dmo-mir-274

Antisense to intron [Dmoj\GI11583-in]; utr5 [utr5_plus_7681]; pre_miRNA [Dmoj\mir-274-RM]; miRNA [Dmoj\miR-274-RA]

TACACATATATGTTTAGTGAATCTGTTGTCAAGTGTATCCTGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGAGGCATCTCGTATTCGCTGTTTTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAACGCAACGAAAATGAAAAGTGCATTCCCAAGGAGAGGGCG ***************************************.(((((((((((((((((((((.((.((..((((((((..(((((((...((....)).)))))))))))))))..)))).)))))))..))))))))))))))..**************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head	M046 female body	V110 male body	M060 embryo	V041 embryo
........................................................TTTGTGACCGACACTAACGGGT.............................................................................................................	22	0	1	148678.00	148678	66752	55166	22084	4671	1	4
........................................................TTTGTGACCGACACTAACGGGTA............................................................................................................	23	0	1	22904.00	22904	3601	2752	16301	250	0	0
........................................................TTTGTGACCGACACTAACGGG..............................................................................................................	21	0	1	5428.00	5428	1029	834	3535	30	0	0
........................................................TTTGTGACCGACACTAACGGGA.............................................................................................................	22	1	1	2633.00	2633	1411	1010	146	65	1	0
.........................................................TTGTGACCGACACTAACGGGT.............................................................................................................	21	0	1	2619.00	2619	344	283	1961	31	0	0
.........................................................TTGTGACCGACACTAACGGGTA............................................................................................................	22	0	1	1444.00	1444	14	7	1423	0	0	0
........................................................TTTGTGACCGACACTAACGGGC.............................................................................................................	22	1	1	1423.00	1423	966	404	42	10	1	0
........................................................TTTGTGACCGACACTAACGGGTAT...........................................................................................................	24	1	1	1275.00	1275	527	390	324	34	0	0
........................................................TTTGTGACCGACACTCACGGGT.............................................................................................................	22	1	1	1140.00	1140	145	994	1	0	0	0
........................................................TTTGTGACCGACACTAACGGGTAA...........................................................................................................	24	1	1	1131.00	1131	519	382	219	11	0	0
........................................................TTTGTGACCGACACTAACGG...............................................................................................................	20	0	1	869.00	869	289	182	386	12	0	0
........................................................TTTGTGACCGACACTACCGGGT.............................................................................................................	22	1	1	782.00	782	267	513	0	2	0	0
........................................................TTTGTGACCGACACTAACGGGG.............................................................................................................	22	1	1	580.00	580	249	288	37	6	0	0
........................................................TTTGTGACCGACACTAACG................................................................................................................	19	0	1	453.00	453	186	178	84	5	0	0
........................................................TTTGTGACCGACACTAACGTGT.............................................................................................................	22	1	1	378.00	378	76	294	5	3	0	0
........................................................TTTGTGACCGACACTAACGGGTT............................................................................................................	23	1	1	340.00	340	115	107	112	5	0	1
.........................................................TTGTGACCGACACTAACGGG..............................................................................................................	20	0	1	337.00	337	2	2	333	0	0	0
........................................................TTTGTGACCGACACTAACTGGT.............................................................................................................	22	1	1	321.00	321	59	250	4	8	0	0
........................................................TTTGTGACCGACACTAACAGGT.............................................................................................................	22	1	1	301.00	301	90	202	4	5	0	0
........................................................TTTGTGACCGACTCTAACGGGT.............................................................................................................	22	1	1	293.00	293	157	136	0	0	0	0
........................................................TTTGTGACCGACCCTAACGGGT.............................................................................................................	22	1	1	290.00	290	93	197	0	0	0	0
........................................................TTTGTGACCGCCACTAACGGGT.............................................................................................................	22	1	1	254.00	254	87	167	0	0	0	0
........................................................CTTGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	247.00	247	120	111	13	3	0	0
........................................................TTTGTGACCGACGCTAACGGGT.............................................................................................................	22	1	1	232.00	232	115	102	11	4	0	0
........................................................TTTGTGACCGACACTAACGGTT.............................................................................................................	22	1	1	221.00	221	119	99	1	2	0	0
........................................................TTTGTGGCCGACACTAACGGGT.............................................................................................................	22	1	1	220.00	220	108	95	10	7	0	0
........................................................TTTGTGACCGACACTAACGCGT.............................................................................................................	22	1	1	217.00	217	92	123	1	1	0	0
........................................................TTTGCGACCGACACTAACGGGT.............................................................................................................	22	1	1	216.00	216	126	81	2	7	0	0
........................................................TTTGTGACCGACACTAACGGGTC............................................................................................................	23	1	1	209.00	209	57	53	95	4	0	0
........................................................TGTGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	204.00	204	106	97	0	0	1	0
........................................................TTTGTGACCGACAATAACGGGT.............................................................................................................	22	1	1	199.00	199	85	111	1	2	0	0
........................................................TTGGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	193.00	193	116	73	4	0	0	0
........................................................TTTGGGACCGACACTAACGGGT.............................................................................................................	22	1	1	190.00	190	120	65	4	1	0	0
.......................................................CTTTGTGACCGACACTAACGGGT.............................................................................................................	23	1	1	186.00	186	73	43	70	0	0	0
........................................................TTTGTGACCGGCACTAACGGGT.............................................................................................................	22	1	1	184.00	184	86	81	13	4	0	0
........................................................TTTGTGACTGACACTAACGGGT.............................................................................................................	22	1	1	175.00	175	106	59	3	7	0	0
........................................................TTTGTGACCGACACTGACGGGT.............................................................................................................	22	1	1	171.00	171	90	68	9	4	0	0
........................................................TTTGTGACCGACACTAGCGGGT.............................................................................................................	22	1	1	165.00	165	86	65	13	1	0	0
........................................................TTTGTGACCAACACTAACGGGT.............................................................................................................	22	1	1	162.00	162	68	87	2	5	0	0
........................................................TTTGTGACCTACACTAACGGGT.............................................................................................................	22	1	1	160.00	160	39	103	8	10	0	0
..........................................................TGTGACCGACACTAACGGGT.............................................................................................................	20	0	1	156.00	156	28	17	110	0	1	0
........................................................TTTGTGACCGACACTAACCGGT.............................................................................................................	22	1	1	156.00	156	67	86	2	1	0	0
........................................................TTTGTGACCGAGACTAACGGGT.............................................................................................................	22	1	1	153.00	153	17	10	126	0	0	0
........................................................TTTGTGACCGACACTAACGGCT.............................................................................................................	22	1	1	150.00	150	97	51	1	1	0	0
........................................................TTTGTTACCGACACTAACGGGT.............................................................................................................	22	1	1	144.00	144	38	83	11	12	0	0
........................................................TTTGAGACCGACACTAACGGGT.............................................................................................................	22	1	1	135.00	135	113	21	1	0	0	0
........................................................TTTGTGACCGACACCAACGGGT.............................................................................................................	22	1	1	132.00	132	66	63	3	0	0	0
........................................................TTTGTGACAGACACTAACGGGT.............................................................................................................	22	1	1	129.00	129	81	44	3	1	0	0
........................................................TTTGTCACCGACACTAACGGGT.............................................................................................................	22	1	1	127.00	127	69	51	4	3	0	0
........................................................TTTGTGACCGACACTAAAGGGT.............................................................................................................	22	1	1	126.00	126	54	67	0	5	0	0
........................................................TTTGTGACCGACACTAACGGT..............................................................................................................	21	1	1	121.00	121	44	37	28	12	0	0
........................................................TTTGTGACCCACACTAACGGGT.............................................................................................................	22	1	1	118.00	118	49	65	4	0	0	0
........................................................TTTGTGACCGACACTAATGGGT.............................................................................................................	22	1	1	112.00	112	60	47	2	3	0	0
........................................................TTTGTGACCGACACTAACGAGT.............................................................................................................	22	1	1	110.00	110	40	69	0	1	0	0
........................................................TTTGTGACCGAAACTAACGGGT.............................................................................................................	22	1	1	108.00	108	25	20	63	0	0	0
........................................................TTTGTAACCGACACTAACGGGT.............................................................................................................	22	1	1	107.00	107	43	59	3	2	0	0
........................................................TTTATGACCGACACTAACGGGT.............................................................................................................	22	1	1	104.00	104	39	61	3	1	0	0
........................................................TTTGTGATCGACACTAACGGGT.............................................................................................................	22	1	1	104.00	104	45	56	0	3	0	0
........................................................TCTGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	103.00	103	52	46	2	3	0	0
........................................................TTCGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	102.00	102	58	43	1	0	0	0
........................................................TTTGTGACCGACACTAACGGGTAC...........................................................................................................	24	1	1	101.00	101	9	8	83	1	0	0
........................................................TTTGTGACCGACACTAACGGGAA............................................................................................................	23	1	1	96.00	96	31	23	39	3	0	0
........................................................TTTGTGACCGACACTAACGGAT.............................................................................................................	22	1	1	94.00	94	34	58	1	1	0	0
........................................................TTTGTGACCGATACTAACGGGT.............................................................................................................	22	1	1	94.00	94	38	39	14	3	0	0
........................................................TTTGTGACCGTCACTAACGGGT.............................................................................................................	22	1	1	93.00	93	59	30	4	0	0	0
........................................................TTTGTGACCGACACTAACGGGCA............................................................................................................	23	1	1	86.00	86	34	23	28	1	0	0
........................................................TTTCTGACCGACACTAACGGGT.............................................................................................................	22	1	1	82.00	82	45	34	3	0	0	0
........................................................TTTGTGACCGACACTAACGGGTTT...........................................................................................................	24	2	1	79.00	79	28	32	17	2	0	0
..........................................................TGTGACCGACACTAACGGGTA............................................................................................................	21	0	1	79.00	79	2	0	77	0	0	0
........................................................TTTGTGACCGAGACTAACGGGTA............................................................................................................	23	1	1	79.00	79	0	0	79	0	0	0
........................................................TTTGTGAACGACACTAACGGGT.............................................................................................................	22	1	1	77.00	77	34	40	0	3	0	0
........................................................TTTGTGACCGACACTATCGGGT.............................................................................................................	22	1	1	63.00	63	43	20	0	0	0	0
........................................................TTTGTGCCCGACACTAACGGGT.............................................................................................................	22	1	1	62.00	62	27	33	2	0	0	0
........................................................TTTGTGACCGACACTACCGGGC.............................................................................................................	22	2	1	60.00	60	30	30	0	0	0	0
........................................................TTTGTGACCGACATTAACGGGT.............................................................................................................	22	1	1	59.00	59	29	24	3	3	0	0
........................................................TTTGTGACCGACACTAACGGGTAG...........................................................................................................	24	0	1	58.00	58	26	10	20	2	0	0
........................................................GTTGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	56.00	56	34	14	6	2	0	0
........................................................ATTGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	55.00	55	27	24	3	1	0	0
........................................................TTTGTGACCGACACTAACGT...............................................................................................................	20	1	1	54.00	54	31	19	1	3	0	0
........................................................TTTGTGTCCGACACTAACGGGT.............................................................................................................	22	1	1	52.00	52	20	29	3	0	0	0
........................................................TTTGTGAGCGACACTAACGGGT.............................................................................................................	22	1	1	51.00	51	30	19	0	2	0	0
........................................................TTTGTGACCGACTCTAACGGGC.............................................................................................................	22	2	1	51.00	51	26	25	0	0	0	0
.......................................................CTTTGTGACCGACACTAACGGGTA............................................................................................................	24	1	1	50.00	50	7	1	41	1	0	0
........................................................TTTGTGACCGACACTAACGCGC.............................................................................................................	22	2	1	50.00	50	32	18	0	0	0	0
.......................................................ATTTGTGACCGACACTAACGGGT.............................................................................................................	23	1	1	50.00	50	5	2	43	0	0	0
........................................................TTTGTGACCGCCACTCACGGGT.............................................................................................................	22	2	1	50.00	50	3	47	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGGA............................................................................................................	23	1	1	49.00	49	9	10	30	0	0	0
........................................................TTTGTGACCGACACTAAGGGGT.............................................................................................................	22	1	1	48.00	48	36	9	2	1	0	0
........................................................TGGGTGACCGACACTAACGGGT.............................................................................................................	22	2	1	46.00	46	32	14	0	0	0	0
........................................................TTTGTGACCGACACTTACGGGT.............................................................................................................	22	1	1	46.00	46	19	25	2	0	0	0
........................................................TTTGTGACCGACACTCACGGGC.............................................................................................................	22	2	1	45.00	45	14	31	0	0	0	0
........................................................TTTGTGACCGAAACTAACGGGTA............................................................................................................	23	1	1	44.00	44	1	2	41	0	0	0
........................................................TTTGTGACCGACACTACCGGGTA............................................................................................................	23	1	1	43.00	43	14	29	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTATC..........................................................................................................	25	2	1	42.00	42	11	3	25	3	0	0
.........................................................TTGTGACCGACACTAACGG...............................................................................................................	19	0	1	42.00	42	0	0	42	0	0	0
........................................................TTTGTGACCGACACGAACGGGT.............................................................................................................	22	1	1	41.00	41	13	27	0	1	0	0
........................................................TTTTTGACCGACACTAACGGGT.............................................................................................................	22	1	1	40.00	40	13	12	15	0	0	0
........................................................TGTGTGACCGACTCTAACGGGT.............................................................................................................	22	2	1	40.00	40	20	20	0	0	0	0
.......................................................GTTTGTGACCGACACTAACGGGT.............................................................................................................	23	0	1	38.00	38	0	0	38	0	0	0
........................................................TGGGTGACCGACTCTAACGGGT.............................................................................................................	22	3	1	38.00	38	29	9	0	0	0	0
........................................................TGTGTGACCGACACTAACGGGC.............................................................................................................	22	2	1	38.00	38	28	9	0	0	1	0
........................................................TTGGTGACCGACTCTAACGGGT.............................................................................................................	22	2	1	38.00	38	23	15	0	0	0	0
........................................................TTTGTGACCGACACTAACGGA..............................................................................................................	21	1	1	35.00	35	18	16	1	0	0	0
........................................................TTTGTGACCGACACTCCCGGGT.............................................................................................................	22	2	1	33.00	33	4	29	0	0	0	0
........................................................TTTGTGACCGACACTCACGGG..............................................................................................................	21	1	1	33.00	33	3	30	0	0	0	0
........................................................TTTGCGACCGACACTAACGGGC.............................................................................................................	22	2	1	32.00	32	29	3	0	0	0	0
.......................................................TTTTGTGACCGACACTAACGGGT.............................................................................................................	23	1	1	32.00	32	1	1	30	0	0	0
........................................................TTTGTGACCGACACTAACGGTC.............................................................................................................	22	2	1	31.00	31	27	4	0	0	0	0
........................................................TTGGTGACCGACACTAACGGGC.............................................................................................................	22	2	1	31.00	31	21	10	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTAAA..........................................................................................................	25	2	1	31.00	31	17	9	5	0	0	0
........................................................TTTGTCACCCACACTAACGGGT.............................................................................................................	22	2	1	31.00	31	12	19	0	0	0	0
........................................................TTTGTGACCGCCACTACCGGGT.............................................................................................................	22	2	1	30.00	30	8	22	0	0	0	0
........................................................TTTGTGACCGACACTCACGGGTA............................................................................................................	23	1	1	30.00	30	2	28	0	0	0	0
........................................................TTTGTGACCGACAATAACGGGC.............................................................................................................	22	2	1	29.00	29	17	12	0	0	0	0
.........................................................TTGTGACCGACACTAACGGGTAT...........................................................................................................	23	1	1	29.00	29	0	2	27	0	0	0
........................................................TTTCTGACCGACTCTAACGGGT.............................................................................................................	22	2	1	28.00	28	8	20	0	0	0	0
........................................................TTAGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	28.00	28	11	14	3	0	0	0
........................................................TTTGTGACCGACACTACCGGGA.............................................................................................................	22	2	1	27.00	27	15	12	0	0	0	0
........................................................TTTGTGACCGACCCTCACGGGT.............................................................................................................	22	2	1	27.00	27	3	24	0	0	0	0
........................................................TTTGTGACCGACTCTCACGGGT.............................................................................................................	22	2	1	27.00	27	4	23	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTATT..........................................................................................................	25	1	1	27.00	27	7	11	9	0	0	0
........................................................TTTGTGACCGACCCTACCGGGT.............................................................................................................	22	2	1	27.00	27	3	24	0	0	0	0
........................................................TGTGTGACCGACACTAACGGGG.............................................................................................................	22	2	1	26.00	26	18	8	0	0	0	0
.......................................................TTTTGTGACCGACACTAACGGGTA............................................................................................................	24	1	1	26.00	26	0	0	26	0	0	0
........................................................TTTGTGACCGGCACTAACGGGTA............................................................................................................	23	1	1	26.00	26	7	4	15	0	0	0
..............................................................................................................TCGTTTTTGCGATCACAAATTC.......................................................	22	0	1	25.00	25	4	1	19	1	0	0
........................................................TTTGTGACCGACACTACCGGG..............................................................................................................	21	1	1	25.00	25	10	15	0	0	0	0
........................................................TTTGGGACCGACACTAACGGGC.............................................................................................................	22	2	1	25.00	25	24	1	0	0	0	0
.......................................................ATTTGTGACCGACACTAACGGGTA............................................................................................................	24	1	1	25.00	25	0	0	25	0	0	0
........................................................TGTGGGACCGACACTAACGGGT.............................................................................................................	22	2	1	24.00	24	14	10	0	0	0	0
........................................................TTTGTGACCGACACTAACGGTA.............................................................................................................	22	2	1	24.00	24	16	7	1	0	0	0
........................................................TTTGTGACCGACACTCACGGGA.............................................................................................................	22	2	1	24.00	24	5	19	0	0	0	0
........................................................TTTGTGACCGACACTAACGGTG.............................................................................................................	22	2	1	24.00	24	17	7	0	0	0	0
........................................................TTTGTGACCGACTATAACGGGT.............................................................................................................	22	2	1	23.00	23	6	17	0	0	0	0
........................................................TTTGTGACAGACACTAACGGGG.............................................................................................................	22	2	1	22.00	22	17	5	0	0	0	0
........................................................TTTGTGAACGACACTAACGGGC.............................................................................................................	22	2	1	22.00	22	15	7	0	0	0	0
........................................................TTTGTGACCGCCACTAACGGGC.............................................................................................................	22	2	1	21.00	21	12	9	0	0	0	0
........................................................TTTGTGACCGACACTTACGGGG.............................................................................................................	22	2	1	21.00	21	8	13	0	0	0	0
........................................................TATGTGACCGACACTAACGGGT.............................................................................................................	22	1	1	21.00	21	14	7	0	0	0	0
........................................................TTTGTGACTGACACTAACGGGTA............................................................................................................	23	1	1	20.00	20	11	7	1	1	0	0
.............................................................................................................CTCGTTTTTGCGATCACAAATTCT......................................................	24	0	1	20.00	20	5	4	11	0	0	0
........................................................TTTGCGACCGACACTAACGGGTA............................................................................................................	23	1	1	20.00	20	11	4	5	0	0	0
........................................................TTTGTGACCGACACTACCGCGT.............................................................................................................	22	2	1	19.00	19	15	4	0	0	0	0
........................................................TTTGAGACCGACACTAACGGGG.............................................................................................................	22	2	1	19.00	19	17	2	0	0	0	0
........................................................TTTGTGACCGACACTAAAGGGC.............................................................................................................	22	2	1	19.00	19	12	7	0	0	0	0
........................................................TTTGACACCGACACTAACGGGT.............................................................................................................	22	2	1	19.00	19	15	4	0	0	0	0
...........................................................GTGACCGACACTAACGGGT.............................................................................................................	19	0	1	19.00	19	1	3	15	0	0	0
..............................................................................................................TCGTTTTTGCGATCACAAATT........................................................	21	0	1	19.00	19	5	3	10	1	0	0
........................................................CTTGTGACCGACACTAACGGGTA............................................................................................................	23	1	1	19.00	19	8	5	6	0	0	0
.........................................................TTGTGACCGACACTAACGGGTAA...........................................................................................................	23	1	1	19.00	19	1	0	18	0	0	0
........................................................TTTGTGACCGACACTAACGGGTCT...........................................................................................................	24	2	1	18.00	18	10	5	2	1	0	0
.......................................................GTTTGTGACCGACACTAACGGGTA............................................................................................................	24	0	1	18.00	18	0	0	18	0	0	0
........................................................TTTGTGACCGACAGTAACGGGT.............................................................................................................	22	1	1	18.00	18	13	2	2	1	0	0
........................................................TTTGTGACCGACACTAACGCGG.............................................................................................................	22	2	1	18.00	18	8	10	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTG............................................................................................................	23	1	1	18.00	18	2	5	11	0	0	0
........................................................TTTGTGACCGATACTAACGGGTA............................................................................................................	23	1	1	18.00	18	3	3	12	0	0	0
........................................................TTTGTGACCCACACTAACGGGC.............................................................................................................	22	2	1	18.00	18	7	11	0	0	0	0
........................................................TTTGTGACCGACCCTAACGGGTA............................................................................................................	23	1	1	18.00	18	5	12	1	0	0	0
........................................................TTTGTGACCGAGACTAACGGG..............................................................................................................	21	1	1	18.00	18	0	1	17	0	0	0
........................................................TTTGTGACCGACTCTATCGGGT.............................................................................................................	22	2	1	18.00	18	13	5	0	0	0	0
........................................................TTGGGGACCGACACTAACGGGT.............................................................................................................	22	2	1	18.00	18	11	7	0	0	0	0
........................................................TTTGTGACCGACCCTAACGGGC.............................................................................................................	22	2	1	17.00	17	7	10	0	0	0	0
........................................................TTTGTGACCGACACTAACCGGC.............................................................................................................	22	2	1	17.00	17	8	9	0	0	0	0
........................................................TTTGTGACCGACACTAACAGGTA............................................................................................................	23	1	1	17.00	17	9	6	2	0	0	0
........................................................TTTGTTACCGACACTAACGGGTA............................................................................................................	23	1	1	17.00	17	1	5	11	0	0	0
........................................................TTTGTGACCGACACTAACGTGTA............................................................................................................	23	1	1	17.00	17	2	12	3	0	0	0
........................................................TTTGTGACCTACACTAACGGGC.............................................................................................................	22	2	1	16.00	16	6	10	0	0	0	0
........................................................TTTGTGACCGACACTAACAAGT.............................................................................................................	22	2	1	16.00	16	2	14	0	0	0	0
........................................................TTTGTGACGGACACTAACGGGT.............................................................................................................	22	1	1	16.00	16	7	6	1	2	0	0
........................................................TTTGTGACCGCCCCTAACGGGT.............................................................................................................	22	2	1	16.00	16	3	13	0	0	0	0
.........................................................TTGTGACCGACACTAACGGGTC............................................................................................................	22	1	1	16.00	16	0	1	15	0	0	0
........................................................TTTGAGACCGACACTAACGGGTA............................................................................................................	23	1	1	16.00	16	11	2	3	0	0	0
.........................................................TTGTGACCGACACTAACGGGA.............................................................................................................	21	1	1	16.00	16	3	5	8	0	0	0
........................................................TTTGTGACCTACACTAACTGGT.............................................................................................................	22	2	1	16.00	16	4	12	0	0	0	0
........................................................TTTGTGACCGACACTCACCGGT.............................................................................................................	22	2	1	16.00	16	3	13	0	0	0	0
...........................................................GTGACCGACACTAACGGGTA............................................................................................................	20	0	1	16.00	16	0	2	14	0	0	0
........................................................TTTGTGACCGACACTAACTGG..............................................................................................................	21	1	1	15.00	15	2	12	1	0	0	0
........................................................TTTGTGACCGACAATAACGGGG.............................................................................................................	22	2	1	15.00	15	9	6	0	0	0	0
........................................................TTTGTGACCGACACTAACTGGA.............................................................................................................	22	2	1	15.00	15	7	8	0	0	0	0
........................................................TTTGTGACCGACACTAACGGC..............................................................................................................	21	1	1	15.00	15	5	7	3	0	0	0
........................................................TTTGTGGCCGACACTAACGGGTA............................................................................................................	23	1	1	15.00	15	5	3	6	1	0	0
........................................................TTTGTGACCGACACTAACGCTT.............................................................................................................	22	2	1	15.00	15	3	12	0	0	0	0
........................................................TTTGTGACCGACACTACCGGTT.............................................................................................................	22	2	1	15.00	15	13	2	0	0	0	0
........................................................TTTGTGACCGACTCTAACGGTT.............................................................................................................	22	2	1	15.00	15	6	9	0	0	0	0
........................................................TTTGTGACCGACACTACCGGGG.............................................................................................................	22	2	1	15.00	15	11	4	0	0	0	0
........................................................TTGGTGACCGACACTAACGGGTA............................................................................................................	23	1	1	14.00	14	10	3	1	0	0	0
........................................................TTTGTGACCGACACTAACCGG..............................................................................................................	21	1	1	14.00	14	8	6	0	0	0	0
........................................................TTTGTGACCGAAACTAACGGG..............................................................................................................	21	1	1	14.00	14	1	0	13	0	0	0
........................................................CTTGTGACCGACACTAACGGGC.............................................................................................................	22	2	1	14.00	14	10	4	0	0	0	0
........................................................TTGGTGACCGACAATAACGGGT.............................................................................................................	22	2	1	14.00	14	10	4	0	0	0	0
........................................................TTTGTGACCGACACAAACGGGT.............................................................................................................	22	1	1	14.00	14	8	4	2	0	0	0
........................................................TTTGTGACCGACACTAACGGTTA............................................................................................................	23	1	1	14.00	14	6	3	5	0	0	0
........................................................TTTGTGACCTACACTAACGGGTA............................................................................................................	23	1	1	14.00	14	1	4	8	1	0	0
........................................................TTTCTGACCGACAATAACGGGT.............................................................................................................	22	2	1	14.00	14	2	12	0	0	0	0
........................................................TTTGTGACCGACTCTAACGGGTA............................................................................................................	23	1	1	14.00	14	8	5	1	0	0	0
........................................................TGGGTGACCGACAATAACGGGT.............................................................................................................	22	3	1	13.00	13	10	3	0	0	0	0
........................................................TGGGTGACCGACACTAACGGGG.............................................................................................................	22	3	1	13.00	13	7	6	0	0	0	0
........................................................TTTGTGACCGTCACTAACGGGC.............................................................................................................	22	2	1	13.00	13	7	6	0	0	0	0
........................................................TTTGGGACCGACACGAACGGGT.............................................................................................................	22	2	1	13.00	13	4	9	0	0	0	0
........................................................TTTGGGACCGACACTAACGGGA.............................................................................................................	22	2	1	13.00	13	10	3	0	0	0	0
........................................................TTTGTGACCGACACTAACGCTC.............................................................................................................	22	3	1	13.00	13	4	9	0	0	0	0
........................................................TTTGTGACCGACACTAACGCG..............................................................................................................	21	1	1	13.00	13	9	3	1	0	0	0
........................................................TTTGTGACCGCCACTAACGGGTA............................................................................................................	23	1	1	13.00	13	6	6	1	0	0	0
........................................................TTTGAGACCGACTCTAACGGGT.............................................................................................................	22	2	1	13.00	13	9	4	0	0	0	0
........................................................TTTGTGACCGACCCTAACGGGG.............................................................................................................	22	2	1	13.00	13	2	11	0	0	0	0
........................................................TTGGTGACCGACACTAACGGGG.............................................................................................................	22	2	1	12.00	12	7	5	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTTA...........................................................................................................	24	2	1	12.00	12	4	7	1	0	0	0
........................................................TTTGGGACCGACACTAACGGGG.............................................................................................................	22	2	1	12.00	12	7	5	0	0	0	0
........................................................TTTGTGACCGACACTGACGGGC.............................................................................................................	22	2	1	12.00	12	9	3	0	0	0	0
........................................................TTTGTGACCGACCCTAACGGGA.............................................................................................................	22	2	1	12.00	12	3	9	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTGT...........................................................................................................	24	2	1	12.00	12	2	8	0	2	0	0
........................................................TTTGTGACCGACGCTAACGGGTA............................................................................................................	23	1	1	12.00	12	4	2	6	0	0	0
.........................................................TTGTGACCGACGCTAACGGGT.............................................................................................................	21	1	1	12.00	12	1	0	11	0	0	0
........................................................TTTGAGACCGACACTAACGGGC.............................................................................................................	22	2	1	12.00	12	11	1	0	0	0	0
........................................................TTTGTGACCGACACTAACGCGA.............................................................................................................	22	2	2	12.00	24	10	14	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGCT............................................................................................................	23	2	1	12.00	12	5	7	0	0	0	0
........................................................TTCGTGACCGACACTAACGGGTA............................................................................................................	23	1	1	12.00	12	9	2	1	0	0	0
........................................................TTTGTGACCGACTCTAACGGG..............................................................................................................	21	1	1	12.00	12	6	6	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTCA...........................................................................................................	24	2	1	12.00	12	3	8	1	0	0	0
..........................................................TTTGACCGACACTAACGGGT.............................................................................................................	20	1	1	11.00	11	5	0	4	2	0	0
........................................................TTTGTGACCGACACTCACGGTT.............................................................................................................	22	2	1	11.00	11	7	4	0	0	0	0
........................................................TTTGTGACCGACACTAGCGGGTA............................................................................................................	23	1	1	11.00	11	3	2	6	0	0	0
........................................................TTTGTGACCGACACTAACGTG..............................................................................................................	21	1	1	11.00	11	4	7	0	0	0	0
........................................................TTTGTGACCGACACTAACTGGC.............................................................................................................	22	2	1	11.00	11	3	8	0	0	0	0
........................................................TTTGTGACCGACACTAACTGGTA............................................................................................................	23	1	1	11.00	11	3	8	0	0	0	0
........................................................TTTGTGACCGACTCTAACGGGA.............................................................................................................	22	2	1	11.00	11	7	4	0	0	0	0
........................................................TTTGTGACCGACACTAACGAGTA............................................................................................................	23	1	1	11.00	11	2	7	2	0	0	0
........................................................TTTGTTACCGACACTAACTGGT.............................................................................................................	22	2	1	11.00	11	1	10	0	0	0	0
........................................................TGTGTGACCGACACTCACGGGT.............................................................................................................	22	2	1	11.00	11	3	8	0	0	0	0
.........................................................TTGTGACCGACACTAACGGGTT............................................................................................................	22	1	1	11.00	11	0	2	9	0	0	0
........................................................TTTGTGACCGACACTCACTGGT.............................................................................................................	22	2	1	11.00	11	7	4	0	0	0	0
........................................................TTTGTCACCGACACTAACCGGT.............................................................................................................	22	2	1	11.00	11	8	3	0	0	0	0
........................................................TTTGTGACCGACACTACCGGCT.............................................................................................................	22	2	1	11.00	11	6	5	0	0	0	0
.........................................................TTGTGACCGACACTAACGGGTAC...........................................................................................................	23	1	1	11.00	11	0	1	10	0	0	0
........................................................TTTGTCACCGACACTAACGGGC.............................................................................................................	22	2	1	11.00	11	4	7	0	0	0	0
........................................................TTTGTGACCGACTCTTACGGGC.............................................................................................................	22	3	1	11.00	11	4	7	0	0	0	0
........................................................TTTGTGACAGACACTAACGGGTA............................................................................................................	23	1	1	11.00	11	7	4	0	0	0	0
.........................................................TTGTGACCGACACTAACGGGC.............................................................................................................	21	1	1	11.00	11	5	1	5	0	0	0
........................................................TGTCTGACCGACACTAACGGGT.............................................................................................................	22	2	1	10.00	10	6	4	0	0	0	0
........................................................TTTGTGACCGACACTACCGCGC.............................................................................................................	22	3	1	10.00	10	5	5	0	0	0	0
........................................................TTTGTGACCAACACTAACGGGTA............................................................................................................	23	1	1	10.00	10	2	7	1	0	0	0
.........................................................TTGTGACCGACACTCACGGGT.............................................................................................................	21	1	1	10.00	10	0	10	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGGC............................................................................................................	23	2	1	10.00	10	3	6	1	0	0	0
.............................................................................................................CTCGTTTTTGCGATCACAAATT........................................................	22	0	1	10.00	10	2	1	7	0	0	0
........................................................TTTGTGACCGACACTCACGTGT.............................................................................................................	22	2	1	10.00	10	3	7	0	0	0	0
........................................................TTTGTGACCGACACTACCCGGT.............................................................................................................	22	2	1	10.00	10	6	4	0	0	0	0
........................................................TTTGTGCCCGACACTACCGGGT.............................................................................................................	22	2	1	10.00	10	5	5	0	0	0	0
.............................................................................................................CTCGTTTTTGCGATCACAAATTC.......................................................	23	0	1	10.00	10	2	1	7	0	0	0
........................................................TTTGGGACCGACACTAACGGGTA............................................................................................................	23	1	1	10.00	10	4	3	3	0	0	0
........................................................TTTCTGACCGACACTAACGGTT.............................................................................................................	22	2	1	10.00	10	4	6	0	0	0	0
........................................................TTTGTGACCGACACTACAGGGT.............................................................................................................	22	2	1	10.00	10	5	5	0	0	0	0
........................................................TTTGTGACCGACACTAACGTGC.............................................................................................................	22	2	1	10.00	10	6	4	0	0	0	0
........................................................TTTGTGTCCCACACTAACGGGT.............................................................................................................	22	2	1	10.00	10	3	7	0	0	0	0
........................................................TTTGTGACCGACACTAACGTGA.............................................................................................................	22	2	1	10.00	10	3	7	0	0	0	0
........................................................TTTGTGTCCGACGCTAACGGGT.............................................................................................................	22	2	1	10.00	10	6	4	0	0	0	0
........................................................TTGCTGACCGACTCTAACGGGT.............................................................................................................	22	3	1	10.00	10	7	3	0	0	0	0
........................................................TTTCTGACCGACACTAACGGGC.............................................................................................................	22	2	1	10.00	10	8	2	0	0	0	0
........................................................TTTGTGACCGACACTAACCGCT.............................................................................................................	22	2	1	10.00	10	8	2	0	0	0	0
........................................................TTTGTGACCGACACTACCTGGT.............................................................................................................	22	2	1	10.00	10	7	3	0	0	0	0
........................................................TTTGTGACCGCCACTAACGTGT.............................................................................................................	22	2	1	10.00	10	7	3	0	0	0	0
........................................................TGTGTGACAGACACTAACGGGT.............................................................................................................	22	2	1	10.00	10	8	2	0	0	0	0
........................................................TTTGTGACCGGCACTCACGGGT.............................................................................................................	22	2	1	10.00	10	1	9	0	0	0	0
........................................................TCTGTGACCGACACTAACGGGTA............................................................................................................	23	1	1	10.00	10	5	0	5	0	0	0
........................................................TTTGTGACCGACACTCACGGGTAT...........................................................................................................	24	2	1	9.00	9	1	8	0	0	0	0
........................................................TTTGTGACCGGCACTAACGGGC.............................................................................................................	22	2	1	9.00	9	2	7	0	0	0	0
........................................................TTTGAGACCCACACTAACGGGT.............................................................................................................	22	2	1	9.00	9	7	2	0	0	0	0
........................................................TGTGTGACCGACACTAACGGGTA............................................................................................................	23	1	1	9.00	9	5	3	1	0	0	0
........................................................TTTGTGACCGACAATAACCGGT.............................................................................................................	22	2	1	9.00	9	2	7	0	0	0	0
........................................................TTTGTGACCGACACTGACGGGA.............................................................................................................	22	2	1	9.00	9	5	4	0	0	0	0
........................................................TTTGTGACCGACACTACCGTGT.............................................................................................................	22	2	1	9.00	9	1	8	0	0	0	0
........................................................TTTGACACCCACACTAACGGGT.............................................................................................................	22	3	1	9.00	9	8	1	0	0	0	0
........................................................TTTGTGAACGACAATAACGGGT.............................................................................................................	22	2	1	9.00	9	6	3	0	0	0	0
........................................................TTTGTGACCGACTCTAACGGGG.............................................................................................................	22	2	1	9.00	9	5	4	0	0	0	0
........................................................TTTGTGACCGACACTAGCGGGG.............................................................................................................	22	2	1	9.00	9	5	4	0	0	0	0
........................................................TTTGTGAACGACACTAAAGGGT.............................................................................................................	22	2	1	9.00	9	2	7	0	0	0	0
........................................................TTTGTGACCGACACGAACGGGC.............................................................................................................	22	2	1	9.00	9	4	5	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGCAA...........................................................................................................	24	2	1	9.00	9	6	3	0	0	0	0
........................................................TTTGTGACCCACACTAACGGGTA............................................................................................................	23	1	1	9.00	9	4	3	2	0	0	0
........................................................TGTGTGACCGACAATAACGGGT.............................................................................................................	22	2	1	9.00	9	3	6	0	0	0	0
........................................................TGTGTGACCGACACTTACGGGT.............................................................................................................	22	2	1	9.00	9	4	5	0	0	0	0
........................................................TGTGTGACCGGCACTAACGGGT.............................................................................................................	22	2	1	9.00	9	5	4	0	0	0	0
........................................................TTTGCGACCGACTCTAACGGGT.............................................................................................................	22	2	1	8.00	8	5	3	0	0	0	0
........................................................TTTGTGACCGCCACTAACGGGG.............................................................................................................	22	2	1	8.00	8	3	5	0	0	0	0
........................................................TTTGTCTCCCACACTAACGGGT.............................................................................................................	22	3	1	8.00	8	0	8	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGTATTC.........................................................................................................	26	2	1	8.00	8	0	1	7	0	0	0
........................................................TTTGTGAACGACACTAACGGGTA............................................................................................................	23	1	1	8.00	8	4	2	2	0	0	0
........................................................TGTGTGACCGACTCTAACGGGC.............................................................................................................	22	3	1	8.00	8	6	2	0	0	0	0
........................................................TTTGTGACCGACACTAACGGGCAT...........................................................................................................	24	2	1	8.00	8	5	3	0	0	0	0
........................................................TTTGTGACCGACACTGACGGGTA............................................................................................................	23	1	1	8.00	8	0	5	3	0	0	0
........................................................TTGGTGACCGACACTAACCGGT.............................................................................................................	22	2	1	8.00	8	5	3	0	0	0	0
........................................................TTGGTGACCGACTATAACGGGT.............................................................................................................	22	3	1	8.00	8	4	4	0	0	0	0
........................................................TGTGTGACCGACACTACCGGGT.............................................................................................................	22	2	1	8.00	8	4	4	0	0	0	0
........................................................TTTGTGACCGACACTCACGGGG.............................................................................................................	22	2	1	8.00	8	0	8	0	0	0	0
........................................................TGGGTGACCGACACTAACGGGC.............................................................................................................	22	3	1	8.00	8	4	4	0	0	0	0
........................................................TTTGTGACCGACACTAACGGCC.............................................................................................................	22	2	1	8.00	8	5	3	0	0	0	0
........................................................TTTGTGACCGACACTAACGGATA............................................................................................................	23	1	1	8.00	8	2	3	3	0	0	0
........................................................TTTGTGACCGACACTAATGGGTA............................................................................................................	23	1	1	8.00	8	3	4	1	0	0	0
........................................................TTTGTGATCGACACTAACGGGTA............................................................................................................	23	1	1	8.00	8	6	2	0	0	0	0
........................................................TTTGGGACCGACACTAACGCGT.............................................................................................................	22	2	1	8.00	8	4	4	0	0	0	0
........................................................TTTGTGACCCACACTAACGCGT.............................................................................................................	22	2	1	8.00	8	2	6	0	0	0	0
........................................................TTTGTGACCGACACTAACGAAT.............................................................................................................	22	2	1	8.00	8	4	4	0	0	0	0

ATGTGTATATACAAATCACTTAGACAACAGTTCACATAGGACACAACGTCAAAGCCAAACACTGGCTGTGATTGCCCATCAACTCCGTAGAGCATAAGCGACAAAATATGAGCAAAAACGCTAGTGTTTAAGACTTTAACGTTGCTTTGCGTTGCTTTTACTTTTCACGTAAGGGTTCCTCTCCCGC **************************************.(((((((((((((((((((((.((.((..((((((((..(((((((...((....)).)))))))))))))))..)))).)))))))..))))))))))))))..***************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	V049 head	M046 female body
...........................................................................................................ATGGGGAAAAAGGCTAGTGTT...........................................................	21	3	2	0.50	1	1	0	0
.................................................................................................GCGACAAACACTGAGCAAAA......................................................................	20	3	18	0.22	4	3	0	1
.....................................................GCCAAACACAGCCAGTGATT..................................................................................................................	20	3	6	0.17	1	0	1	0
.....................................................................................................CAAAATCTGAGCGAAAGCG...................................................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Type	Alignment
droMoj3	scaffold_6680:18485444-18485630 +	dmo-mir-274	Known_mirbase	TAC--ACATATATGTTTAGTG--AATCT-GTT-------------GTC-----------------------------------------A---------AGTG-----------TATCC--------TGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCATC-TCG---TATT-------CGCTGT---TTTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CGCAACGAAAATGAAA-AGTGCATTCCCAAGGA-----------------------------------------------------------------------GAGGGCG
droVir3	scaffold_13049:23860676-23860854 +	dvi-mir-274	Known_mirbase	TAG--GCAA-TGTGTT-------TTCCCAGTGAAT-----------CCC----------------------------------------------------------AATGTCGCATCCTGT------TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACCTCG---AATA-------CGCTGT---TT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AGCAACAAGAAA------AT---TTCTCAACGAACTGAAC-----------------------------------------------------------------------
droGri2	scaffold_15110:13805516-13805768 -	dgr-mir-274	Known_mirbase	TAG--AGTG-TGTGTATATTG--A-------------------------------------------AAAAGTGAAA-------TAGTGC---------AAC-----GTATACGAGTCCTGTG----CGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCCTCG-------CATT--CTGCTGG---CT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-ATCAACAAAACCATAA----------------------AAAAGAAAAACCATAAAATCTAAAACACAAATTTGATGCGAATGAAAAATGGGAGAAGGTTAGGGATGGGGGG
droWil2	scf2_1100000004762:2705130-2705318 -	dwi-mir-274	Known_mirbase	TTT--CGTT-TGTGTT-------TTTTTTTT----TTACTGTT--GTTT---TGTGATTATTTT-----------------------------------------------TAATATCC----------TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAA--CA---AAGTCGTT--TTTCTGGCCTTT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACA-AACACAT---------------------------------------------------------------------------------------
dp5	XR_group6:10040163-10040365 -	dps-mir-274	Known_mirbase	TCC--GTGTGTCTGTG-------------------TGACTGTGTGACCGTGTGGTGGCATTCCCCTGGGA-----CC-------TGGGACCTGGCACCTGGA--A------CCTGGTCC--------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGG---AC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGG-AATGTGTGTGCA----------A-----------------------------------------------------------------------
droPer2	scaffold_61:320231-320434 -	dpe-mir-274	Known_mirbase	TCC--GTGTGTCTGTG-------------------TGACTGTGTGACCGTGTGGTGGCATTCCCCTGGGA-----CCTGGCACCTGGGACCTGGCACCTGGG--A------CCTGGTCC--------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGG---AC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGG-AATGTGT---------------------------------------------------------------------------------------
droAna3	scaffold_13337:5918573-5918742 +	dan-mir-274	Known_mirbase	TAT--ACTTTTAT-----------------T--GT-------TTCGGAGTGAAGTGCCTTTTTTTAAAAA-----AC------------------------------------AGA-----------AATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA-------------------TACAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAAGAAA--ACATTGTATT--------------------------------------------------------------------------------------
droBip1	scf7180000396371:1256511-1256653 +			TAC--GGAG-TGA------------A----GTGTT-----------TTT----------------------------------------------------------GAAGACAGA------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGATT-------------------TACAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAAAATA--A----------------------AA-----------------------------------------------------------------------
droKik1	scf7180000302391:1192145-1192312 -			TAT--ATATATATATATAGTG--GAAAT---------------------------------------------------------AGTAA---------AAAGTT------CC-TATCCTTTTTTAACGTGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTC-T----TAGCCGTT--CCGCTGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAG-AGCAGC---------------------------------------------------------------------------------------------------------
droFic1	scf7180000454113:3056714-3056875 -			TTT--GCCC-AGGCT-----A--AAGCCAGTG-------------ATC-----------------------------------------A---------GGAGTT------CC-TATCC--------TGTGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCC-AA---AAGCCGCCCACCGCAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAG-AGCAGCAA-------------------------------------------------------------------------------------------------------
droEle1	scf7180000490993:2151298-2151446 -			CAC--CTCA-TG-GT-----G--CTTCTGGTG-------------ATC-----------------------------------------A---------AGAGTT------CCGAATCC--------TGTGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC-------------------CGCAGG---AT--TACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAA-AGCAACAAAA-----------------------------------------------------------------------------------------------------
droRho1	scf7180000778919:8980-9131 +			AATCAGCCC-ATGGT-----G--CAGCTAGTG-------------ATC-----------------------------------------A---------AGAGTT------CCAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCTC-------------------CGCAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCAAAA-----------------------------------------------------------------------------------------------------
droBia1	scf7180000302334:85632-85773 +			TCA--CCTC---------------------------------------C----------------------------------------------------------AAACCCACATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCC-AG---GAGCCGCC--CCTCAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAA------------------------------------------------------------------------------------------------------
droTak1	scf7180000414445:560334-560510 -			TTC--CGAAACACCTCAAATGGAAAACAAGTT-------------ACC-----------------------------------------A---------AGAGTTCCGAATCCGAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCC-AA---AAGCCGCC--CCGCAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAAA-----------------------------------------------------------------------------------------------------
droEug1	scf7180000409711:3524212-3524374 +			CAC--C-TC-AGGGT-----C--CAACTAATT-------------ATC-----------------------------------------A---------AGAGTT------CCAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTA---AAAGGAGCCGCT--CACCAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCTAAA-----------------------------------------------------------------------------------------------------
dm3	chr3L:11649980-11650132 +	dme-mir-274	Known_mirbase	TGC--ATTTTAAT------TTTAATAT-TGGTAGT-----------TTT----------------------------------------------------------GGTGACGAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CTCAACGAAATTG--------------------------------------------------------------------------------------------------
droSim2	3l:11358221-11358360 +	dsi_305	confident	ATG--TTAA-TAT---------------TGTTAGT-----------TTT----------------------------------------------------------AGTGACAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCAC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAA------------------------------------------------------------------------------------------------------
droSec2	scaffold_0:3837002-3837140 +	dse-mir-274	Known_mirbase	TAA--TAT--------------------TGTTAGT-----------TTT----------------------------------------------------------AGTGACAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAATAT---------------------------------------------------------------------------------------------------
droYak3	3L:11678600-11678746 +	dya-mir-274	Known_mirbase	TAA--GTGCAGCTA---------------G-----TTAGTGTTTGATTT----------------------------------------------------------TATGCCGAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAA------------------------------------------------------------------------------------------------------
droEre2	scaffold_4784:11632262-11632417 +	der-mir-274	Known_mirbase	TAA--GTGCAGCTG---------------G-----TTAGTGCTTGATTT----------------------------------------------------------TATGGCCAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACGAAGTCGTGA----------------------AG-----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TAC--ACATATATGTTTAGTG--AATCT-GTT-------------GTC-----------------------------------------A---------AGTG-----------TATCC--------TGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCATC-TCG---TATT-------CGCTGT---TTTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CGCAACGAAAATGAAA-AGTGCATTCCCAAGGA-----------------------------------------------------------------------GAGGGCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	148678.00	148678	22084	4	55166	66752	1	4671
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	22904.00	22904	16301	0	2752	3601	0	250
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	5428.00	5428	3535	0	834	1029	0	30
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	2633.00	2633	146	0	1010	1411	1	65
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	2619.00	2619	1961	0	283	344	0	31
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	1444.00	1444	1423	0	7	14	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	1423.00	1423	42	0	404	966	1	10
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	1275.00	1275	324	0	390	527	0	34
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	1131.00	1131	219	0	382	519	0	11
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	869.00	869	386	0	182	289	0	12
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	580.00	580	37	0	288	249	0	6
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	453.00	453	84	0	178	186	0	5
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	340.00	340	112	1	107	115	0	5
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	337.00	337	333	0	2	2	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	209.00	209	95	0	53	57	0	4
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	156.00	156	110	0	17	28	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	121.00	121	28	0	37	44	0	12
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	101.00	101	83	0	8	9	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	79.00	79	17	0	32	28	0	2
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	79.00	79	77	0	0	2	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	58.00	58	20	0	10	26	0	2
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	54.00	54	1	0	19	31	0	3
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATC...................................................................................................................................................................................................	25	1	42.00	42	25	0	3	11	0	3
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	42.00	42	42	0	0	0	0	0
..............................................................................................................................................GTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	38.00	38	38	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	35.00	35	1	0	16	18	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTC......................................................................................................................................................................................................	22	1	31.00	31	0	0	4	27	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	31.00	31	5	0	9	17	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	29.00	29	27	0	2	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTC................................................................................................................................	22	1	25.00	25	19	0	1	4	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	24.00	24	1	0	7	16	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTG......................................................................................................................................................................................................	22	1	24.00	24	0	0	7	17	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT...............................................................................................................................	24	1	20.00	20	11	0	4	5	0	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	19.00	19	15	0	3	1	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATT.................................................................................................................................	21	1	19.00	19	10	0	3	5	0	1
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	19.00	19	18	0	0	1	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	18.00	18	2	0	5	10	0	1
..............................................................................................................................................GTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	18.00	18	18	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	18.00	18	11	0	5	2	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	22	1	16.00	16	15	0	1	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	16.00	16	8	0	5	3	0	0
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	16.00	16	14	0	2	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	15.00	15	3	0	7	5	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGCTC......................................................................................................................................................................................................	22	1	13.00	13	0	0	9	4	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTA....................................................................................................................................................................................................	24	1	12.00	12	1	0	7	4	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTGT....................................................................................................................................................................................................	24	1	12.00	12	0	0	8	2	0	2
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	12.00	12	0	0	7	5	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCA....................................................................................................................................................................................................	24	1	12.00	12	1	0	8	3	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	22	1	11.00	11	9	0	2	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	23	1	11.00	11	10	0	1	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	21	1	11.00	11	5	0	1	5	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGGC.....................................................................................................................................................................................................	23	1	10.00	10	1	0	6	3	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT.................................................................................................................................	22	1	10.00	10	7	0	1	2	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC................................................................................................................................	23	1	10.00	10	7	0	1	2	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCC......................................................................................................................................................................................................	22	1	8.00	8	0	0	3	5	0	0

droVir3

TAG--GCAA-TGTGTT-------TTCCCAGTGAAT-----------CCC----------------------------------------------------------AATGTCGCATCCTGT------TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACCTCG---AATA-------CGCTGT---TT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AGCAACAAGAAA------AT---TTCTCAACGAACTGAAC-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	255753.00	255753	1178	10406	18134	8	33	4332	26	4707	63	4616	144	0	0	0	11211	8862	7397	13472	9220	5987	5551	14072	20659	123	250	156	319	289	11949	9595	3795	15985	1	3538	2	0	1	0	42	6153	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	137	0	5	57992	3811	0	215	351	0	0	0	50	69	102	237	417	85	0	0	3	2	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	109911.00	109911	172	1210	16057	3	6	420	1	196	2	129	6	0	0	0	9247	6435	4437	10561	4091	4544	760	6820	13844	26	194	97	203	214	8080	4137	2078	8392	0	310	3	0	0	0	7	750	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	23	1	2	5346	166	0	270	378	0	0	0	18	22	27	92	110	22	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	25565.00	25565	200	1377	6456	0	1	104	1	65	4	47	3	0	0	0	1071	885	755	1388	635	485	136	1043	1519	1	33	19	45	27	2164	1742	751	2896	0	101	1	0	0	0	0	146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	1146	53	0	17	105	0	0	0	13	10	13	27	58	10	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	14391.00	14391	3	25	230	0	0	23	1	15	0	7	1	0	0	0	1810	939	739	1911	769	992	69	1343	2290	0	6	7	10	8	691	464	203	890	0	33	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	782	11	0	11	36	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	14088.00	14088	3	39	193	0	3	66	0	16	0	20	0	0	0	0	1208	1122	851	2018	753	865	162	1087	1953	0	14	5	22	18	655	495	305	1080	0	81	0	0	1	0	2	126	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	796	33	0	28	59	0	0	0	0	0	1	3	4	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	3513.00	3513	14	173	161	0	0	83	0	52	2	61	2	0	0	0	74	39	88	102	70	45	48	133	163	1	1	0	0	0	66	100	23	122	0	63	0	0	0	0	0	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1671	88	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	3189.00	3189	109	1271	32	1	0	21	0	15	0	15	2	0	0	0	30	20	15	30	16	11	37	29	47	0	1	0	0	0	10	6	9	49	0	8	0	0	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1346	21	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	2804.00	2804	9	112	88	0	0	20	0	2	0	4	0	0	0	0	211	167	196	345	156	125	21	276	355	1	3	1	2	4	113	112	51	172	0	7	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	212	3	0	4	7	0	0	0	0	0	0	1	2	1	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	2270.00	2270	1	16	1698	0	0	12	0	16	0	5	2	0	0	0	33	25	14	28	21	15	15	36	46	0	0	2	3	0	37	23	10	47	0	4	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	129	9	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	1855.00	1855	37	316	637	1	0	12	0	11	0	14	1	0	0	0	2	3	2	4	6	2	10	3	33	0	2	0	2	2	138	205	50	114	0	8	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	187	19	0	0	5	0	0	0	0	1	1	0	7	3	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	1783.00	1783	0	1	1517	0	0	3	0	2	0	0	0	0	0	0	24	17	13	26	12	14	0	16	36	0	1	0	2	0	29	19	6	32	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	1555.00	1555	93	714	43	0	0	6	0	14	0	9	1	0	0	0	24	21	13	18	8	4	7	19	28	1	0	0	0	0	3	1	2	48	0	2	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	420	22	0	3	2	0	0	0	0	1	5	5	5	3	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	1332.00	1332	1	44	124	0	0	39	0	3	1	4	0	0	0	0	22	37	27	47	27	21	52	29	40	1	0	0	1	2	105	198	43	148	0	32	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	251	2	0	0	1	0	0	0	2	0	0	0	1	2	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	661.00	661	0	1	621	0	0	0	0	0	0	0	0	0	0	0	2	4	2	4	0	0	0	6	3	0	0	0	0	0	3	3	4	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	644.00	644	12	14	176	0	0	9	0	1	0	0	0	0	0	0	31	31	3	28	13	29	20	37	76	2	1	1	1	3	9	11	4	18	0	4	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	69	2	0	2	0	0	0	0	0	3	3	4	12	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	481.00	481	1	8	15	0	0	12	0	1	0	2	0	0	0	0	35	31	23	84	15	22	6	36	66	0	0	0	1	0	13	12	7	29	0	6	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	385.00	385	0	1	4	0	0	0	0	0	0	1	0	0	0	0	50	33	17	50	24	30	0	31	66	0	0	0	1	0	15	10	5	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	369.00	369	1	1	54	0	0	1	0	1	0	0	0	0	0	0	27	22	12	54	16	30	2	29	44	0	1	0	3	2	14	6	5	19	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	218.00	218	3	10	17	0	0	1	0	0	0	0	0	0	0	0	13	9	10	16	11	8	4	12	35	0	0	0	0	0	14	9	5	12	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	195.00	195	0	1	115	0	0	0	0	0	0	3	0	0	0	0	2	3	4	3	4	3	0	8	6	0	0	1	0	0	5	0	1	9	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	140.00	140	0	2	15	1	0	1	0	3	0	1	0	0	0	0	4	4	5	5	9	1	2	7	9	0	1	0	0	0	7	2	0	10	0	8	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT...............................................................................................................................	24	1	135.00	135	0	0	29	0	0	0	0	0	0	0	0	0	0	0	32	6	4	10	14	4	0	7	16	0	0	0	2	0	2	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	124.00	124	0	31	7	0	0	0	0	0	0	0	0	0	0	0	5	7	2	4	6	3	2	4	9	0	0	0	0	0	2	4	1	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	110.00	110	0	1	83	0	0	0	0	0	0	0	0	0	0	0	1	0	3	4	1	0	1	3	4	0	0	0	0	0	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC................................................................................................................................	23	1	99.00	99	0	5	35	0	0	2	0	0	0	0	0	0	0	0	10	5	5	8	4	2	0	3	8	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	0	0	0	0	0	0	3	0	2	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT.................................................................................................................................	22	1	69.00	69	0	0	10	0	0	0	0	0	0	0	0	0	0	0	5	3	5	13	3	2	0	5	3	0	1	0	0	0	1	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	1	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	69.00	69	0	13	10	0	0	3	0	1	0	0	0	0	0	0	2	2	2	4	0	2	0	3	5	0	0	0	0	0	2	0	1	4	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	68.00	68	0	0	7	0	0	1	0	1	0	0	0	0	0	0	3	2	1	9	1	9	2	11	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATC...................................................................................................................................................................................................	25	1	64.00	64	0	0	2	0	0	0	0	0	0	0	0	0	0	0	6	7	2	2	3	6	0	6	16	0	0	0	0	0	2	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCC......................................................................................................................................................................................................	22	1	62.00	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	55.00	55	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	52.00	52	0	1	10	0	0	0	0	0	0	0	0	0	0	0	3	4	3	9	2	3	0	6	3	0	0	0	0	0	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	49.00	49	0	0	14	0	0	1	0	0	0	0	0	0	0	0	5	2	1	2	3	1	0	5	2	0	1	0	0	0	8	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	49.00	49	0	0	44	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GGTTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	23	1	49.00	49	0	1	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTC......................................................................................................................................................................................................	22	1	46.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	41.00	41	0	0	25	0	0	0	0	0	0	0	0	0	0	0	1	1	3	1	1	2	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	38.00	38	1	4	0	0	0	3	0	1	0	3	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	1	1	0	1	0	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	36.00	36	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	10	5	3	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	35.00	35	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	1	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	34.00	34	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTA....................................................................................................................................................................................................	24	1	34.00	34	0	0	2	0	0	0	0	1	0	0	0	0	0	0	5	2	1	4	0	1	0	2	4	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGAC......................................................................................................................................................................................................	22	1	32.00	32	3	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTC....................................................................................................................................................................................................	24	1	32.00	32	0	0	8	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	0	1	0	3	9	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	30.00	30	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	29.00	29	0	0	25	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	28.00	28	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	2	2	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCA....................................................................................................................................................................................................	24	1	27.00	27	0	0	3	0	0	0	0	0	0	0	0	0	0	0	3	3	0	3	1	4	1	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	27.00	27	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	3	0	6	0	3	0	0	4	0	0	0	0	0	2	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTG......................................................................................................................................................................................................	22	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCG......................................................................................................................................................................................................	22	1	24.00	24	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	22	1	24.00	24	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGAA......................................................................................................................................................................................................	22	1	24.00	24	0	2	1	0	0	1	0	1	0	0	0	0	0	0	1	1	0	1	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	23.00	23	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTC................................................................................................................................	22	1	20.00	20	0	2	12	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATCC..................................................................................................................................................................................................	26	1	20.00	20	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	1	0	1	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	19.00	19	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	2	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTGT....................................................................................................................................................................................................	24	1	18.00	18	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACG.........................................................................................................................................................................................................	18	1	18.00	18	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTCT...............................................................................................................................	23	1	17.00	17	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	2	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCA......................................................................................................................................................................................................	22	1	16.00	16	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATT.................................................................................................................................	21	1	15.00	15	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	22	1	15.00	15	0	1	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TAG--AGTG-TGTGTATATTG--A-------------------------------------------AAAAGTGAAA-------TAGTGC---------AAC-----GTATACGAGTCCTGTG----CGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCCTCG-------CATT--CTGCTGG---CT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-ATCAACAAAACCATAA----------------------AAAAGAAAAACCATAAAATCTAAAACACAAATTTGATGCGAATGAAAAATGGGAGAAGGTTAGGGATGGGGGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	3069.00	3069	2982	87
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	1292.00	1292	1004	288
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	316.00	316	312	4
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	266.00	266	266	0
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	108.00	108	108	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	53.00	53	50	3
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	28.00	28	28	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	27.00	27	27	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	26.00	26	23	3
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	24.00	24	24	0
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	21.00	21	20	1
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	9.00	9	8	1
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	8.00	8	8	0
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	6.00	6	6	0
..............................................................................................................................................GTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	5.00	5	5	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	4.00	4	4	0
..............................................................................................................................................GTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	4.00	4	4	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	4.00	4	4	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	3.00	3	3	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	3.00	3	3	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	3.00	3	3	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	3.00	3	2	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	3.00	3	1	2
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	2.00	2	2	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	2.00	2	2	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	2.00	2	2	0
..............................................................................................................................................GTTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	22	1	2.00	2	2	0
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	2.00	2	2	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	2.00	2	2	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC................................................................................................................................	23	1	2.00	2	2	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATG...................................................................................................................................................................................................	25	1	2.00	2	2	0
......................................................................................................................................................................................................................CGTTTTTGCGATCACAAATT.................................................................................................................................	20	1	1.00	1	0	1
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	1.00	1	1	0
......................................................................................................................................................................................................................CGTTTTTGCGATCACAAATTCT...............................................................................................................................	22	1	1.00	1	1	0
......................................................................................................................................................................................................................CGTTTTTGCGATCACAAAT..................................................................................................................................	19	1	1.00	1	1	0
....................................................................................................................................................GACCGACACTAACGGGTA.....................................................................................................................................................................................................	18	1	1.00	1	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCA....................................................................................................................................................................................................	24	1	1.00	1	1	0
..................................................................................................................................................GTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	21	1	1.00	1	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	1.00	1	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAACG..................................................................................................................................................................................................	26	1	1.00	1	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCTG...................................................................................................................................................................................................	25	1	1.00	1	1	0
...................................................................................................................................................TGACCGACACTAACGGGTA.....................................................................................................................................................................................................	19	1	1.00	1	1	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.................................................................................................................................	22	1	1.00	1	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAG...................................................................................................................................................................................................	25	1	1.00	1	1	0
................................................................................................................................................TTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	22	1	1.00	1	1	0
......................................................................................................................................................................GTTAAAGGGCATCCTCG-------CATT--CTGCT..................................................................................................................................................................	26	1	1.00	1	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTACCA..................................................................................................................................................................................................	26	1	1.00	1	1	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	1.00	1	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	1.00	1	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	1.00	1	1	0
..................................................................................................................................................GTGACCGACACTAACGGG.......................................................................................................................................................................................................	18	1	1.00	1	1	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT...............................................................................................................................	24	1	1.00	1	1	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	23	1	1.00	1	1	0

droWil2

TTT--CGTT-TGTGTT-------TTTTTTTT----TTACTGTT--GTTT---TGTGATTATTTT-----------------------------------------------TAATATCC----------TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAA--CA---AAGTCGTT--TTTCTGGCCTTT--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACA-AACACAT---------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	100531.00	100531	28827	4170	1015	229	66290
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	13118.00	13118	3877	3707	59	69	5406
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	6236.00	6236	3983	1253	15	2	983
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	3164.00	3164	2448	4	5	0	707
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	1727.00	1727	748	134	4	1	840
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	1556.00	1556	1296	9	1	2	248
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	1277.00	1277	188	29	12	2	1046
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	673.00	673	35	53	5	2	578
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	591.00	591	28	340	3	1	219
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	551.00	551	156	59	1	0	335
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	384.00	384	70	69	4	6	235
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	366.00	366	2	351	0	0	13
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	249.00	249	140	36	0	0	73
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	148.00	148	12	3	2	1	130
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	147.00	147	100	11	3	1	32
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	86.00	86	8	77	0	0	1
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	80.00	80	2	29	2	0	47
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	74.00	74	42	5	0	0	27
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	44.00	44	13	21	0	0	10
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT.................................................................................................................................	22	1	38.00	38	4	3	0	0	31
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	31.00	31	13	1	0	0	17
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC................................................................................................................................	23	1	31.00	31	23	4	0	0	4
...............................................................................................................................................TTTGTGACCGACACTAACGGAC......................................................................................................................................................................................................	22	1	30.00	30	30	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	29.00	29	20	2	0	0	7
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	26.00	26	1	2	0	0	23
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT...............................................................................................................................	24	1	20.00	20	12	4	0	0	4
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	20.00	20	0	18	0	0	2
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	19.00	19	7	0	0	0	12
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	17.00	17	0	12	0	0	5
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	16.00	16	15	0	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	14.00	14	1	2	0	0	11
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	13.00	13	4	4	0	0	5
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	12.00	12	2	6	0	0	4
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCA....................................................................................................................................................................................................	24	1	11.00	11	0	2	0	0	9
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	11.00	11	0	9	0	0	2
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	11.00	11	0	8	0	0	3
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	10.00	10	0	4	0	0	6
.............................................................................................................................................ATTTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	23	1	10.00	10	4	6	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTGT....................................................................................................................................................................................................	24	1	8.00	8	1	0	0	0	7
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	8.00	8	0	8	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	8.00	8	0	2	0	0	6
................................................................................................................................................TTGTGACCGACACTAACG.........................................................................................................................................................................................................	18	1	7.00	7	0	6	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTACA...................................................................................................................................................................................................	25	1	7.00	7	1	1	0	0	5
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	6.00	6	0	4	0	0	2
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	6.00	6	0	6	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAGT...................................................................................................................................................................................................	25	1	6.00	6	0	2	1	0	3
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	6.00	6	0	2	0	0	4
.............................................................................................................................................ATTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	24	1	5.00	5	3	1	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCC....................................................................................................................................................................................................	24	1	5.00	5	2	0	0	0	3
...............................................................................................................................................TTTGTGACCGACACTAACGGAA......................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	5
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATT.................................................................................................................................	21	1	5.00	5	0	2	0	0	3
................................................................................................................................................TTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	21	1	5.00	5	5	0	0	0	0
..................................................................................................................................................................................A--CA---AAGTCGTT--TTTCTGGCCT.............................................................................................................................................................	21	1	5.00	5	5	0	0	0	0
.....................................................................................................................................................................................CA---AAGTCGTT--TTTCTGGCC..............................................................................................................................................................	19	1	5.00	5	5	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	4.00	4	2	1	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACCC........................................................................................................................................................................................................	20	1	4.00	4	3	0	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	4.00	4	3	1	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	22	1	4.00	4	0	3	0	0	1
.....................................................................................................................................................................................CA---AAGTCGTT--TTTCTGGCCT.............................................................................................................................................................	20	1	4.00	4	4	0	0	0	0
.............................................................................................................................................ATTTTGTGACCGACACTAACG.........................................................................................................................................................................................................	21	1	3.00	3	1	1	0	0	1
..............................................................................................................................................TTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTCT...............................................................................................................................	23	1	3.00	3	0	2	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGTA.......................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	3
...............................................................................................................................................TTTGTGACCGACACTAACGGGCC.....................................................................................................................................................................................................	23	1	3.00	3	1	0	0	0	2
...............................................................................................................................................TTTGTGACCGACACTAACGA........................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	3
......................................................................................................................................................................................................................CGTTTTTGCGATCACAAATTCT...............................................................................................................................	22	1	3.00	3	1	1	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATC...................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	3

dp5

TCC--GTGTGTCTGTG-------------------TGACTGTGTGACCGTGTGGTGGCATTCCCCTGGGA-----CC-------TGGGACCTGGCACCTGGA--A------CCTGGTCC--------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGG---AC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGG-AATGTGTGTGCA----------A-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	76186.00	76186	185	21388	2	9338	8	41522	3297	6	440	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	20543.00	20543	22	11860	4	2311	1	5856	130	1	357	1
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	6897.00	6897	17	4686	0	1089	0	937	40	0	128	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	2550.00	2550	8	62	0	1819	0	641	17	0	3	0
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	2399.00	2399	1	1934	0	125	0	299	33	0	7	0
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	1665.00	1665	7	927	1	330	0	354	19	0	27	0
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	1176.00	1176	0	1100	0	26	0	44	3	0	3	0
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	1123.00	1123	0	485	0	91	0	542	0	0	5	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	860.00	860	0	130	0	14	0	685	15	0	16	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	645.00	645	1	104	0	55	0	462	20	0	3	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	581.00	581	5	171	0	199	0	198	1	0	7	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	493.00	493	0	150	0	32	0	268	18	1	24	0
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	482.00	482	0	471	0	9	0	2	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	233.00	233	0	54	0	8	1	166	1	0	3	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACT...............................................................................................................................	23	1	232.00	232	0	134	0	53	0	42	2	0	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	165.00	165	0	78	0	48	0	35	4	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	142.00	142	1	119	0	8	0	10	3	0	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	107.00	107	2	28	0	16	0	57	3	0	1	0
......................................................................................................................................................................ATGGC-TGGCC---------------------GCAGG---AC--TA.......................................................................................................................................................	19	1	103.00	103	1	98	0	1	0	1	2	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	102.00	102	0	70	0	21	0	8	0	0	3	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	88.00	88	0	81	0	5	0	2	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	85.00	85	1	10	0	8	0	57	9	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	81.00	81	0	77	0	1	0	3	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	49.00	49	0	18	0	10	0	20	0	0	1	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATAC................................................................................................................................	22	1	43.00	43	0	29	0	11	0	3	0	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACA-ATACT...............................................................................................................................	22	1	42.00	42	0	32	0	6	0	4	0	0	0	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	40.00	40	0	29	0	6	0	5	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACG.........................................................................................................................................................................................................	18	1	38.00	38	0	38	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	25.00	25	0	4	0	0	0	20	0	0	1	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATA.................................................................................................................................	21	1	24.00	24	0	16	0	1	0	7	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	24.00	24	0	23	0	1	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	23.00	23	1	14	0	1	0	7	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	22	1	23.00	23	0	17	0	4	0	0	0	0	2	0
................................................................................................................................................TTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	21	1	23.00	23	0	3	0	20	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	22.00	22	0	9	0	6	0	7	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	22.00	22	0	18	0	0	0	4	0	0	0	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	21.00	21	0	20	0	1	0	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	21.00	21	0	16	0	4	0	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGAC......................................................................................................................................................................................................	22	1	20.00	20	0	0	0	19	0	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	19.00	19	0	3	0	2	0	14	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	18.00	18	0	16	0	1	0	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	17.00	17	0	1	0	10	0	6	0	0	0	0
......................................................................................................................................................................ATGGC-TGGCC---------------------GCAGG---AC--T........................................................................................................................................................	18	1	15.00	15	1	12	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACC...............................................................................................................................	23	1	15.00	15	0	1	0	13	0	1	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	14.00	14	0	13	0	0	0	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	13.00	13	0	6	0	6	0	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTC......................................................................................................................................................................................................	22	1	11.00	11	0	0	0	3	0	8	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	11.00	11	0	11	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGGC-TGGCC---------------------GCAGG---AC--TA.......................................................................................................................................................	18	1	10.00	10	0	10	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACA-ATAC................................................................................................................................	21	1	9.00	9	0	8	0	1	0	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGG.......................................................................................................................................................................................................	18	1	8.00	8	0	7	0	1	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTG......................................................................................................................................................................................................	22	1	8.00	8	0	0	0	0	0	8	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	20	1	7.00	7	0	7	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	23	1	7.00	7	0	7	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCC......................................................................................................................................................................................................	22	1	7.00	7	0	0	0	1	0	6	0	0	0	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	22	1	7.00	7	0	7	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	6.00	6	0	0	0	3	0	3	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	6	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	21	1	6.00	6	0	4	0	1	0	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCA......................................................................................................................................................................................................	22	1	5.00	5	0	1	0	0	0	4	0	0	0	0
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	5.00	5	0	3	0	2	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACT.........................................................................................................................................................................................................	19	1	5.00	5	0	3	0	0	0	2	0	0	0	0
...................................................................................................................................................TGACCGACACTAACGGGTA.....................................................................................................................................................................................................	19	1	5.00	5	0	4	0	0	0	1	0	0	0	0
......................................................................................................................................................................ATGGC-TGGCC---------------------GCAGG---AC--TT.......................................................................................................................................................	19	1	4.00	4	0	3	0	0	0	1	0	0	0	0

droPer2

TCC--GTGTGTCTGTG-------------------TGACTGTGTGACCGTGTGGTGGCATTCCCCTGGGA-----CCTGGCACCTGGGACCTGGCACCTGGG--A------CCTGGTCC--------CGTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGG---AC--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGG-AATGTGT---------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	103647.00	103647	28	6610	2	44995	50639	1373
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	17238.00	17238	1	5560	1	7636	3965	75
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	3448.00	3448	8	1576	0	1003	855	6
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	2054.00	2054	3	16	0	691	1336	8
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	1587.00	1587	0	68	0	985	526	8
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	1218.00	1218	0	22	0	506	674	16
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	924.00	924	0	553	1	173	188	9
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	920.00	920	0	83	0	422	409	6
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	707.00	707	0	245	0	238	220	4
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	696.00	696	0	99	0	307	290	0
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	539.00	539	0	491	0	31	17	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	462.00	462	1	28	0	109	321	3
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	329.00	329	0	52	0	152	123	2
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	128.00	128	0	6	0	43	79	0
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	120.00	120	0	119	0	0	1	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACT...............................................................................................................................	23	1	115.00	115	0	48	0	21	45	1
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	97.00	97	0	21	0	36	40	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	92.00	92	0	39	0	29	24	0
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	80.00	80	0	1	0	19	59	1
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	79.00	79	0	36	0	27	16	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	63.00	63	0	4	0	24	35	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTC......................................................................................................................................................................................................	22	1	37.00	37	0	0	0	9	28	0
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	32.00	32	0	29	0	1	2	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	28.00	28	0	2	0	13	12	1
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATAC................................................................................................................................	22	1	25.00	25	0	20	0	1	4	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	23.00	23	0	21	0	2	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	20.00	20	0	0	0	14	6	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCC......................................................................................................................................................................................................	22	1	20.00	20	0	0	0	5	15	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACA-ATACT...............................................................................................................................	22	1	19.00	19	0	12	0	3	4	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	17.00	17	0	0	0	10	7	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	17.00	17	0	2	0	4	11	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	16.00	16	0	3	0	3	10	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTG......................................................................................................................................................................................................	22	1	16.00	16	0	0	0	2	14	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	13.00	13	0	7	0	2	4	0
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	13.00	13	0	13	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATA.................................................................................................................................	21	1	12.00	12	0	3	0	6	3	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	12.00	12	0	0	0	6	6	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	12.00	12	0	1	0	8	3	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	11.00	11	0	7	0	2	2	0
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	10.00	10	0	3	0	2	5	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	9.00	9	0	6	0	0	3	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAT...................................................................................................................................................................................................	25	1	9.00	9	0	0	0	6	3	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	8.00	8	0	1	0	4	3	0
................................................................................................................................................TTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	21	1	8.00	8	0	1	0	3	4	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	8.00	8	0	8	0	0	0	0

droAna3

TAT--ACTTTTAT-----------------T--GT-------TTCGGAGTGAAGTGCCTTTTTTTAAAAA-----AC------------------------------------AGA-----------AATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA-------------------TACAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAAGAAA--ACATTGTATT--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	187009.00	187009	11553	2	6	44408	3515	127525
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	19217.00	19217	7978	0	0	3390	169	7680
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	4206.00	4206	2100	0	0	666	41	1399
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	3038.00	3038	387	0	0	389	26	2236
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	2281.00	2281	106	0	0	660	47	1468
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	1610.00	1610	43	0	0	1127	7	433
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	1484.00	1484	103	0	0	366	16	999
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	1398.00	1398	202	0	1	559	30	606
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	1302.00	1302	177	0	0	606	4	515
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	1251.00	1251	21	0	0	89	4	1137
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	1244.00	1244	1031	0	0	100	8	105
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	806.00	806	133	0	0	268	7	398
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	725.00	725	39	0	0	412	4	270
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	679.00	679	664	0	0	7	0	8
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	433.00	433	5	0	0	99	34	295
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.................................................................................................................................	22	1	240.00	240	10	0	0	8	3	219
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	172.00	172	169	0	0	2	0	1
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	95.00	95	62	0	0	14	0	19
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATT...................................................................................................................................................................................................	25	1	94.00	94	12	0	0	28	4	50
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	88.00	88	9	0	0	58	0	21
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	83.00	83	57	0	0	15	0	11
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	81.00	81	20	0	0	13	0	48
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCCT...............................................................................................................................	24	1	74.00	74	26	0	0	10	2	36
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	71.00	71	1	0	0	22	0	48
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCC................................................................................................................................	23	1	68.00	68	20	0	0	7	0	41
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	37.00	37	6	0	0	6	0	25
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	37.00	37	36	0	0	1	0	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	36.00	36	35	0	0	1	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	32.00	32	5	0	0	6	0	21
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	26.00	26	9	0	0	8	0	9
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	21.00	21	14	0	0	4	0	3
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTA....................................................................................................................................................................................................	24	1	20.00	20	1	0	0	5	0	14
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	19.00	19	1	0	0	9	0	9
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	19.00	19	3	0	0	0	0	16
...............................................................................................................................................TTTGTGACCGACACTAACGGTC......................................................................................................................................................................................................	22	1	18.00	18	0	0	0	16	0	2
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	18.00	18	16	0	0	2	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTG......................................................................................................................................................................................................	22	1	17.00	17	0	0	0	17	0	0
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	16.00	16	1	0	0	8	0	7
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	16.00	16	13	0	0	2	0	1
...............................................................................................................................................TTTGTGACCGACACTAACT.........................................................................................................................................................................................................	19	1	16.00	16	0	0	0	3	0	13
................................................................................................................................................TTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	22	1	15.00	15	15	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGTT.......................................................................................................................................................................................................	21	1	15.00	15	0	0	0	5	0	10
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	15.00	15	1	0	0	13	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGCC......................................................................................................................................................................................................	22	1	14.00	14	0	0	0	14	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCA......................................................................................................................................................................................................	22	1	13.00	13	0	0	0	9	0	4
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCCTT..............................................................................................................................	25	1	12.00	12	4	0	0	0	0	8
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	12.00	12	5	0	0	0	1	6
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAAT..................................................................................................................................	21	1	11.00	11	0	0	0	0	0	11
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	11.00	11	7	0	0	0	0	4
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTG....................................................................................................................................................................................................	24	1	10.00	10	3	0	0	1	0	6
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	9.00	9	9	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGAA......................................................................................................................................................................................................	22	1	8.00	8	1	0	0	3	0	4
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	8.00	8	8	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACG.........................................................................................................................................................................................................	18	1	8.00	8	8	0	0	0	0	0

droBip1

TAC--GGAG-TGA------------A----GTGTT-----------TTT----------------------------------------------------------GAAGACAGA------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGATT-------------------TACAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAAAATA--A----------------------AA-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAT--ATATATATATATAGTG--GAAAT---------------------------------------------------------AGTAA---------AAAGTT------CC-TATCCTTTTTTAACGTGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTC-T----TAGCCGTT--CCGCTGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAG-AGCAGC---------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTT--GCCC-AGGCT-----A--AAGCCAGTG-------------ATC-----------------------------------------A---------GGAGTT------CC-TATCC--------TGTGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCC-AA---AAGCCGCCCACCGCAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAG-AGCAGCAA-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAC--CTCA-TG-GT-----G--CTTCTGGTG-------------ATC-----------------------------------------A---------AGAGTT------CCGAATCC--------TGTGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC-------------------CGCAGG---AT--TACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAA-AGCAACAAAA-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATCAGCCC-ATGGT-----G--CAGCTAGTG-------------ATC-----------------------------------------A---------AGAGTT------CCAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCTC-------------------CGCAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCAAAA-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCA--CCTC---------------------------------------C----------------------------------------------------------AAACCCACATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCC-AG---GAGCCGCC--CCTCAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAA------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTC--CGAAACACCTCAAATGGAAAACAAGTT-------------ACC-----------------------------------------A---------AGAGTTCCGAATCCGAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCC-AA---AAGCCGCC--CCGCAGG---AT--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAAA-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAC--C-TC-AGGGT-----C--CAACTAATT-------------ATC-----------------------------------------A---------AGAGTT------CCAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTA---AAAGGAGCCGCT--CACCAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCTAAA-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGC--ATTTTAAT------TTTAATAT-TGGTAGT-----------TTT----------------------------------------------------------GGTGACGAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CTCAACGAAATTG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	776433.00	776433	0	0	0	0	122	9	0	0	0	0	0	0	0	0	97	5	1	401	40	0	1	27	140	2845	0	57	4	27	379	279	14354	10338	37	34	0	90	203	39	19	39	40	36	98	13	137	26	20	32	52	28	58	21	38	0	0	0	100	96	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	467	13	0	0	0	0	0	0	0	11	0	831	1	3	797	148	831	1	0	2	7	5207	73	0	1	9	0	11	22	37	0	9	0	2	114	2077	16764	37825	162	5903	100	10836	10822	63902	902	8697	731	8378	9825	0	0	2	7	22	16	10	12	18	0	0	1	0	0	0	14	21	18	14	21	1328	9	22	15	47	0	0	0	0	0	3	5	2	0	28	7	22283	27900	0	19465	47	29	19669	12095	315	15737	435	18755	70	27863	1390	84	4	26	1	0	63335	2947	111	2831	54	0	3	3	1965	2	2600	13	0	0	0	0	0	116	187	0	0	3	2	0	0	0	1	0	378	2793	2292	1691	113	209	298	477	324	445	50	621	1	0	0	1	5	2	0	0	5	1	2	2470	21863	535	1	0	31	8769	24810	28	4860	6	3	11	2	7	8857	7	23	0	1	3	2	1	1	34	6	3	3	0	134	62	544	2400	172	806	186	979	147	989	0	2	1	2	45	31335	38406	28820	44985	10	10	1622	655	11	651	178	519	65	122	5168	1	4823	8267	26	171	48	257	554	4	5	0	0	0	1	0	2	0	1	1	3579	43721	5078	1435	3861	2387	3173	15	0	24	2	3	11
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	375656.00	375656	0	0	0	0	310	40	0	0	0	0	3	0	1	1	567	10	0	160	76	0	2	13	37	2413	0	4	0	22	415	363	11990	9624	44	34	0	10	23	7	4	7	4	8	6	4	11	4	2	2	3	5	10	7	8	0	0	0	191	280	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	486	19	0	1	6	0	0	0	0	54	2	1444	16	2	2211	346	1605	2	0	35	33	7067	133	5	3	35	6	30	40	92	1	17	3	9	237	728	16331	14215	173	5915	65	7049	7018	42471	539	6876	657	6747	8008	0	0	0	0	13	18	19	26	20	0	0	0	0	0	0	2	7	1	4	2	206	5	0	7	5	0	0	0	0	0	0	0	0	0	1	0	22489	29756	0	18728	61	29	10605	13881	473	15685	527	14502	131	16400	1930	12	0	3	0	0	33476	495	29	533	21	1	0	0	324	3	447	6	0	0	0	0	0	41	51	0	0	0	0	0	0	0	0	0	171	1308	499	305	124	240	231	452	361	505	105	570	0	0	0	0	58	39	0	0	3	1	0	454	1696	38	1	1	8	2720	5819	4	1176	0	0	2	1	0	1103	1	4	0	1	0	0	0	0	6	1	2	2	0	53	10	45	180	12	32	23	79	16	87	0	0	0	0	5	1842	3507	2514	3813	1	1	365	200	1	66	31	62	11	18	317	0	499	807	27	18	3	42	87	1	0	0	0	0	0	0	0	0	0	0	303	3164	216	98	235	163	210	0	0	1	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	71134.00	71134	0	0	0	0	124	4	0	0	0	0	0	0	0	0	119	6	0	3	18	0	0	2	0	6	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	2	0	0	4	0	0	0	0	2	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	154	11	0	0	0	0	0	0	0	1	1	328	1	1	964	67	288	0	0	0	5	2153	17	0	0	17	6	8	11	20	0	0	1	4	46	35	3805	838	12	272	3	536	363	2117	31	1871	126	1708	2039	0	0	0	0	1	2	0	5	1	0	0	0	0	0	0	1	1	2	1	0	49	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	7087	8727	0	4906	4	8	1624	2885	56	3173	40	4134	6	5885	130	17	0	0	0	0	4851	386	3	218	0	0	0	0	139	2	159	0	0	0	0	0	0	5	10	0	0	0	1	0	0	0	0	0	13	167	109	50	5	23	27	41	20	48	11	40	0	0	0	0	25	21	0	0	1	0	0	51	291	14	0	0	0	158	527	1	75	0	0	0	0	0	179	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	7	34	8	14	2	19	6	29	0	0	0	0	2	1060	1383	1287	1451	0	0	94	33	0	17	6	11	1	1	108	0	44	87	1	0	0	6	6	0	0	0	0	1	0	0	0	0	0	0	45	622	41	14	61	18	30	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	66369.00	66369	0	0	0	0	31	2	0	0	0	0	0	0	0	0	115	22	30	99	9	0	0	0	1	1916	0	0	0	7	82	54	2665	1691	23	10	0	3	2	1	0	0	0	0	4	0	5	2	0	0	0	1	0	1	0	0	0	0	40	93	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	104	1	0	0	0	0	0	0	0	0	0	110	0	0	272	17	76	0	0	0	1	792	8	0	0	4	0	1	1	4	0	1	1	0	8	64	3565	898	47	167	4	1131	397	1590	31	1727	297	1092	1846	1	2	2	4	0	4	2	0	5	2	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	4096	4848	0	2936	17	8	2942	2017	60	2935	92	4352	19	5508	372	0	0	0	0	0	9103	60	0	39	0	0	0	0	34	0	27	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	17	37	41	19	3	8	23	51	19	18	5	26	1	0	0	1	5	3	0	0	0	0	0	30	286	11	0	0	0	330	1410	2	179	0	0	1	0	0	122	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	8	0	3	0	7	2	6	0	0	0	0	0	345	363	326	890	1	0	19	9	0	11	0	3	1	0	44	0	46	92	0	0	1	5	4	0	0	0	0	0	0	0	0	0	0	0	23	726	43	12	20	10	16	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	49656.00	49656	0	0	0	0	124	5	0	0	0	0	0	0	0	0	32	2	0	10	34	0	1	1	1	3	0	0	0	4	36	53	2507	2144	9	5	0	1	8	0	0	0	0	1	0	1	3	0	0	0	0	1	0	0	0	0	0	0	299	246	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	153	8	0	0	6	0	1	0	0	5	1	365	0	0	1118	43	205	0	0	0	7	2013	13	0	0	10	0	20	7	15	0	1	1	2	36	12	2218	208	23	234	2	292	158	901	11	1168	147	976	1201	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4128	5211	0	3304	8	4	1042	2491	58	2730	41	2092	2	3256	123	0	0	0	0	0	2948	136	2	49	0	2	0	0	51	0	46	0	0	0	0	0	0	7	4	0	0	0	0	0	19	0	0	0	16	115	34	15	5	5	6	7	6	8	2	12	0	0	0	0	37	26	0	0	0	0	0	37	204	6	0	0	0	259	489	1	82	0	0	0	0	0	148	0	1	0	0	0	0	0	0	1	0	0	0	0	3	1	3	31	3	10	4	13	2	15	0	0	0	0	0	482	743	548	690	0	0	40	14	0	10	7	4	0	0	35	0	23	56	1	2	0	4	5	0	0	0	0	0	0	0	0	0	0	0	27	328	23	10	28	10	13	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	11980.00	11980	0	0	0	0	7	0	0	0	0	0	0	0	0	0	2	3	108	46	0	0	0	0	0	123	0	0	0	0	1	0	8	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	12	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	11	0	0	18	2	5	0	0	0	0	174	1	0	0	0	0	0	2	0	0	0	0	0	0	3	984	84	13	15	0	187	26	76	2	396	269	283	384	8	0	2	2	0	0	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	761	1163	0	546	2	6	230	386	16	594	63	660	5	679	43	0	0	0	0	0	793	6	0	10	0	0	0	0	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	3	1	0	0	7	1	1	0	4	0	0	0	0	4	0	0	0	0	0	0	1	76	3	0	0	0	74	733	2	59	0	0	0	0	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	1	1	0	1	0	0	0	0	2	189	194	251	411	0	0	7	1	1	2	0	1	0	0	2	0	2	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	10	585	22	2	4	5	6	0	0	1	0	0	0
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...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	563.00	563	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	5	48	10	6	13	3	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	1	3	0	2	3	9	1	16	47	16	13	0	0	8	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	29	0	11	10	5	17	16	11	7	52	32	0	9	28	0	0	0	0	0	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTGT....................................................................................................................................................................................................	24	1	524.00	524	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	14	0	0	7	0	1	0	0	0	0	13	2	0	0	0	0	0	0	0	0	0	0	0	0	2	21	6	0	2	0	1	1	6	0	1	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	76	94	0	57	0	0	6	4	0	9	0	23	0	24	0	0	0	0	0	0	20	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	4	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	7	5	8	6	0	0	0	0	0	0	0	0	0	0	1	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	56	5	1	0	1	3	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	463.00	463	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	7	0	2	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	11	0	10	0	9	9	63	1	5	5	8	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	45	0	17	0	0	8	18	0	18	0	33	1	39	8	0	0	0	0	0	34	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	6	3	0	0	0	0	0	0	1	0	0	0	0	3	7	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	2	4	9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTAT...............................................................................................................................	24	1	344.00	344	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	5	0	0	15	1	3	0	0	1	0	20	0	0	0	0	0	0	0	1	0	0	0	0	0	0	6	1	0	0	0	4	0	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	34	0	57	0	0	1	11	6	9	30	12	10	6	21	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	343.00	343	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	1	0	0	0	12	1	7	0	3	1	7	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	24	0	9	0	0	9	13	1	19	1	29	0	17	0	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	2	14	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	2	3	11	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	313.00	313	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	7	0	2	0	0	1	1	0	12	0	11	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	76	58	0	39	0	0	2	3	0	1	0	13	0	13	3	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	3	12	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	301.00	301	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	8	0	1	0	2	0	12	1	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	9	12	0	11	0	0	16	21	0	26	2	4	0	2	0	0	0	0	0	0	49	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	6	6	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	11	9	18	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	14	2	0	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................ATTGTTTGGCCGC--------------------CAGG---AT--TA.......................................................................................................................................................	21	1	278.00	278	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	1	1	1	0	6	0	1	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	14	0	15	2	0	3	29	2	10	11	10	10	30	50	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	233.00	233	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	1	0	1	0	0	1	5	0	8	0	3	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	46	0	22	0	0	7	5	0	7	0	6	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	232.00	232	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	0	1	0	2	4	19	0	5	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	14	0	2	0	0	2	35	1	56	3	2	0	1	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	6	13	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATG--TTAA-TAT---------------TGTTAGT-----------TTT----------------------------------------------------------AGTGACAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCAC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAA------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	93609.00	93609	79046	5456	160	2767	0	0	5069	732	21	6	153	7	0	192	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	18599.00	18599	13112	608	25	2274	0	0	1889	290	23	20	58	6	3	291	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	10178.00	10178	9674	482	13	6	0	0	3	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	8557.00	8557	7169	492	21	305	0	0	468	44	2	0	6	0	0	50	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	4327.00	4327	3959	343	7	5	0	0	11	1	0	0	0	0	0	1	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	2458.00	2458	2225	81	6	31	0	0	80	20	0	0	0	0	0	15	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	997.00	997	897	60	3	20	0	0	11	0	0	0	1	0	0	5	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	738.00	738	606	15	0	32	0	0	22	4	1	0	6	0	0	52	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	583.00	583	465	37	1	20	0	0	50	9	0	0	0	0	0	1	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	577.00	577	543	15	0	14	0	0	2	1	0	0	1	0	0	1	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	329.00	329	97	5	0	224	0	0	3	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	312.00	312	151	5	0	56	0	0	50	16	1	0	3	0	0	30	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	174.00	174	12	1	0	158	0	0	2	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGAC......................................................................................................................................................................................................	22	1	170.00	170	166	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	160.00	160	136	5	0	13	0	0	1	2	0	0	1	0	0	2	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	142.00	142	134	3	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	106.00	106	104	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	89.00	89	82	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	84.00	84	79	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	74.00	74	70	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	61.00	61	53	1	0	4	0	0	2	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.................................................................................................................................	22	1	57.00	57	44	1	0	10	0	0	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	53.00	53	49	0	1	0	0	0	2	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	52.00	52	47	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATTGTTTGGTCAC--------------------CAGG---AT--T........................................................................................................................................................	20	1	47.00	47	39	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	42.00	42	35	2	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATTGTTTGGTCAC--------------------CAGG---AT--TA.......................................................................................................................................................	21	1	34.00	34	29	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	29.00	29	3	1	0	24	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	27.00	27	14	1	0	11	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	21	1	21.00	21	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	18.00	18	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	16.00	16	15	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	15.00	15	6	1	0	2	0	0	2	0	0	0	1	0	0	3	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	21	1	14.00	14	9	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	13.00	13	2	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAC...................................................................................................................................................................................................	25	1	13.00	13	12	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATG...................................................................................................................................................................................................	25	1	13.00	13	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGAT.....................................................................................................................................................................................................	23	1	11.00	11	10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTACA...................................................................................................................................................................................................	25	1	9.00	9	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATC...................................................................................................................................................................................................	25	1	8.00	8	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGC........................................................................................................................................................................................................	20	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACT.........................................................................................................................................................................................................	19	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA................................................................................................................................	23	1	7.00	7	1	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	7.00	7	2	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAT...................................................................................................................................................................................................	25	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGGT.....................................................................................................................................................................................................	23	1	5.00	5	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGCC.......................................................................................................................................................................................................	21	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATTGTTTGGTCAC--------------------CAGG---AT--.........................................................................................................................................................	19	1	5.00	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGA........................................................................................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTACC...................................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	4.00	4	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	4.00	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	3.00	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTAT.....................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACG.........................................................................................................................................................................................................	18	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATC.................................................................................................................................	21	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA.....................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCC....................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGACCGACACTAACGGGTA.....................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TAA--TAT--------------------TGTTAGT-----------TTT----------------------------------------------------------AGTGACAAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAATAT---------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	150177.00	150177	16190	11661	141	122185
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	29058.00	29058	16403	666	22	11967
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	2414.00	2414	1568	34	3	809
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	2220.00	2220	604	210	3	1403
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	1832.00	1832	108	152	0	1572
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	1776.00	1776	295	75	5	1401
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	1569.00	1569	1151	23	0	395
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	1166.00	1166	1128	0	0	38
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	754.00	754	165	25	1	563
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	689.00	689	36	52	0	601
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	612.00	612	315	26	0	271
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	482.00	482	59	0	0	423
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	333.00	333	68	6	1	258
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	291.00	291	29	19	0	243
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	166.00	166	137	1	0	28
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	132.00	132	65	4	0	63
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	131.00	131	30	20	0	81
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.................................................................................................................................	22	1	126.00	126	47	1	0	78
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	107.00	107	106	0	0	1
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA................................................................................................................................	23	1	84.00	84	32	0	1	51
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	83.00	83	17	10	0	56
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	72.00	72	66	1	0	5
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	51.00	51	45	2	0	4
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	48.00	48	34	0	0	14
...............................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA.....................................................................................................................................	21	1	43.00	43	26	0	0	17
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	39.00	39	19	1	0	19
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	38.00	38	4	3	0	31
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	38.00	38	17	1	0	20
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATCA................................................................................................................................	22	1	35.00	35	17	0	0	18
................................................................................................................................................TTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	21	1	35.00	35	35	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	32.00	32	26	0	0	6
......................................................................................................................................................................ATTGTTTGATCAC--------------------CAGG---AT--TA.......................................................................................................................................................	21	1	31.00	31	8	5	0	18
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT...............................................................................................................................	24	1	30.00	30	25	1	1	3
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	23.00	23	7	0	0	16
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	22.00	22	15	1	0	6
................................................................................................................................................TTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	22	1	21.00	21	20	0	0	1
......................................................................................................................................................................ATTGTTTGATCAC--------------------CAGG---AT--T........................................................................................................................................................	20	1	20.00	20	0	2	0	18
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	18.00	18	2	0	0	16
...............................................................................................................................................TTTGTGACCGACACTAACGGGTGT....................................................................................................................................................................................................	24	1	17.00	17	0	2	0	15
...............................................................................................................................................TTTGTGACCGACACTAACGTA.......................................................................................................................................................................................................	21	1	17.00	17	10	0	0	7
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	16.00	16	3	0	0	13
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAAT..................................................................................................................................	21	1	13.00	13	5	0	0	8
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	13.00	13	7	0	0	6
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAT...................................................................................................................................................................................................	25	1	12.00	12	1	0	0	11
...............................................................................................................................................................................................................T--TACTCGTTTTTGCGATCAC......................................................................................................................................	20	1	11.00	11	3	0	0	8
..............................................................................................................................................TTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	11.00	11	11	0	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATC.................................................................................................................................	21	1	10.00	10	6	0	0	4
................................................................................................................................................TTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	23	1	10.00	10	10	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGAA......................................................................................................................................................................................................	22	1	9.00	9	1	0	0	8
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATCAT...............................................................................................................................	23	1	9.00	9	9	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	8.00	8	8	0	0	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	8.00	8	6	0	0	2
................................................................................................................................................TTGTGACCGACACTAACG.........................................................................................................................................................................................................	18	1	8.00	8	7	0	0	1
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	7.00	7	6	0	0	1
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	7.00	7	6	0	0	1
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	7.00	7	6	0	0	1
...............................................................................................................................................TTTGTGACCGACACTAACGGTAT.....................................................................................................................................................................................................	23	1	7.00	7	4	1	0	2
...............................................................................................................................................TTTGTGACCGACACTAACGGGTACA...................................................................................................................................................................................................	25	1	6.00	6	1	0	0	5
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAC...................................................................................................................................................................................................	25	1	5.00	5	1	0	0	4
.................................................................................................................................TGTTGCAGTTTCGTTTTGTGA.....................................................................................................................................................................................................................	21	1	5.00	5	0	1	0	4
...............................................................................................................................................TTTGTGACCGACACTAAC..........................................................................................................................................................................................................	18	1	5.00	5	5	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATC...................................................................................................................................................................................................	25	1	5.00	5	1	1	0	3
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAATT..................................................................................................................................................................................................	26	1	5.00	5	1	0	0	4
.................................................................................................................................................TGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	22	1	4.00	4	3	1	0	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAAT..................................................................................................................................	20	1	4.00	4	2	0	0	2
.............................................................................................................................................GTTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	24	1	4.00	4	4	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	4.00	4	1	0	0	3
...............................................................................................................................................TTTGTGACCGACACTAACGGGTACC...................................................................................................................................................................................................	25	1	3.00	3	2	0	0	1
.................................................................................................................................................TGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	22	1	3.00	3	1	0	0	2

droYak3

TAA--GTGCAGCTA---------------G-----TTAGTGTTTGATTT----------------------------------------------------------TATGCCGAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAA------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	116498.00	116498	10510	7685	8	0	38010	58968	1284	0	0	0	33
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	20989.00	20989	1800	8231	1	1	4346	6507	103	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	3174.00	3174	1063	977	0	0	467	657	10	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	2970.00	2970	90	170	0	0	1055	1637	18	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	2740.00	2740	1433	27	0	0	209	1061	10	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	1773.00	1773	31	120	0	0	614	1002	6	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	1335.00	1335	58	43	0	0	451	772	11	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	1243.00	1243	625	33	0	0	178	406	1	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	951.00	951	22	720	0	0	67	138	4	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	886.00	886	72	145	0	0	293	376	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	742.00	742	6	714	0	0	7	15	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	668.00	668	195	215	0	0	92	159	7	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	375.00	375	97	26	0	0	65	185	2	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	230.00	230	2	8	0	0	32	187	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	174.00	174	22	58	0	0	32	62	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	167.00	167	43	24	0	0	38	62	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	97.00	97	1	94	0	0	1	1	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	80.00	80	11	6	0	0	20	40	3	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	67.00	67	3	3	0	0	22	38	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	66.00	66	5	1	0	0	19	39	2	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	58.00	58	1	1	0	0	16	40	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	56.00	56	14	6	0	0	13	23	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	49.00	49	2	30	0	0	8	9	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	48.00	48	0	0	0	0	7	41	0	0	0	0	0
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	38.00	38	0	36	0	0	2	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTC......................................................................................................................................................................................................	22	1	34.00	34	0	0	0	0	4	30	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA................................................................................................................................	23	1	33.00	33	0	24	0	0	1	8	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGAC......................................................................................................................................................................................................	22	1	32.00	32	24	0	0	0	0	8	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAT...................................................................................................................................................................................................	25	1	31.00	31	0	3	0	0	12	16	0	0	0	0	0
......................................................................................................................................................................ATTGTTTGGTCGC--------------------CAGG---AT--TA.......................................................................................................................................................	21	1	29.00	29	20	7	0	0	2	0	0	0	0	0	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	27.00	27	1	23	0	0	1	2	0	0	0	0	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	24.00	24	0	24	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGCT.....................................................................................................................................................................................................	23	1	22.00	22	1	0	0	0	10	11	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	22.00	22	0	22	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.................................................................................................................................	22	1	20.00	20	2	15	0	0	0	3	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTG......................................................................................................................................................................................................	22	1	18.00	18	0	0	0	0	2	16	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	18.00	18	5	0	0	0	7	6	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	17.00	17	1	9	0	0	3	4	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	17.00	17	0	12	0	0	1	4	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT...............................................................................................................................	24	1	17.00	17	0	15	0	0	0	2	0	0	0	0	0
......................................................................................................................................................................ATTGTTTGGTCGC--------------------CAGG---AT--T........................................................................................................................................................	20	1	15.00	15	13	1	0	0	0	1	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	15.00	15	1	1	0	0	0	13	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTGT....................................................................................................................................................................................................	24	1	13.00	13	3	0	0	0	2	8	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	13.00	13	1	9	0	0	0	3	0	0	0	0	0
...............................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA.....................................................................................................................................	21	1	10.00	10	1	2	0	0	3	4	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGCC.....................................................................................................................................................................................................	23	1	10.00	10	0	0	0	0	1	9	0	0	0	0	0
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	10.00	10	0	10	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	10.00	10	0	0	0	0	4	4	2	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGC.......................................................................................................................................................................................................	21	1	9.00	9	3	0	0	0	3	3	0	0	0	0	0

droEre2

TAA--GTGCAGCTG---------------G-----TTAGTGCTTGATTT----------------------------------------------------------TATGGCCAATCC--------TGTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGG---AT--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACGAAGTCGTGA----------------------AG-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................TTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	22	1	251324.00	251324	34993	4	54131	4	21587	140603	2
...............................................................................................................................................TTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	23	1	68279.00	68279	32830	0	12598	0	1648	21142	61
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	24	1	6945.00	6945	612	0	2696	1	175	3457	4
...............................................................................................................................................TTTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	21	1	6922.00	6922	4519	1	597	0	124	1681	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	24	1	4389.00	4389	731	0	1364	0	320	1974	0
................................................................................................................................................TTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	21	1	3321.00	3321	2589	0	137	0	31	564	0
................................................................................................................................................TTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	22	1	2559.00	2559	2453	0	30	0	2	74	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	22	1	2112.00	2112	213	0	494	0	236	1169	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGC......................................................................................................................................................................................................	22	1	1552.00	1552	67	0	536	0	118	831	0
...............................................................................................................................................TTTGTGACCGACACTAACGG........................................................................................................................................................................................................	20	1	1358.00	1358	285	0	109	0	38	926	0
...............................................................................................................................................TTTGTGACCGACACTAACG.........................................................................................................................................................................................................	19	1	984.00	984	116	0	130	0	21	717	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	22	1	869.00	869	62	0	232	0	73	502	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	23	1	840.00	840	246	0	204	0	25	356	9
...............................................................................................................................................TTTGTGACCGACACTAACGGGTC.....................................................................................................................................................................................................	23	1	452.00	452	34	0	159	0	2	257	0
...............................................................................................................................................TTTGTGACCGACACTAACGGT.......................................................................................................................................................................................................	21	1	429.00	429	98	0	17	0	24	290	0
................................................................................................................................................TTGTGACCGACACTAACGGG.......................................................................................................................................................................................................	20	1	373.00	373	369	0	0	0	0	4	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	24	1	304.00	304	185	0	74	0	3	42	0
.................................................................................................................................................TGTGACCGACACTAACGGGT......................................................................................................................................................................................................	20	1	252.00	252	160	0	15	0	2	75	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAG....................................................................................................................................................................................................	24	1	238.00	238	86	0	27	0	7	118	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTG.....................................................................................................................................................................................................	23	1	199.00	199	27	0	27	0	0	145	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAA...................................................................................................................................................................................................	25	1	186.00	186	12	0	46	0	6	122	0
.................................................................................................................................................TGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	21	1	138.00	138	123	0	5	0	1	9	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTTT....................................................................................................................................................................................................	24	1	126.00	126	34	0	10	0	19	63	0
...............................................................................................................................................TTTGTGACCGACACTAACGT........................................................................................................................................................................................................	20	1	123.00	123	24	0	10	0	12	77	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC.................................................................................................................................	22	1	101.00	101	28	0	7	0	8	58	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA................................................................................................................................	23	1	86.00	86	28	0	3	0	1	54	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAA....................................................................................................................................................................................................	23	1	82.00	82	40	0	12	0	0	30	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTA......................................................................................................................................................................................................	22	1	81.00	81	42	0	7	0	1	31	0
................................................................................................................................................TTGTGACCGACACTAACGGGG......................................................................................................................................................................................................	21	1	81.00	81	77	0	1	0	0	3	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAT...................................................................................................................................................................................................	25	1	80.00	80	6	0	29	1	3	41	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAT....................................................................................................................................................................................................	23	1	60.00	60	55	0	2	0	0	3	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGT......................................................................................................................................................................................................	23	1	50.00	50	38	0	1	0	1	10	0
..............................................................................................................................................TTTTGTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	24	1	49.00	49	48	0	1	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTCT....................................................................................................................................................................................................	24	1	46.00	46	0	0	12	0	0	34	0
...............................................................................................................................................TTTGTGACCGACACTAACGTA.......................................................................................................................................................................................................	21	1	37.00	37	26	0	0	0	0	11	0
...................................................................................................................................................TGACCGACACTAACGGGT......................................................................................................................................................................................................	18	1	31.00	31	10	0	0	0	2	19	0
...............................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA.....................................................................................................................................	21	1	27.00	27	9	0	12	0	0	6	0
................................................................................................................................................TTGTGACCGACACTAACGG........................................................................................................................................................................................................	19	1	26.00	26	25	0	0	0	0	1	0
...............................................................................................................................................TTTGTGACCGACACTAACGGA.......................................................................................................................................................................................................	21	1	24.00	24	4	0	10	0	0	10	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATA...................................................................................................................................................................................................	25	1	23.00	23	3	0	1	0	3	16	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTGT....................................................................................................................................................................................................	24	1	23.00	23	0	0	5	0	1	17	0
.....................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATC.................................................................................................................................	21	1	22.00	22	16	0	0	0	1	5	0
................................................................................................................................................TTGTGACCGACACTAACGGGA......................................................................................................................................................................................................	21	1	21.00	21	15	0	1	0	0	5	0
.................................................................................................................................................TGTGACCGACACTAACGGG.......................................................................................................................................................................................................	19	1	21.00	21	21	0	0	0	0	0	0
....................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT...............................................................................................................................	24	1	21.00	21	11	0	0	0	1	9	0
..................................................................................................................................................GTGACCGACACTAACGGGTA.....................................................................................................................................................................................................	20	1	18.00	18	15	0	0	0	1	2	0
................................................................................................................................................TTGTGACCGACACTAACGGGTT.....................................................................................................................................................................................................	22	1	16.00	16	16	0	0	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGTC......................................................................................................................................................................................................	22	1	15.00	15	1	0	14	0	0	0	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTACA...................................................................................................................................................................................................	25	1	14.00	14	5	0	2	0	0	7	0
..................................................................................................................................................GTGACCGACACTAACGGGT......................................................................................................................................................................................................	19	1	14.00	14	6	0	3	0	0	5	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTATC...................................................................................................................................................................................................	25	1	13.00	13	0	0	4	0	1	8	0
................................................................................................................................................TTGTGACCGACACTAACGGGTAC....................................................................................................................................................................................................	23	1	12.00	12	12	0	0	0	0	0	0
................................................................................................................................................TTGTGACCGACACTAACG.........................................................................................................................................................................................................	18	1	12.00	12	9	0	0	0	0	3	0
...............................................................................................................................................TTTGTGACCGACACTAACGGGTAAG...................................................................................................................................................................................................	25	1	11.00	11	2	0	4	0	0	5	0
...............................................................................................................................................TTTGTGACCGACACTAACGGCA......................................................................................................................................................................................................	22	1	11.00	11	0	0	11	0	0	0	0

dmo-mir-274

scaffold_6680:18485494-18485580 +

Known

Unknown

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.2	-41.9	-41.6