------AGTAA-------------------------AGTTCCAAAAGTGAAAAGAAACAGCTAATT-----ACCAG-----------TTTTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTGA-A-A-------CC-AGGTT----CCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCATCAAGTT-------AGGGGATAAAGTGCAGTTG--------------------------------------TAAC
droFic1 scf7180000454039:848016-848193 - GA------ATCTTCAAACAAACCAATAATCCAACAAG---TGA---AC-----------------------------------------------T-TAAGGCTCATCAG-----------TTTTAAAATTAAATGGCGATTGTCGGTATAGTCGCTTTTACA-A-A-------C---ATTT----CCTTTCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACAGACA-------AG--------GTGAAGTTAC----CA--------------GTG------------------
droEle1 scf7180000491201:2013953-2014125 - AA------------------------------------------------------------------------------------AGTAAGTGATAATCGGTGCTCCAG---------T-TTTTAAAATTGAATGGCGAATGTCGGTATGGTCGCTTTTTAA-A-A-------T---GGTT----TCGACCAA---------GCGTAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCC-------AA--------GTGATGTTTTT---TA--------------GTG-AAAGAGGCAATCCCCAA
droRho1 scf7180000780066:73604-73787 + GC------TACTTCAACCATATAAATA---C--AATACAA---------------------------------------------AAGTAAGTGATAATTGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTAA-T-A-------C---GGTT----CCGACCAA---------GCTAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAGTTTTCAACTTGCC-------TA--------GTGAAATTAT----TA--------------GTG-A---------------A
droBia1 scf7180000302143:3059779-3059943 - AG--------------------------------------T----------------------------------------------------GAGAA--GGGCCTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------C---GGTG----ACGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATACTCAACAAGCG-------AA--------GTGAAGTTAA----AGGTGCAAGTGGGCC----------ATCAAACT---C
droTak1 scf7180000415384:84022-84178 + A-----------------------------------------------------------------------------------------AGTGATACCAGGCTCTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------C---GATT----ACCATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------TA--------GTGAAGTTA-----AA--------------GTT-A--------AAGTTAAT
droEug1 scf7180000409474:2396815-2396969 + AA------GACTTTAAACTG------------------AA---------------------------------------------AAGTAAGTGATAATTGGCAATCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCGCTTTTTCA-A-A-------C---G------------------------ACTAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATAATCAACAAGCT-------AA--------GTGA---------------------------------------AAGTTAAA
dm3 chr2R:15548889-15549052 - dme-mir-286 Known_mirbase AG--------------------------------------------------------------------------------------TAAGTGATATTGGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-AGAA----A---GGTT----TCGATTAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTAAAGTTGC----GA--------------GTG-A--------AAATTAAA
droSim2 2r:16196160-16196361 - dsi-mir-286 Known_mirbase ATCGTCGCTACTTCAA----ATCAACAATCCAAAAAGCAA---------------------------------------------GAGTAAGTGATATTGGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCC-AAAGAA----A---GGTT----TCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTGAAGTTGC----AA--------------GTG-A--------AACTTCAA
droSec2 scaffold_1:13063618-13063792 - dse-mir-286 Known_mirbase AA------A------------------------AAATCAA---------------------------------------------GAGTAAGTTATATTGGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCC-A-ATAA----A---GGTT----TCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTGAAGTTGC----AA--------------GTG-A--------AACTTCAA
droYak3 2R:13623751-13623898 + dya-mir-286 Known_mirbase ----------------------------------------------------------------------------------------------------GGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------AG-AGGTT----TCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTGAAGTTGC----AA--------------GTG-A---------AATTAAT
droEre2 scaffold_4845:9749148-9749309 - der-mir-286 Known_mirbase AA--------------------------------------TGCA-----------------------------------------GAGTAAGTGTTA-TAGGCACTGCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------GA-AGGTT----TCGATCGA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCA-------CA------CTGTGAAGTTGC----GA--------------GTG------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AG--------------------------------------TGTTTCACT--TTCAGTGTTTCATTTCCAGTGTTCG----------------------AAAATTATAAAA-----------TTTTAAAATTAAATGGCGATTGTCGGTATGGTCTCTTTTTCA-A-C-------AT-ATA--------CACCAAACATTCTATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAATTT-------CA---A--TTATAAAATTTC----TA--------------GTG-CATGGTTCAAACTTAAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................2311201864.00120186419135541225106626611
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................231229220.002292200225002289950
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................221172966.00172966913735201592200
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................24124007.00240070144610225591
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................22110104.0010104026050074990
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................2416588.00658812340063521
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2114274.00427427120035600
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................2313832.003832020038300
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................2413555.00355513610031930
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................2311832.0018320840017480
.......................................................................................................................................GGCGATTGTCGGTATGGTCTCT........................................................................................................................................................................2211086.0010860100010760
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................2311020.001020075009450
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221930.00930358008690
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................221776.00776027017480
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................231494.0049409004850
.......................................................................................................................................GGCGATTGTCGGTATGGTCTCC........................................................................................................................................................................221382.0038200003820
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................191325.0032507003180
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTTC...........................................................................................251277.00277010002670
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................251241.00241072001690
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201237.00237296001390
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCC.............................................................................................221217.0021700002170
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTCT..............................................................................................221170.0017001001690
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................191159.00159047001120
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................241136.00136014001220
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................211136.00136013001230
.......................................................................................................................................GGCGATTGTCGGTATGGTCTC.........................................................................................................................................................................211118.0011804001140
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................211116.0011608001080
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTCC...........................................................................................251103.001030500980
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20198.009801100870
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................24180.00800700730
droVir3
AG--------------------------------------TGTTCCAGTATTCCAGTGTTTCAATTC--------------------------------CAATATTCCAG---------TATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTTCA-A-A-------CA-ATATA----CCA-TTA-----TCTATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACGTATATAAAAAGCA----C-AAGTTCTCGAT-TTGATA----------ACCGTCG-C--------AATATATASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................2312436012.00243601271716461968720113010036335842141414210542562106931859116038191995114939761017122119616719622587918222315371629890114230826462312211078624908047251036028924173063299209540014372398629064112856946104861788420453227931018411169
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22144003.0044003821106656200000000291001000300010000031601927674200524154305922253161255121084079211638541863125013859859203038146600000156176742101366911669614593334379
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................23116543.001654370226013539000000000000000000000000000000104200001526115424918216127315224310749767200014966000002010296300000921933712
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................19115114.00151148802100000000000000000000000000000000310037741456115514601137993208996718768185196005514501218100000710350011012118201610
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................23110567.0010567546501370000000001000000000000000000000010003545904655102284053810405631125703416623503420119647100001435000001971322
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................2217294.0072943307400000000001000000000000000001007812120145833623253742336563540677831123223017820059149800000252313014100310114512076106
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2416460.00646041116800000000012000100010000000000190297813254100092322133002432384542434072401631751591004154871200020281203022009467693336
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................2415195.005195020107500000000000000000010000012001003150003262732244013071643192684752621611791441005631830200013142740002116273357
.......................................................................................................................................GGCGATTGTCGGTATGGTCGCT........................................................................................................................................................................2212134.00213400085000000001700000000000000000060641232585990000201601021142712011100014400000404516200203011853587578
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................2411732.00173201118900000000000001010000000010002502267118100000071038910990721285510048302821000316200000148600422103535391419
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2111460.00146010140294000000000100010020000000442122410148010063942475747575079403038280008618910000612462130433840432824
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................2311130.001130000830000000000000000000000000000405422600002442864502355275231283715010723000000362818700000110224332313
.......................................................................................................................................GGCGATTGTCGGTATGGTCGC.........................................................................................................................................................................211676.00676100240000000000000000000000000000001003000017127105493325512846161911120001630000035112001001016141215
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................221635.0063510060000000000000000000000000000000001000000403544442271287018181616000229000004820000000152526913
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGG..............................................................................................221558.0055847050000000000000000000000000000000000000023425595023513563312246240006330000000101000013230
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................231533.0053300013900000000000000000000000000000000000000127233340163022423721291700026260000000200000000200
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................231409.0040906025700000000000000000000000000000000100000071942931671211000110000010400000030000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................241393.0039300050000000000000000000000000000000010000011516303219532158281729180004400000000200000010021
................................................................................................................................................................................................................GTGACTAGACCGAACACTCGTGCT.............................................................................................241315.0031500070000000000000000000000000000000002000004962182183683064360009000000118000000128763
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAG.............................................................................................231151.001510006000000000000000000000000000000000000614899152257217678000250000000200000000100
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201145.00145000120100000001000000010000000000020200000006243394620110009440000003800002075313
......................................................................................................................................TGGCGATTGTCGGTATGGTCGC.........................................................................................................................................................................221141.00141000400000000000000000000000000000000010000018766101661842640001050000011500000021431
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221126.001261013100000000000000000000000000000000100000076624163123200031200000102000001171534
.................................................................................................................................................................................................................TGACTAGACCGAACACTC..................................................................................................181110.00110000300000000000000000000000000000000000001116811931241341640001200000000200000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................241105.001050001300000000000000000000000000001000000000078443123133752000740000010100000020311
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAA.............................................................................................23187.008700040000000000000000000000000000000110000019373413331164000100000000600000134710
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTA.............................................................................................23170.007000017000000000000000000000000000010013000000332333231020000290000010300000024110
.................................................................................................................................................................................................................TGACTAGACCGAACACT...................................................................................................17167.0067000000000000000000000000000000000000000000131100212002001000000001121000000201153
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21154.005400022000000000100000000000000000000001000000011015132111000660000001000000000000
.......................................................................................................................................GGCGATTGTCGGTATGGTCG..........................................................................................................................................................................20153.005300010000000001000000000000000000000000000000000000000000000600000318000000306123
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTG.............................................................................................23145.00450001000000000000000000000000000000001000010111445352223000010000000300000011300
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTTT..............................................................................................22142.00420003000000000000000000000000000000000000001116046252020000330000000100000001010
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................25136.00360006000000000000000000000000000000058400000110202011000000032000000000000000000
.......................................................................................................................................GGCGATTGTCGGTATGGTCGCC........................................................................................................................................................................22135.003500033000000000000000000000000000000000000000100000000000000000000000100000000000
......................................................................................................................................TGGCGATTGTCGGTATGGTCGCT........................................................................................................................................................................23131.00310001000000000000000000000000000000101500001111011000000000000000040400000012132
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTGT............................................................................................24128.00280002000000000000000000000000000000000000000120141040421000220000000000000000101
................................................................................................................................................................................................................GTGACTAGACCGAACACTCGTGC..............................................................................................23128.00280007000000000000000000000000000000000000000040001000000000000000003500000031112
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20126.00260002000000000000000000000000000000000000000220036041002100120000000000000000000
droGri2
AG--------------------------------------TGTTT-----------------------------------------TGTGTGTG-----TTGCAGTCAAACCCAGCCAGTATTTTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTGAA---C-------CT-AAACT----CTA-T-ATACAATATATATAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACATAGG-------CA----T-CAGTTTTGGTT-----AA--------------ATG--------------AAAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................23219.0038533
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................2221.50321
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2121.00220
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................2320.50101
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................2220.50110
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2420.50101
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................2020.50101
droWil2
GC------A---------------------------------------------------------------------------------ATTGAAA---------TTAC-----------TTTTAAAATTGAATGGCGATTGTCGGTATAGTCTCTTTTTCC-A-AA-AATCTTGTTTGTTTTTGCCAATCTA------ATAAGAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCA-------A-------CAACCAACAAGC----TA--------------GTG------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................231463839.00463839674107864596932388
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22146657.0046657142175046072268
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................2215681.0056818100564617
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2415244.0052444211520414
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2115172.00517221320510118
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................2411257.001257016012392
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................231683.0068376106006
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201590.005901015799
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................231568.005680705592
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221367.0036719202731
.......................................................................................................................................GGCGATTGTCGGTATAGTCTCT........................................................................................................................................................................221292.002920002911
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTA.............................................................................................231143.001430001430
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................231114.001142200920
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................241100.00100110980
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................22196.0096110940
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTCT..............................................................................................22192.0092000920
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGT................................................................................................22187.0087000870
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21172.0072030690
.......................................................................................................................................GGCGATTGTCGGTATAGTCTC.........................................................................................................................................................................21172.0072000720
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGTG...............................................................................................23153.0053010520
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................25152.0052000520
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................21137.00370140230
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................24137.0037010360
......................................................................................................................................................................................................................AGACCGAACACTCGTGCT.............................................................................................18128.0028000271
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCAT............................................................................................24126.0026010250
....................................................................................................................................AATGGCGATTGTCGGTATAGTC...........................................................................................................................................................................22124.0024000240
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................19123.0023000221
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................19122.0022410170
.........................................................................................................................................CGATTGTCGGTATAGTCTCTTT......................................................................................................................................................................22120.0020000200
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20119.0019000190
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................23118.0018000180
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGG..............................................................................................22117.0017100070
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCTA............................................................................................23117.0017030140
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCTT............................................................................................23115.0015030120
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTC...............................................................................................21114.0014000140
.................................................................................................................................................................................................................TGACTAGACCGAACACTCTGC...............................................................................................21113.0013000130
....................................................................................................................................AATGGCGATTGTCGGTATAGT............................................................................................................................................................................21111.0011000110
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................24111.0011000110
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGC..............................................................................................20110.001001090
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTT...............................................................................................21110.0010000100
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGC..............................................................................................1919.00901080
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTAT..............................................................................................2218.00800080
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTG.............................................................................................2318.00800080
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTTT..............................................................................................2218.00800080
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCG.................................................................................................2117.00700070
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCGT............................................................................................2416.00600060
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGCCT..............................................................................................2216.00600060
.................................................................................................................................................................................................................TGACTAGACCGAACACTC..................................................................................................1815.00503020
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGC..............................................................................................1815.00501040
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGT..............................................................................................2115.00502030
................................................................................................................................................................................................................GTGACTAGACCGAACACTCGTGCT.............................................................................................2415.00502030
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTG...............................................................................................2014.00402020
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTAT............................................................................................2414.00400040
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCC............................................................................................2414.00420020
................................................................................................................................................................................................................GTGACTAGACCGAACACTCGTG...............................................................................................2214.00401030
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGTGA..............................................................................................2414.00400040
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGTT...............................................................................................2314.00400040
.......................................................................................................................................GGCGATTGTCGGTATAGTCTCTT.......................................................................................................................................................................2314.00400040
..............................................................................................................................................................................................................AAGTGACTAGACCGAACACTCGT................................................................................................2314.00400040
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGGCT..............................................................................................2214.00400040
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTA...............................................................................................2113.00300030
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAA.............................................................................................2313.00300030
dp5
GA------A------------------------AA--------A---------------------------------------------------------GAAGACAAA-----------TTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTAC-C-A-------G---GGTT----CCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGGC-------CA---AC-CAGTGACG---A----AA--------------GTG-ACA-----AAAGTGAAASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................231197384.00197384133833115522589773971221015
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22199256.009925622251671405629785011218
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................23129723.00297230172935012922700000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................21113749.00137490106060060667701050
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................2214474.00447408615280285900001
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2412419.0024190801631670100010
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201946.00946028163075401000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................231781.00781007801000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................221425.0042501032109400000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221385.0038503113703700000
.......................................................................................................................................GGCGATTGTCGGTTTGGTCGCT........................................................................................................................................................................221347.0034701626306800000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................231324.0032402122118100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................231287.002870119868200000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................241287.002870325412801000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................241273.00273013152010800000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................211239.0023902042001500000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................191206.002060615414500000
.......................................................................................................................................GGCGATTGTCGGTTTGGTCGC.........................................................................................................................................................................211163.001637211902504060
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................231124.001240110901400000
.......................................................................................................................................GGCGATTGTCGGTTTGGTCGCC........................................................................................................................................................................221106.00106001050100000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTG...............................................................................................20193.009308820300000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGG..............................................................................................22145.004502803500000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTC...............................................................................................21142.004200360600000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21138.0038091701200000
.............................................................................................................................................................TTTTAC-C-A-------G---GGTT----CCGATCAA---------GCGAAG....................................................................................................................27134.003400300400000
.......................................................................................................................................GGCGATTGTCGGTTTGGTCG..........................................................................................................................................................................20131.003113901215000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGC................................................................................................20129.002900260300000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTA...............................................................................................21129.002900200900000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGC..............................................................................................20121.002109201000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTA.............................................................................................23120.0020001001000000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGC..............................................................................................18120.002002101700000
droPer2
GA------A------------------------AA--------A---------------------------------------------------------GAAGACAAA-----------TTTTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTAC-C-A-------G---GGTT----CCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAATGTTCAACATGGC-------CA---AC-CAGTGACG---G----AA--------------GTG-ACA-----AAAGTGAAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................231112653.0011265392737218192824220192
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22137199.0037199307858362931316
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................2317731.0077317692038010
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2116311.00631149963412270486
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................2313635.0036353609024020
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGG..............................................................................................2212076.002076206907000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................2211969.00196913842583000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................241665.006655104143080
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................191653.0065364417010
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201533.005333821146031
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................221378.00378363213000
.......................................................................................................................................GGCGATTGTCGGTTTGGTCGC.........................................................................................................................................................................211160.00160134040022
.......................................................................................................................................GGCGATTGTCGGTTTGGTCGCT........................................................................................................................................................................221109.0010998011000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................22194.009461248010
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................23187.00878601000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................24186.008669017000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................23182.008254025030
.................................................................................................................................................................................................................TGACTAGACCGAACACTC..................................................................................................18165.00656500000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................24146.00464204000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGG................................................................................................20141.00414100000
.......................................................................................................................................GGCGATTGTCGGTTTGGTCG..........................................................................................................................................................................20135.00353003002
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21133.00332229000
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20124.00242301000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................21123.00231364000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................24119.00191306000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................19113.0013508000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAA.............................................................................................23112.00121200000
.......................................................................................................................................GGCGATTGTCGGTTTGGTCGCC........................................................................................................................................................................22110.00101000000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGC..............................................................................................1819.009009000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGC..............................................................................................2018.008602000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTG...............................................................................................2018.008431000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTA...............................................................................................2118.008602000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTA.............................................................................................2317.007403000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCG............................................................................................2416.006600000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGC................................................................................................2016.006600000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCC.............................................................................................2215.005500000
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGC..............................................................................................1915.005302000
......................................................................................................................................................................................................................AGACCGAACACTCGTGCT.............................................................................................1814.004301000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCT.................................................................................................1914.004400000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTC...............................................................................................2114.004103000
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGTG...............................................................................................2313.003012000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGGG.............................................................................................2313.003300000
.......................................................................................................................................GGCGATTGTCGGTTTGGTC...........................................................................................................................................................................1913.003200001
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCG.............................................................................................2213.003300000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCC............................................................................................2413.003300000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................2413.003300000
droAna3
AA------A----------------------------------------------------------------------------TTGTAAGTGATTTTTAGCATCAGAA-----------TTTTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTCA-C-AAAAAAATT---GGTT----ACCAACAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCATCAAGCT-------AA-------AGTGAC-TTGG----AA--------------ATGTA--------AAGTTTCASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................23141249.004124961228095121135643330
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................2317839.0078391780729002
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................2214133.0041336732298071326
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................241568.0056819431111214
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................211376.003762225189509
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................231134.0013401340000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................22170.007003633001
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................20170.007012336055
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................22170.007049147000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................23167.006704621000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................24160.00601509000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................24145.00452358000
.......................................................................................................................................GGCGATTGTCGGTATGGTCGCT........................................................................................................................................................................22138.00381343000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................19133.00331311000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21132.00324197002
.......................................................................................................................................GGCGATTGTCGGTATGGTCGC.........................................................................................................................................................................21128.00281260001
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................22122.00220201001
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................23122.00220165100
.......................................................................................................................................GGCGATTGTCGGTATGGTCGCC........................................................................................................................................................................22117.00170170000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................21115.00151131000
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20111.0011065000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................2318.008062000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTCT..............................................................................................2217.007070000
.................................................................................................................................................................................................................TGACTAGACCGAACACTC..................................................................................................1816.006051000
......................................................................................................................................TGGCGATTGTCGGTATGGTCGC.........................................................................................................................................................................2215.005041000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................2515.005014000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................1915.005050000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGC..............................................................................................1815.005041000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTG...............................................................................................2014.004310000
.............................................................................................................................................................TTTTCA-C-AAAAAAATT---GGTT----ACCAAC.....................................................................................................................................2614.004040000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCC.............................................................................................2214.004040000
.............................................................................................................................................................TTTTCA-C-AAAAAAATT---GGTT----ACCA.......................................................................................................................................2414.004040000
.............................................................................................................................................................TTTTCA-C-AAAAAAATT---GGTT----ACC........................................................................................................................................2314.004040000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGGC.............................................................................................2314.004040000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTT...............................................................................................2114.004002011
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCC.............................................................................................2114.004040000
droBip1
AG--------------------------------------T----------------------------------------------------GGTTATTAGCATCAGAA-----------TTTTAGAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTTCAC-AAAA----G---GGTT----TCCATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCT-------AA-------AGTG---TTTC----AA--------------AT------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
AA--------------------------------------AGTAA-------------------------AGTTCCAAAAGTGAAAAGAAACAGCTAATT-----ACCAG-----------TTTTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTGA-A-A-------CC-AGGTT----CCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCATCAAGTT-------AGGGGATAAAGTGCAGTTG--------------------------------------TAACSizeHit CountTotal NormTotal
No Reads
droFic1
GA------ATCTTCAAACAAACCAATAATCCAACAAG---TGA---AC-----------------------------------------------T-TAAGGCTCATCAG-----------TTTTAAAATTAAATGGCGATTGTCGGTATAGTCGCTTTTACA-A-A-------C---ATTT----CCTTTCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACAGACA-------AG--------GTGAAGTTAC----CA--------------GTG------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AA------------------------------------------------------------------------------------AGTAAGTGATAATCGGTGCTCCAG---------T-TTTTAAAATTGAATGGCGAATGTCGGTATGGTCGCTTTTTAA-A-A-------T---GGTT----TCGACCAA---------GCGTAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATGTTCAACAAGCC-------AA--------GTGATGTTTTT---TA--------------GTG-AAAGAGGCAATCCCCAASizeHit CountTotal NormTotal
No Reads
droRho1
GC------TACTTCAACCATATAAATA---C--AATACAA---------------------------------------------AAGTAAGTGATAATTGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTAA-T-A-------C---GGTT----CCGACCAA---------GCTAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAGTTTTCAACTTGCC-------TA--------GTGAAATTAT----TA--------------GTG-A---------------ASizeHit CountTotal NormTotal
No Reads
droBia1
AG--------------------------------------T----------------------------------------------------GAGAA--GGGCCTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------C---GGTG----ACGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATACTCAACAAGCG-------AA--------GTGAAGTTAA----AGGTGCAAGTGGGCC----------ATCAAACT---CSizeHit CountTotal NormTotal
No Reads
droTak1
A-----------------------------------------------------------------------------------------AGTGATACCAGGCTCTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------C---GATT----ACCATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------TA--------GTGAAGTTA-----AA--------------GTT-A--------AAGTTAATSizeHit CountTotal NormTotal
No Reads
droEug1
AA------GACTTTAAACTG------------------AA---------------------------------------------AAGTAAGTGATAATTGGCAATCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCGCTTTTTCA-A-A-------C---G------------------------ACTAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATAATCAACAAGCT-------AA--------GTGA---------------------------------------AAGTTAAASizeHit CountTotal NormTotal
No Reads
dm3
AG--------------------------------------------------------------------------------------TAAGTGATATTGGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-AGAA----A---GGTT----TCGATTAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTAAAGTTGC----GA--------------GTG-A--------AAATTAAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................231525385.0052538500001844492491179644580310000000150094021181100107123122121319641123116271130002830000000000000000005431528573130591871321553705829104251310212210513823417245933700554163110617284194130431747304473416410201311974721110000025110098522175144797567043979747361422316330970102650415035101026004113118241811147801225711590005072102102163170000003013724244844828281448487482623146306000009401128001087726728710417412145254925398772141225101851011117538195281574923038250128161353514111720659313929815573919202151438155920102739133268554211331714564181459243861062591524831801441731980
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCT........................................................................................................................................................................22145803.00458030000402895253516000000000000000000000000300000000000000000100000000000000000000000101001034815757615729812144401600421422010331029142114211860260073055191024000000000000100000000000821058116736470100010000000000000100020200000100000000000000000000000805000200000000000010011170110010000073640000000000000000010001000000210000000402000000110132524201400000000000120011000100000001120200000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22124186.00241860000011391136811100000000001001000000005101021032032000072100080000000000000000000000004322323887804500116400111249610618631623104540229093013000212000000000000100167215993818229020524100041644630005000901600003202001200051012120300010000801113000000100651166972611652730641412190000101512350132129120205601381851042161310029210313420221015011525132512316541150020200006031210912053023942225444886747254531310
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2118414.0084140000001314120000000000000000000000003493000000010111000110000010000000000000000000000003935381311100001202100311820001040006751016001000000010000000000000270331549243927000140000000000000101000001001000100001021000000000000000500000000000101116100421220002000024833800100001002000031601000110200130202701211028010413111162952010300113202001110100702014013112911102143130
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2415866.0058660000003201770000000000000000000000000000000000400100000000000000000000000000000000034318415528240000210001013302600301411000149342340100001010001000000000001263267255063040001000000000000000000010010010100000010120010000000000000100000000000011112056020300200001052070010001010400000110000000101021021221116132100030102035247004000010010031004042112300001259150112270
.......................................................................................................................................GGCGAATGTCGGTATGGTCT..........................................................................................................................................................................2015774.0057740000000410000000000000000000000000540200000000000000000000000000000000000000000000006012270000000010000000000001000400000000000000000000000000017191464000000040000000000000000000000000000000000000000000000000000000000000000000000000000000003400000000000000000000000000000000000000000000000002303200000000100000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................2014804.004804000000000000000000000000000000000025930000001003000000000000000000000000000000000000517200000100000010000000000000120000000000000000000000000010157119889250000000000000040610000000000000000000020100000000000000002100200000000030500070300000000809200100100000001021000000000000600026010103010010021937465501011000010000018219130124034160721141421150
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................2313154.00315400000015513810000000000000000000000000000000000000000000000000000000000000000000000002491499814136003002000001001700009170008112043000000001000000000000000961593422562200000000000000000000000000000000000000000200000000000000000000000000000000001036110000000003568000000000020000250000000000000000201150300000000110517700000000000101000100000010000001040001020
.......................................................................................................................................GGCGAATGTCGGTATGGTCTC.........................................................................................................................................................................2112028.00202800000069220000000000000000000000001000000010000000000000000000000000000000000000016027216720200000200000000000200273300028103000000000100000000000000013789732410000000000000000000000000000000000000000000000000000020000000000000010000000010200000000138000000000000000000000010000000000000100000000000111192400600001000000000000000000010000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................2411874.0018740000006192100000000000000010000000000200000000000000000004000000000000000000000000152111487625000002002000000000008700059502700000000000000000000000057151359108181000020030000000000000000000000000000000000000000000000000000000000000000131317321620001100305200000000000000021000000000000101110415040000000103812000000000000000000010000010000000150001000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................2511018.0010180000002102000000000000000000000000000000000000000000000000000000000000000000000000926825491600000000100000000000010003100400000000000000000000000014356519200000100000000000000000000000000000000000200000000000000002000000000000000403070023100010002419000000000000000000000000000000000000010000000000038433000020000000000000000000000000000120000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................231501.005010000101478517000000000000000000000000001000000000000000000000000000000000000000000003877108001000000000100100001400082032001000000000000000000000317423740000000000000010000000100000000000100000000000000000000000000000000000000000008011001000069000000000000000000000000000000002200001600000100073900000000000000000000000001000000000001000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................191419.0041900000000000000000000000000000000001650100000000000000000002000000000000000000000000500000000000010000100000020000410700000000000000000000000011715120300000000000000000000000000000000000000000000000000000000000000000030000001000300000000008220000000000000000100000000000000000020000000000000845410000000000000000100000000000100100000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................231390.00390000010299100000000000000000000000000000000000000000000000000000000000000000000000101212170000000000000000000054000261031000000000000000000000000926397840000000000000000000000000000000000100000020000000000000000000000000000000000000010000000036000000000010000010001000000000000000000000000000065200000000000000000000000000000000010000100
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221359.003590000001420000000000000000000000000000000000000000000000000000000000000000000000003125162010000000000000000000000000170090010000000000000000000003818160000000000000000000000230000000100000000006000000000000000000000000000000000000210800000000470000000000000000200000000000000000000300000000000121900000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................221268.0026800000002340000000000000000000000000000000000000000000000000000000000000000000000074131300000010000011000000000000720000000000000000000000000011317304100000000000000000000010000000000010000000000000000000000000000000000000000000303000100001390000000000100001700001000000000000010000000000000741400000000000000000000000020000100800011100
.............................................................................................................................................................TTTTCA-A-AGAA----A---GGTT----TCGATTAA---------GCG.......................................................................................................................271195.0019500000000000000000000000000000000000000000000000000000000000000000000000000000000080500000000000000000000000000000000000000000000000000000000436010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000110000000000000000000000000000000000000000000000000163200000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................241188.00188000000020000000000000000000000000000000000000000000000000000000000000000000000000121183020000000000000000000001000100000000000000000000000000006824900000000000000000000000000000000000000000002000000000000000000000000000000010001010000000026000000000000000000000000000000000001000000010000043600000000000000000001000000000000000000000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................211160.0016000000000100000000000000000000000000000000000000000000000000000000000000000000000090372000000000000200000000000021030000000000000000000000005491000000000000000000000000000000000000000000100000000000000000000000000000001000000300000000670000000000000000300000000000000002000000000000000701600000000000000000000000000000000020000000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................191141.00141000000000000000000000000000000000000000000000000000000000000000000000000000000000130161000000000010012010000000000400000000000000000000000000031620800000000000000000000000000000100000000000000000000000000100000000000000000000000000000000055000000000000000000000000000000000000000000000000033100000000000000000000000000000000000000000
.....................................................................................................................................ATGGCGAATGTCGGTATGGTC...........................................................................................................................................................................211125.001250000000000000000000000000000000000000000000000000000000000000000000000000000000006032000000000000000000000000000000000000000000000000000000152840000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000080900000000000000000000000000000000020000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCC........................................................................................................................................................................221123.00123000000461100000000000000000000000000000000000000000000000000000000000000000000000309032000000100000000000000140000002000000000000000000000000014600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000029000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................201121.001210000000110000000000000000000000000200000000000000000000000000000000000000000000001128410000000000000010000000000400300000000000000000000000011591170000000000000000000000000000000000000000000000000000000000000000000000000000001000000000036000000000000000000000000000000000000000000000000026400000000000000000000000000000000000000000
.......................................................................................................................................GGCGAATGTCGGTATGGTC...........................................................................................................................................................................191113.001130000000000000000000000000000000000240000000000000000000000000000000000000000000000300020000000000000000000000000000000000000000000000000000040157000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000019200000000000000000000000000000000000000000
......................................................................................................................................................................................................................AGACCGAACACTCGTGCT.............................................................................................18197.00970000000000000000000000000000000000000000000001000000000000000000000000000000000001034110000000000014110000000000010000000000000000000000000081025010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000200000000000000016200000000000000000000000000000000000000000
.......................................................................................................................................GGCGAATGTCGGTATGGT............................................................................................................................................................................18193.009300000000000000000000000000000000000000000000000000000000000000000000000000000000050001000000000000000000000000010000000000000000000000000001752000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000059100000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTATC..........................................................................................26190.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004346000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................22180.0080000000111117000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000001000000000000000000000000000213500000000000000000000000000000000000000000000000000000000000000000000000000000001010000000053000000000000000000000000000000000000000000000000021200000000000000000000010000000000000000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCTT.......................................................................................................................................................................23176.0076000000000000000000000000000000000000000000000000000000000000000000000000000000000118161160000000000000001000002000100100000000000000000000000005400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000
......................................................................................................................................TGGCGAATGTCGGTATGGTCTCT........................................................................................................................................................................23165.006500000001000000000000000000000000000000000000000000000000000000000000000000000000016001600000000000000000000800000006000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000023100000000000000000000000000000000000000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCA........................................................................................................................................................................22157.005700000061011000000000000000000000000000000000000000000000000000000000000000000000001910020000000000000004000005000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCTA.......................................................................................................................................................................23156.005600000001000000000000000000000000000000000000000000000000000000000000000000000000075001100000000000000000000400000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027000000000000000000000000000000000000000000
.............................................................................................................................................................TTTTCA-A-AGAA----A---GGTT----TCGATTAA---------G.........................................................................................................................25155.00550000000000000000000000000000000000100000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000223001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000035600000000000000000000000000000000000000000
........................................................................................................................................GCGAATGTCGGTATGGTCTCT........................................................................................................................................................................21154.005400000002000000000000000000000000000000000000000000000000000000000000000000000000080101100000000000010000000040001006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTC..................................................................................................18146.00460000000000000000000000000000000000000000000010000000000000000000000000000000000007010000000000000000000000000001004000000000000000020000000111001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000000000000000000091300000000000000000000000000000000000000000
.........................................................................................................................................CGAATGTCGGTATGGTCTCT........................................................................................................................................................................20141.0041000000100000000000000000000000000020000000000000000000000000000000000000000000000620170000000000000000000014000100300000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000
.............................................................................................................................................................TTTTCA-A-AGAA----A---GGTT----TCGATTAA---------GCGA......................................................................................................................28135.00350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000075500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
......................................................................................................................................TGGCGAATGTCGGTATGGTCTC.........................................................................................................................................................................22135.00350000000000000000000000000000000000000000000000000000000000000000000000000000000001081000000000000010000000000000004000000000000000000000000001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................23134.00340000002000000000000000000000000000000000000000000000000000000000000000000000000002113000000100000000000000000000001000000000000000000000000102300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000014100000000000000000000000000000000100000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCG........................................................................................................................................................................22134.003400000003000000000000000000000000000000000000000000000000000000000000000000000000010011200000000000000010000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................24134.0034000000010000000000000000000000000020000000000000000000000000000000000000000000000901000000000000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005100000000000000000000000000000000000000000001000006200000000000000000000000000000000000000000
.............................................................................................................................................................TTTTCA-A-AGAA----A---GGTT----TCGATTAA---------GC........................................................................................................................26132.00320000000000000000000000000000000000000000000000000010000000000000000000000000000000051000000000000000000000000000000000000000000000000000000039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAA...........................................................................................25129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000203100000000000000000000002000100000000000000000000000000001200100000000000000000000000000000000000000000000000000000000000000000000000001000904000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................GAATGTCGGTATGGTCTCT........................................................................................................................................................................19127.00270000000000000000000000000000000000100000000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000155000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGTG...............................................................................................23127.0027000000030200000000000000000000000000000000000000000000000000000000000000000000000221700000000000000000000000000320000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCTC.......................................................................................................................................................................23125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000005080000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
ATCGTCGCTACTTCAA----ATCAACAATCCAAAAAGCAA---------------------------------------------GAGTAAGTGATATTGGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCC-AAAGAA----A---GGTT----TCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTGAAGTTGC----AA--------------GTG-A--------AACTTCAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................2311382795.001382795251910879609732122304085121213235111035311169942314100
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................231113758.001137583351081128210003113785026800000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22169704.00697042838646695171922272860658882781634000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................23154047.00540478652537391002160016000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................1914915.0049151994845135008191500000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2414724.0047241210225250015101138742053901000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2114456.004456281325101132410844582143900000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGG..............................................................................................2213354.00335495333800000000200000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................2412731.00273141978000211386276119000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................2311653.00165341164700000000100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................2511566.00156611701006065875207700000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................2211150.0011508278700000119033102000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCT........................................................................................................................................................................221976.009761147610014324822201000000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221722.0072211557150010343407900000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201603.00603813100315511057817501000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................231478.004781132200063635902300000
.............................................................................................................................................................TTTTCC-AAAGAA----A---GGTT----TCGATCA....................................................................................................................................241299.002990029010000340100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTC..................................................................................................181266.00266002070325008230000000
.............................................................................................................................................................TTTTCC-AAAGAA----A---GGTT----TCGATCAA---------G.........................................................................................................................261171.001710016000000370100000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................211170.001700010100000251403000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................241137.00137017700010191502400000
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................201124.00124007300000201201900000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................221121.001218285000116501300000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................19196.0096002500010191603500000
......................................................................................................................................................................................................................AGACCGAACACTCGTGCT.............................................................................................18181.008110370000019143700000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................24174.0074006400000350200000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCC.............................................................................................22167.0067006700000000000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTC.........................................................................................................................................................................21159.00590029001201590300000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCC........................................................................................................................................................................22158.0058005800000000000000
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGTG...............................................................................................23149.004900130000021150000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTCT..............................................................................................22145.00451060000024140000000
................................................................................................................................................................................................................GTGACTAGACCGAACACTCGTGCT.............................................................................................24145.0045004100000200200000
.............................................................................................................................................................TTTTCC-AAAGAA----A---GGTT----TCGATCAA---------GCG.......................................................................................................................28137.0037003000010510000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTG.............................................................................................23136.00360020000000001600000
.............................................................................................................................................................TTTTCC-AAAGAA----A---GGTT----TCGAT......................................................................................................................................22136.0036003300000110100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGG................................................................................................20136.0036003600000000000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................24135.0035003000000110300000
.................................................................................................................................................................................................................TGACTAGACCGAACACT...................................................................................................17134.0034000000108250000000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................21133.0033002400000410400000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCG.............................................................................................22132.0032003200000000000000
.....................................................................................................................................ATGGCGAATGTCGGTATGGTC...........................................................................................................................................................................21129.00290015000000101300000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................23127.0027002400000000300000
........................................................................................................................................................................................................................ACCGAACACTCGTGCT.............................................................................................16127.0027000000001980000000
.................................................................................................................................................................................................................TGACTAGACCGAACAC....................................................................................................16125.00250000000010150000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCT..........................................................................................................................................................................20115.001500900010220100000
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGT................................................................................................22115.0015001000000000500000
droSec2
AA------A------------------------AAATCAA---------------------------------------------GAGTAAGTTATATTGGGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCC-A-ATAA----A---GGTT----TCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTGAAGTTGC----AA--------------GTG-A--------AACTTCAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................231271567.002715671362212640486136
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22110716.001071666310498149
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2412288.00228873225523
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................2111158.001158102112818
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................231482.004824046612
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................221440.00440114326
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................241333.00333603189
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221204.002041030992
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................251192.00192201873
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201140.00140221333
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................23188.008841785
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21173.007340681
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................23152.005210510
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................24148.004800471
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTCT..............................................................................................22145.004540392
.............................................................................................................................................................TTTTCC-A-ATAA----A---GGTT----TCGATCAA---------GCG.......................................................................................................................27134.003420311
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCT........................................................................................................................................................................22132.003250270
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................22122.002202182
......................................................................................................................................................................................................................AGACCGAACACTCGTGCT.............................................................................................18121.002100210
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20121.002110200
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................19120.002010190
.............................................................................................................................................................TTTTCC-A-ATAA----A---GGTT----TCGATCAA---------GC........................................................................................................................26118.001800180
.................................................................................................................................................................................................................TGACTAGACCGAACACTC..................................................................................................18116.001630130
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................19116.001610150
.............................................................................................................................................................TTTTCC-A-ATAA----A---GGTT----TCGATCAA---------G.........................................................................................................................25112.001200120
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGT................................................................................................2219.0090090
.....................................................................................................................................ATGGCGAATGTCGGTATGGTC...........................................................................................................................................................................2119.0090081
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................2419.0091080
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................2117.0072050
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTA.............................................................................................2316.0060060
.................................................................................................................................................................................................................TGACTAGACCGAACACTCTCT...............................................................................................2116.0061041
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................2315.0050050
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGGCT..............................................................................................2214.0040040
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTT...............................................................................................2113.0030030
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGCCT..............................................................................................2213.0030030
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................2413.0030030
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCAT............................................................................................2413.0030021
.......................................................................................................................................GGCGAATGTCGGTATGGTCT..........................................................................................................................................................................2013.0030030
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAA...........................................................................................2513.0030030
...............................................................................................................................................................................................................AGTGACTAGACCGAACACTCGTG...............................................................................................2313.0030030
.............................................................................................................................................................TTTTCC-A-ATAA----A---GGTT----TCGATCAA---------GCGA......................................................................................................................2812.0020020
.............................................................................................................................................................TTTTCC-A-ATAA----A---GGTT----TCGATCA....................................................................................................................................2312.0020020
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCTT............................................................................................2212.0020020
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCTT............................................................................................2312.0020020
droYak3
----------------------------------------------------------------------------------------------------GGCACTCCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------AG-AGGTT----TCGATCAA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCT-------CA--------GTGAAGTTGC----AA--------------GTG-A---------AATTAATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................2311113308.00111330841019110027701097537210740010
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................231264917.002649177702646062340000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................22156464.005646457125223441544300000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................24112894.001289441122915941300000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................2314780.00478010477630000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCT........................................................................................................................................................................2212118.002118212088270000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................2311773.0017731501702541100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................2411451.001451001425250100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................2211083.001083107882940000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................211892.00892336732111100000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCC........................................................................................................................................................................221709.007090070900000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................241530.0053010464650000000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221468.0046809416420100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................231213.002130021210000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................221203.002030019580000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................191195.001954018920000000
.......................................................................................................................................GGCGAATGTCGGTATGGTCTC.........................................................................................................................................................................211169.001690016540000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................231168.0016802146191000000
................................................................................................................................................................................................................GTGACTAGACCGAACACTCGTGCT.............................................................................................241136.001360013420000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201118.001181087300000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTCT..............................................................................................221115.001150011500000000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCC.............................................................................................22195.0095009500000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................24177.0077007160000000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................19175.00750059150100000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21168.00680047201000000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................25157.00570128270100000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGGC.............................................................................................23155.0055005500000000
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20154.0054004860000000
droEre2
AA--------------------------------------TGCA-----------------------------------------GAGTAAGTGTTA-TAGGCACTGCAG-----------TTTTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCA-A-A-------GA-AGGTT----TCGATCGA---------GCGAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAATATTCAACATGCA-------CA------CTGTGAAGTTGC----GA--------------GTG------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCT.............................................................................................231107629.001076293537544691495304817
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCC.............................................................................................23110737.001073719105590158010
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGC..............................................................................................2219280.0092801836142029420130
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTT............................................................................................2411090.001090457390302130
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTG...............................................................................................211930.00930534500427000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGCT.............................................................................................221335.0033528225028000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGT..............................................................................................221287.002872750210000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGAC.............................................................................................231157.00157015700000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCG.............................................................................................231150.00150067083000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGT................................................................................................201142.001421230116020
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCT........................................................................................................................................................................22193.0093206409000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTA............................................................................................24185.00851351021000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTC............................................................................................24183.0083161021000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGCT.............................................................................................21154.0054926019000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGA..............................................................................................22137.0037126010000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCA.............................................................................................23131.0031216011020
.......................................................................................................................................GGCGAATGTCGGTATGGTCTCC........................................................................................................................................................................22125.002502500000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCG.................................................................................................19124.002401806000
....................................................................................................................................................................................................................CTAGACCGAACACTCGTGCT.............................................................................................20120.00207508000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGTC.............................................................................................23117.001701403000
.....................................................................................................................................................................................................................TAGACCGAACACTCGTGCT.............................................................................................19116.001621013000
..................................................................................................................................................................................................................GACTAGACCGAACACTCGTGC..............................................................................................21114.00149401000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTAT...........................................................................................25112.00121209000
...................................................................................................................................................................................................................ACTAGACCGAACACTCGTGC..............................................................................................20111.00113305000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTCT..............................................................................................2219.0093600000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCTG............................................................................................2419.0095202000
.................................................................................................................................................................................................................TGACTAGACCGAACACTCGTGCCT............................................................................................2417.0070304000

Generated: 10/20/2015 at 07:36 PM