ID:

dmo-mir-13a

 Coordinate:

scaffold_6540:10568354-10568427 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.9 -33.7 -33.5

Flybase annnotation

pre_miRNA [Dmoj\mir-13a-RM]; utr3 [utr3_minus_7789]; miRNA [Dmoj\miR-13a-RA]

No Repeatable elements found

Sense Strand Reads

TTTGCATCTCATTATATGGGACACTTAACGATCTCCGCCCATTCAATTCTTGCGTAACTCTTCAAGGGGTTGTGAAATGTAGCCATTATCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAATTGCTTTCAGCATTGTCCCATCCGTTTTGTGTCACTGGATTATCCA

******************************************.((((((..(((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).)))..))))))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 V056

head

 V049

head

 M046

female body

 V110

male body
................................................................................................TATCACAGCCATTTTGATGAGTT....................................................... 23 0 1 190549.00 190549 163827 11554 7518 4145 2936 569
................................................................................................TATCACAGCCATTTTGATGAGT........................................................ 22 0 1 17075.00 17075 11853 934 1721 1070 1352 145
................................................................................................TATCACAGCCATTTTGATGAGTC....................................................... 23 1 1 9237.00 9237 9207 16 1 6 7 0
................................................................................................TATTACAGCCATTTTGATGAGTT....................................................... 23 1 1 6147.00 6147 6132 9 3 3 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 5825.00 5825 5801 5 9 9 1 0
................................................................................................TACCACAGCCATTTTGATGAGTT....................................................... 23 1 1 4880.00 4880 4847 13 13 5 2 0
...............................................................................................CTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 3224.00 3224 3177 22 8 7 10 0
................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................... 24 0 1 3042.00 3042 2490 82 264 122 59 25
.................................................................................................ATCACAGCCATTTTGATGAGTT....................................................... 22 0 1 2246.00 2246 1948 5 3 1 289 0
................................................................................................TATCACAGCCATTTTGATGAGC........................................................ 22 1 1 1724.00 1724 1706 4 11 2 1 0
................................................................................................TATCACAGCCCTTTTGATGAGTT....................................................... 23 1 1 1383.00 1383 1262 64 5 52 0 0
................................................................................................TTTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 1248.00 1248 1244 1 1 2 0 0
.........................................................CTCTTCAAGGGGTTGTGAAATG............................................................................................... 22 0 1 999.00 999 537 436 12 6 5 3
................................................................................................TATCACAGCCATTTTGATGAGCT....................................................... 23 1 1 889.00 889 751 69 40 26 2 1
................................................................................................TATCACAGCCATTTTGATGAG......................................................... 21 0 1 795.00 795 381 28 120 90 160 16
................................................................................................CATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 665.00 665 636 11 8 9 1 0
................................................................................................GATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 622.00 622 614 5 2 1 0 0
...............................................................................................CGATCACAGCCATTTTGATGAGTT....................................................... 24 2 1 553.00 553 552 0 0 1 0 0
................................................................................................TATCACAGCCATTTTGATGTGTT....................................................... 23 1 1 468.00 468 406 21 28 13 0 0
................................................................................................TGTCACAGCCATTTTGATGAGT........................................................ 22 1 1 437.00 437 436 0 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................... 24 1 1 423.00 423 381 14 4 5 13 6
................................................................................................TATCACAGCCATTTTGATGATTT....................................................... 23 1 1 422.00 422 368 7 25 20 1 1
................................................................................................TATTACAGCCATTTTGATGAGT........................................................ 22 1 1 416.00 416 415 1 0 0 0 0
................................................................................................AATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 384.00 384 375 6 1 2 0 0
................................................................................................TATCACAGACATTTTGATGAGTT....................................................... 23 1 1 371.00 371 283 69 11 8 0 0
..................................................................................................TCACAGCCATTTTGATGAGTT....................................................... 21 0 1 362.00 362 345 9 2 1 5 0
................................................................................................TATCACAGCCATTTTGATTAGTT....................................................... 23 1 1 360.00 360 255 18 15 70 2 0
....................................................................................................ACAGCCATTTTGATGAGTT....................................................... 19 0 1 351.00 351 115 92 95 47 2 0
................................................................................................TACCACAGCCATTTTGATGAGT........................................................ 22 1 1 341.00 341 335 0 1 1 4 0
................................................................................................TATTACAGCCATTTTGATGAGTC....................................................... 23 2 1 328.00 328 328 0 0 0 0 0
.................................................................................................AGCACAGCCATTTTGATGAGTT....................................................... 22 1 1 318.00 318 318 0 0 0 0 0
................................................................................................TATCTCAGCCATTTTGATGAGTT....................................................... 23 1 1 306.00 306 299 4 2 0 1 0
...............................................................................................CTATCACAGCCATTTTGATGAGT........................................................ 23 1 1 258.00 258 245 3 2 4 4 0
................................................................................................TACCACAGCCATTTTGATGAGTC....................................................... 23 2 1 252.00 252 252 0 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGT........................................................ 21 0 1 243.00 243 106 1 1 1 134 0
................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................... 24 1 1 223.00 223 181 10 13 12 6 1
...................................................................................................CACAGCCATTTTGATGAGTT....................................................... 20 0 1 217.00 217 207 2 2 1 5 0
..............................................................................................TCTATCACAGCCATTTTGATGAGTT....................................................... 25 2 1 216.00 216 216 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGCTGAGTT....................................................... 23 1 1 214.00 214 5 80 59 70 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGTC....................................................... 24 2 1 209.00 209 209 0 0 0 0 0
................................................................................................TATCAGAGCCATTTTGATGAGTT....................................................... 23 1 1 186.00 186 177 3 6 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTC....................................................... 23 2 2 184.00 368 368 0 0 0 0 0
................................................................................................TATCACGGCCATTTTGATGAGTT....................................................... 23 1 1 182.00 182 138 15 17 5 6 1
................................................................................................TATCACAGCCATTTTTATGAGTT....................................................... 23 1 1 179.00 179 139 9 7 23 1 0
................................................................................................TGTTACAGCCATTTTGATGAGTT....................................................... 23 2 1 174.00 174 174 0 0 0 0 0
................................................................................................TATCACACCCATTTTGATGAGTT....................................................... 23 1 1 173.00 173 163 1 5 4 0 0
................................................................................................TATCACAGCCACTTTGATGAGTT....................................................... 23 1 1 167.00 167 131 11 10 7 8 0
................................................................................................TATCACAGCCAGCTTGATGAGCT....................................................... 23 3 3 161.00 483 381 18 15 6 1 62
................................................................................................TATCACAGCCATTTTGATAAGTT....................................................... 23 1 1 158.00 158 120 23 0 14 0 1
................................................................................................TATCATAGCCATTTTGATGAGTT....................................................... 23 1 1 147.00 147 129 7 8 2 1 0
................................................................................................TATCACAGCCATTTTGGTGAGTT....................................................... 23 1 1 139.00 139 79 37 14 8 1 0
................................................................................................TATCGCAGCCATTTTGATGAGTT....................................................... 23 1 1 139.00 139 102 17 10 9 1 0
................................................................................................TATCACAGCCATTTTGATGGGTT....................................................... 23 1 1 135.00 135 93 18 13 10 1 0
................................................................................................TATCACAGCCATTTTGATGCGTT....................................................... 23 1 1 134.00 134 4 50 27 53 0 0
.................................................................................................ATAACAGCCATTTTGATGAGTT....................................................... 22 1 1 130.00 130 130 0 0 0 0 0
............................................................................................GATCTATCACAGCCATTTTGATGAGTT....................................................... 27 3 1 127.00 127 126 0 0 1 0 0
................................................................................................TATCACAGCTATTTTGATGAGTT....................................................... 23 1 1 124.00 124 107 9 6 2 0 0
................................................................................................TATCACAGCCATTTTGATGAGAT....................................................... 23 1 1 117.00 117 104 9 3 1 0 0
................................................................................................TACTACAGCCATTTTGATGAGTT....................................................... 23 2 1 116.00 116 116 0 0 0 0 0
................................................................................................TATCACAGCCATTTTAATGAGTT....................................................... 23 1 1 112.00 112 84 9 6 11 2 0
................................................................................................TATCACAGCCATTTTGATGAGTG....................................................... 23 1 1 111.00 111 108 0 2 0 1 0
................................................................................................TATCACAACCATTTTGATGAGTT....................................................... 23 1 1 110.00 110 89 11 5 3 1 1
.................................................................................................ATCACAGCCATTTTGATGAGTC....................................................... 22 1 1 107.00 107 107 0 0 0 0 0
................................................................................................TATCACAGTCATTTTGATGAGTT....................................................... 23 1 1 104.00 104 78 9 9 8 0 0
................................................................................................TAGCACAGCCATTTTGATGAGTT....................................................... 23 1 1 103.00 103 32 19 35 17 0 0
.....................................................................................................CAGCCATTTTGATGAGTT....................................................... 18 0 1 101.00 101 96 1 1 1 2 0
.........................................................CGCTTCAAGGGGTTGTGAAATG............................................................................................... 22 1 1 100.00 100 99 0 1 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGT........................................................ 22 1 1 100.00 100 79 7 2 12 0 0
................................................................................................TTTCACAGCCATTTTGATGAGT........................................................ 22 1 1 98.00 98 96 1 0 1 0 0
................................................................................................TATTACAGCCATTTTGATGAGTTT...................................................... 24 1 1 98.00 98 98 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGCC....................................................... 23 2 1 90.00 90 89 0 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGGT....................................................... 23 1 1 85.00 85 51 25 5 4 0 0
................................................................................................TGTCACAGCCATTTTGATGAGC........................................................ 22 2 1 84.00 84 83 0 0 1 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 80.00 80 79 0 0 1 0 0
................................................................................................TATCACAGCCATTTTGAAGAGT........................................................ 22 1 3 78.33 235 37 91 37 55 4 11
................................................................................................TTTCACAGCCATTTTGATGAGTC....................................................... 23 2 1 78.00 78 78 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGA.......................................................... 20 0 1 75.00 75 30 4 10 7 24 0
.............................................................................................ATCTATCACAGCCATTTTGATGAGTT....................................................... 26 3 1 73.00 73 73 0 0 0 0 0
................................................................................................TATCACAGCCATCTTGATGAGTT....................................................... 23 1 1 73.00 73 52 8 6 5 0 2
................................................................................................TATCACAGCCCTTTTGATGAGTC....................................................... 23 2 1 73.00 73 73 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 71.00 71 68 1 1 0 0 1
................................................................................................TATCACAGCCGTTTTGATGAGTT....................................................... 23 1 1 71.00 71 44 14 10 2 1 0
................................................................................................TATCACATCCATTTTGATGAGTT....................................................... 23 1 1 70.00 70 51 9 5 3 1 1
................................................................................................TATCACAGCCATTTCGATGAGTT....................................................... 23 1 1 70.00 70 56 7 3 4 0 0
................................................................................................TATCACAGCCAGTTTGATGAGTT....................................................... 23 1 1 66.00 66 3 10 28 10 15 0
....................................................................................................ACAGCCATTTTGATGAGT........................................................ 18 0 1 65.00 65 2 20 24 17 2 0
................................................................................................TATCACAGCCATTCTGATGAGTT....................................................... 23 1 1 60.00 60 34 8 14 4 0 0
................................................................................................TAACACAGCCATTTTGATGAGTT....................................................... 23 1 1 57.00 57 47 1 7 1 1 0
................................................................................................CATCACAGCCATTTTGATGAGT........................................................ 22 1 1 57.00 57 55 0 2 0 0 0
................................................................................................TATCACAGCCATTTTGTTGAGTT....................................................... 23 1 1 57.00 57 13 18 22 4 0 0
................................................................................................TATTACAGCCATTTTGATGAGC........................................................ 22 2 1 55.00 55 55 0 0 0 0 0
.................................................................................................ATCTCAGCCATTTTGATGAGTT....................................................... 22 1 1 49.00 49 49 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................... 24 1 1 49.00 49 39 2 2 3 3 0
................................................................................................TATCACAGCCATTTTGAGGAGTT....................................................... 23 1 3 47.67 143 112 6 15 5 3 2
................................................................................................TACCACAGCCATTTTGATGAGC........................................................ 22 2 1 47.00 47 47 0 0 0 0 0
................................................................................................TATCACAGCAATTTTGATGAGTT....................................................... 23 1 1 47.00 47 22 9 12 4 0 0
................................................................................................TATCACAGCCATTTTGCTGAGT........................................................ 22 1 1 46.00 46 2 8 16 20 0 0
.................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................... 23 0 1 46.00 46 43 0 0 0 2 1
................................................................................................TATCACAGCCATTTTGATTAGT........................................................ 22 1 1 45.00 45 10 3 4 27 0 1
...............................................................................................CTATCACAGCCATTTTGATGAGTTT...................................................... 25 1 1 44.00 44 44 0 0 0 0 0
................................................................................................TATCACAGCCATTGTGATGAGTT....................................................... 23 1 1 43.00 43 35 6 1 1 0 0
................................................................................................CATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 42.00 42 42 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGATT........................................................ 22 1 1 42.00 42 28 1 5 8 0 0
................................................................................................TGTCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 41.00 41 41 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGATTT....................................................... 23 2 1 41.00 41 40 0 0 1 0 0
................................................................................................TATCACAGCCATTTTGATGAATT....................................................... 23 1 1 38.00 38 20 10 4 4 0 0
................................................................................................TATCACAGACATTTTGATGAGT........................................................ 22 1 1 38.00 38 23 9 3 2 1 0
................................................................................................TATCACAGCCATTTTGATGTGT........................................................ 22 1 1 38.00 38 23 7 6 2 0 0
................................................................................................GATCACAGCCATTTTGATGAGT........................................................ 22 1 1 38.00 38 34 1 1 2 0 0
................................................................................................TTTTACAGCCATTTTGATGAGTT....................................................... 23 2 1 38.00 38 38 0 0 0 0 0
...............................................................................................CTACCACAGCCATTTTGATGAGTT....................................................... 24 2 1 38.00 38 37 1 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTA....................................................... 23 1 1 37.00 37 28 0 3 4 2 0
...............................................................................................CTATCACAGCCATTTTGATGAGC........................................................ 23 2 1 37.00 37 37 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGAGGAGT........................................................ 22 1 3 36.67 110 50 12 30 6 8 4
................................................................................................TACCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 36.00 36 36 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGTGTT....................................................... 23 2 1 35.00 35 32 0 3 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGA........................................................ 22 1 1 35.00 35 23 1 5 1 5 0
................................................................................................TATCACAGCCATTTTGATCAGTT....................................................... 23 1 1 35.00 35 24 4 6 0 1 0
...............................................................................................CGATCACAGCCATTTTGATGAGT........................................................ 23 2 1 35.00 35 35 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGCGT........................................................ 22 1 1 34.00 34 2 5 5 22 0 0
................................................................................................TATCACAGCCATTTTGAAGAGTT....................................................... 23 1 3 33.33 100 54 20 11 12 0 3
................................................................................................TGCCACAGCCATTTTGATGAGTT....................................................... 23 2 1 33.00 33 33 0 0 0 0 0
................................................................................................AATCACAGCCATTTTGATGAGT........................................................ 22 1 1 33.00 33 30 2 1 0 0 0
...............................................................................................TTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 32.00 32 28 0 0 0 4 0
................................................................................................TATTACAGCCATTTTGATGAGCT....................................................... 23 2 1 32.00 32 32 0 0 0 0 0
...............................................................................................CGATCACAGCCATTTTGATGAGTC....................................................... 24 3 1 31.00 31 31 0 0 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 30.00 30 30 0 0 0 0 0
................................................................................................TATCACAGCCATTTTCATGAGTT....................................................... 23 1 1 30.00 30 8 4 10 8 0 0
...............................................................................................CTAGCACAGCCATTTTGATGAGTT....................................................... 24 2 1 29.00 29 29 0 0 0 0 0
................................................................................................TATCACAGCCATTTTTATGAGT........................................................ 22 1 1 28.00 28 17 3 2 5 0 1
.................................................................................................TTCACAGCCATTTTGATGAGTT....................................................... 22 1 1 28.00 28 28 0 0 0 0 0
................................................................................................TATCACAGACCTTTTGATGAGTT....................................................... 23 2 1 28.00 28 23 4 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGAC....................................................... 23 2 1 28.00 28 28 0 0 0 0 0
...............................................................................................CTAACACAGCCATTTTGATGAGTT....................................................... 24 2 1 27.00 27 27 0 0 0 0 0
................................................................................................TAGCACAGCCATTTTGATGAGT........................................................ 22 1 1 27.00 27 2 2 14 9 0 0
................................................................................................TATCTCAGCCATTTTGATGAGT........................................................ 22 1 1 27.00 27 26 0 1 0 0 0
.................................................................................................AGCACAGCCATTTTGATGAGT........................................................ 21 1 1 26.00 26 26 0 0 0 0 0
................................................................................................TATTACAGACATTTTGATGAGTT....................................................... 23 2 1 26.00 26 25 1 0 0 0 0
..............................................................................................CCTATCACAGCCATTTTGATGAGTT....................................................... 25 1 1 26.00 26 26 0 0 0 0 0
...............................................................................................ATATCACAGCCATTTTGATGAGTT....................................................... 24 0 1 26.00 26 25 0 0 0 1 0
................................................................................................TATCTCAGCCATTTTGATGAGTC....................................................... 23 2 1 26.00 26 26 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGT........................................................ 22 1 1 26.00 26 1 0 9 7 9 0
................................................................................................TATCACAGCCATATTGATGAGTT....................................................... 23 1 1 25.00 25 24 0 1 0 0 0
................................................................................................TATCACGGCCATTTTGATGAGT........................................................ 22 1 1 25.00 25 8 3 8 2 3 1
..............................................................................................TCTATCACAGCCATTTTGATGAGT........................................................ 24 2 1 24.00 24 24 0 0 0 0 0
................................................................................................TATCAAAGCCATTTTGATGAGTT....................................................... 23 1 1 24.00 24 8 12 3 1 0 0
................................................................................................TCTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 24.00 24 12 7 0 5 0 0
................................................................................................TATCACAGCCATTTTGATG........................................................... 19 0 1 24.00 24 0 0 5 5 14 0
...................................................................................................CACAGCCATTTTGATGAGTC....................................................... 20 1 1 24.00 24 24 0 0 0 0 0
................................................................................................TATCACAGGCATTTTGATGAGTT....................................................... 23 1 1 24.00 24 17 2 4 1 0 0
................................................................................................TATCACAGCCATTTTGCTGCGTT....................................................... 23 2 1 24.00 24 0 10 5 9 0 0
..................................................................................................TCACAGCCATTTTGATGAGT........................................................ 20 0 1 24.00 24 17 0 3 0 4 0
................................................................................................TATCACAGCCCTTTTGATGAGTTT...................................................... 24 1 1 23.00 23 17 0 1 5 0 0
................................................................................................TACCACAGCCATTTTGATGAGCT....................................................... 23 2 1 23.00 23 23 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGTTC...................................................... 24 2 1 22.00 22 22 0 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGC........................................................ 21 1 1 22.00 22 22 0 0 0 0 0
................................................................................................TATCCCAGCCATTTTGATGAGTT....................................................... 23 1 1 22.00 22 8 6 5 3 0 0
................................................................................................TGTCACACCCATTTTGATGAGTT....................................................... 23 2 1 22.00 22 22 0 0 0 0 0
.................................................................................................AGCTCAGCCATTTTGATGAGTT....................................................... 22 2 1 22.00 22 22 0 0 0 0 0
................................................................................................TATCACAGCCATTATGATGAGTT....................................................... 23 1 1 22.00 22 17 2 2 0 1 0
..................................................................................................TCACAGCCATTTTGATGAGTC....................................................... 21 1 1 22.00 22 22 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATTAGTC....................................................... 23 2 1 21.00 21 21 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGACTT....................................................... 23 1 1 21.00 21 15 2 2 1 1 0
.................................................................................................AGCACAGCCATTTTGATGAGTC....................................................... 22 2 1 21.00 21 21 0 0 0 0 0
................................................................................................TATCACAGCCACTTTGATGAGC........................................................ 22 2 1 20.00 20 18 0 1 0 1 0
................................................................................................TATCACAGCCATTTTGACGAGTTTC..................................................... 25 1 3 20.00 60 3 1 7 3 18 28
................................................................................................TATCACTGCCATTTTGATGAGTT....................................................... 23 1 1 20.00 20 8 4 5 3 0 0
................................................................................................TATCACCGCCATTTTGATGAGTT....................................................... 23 1 1 20.00 20 7 3 6 4 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................... 25 1 1 20.00 20 13 1 2 3 1 0
................................................................................................TATCACAGCCCTTTTGATGAGCT....................................................... 23 2 1 19.00 19 15 1 2 1 0 0
................................................................................................TATCACAGCCAATTTGATGAGTT....................................................... 23 1 1 19.00 19 10 1 0 0 8 0
................................................................................................TATTACAGCCATTTTGATTAGTT....................................................... 23 2 1 19.00 19 19 0 0 0 0 0
...................................................GAGTAACTGTTCAAGGGTT........................................................................................................ 19 3 20 18.70 374 0 0 0 2 197 175
.........................................................CTATTCAAGGGGTTGTGAAATG............................................................................................... 22 1 1 18.00 18 18 0 0 0 0 0
...................................................................................................CGCAGCCATTTTGATGAGTT....................................................... 20 1 1 18.00 18 18 0 0 0 0 0
................................................................................................TATCACAGACATTTTGTTGAGTT....................................................... 23 2 1 18.00 18 0 15 2 1 0 0
................................................................................................AATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 18.00 18 18 0 0 0 0 0
................................................................................................TATCACAGACATTTTGATGAGTC....................................................... 23 2 1 18.00 18 18 0 0 0 0 0
................................................................................................TATAACAGCCATTTTGATGAGTT....................................................... 23 1 1 18.00 18 3 1 9 4 1 0
................................................................................................TATCACAGCCATTTTGATGAGG........................................................ 22 1 1 18.00 18 8 5 3 2 0 0
................................................................................................TGTTACAGCCATTTTGATGAGT........................................................ 22 2 1 17.00 17 17 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGGTGAGGT....................................................... 23 3 1 17.00 17 0 12 3 2 0 0
...............................................................................................CTATCACCGCCATTTTGATGAGTT....................................................... 24 2 1 17.00 17 17 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGTTGAGT........................................................ 22 1 1 17.00 17 0 6 9 2 0 0
.................................................................................................ATCACAGCCATTTTGATGAG......................................................... 20 0 1 17.00 17 3 0 0 0 14 0
................................................................................................TGTCTCAGCCATTTTGATGAGTT....................................................... 23 2 1 17.00 17 17 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGTGTT....................................................... 23 2 1 16.00 16 16 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGCTT...................................................... 24 1 1 16.00 16 12 1 3 0 0 0
................................................................................................TATCACAGCCATTTAGATGAGTT....................................................... 23 1 1 16.00 16 13 1 0 1 1 0
................................................................................................TACCACAGACATTTTGATGAGTT....................................................... 23 2 1 16.00 16 16 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGATTT....................................................... 23 2 1 16.00 16 16 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGCT....................................................... 23 2 1 16.00 16 14 0 1 1 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTTC...................................................... 24 2 1 16.00 16 16 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGGT....................................................... 23 2 1 15.00 15 0 14 0 1 0 0
.........................................................CTCTTCAAGGGGTTGTGAAAT................................................................................................ 21 0 1 15.00 15 14 1 0 0 0 0
...................................................................................................CACTGCCATTTTGATGAGTT....................................................... 20 1 1 15.00 15 15 0 0 0 0 0
................................................................................................TTTCACAGCCATTTTGATGAGC........................................................ 22 2 1 15.00 15 15 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGGTGAGT........................................................ 22 1 1 15.00 15 6 4 2 2 1 0
................................................................................................TATCACAGCCATGTTGATGAGTT....................................................... 23 1 1 15.00 15 1 2 8 4 0 0
.........................................................CTCTTCAAGGGGTTGTGAAA................................................................................................. 20 0 1 15.00 15 14 0 1 0 0 0
................................................................................................TATCACAGCCATTTTGATTAGTTT...................................................... 24 1 1 14.00 14 10 0 2 2 0 0
................................................................................................TATCACACCCATTTTGATGAGT........................................................ 22 1 1 14.00 14 10 0 2 1 1 0
................................................................................................TATCACAGCCCTTTTGCTGAGTT....................................................... 23 2 1 14.00 14 0 6 3 5 0 0
................................................................................................TATCAGAGCCATTTTGATGAGT........................................................ 22 1 1 14.00 14 13 0 1 0 0 0
................................................................................................TATCACAGCCTTTTTGATGAGTT....................................................... 23 1 1 14.00 14 6 3 3 2 0 0
................................................................................................TGTCACAGCCATTTTGATGAG......................................................... 21 1 1 14.00 14 14 0 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGCT....................................................... 24 2 1 14.00 14 14 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGCGTT....................................................... 23 2 1 13.00 13 0 3 1 9 0 0
................................................................................................TATCACAGCCATTTGGATGAGTT....................................................... 23 1 1 13.00 13 6 3 3 1 0 0
................................................................................................TTTCACAGCCATTTTGATGTGTT....................................................... 23 2 1 13.00 13 12 0 0 1 0 0
................................................................................................TATTACAGCCATTTTGATGAG......................................................... 21 1 1 13.00 13 13 0 0 0 0 0
..................................................................................................TGACAGCCATTTTGATGAGTT....................................................... 21 1 1 13.00 13 13 0 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAG......................................................... 22 1 1 13.00 13 11 1 1 0 0 0
................................................................................................TATCACAGCCATTTTTATTAGTT....................................................... 23 2 1 13.00 13 0 2 0 11 0 0
................................................................................................TATCACAGCCATTTTGATGAC......................................................... 21 1 1 13.00 13 13 0 0 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAGCTT...................................................... 24 3 1 13.00 13 8 0 0 0 0 5
................................................................................................TATCACAGCCACTTTGATGAGT........................................................ 22 1 1 12.00 12 7 1 2 1 1 0
................................................................................................TATCACAGCCATTTTGATGAGCTA...................................................... 24 2 1 12.00 12 9 3 0 0 0 0
................................................................................................TATCACAGCCGTTTTGATGAGT........................................................ 22 1 1 12.00 12 2 3 3 4 0 0
...................................................................................................CACAGCCATTTTGATGAGT........................................................ 19 0 1 12.00 12 8 2 0 0 2 0
................................................................................................TACCACAGCCATTTTGATGAG......................................................... 21 1 1 11.00 11 11 0 0 0 0 0
................................................................................................TATCACAGCGATTTTGATGAGTT....................................................... 23 1 1 11.00 11 7 1 3 0 0 0
................................................................................................TATCACAGCCATTTTAATGAGT........................................................ 22 1 1 11.00 11 7 0 2 2 0 0
................................................................................................TATCACAGCCATTTTGGTGAGGT....................................................... 23 2 1 11.00 11 0 9 2 0 0 0
....................................................................................................ACAGCCATTTTGATGAGTC....................................................... 19 1 1 11.00 11 11 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGC........................................................ 22 2 1 11.00 11 10 0 1 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTG....................................................... 23 2 1 11.00 11 11 0 0 0 0 0
................................................................................................TTTCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 11.00 11 11 0 0 0 0 0
..............................................................................................TCTATCACAGCCATTTTGATGAGTC....................................................... 25 3 1 11.00 11 11 0 0 0 0 0
................................................................................................TATTACAGCCCTTTTGATGAGTT....................................................... 23 2 1 11.00 11 11 0 0 0 0 0
................................................................................................TATTACGGCCATTTTGATGAGTT....................................................... 23 2 1 11.00 11 11 0 0 0 0 0
.................................................................................................CTCACAGCCATTTTGATGAGTT....................................................... 22 1 1 11.00 11 11 0 0 0 0 0
................................................................................................TATCACAGTCATTTTGATGAGT........................................................ 22 1 1 11.00 11 4 3 2 1 0 1
................................................................................................CATCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 10.00 10 10 0 0 0 0 0
................................................................................................CATCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 10.00 10 9 0 1 0 0 0
................................................................................................TATCGCAGCCATTTTGATGAGT........................................................ 22 1 1 10.00 10 6 0 1 2 1 0
................................................................................................TATCACAGCCATTTTGATAAGT........................................................ 22 1 1 10.00 10 6 1 0 3 0 0
................................................................................................TATCACAGCCATTTTGATGTGTTT...................................................... 24 1 1 10.00 10 9 0 1 0 0 0
................................................................................................TATTACACCCATTTTGATGAGTT....................................................... 23 2 1 10.00 10 9 0 0 1 0 0
..................................................................................................TCATAGCCATTTTGATGAGTT....................................................... 21 1 1 10.00 10 10 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATTAGTT....................................................... 23 2 1 10.00 10 10 0 0 0 0 0
................................................................................................TATCACAGCCATCTTGATGAGT........................................................ 22 1 1 10.00 10 1 2 4 1 2 0
................................................................................................TATCACAGCCATTTTGAAGAGC........................................................ 22 2 3 9.33 28 11 3 10 4 0 0
................................................................................................TATCACAACCATTTTGATGAGT........................................................ 22 1 1 9.00 9 7 0 1 1 0 0
................................................................................................TATCACAGCCATTTTGATGGGTC....................................................... 23 2 1 9.00 9 9 0 0 0 0 0
................................................................................................TATCACAGCCATTTTTATGAGTC....................................................... 23 2 1 9.00 9 9 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTAA..................................................... 25 2 1 9.00 9 3 0 1 1 3 1
................................................................................................CACCACAGCCATTTTGATGAGTT....................................................... 23 2 1 9.00 9 9 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGGGT........................................................ 22 1 1 9.00 9 4 3 0 2 0 0
...................................................................................................CAAAGCCATTTTGATGAGTT....................................................... 20 1 1 9.00 9 9 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGATCT....................................................... 23 3 1 9.00 9 9 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTTC...................................................... 24 2 1 9.00 9 9 0 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGTTA...................................................... 23 1 1 9.00 9 7 0 0 0 2 0
..................................................................................................TATCAGCCATTTTGATGAGTT....................................................... 21 2 2 8.50 17 15 1 0 0 0 1
................................................................................................TATCACAGCCATTTTGATGTGTC....................................................... 23 2 2 8.50 17 16 0 1 0 0 0
................................................................................................TATCACAGCCATTTTTATGAGCT....................................................... 23 2 1 8.00 8 5 1 0 2 0 0
.................................................................................................ATCACGGCCATTTTGATGAGTT....................................................... 22 1 1 8.00 8 8 0 0 0 0 0
................................................................................................TATCACAGCCACTTTGATGAGCT....................................................... 23 2 1 8.00 8 6 0 1 0 0 1
................................................................................................TATCACACCCCTTTTGATGAGTT....................................................... 23 2 1 8.00 8 7 1 0 0 0 0
...............................................................................................CGAGCACAGCCATTTTGATGAGTT....................................................... 24 3 1 8.00 8 8 0 0 0 0 0
................................................................................................TAACACAGCCATTTTGATGAGT........................................................ 22 1 1 8.00 8 3 1 2 1 0 1
.................................................................................................ATCACAGCCATTTTGATGAGCT....................................................... 22 1 1 8.00 8 7 1 0 0 0 0
................................................................................................TATCACAGCCATTTTCATGAGT........................................................ 22 1 1 8.00 8 1 2 3 2 0 0
...............................................................................................CTATCGCAGCCATTTTGATGAGTT....................................................... 24 2 1 8.00 8 8 0 0 0 0 0
.................................................................................................ATCACAGACATTTTGATGAGTT....................................................... 22 1 1 8.00 8 8 0 0 0 0 0
................................................................................................TATCACAGCAATTTTGATGAGT........................................................ 22 1 1 8.00 8 2 3 2 1 0 0
...............................................................................................CTATCACAGCCATTTTGATTAGTT....................................................... 24 2 1 8.00 8 8 0 0 0 0 0
................................................................................................TATCACAGCTATTTTGATGAGT........................................................ 22 1 1 8.00 8 5 0 2 1 0 0
.................................................................................................ATCACAGCCATTTTGATGAGGT....................................................... 22 1 1 8.00 8 8 0 0 0 0 0
................................................................................................TATCACACCCATTTTGATGAGTC....................................................... 23 2 1 8.00 8 8 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGACGAGTTCC..................................................... 25 2 3 7.67 23 1 1 3 2 6 10
................................................................................................TATCACGGCCATTTTGATGAGTC....................................................... 23 2 2 7.50 15 15 0 0 0 0 0
................................................................................................GATCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 7.00 7 6 1 0 0 0 0
................................................................................................TATCACAGCCATTTTGCTGCGT........................................................ 22 2 1 7.00 7 0 0 2 5 0 0
................................................................................................TATCACAGCCATTTTGATCAGT........................................................ 22 1 1 7.00 7 3 1 1 2 0 0
................................................................................................TATCACAGCCATTTTGATGATTC....................................................... 23 2 2 7.00 14 14 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGATCT....................................................... 23 2 1 7.00 7 7 0 0 0 0 0
................................................................................................TATCACAGACATTTTGATGAGGT....................................................... 23 2 1 7.00 7 0 5 1 1 0 0
................................................................................................TTTTACAGCCATTTTGATGAGT........................................................ 22 2 1 7.00 7 7 0 0 0 0 0
...............................................................................................CTATTACAGCCATTTTGATGAGTT....................................................... 24 2 1 7.00 7 7 0 0 0 0 0
.........................................................CTCCTCAAGGGGTTGTGAAATG............................................................................................... 22 1 1 7.00 7 6 1 0 0 0 0
................................................................................................TATCATAGCCATTTTGATGAGT........................................................ 22 1 1 7.00 7 2 0 3 2 0 0
.................................................................................................AGAACAGCCATTTTGATGAGTT....................................................... 22 2 1 7.00 7 7 0 0 0 0 0
.................................................................................................ATCACATCCATTTTGATGAGTT....................................................... 22 1 1 7.00 7 7 0 0 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 7.00 7 7 0 0 0 0 0
.................................................................................................ATAACAGCCATTTTGATGAGTC....................................................... 22 2 1 7.00 7 7 0 0 0 0 0
...............................................................................................CGACCACAGCCATTTTGATGAGTT....................................................... 24 3 1 7.00 7 7 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTTA...................................................... 24 2 1 7.00 7 7 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGTTGAGTT....................................................... 23 2 1 7.00 7 0 6 0 1 0 0
.................................................................................................TACACAGCCATTTTGATGAGTT....................................................... 22 2 1 7.00 7 7 0 0 0 0 0
..................................................................................................TCACAGCCATTTTGATGAGTTT...................................................... 22 0 1 7.00 7 7 0 0 0 0 0
...............................................................................................CCATCACAGCCATTTTGATGAGTT....................................................... 24 2 1 7.00 7 7 0 0 0 0 0
................................................................................................TATGACAGCCATTTTGATGAGTT....................................................... 23 1 1 7.00 7 4 1 2 0 0 0
................................................................................................TATCACAGCCATTTTGATGATC........................................................ 22 2 1 7.00 7 7 0 0 0 0 0
................................................................................................TAGCACAGCCATTTTCATGAGTT....................................................... 23 2 1 7.00 7 0 0 6 1 0 0
................................................................................................CATCACAGCCATTTTGATGAGC........................................................ 22 2 1 7.00 7 7 0 0 0 0 0
.................................................................................................ATCTCAGCCATTTTGATGAGT........................................................ 21 1 1 7.00 7 7 0 0 0 0 0
..................................................................................................CCACAGCCATTTTGATGAGTT....................................................... 21 1 1 7.00 7 7 0 0 0 0 0
................................................................................................TATCACAGCCATCTTGATGAGTC....................................................... 23 2 1 7.00 7 7 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATTAGTT....................................................... 23 2 1 7.00 7 6 0 0 1 0 0
................................................................................................TATCACAGCCATTTTGCTGAG......................................................... 21 1 1 7.00 7 0 2 3 2 0 0

Anti-sense strand reads

AAACGTAGAGTAATATACCCTGTGAATTGCTAGAGGCGGGTAAGTTAAGAACGCATTGAGAAGTTCCCCAACACTTTACATCGGTAATAGTTCAGTATAGTGTCGGTAAAACTACTCAAAGCACACTTAACGAAAGTCGTAACAGGGTAGGCAAAACACAGTGACCTAATAGGT

****************************************.((((((..(((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).)))..))))))...****************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 V056

head

 M046

female body
....................................................CCATTGAGAAGTTCCCCAACACTT.................................................................................................. 24 1 1 1.00 1 1 0 0 0
....................................................TCATTGAGAAGTTCCCCAACACT................................................................................................... 23 1 1 1.00 1 0 0 1 0
...............................................................................................................................................AGGGTAGGCAAAACACAG............. 18 0 1 1.00 1 0 1 0 0
.............................................................................................AGTATAGTGTCTGTAGAA............................................................... 18 2 9 0.33 3 0 0 0 3
.................................................................................................................................................GGTGGCCAAAACACAGTAAC......... 20 3 6 0.17 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:10568304-10568477 + dmo-mir-13a Known_mirbase TTTG---CA---------------TCTCA-T---TATAT-------------------------GGGACACTTAACGATCTCCGCCCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TT--GCTTTCAGC--------ATTGTC--C-CATCCG-----TTTTGTGTCACTGG----ATTATCCA-------------------
droVir3 scaffold_13047:13335572-13335753 + dvi-mir-13a Known_mirbase TTTG---CA--TCTTATTACGGTGAT----AGATA-A-------------------CGTCGCTTC-GATACGTAAAGA--CCAACCCACTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--GCTTAA------------ATTCA--T-TGCCC-TCGTCG------GCAGAATGGGCT-----GG-------------------
droGri2 scaffold_14906:4357618-4357828 - dgr-mir-13a Known_mirbase TTTG---TA---------------TCTCA-T---TATTTTATTCTTGCATACATCT-GCA------GACTGTGAGCGAACCAAGCCCACCCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--GCTTTC-ATCACAGT--GAT-CA--TTGTCCC-TC---G------CCGGGGC----CGGTTCGTGCAGTCGCCGCCTCCTCCT
droWil2 scf2_1100000004902:2143173-2143336 - dwi-mir-13a Known_mirbase TTTTTTTGGAATCC-GTTCCGGCAA---A-A---GAT---------------------------------------GG------------AATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT--CCTGCA-ACAGTA--------T-------TCGAA-ATGGATGGTATCC--TT----AGAATA-T-------------------
dp5 2:9824890-9825058 + dps-mir-13a Known_mirbase TTCG---GC---------------TCGTA-C---TTTTT-------------------------G-GACAAAAAAAAAAAACCGTCAGCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-C---AGC--------AATCCA--T-CATCGAT-CGGG------GCAGGGC----AGGATGGA-------------------
droPer2 scaffold_0:10660037-10660203 - dpe-mir-13a Known_mirbase TTCG---GC---------------TCGTA-C---TATTT-------------------------G-GACAAAAAAAAA--ACCGTCATCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-C---AGC--------AATCCA--T-CATCGAT-CGGG------GCAGGGC----AGGATGGA-------------------
droAna3 scaffold_13340:12827582-12827743 - dan-mir-13a Known_mirbase TGCTACAAGAATCC-CCTCAA-A--------------------------------------------------AAAGG--ACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TC-GT-C---AGA--------AAACCG--T-CA--GAA-AGGGGC-GCGG--CGGC----AGGATG-T-------------------
droBip1 scf7180000396691:1710485-1710632 - TTCT---CGAAGCC-CCCCT--A-ACCCGAA---GA------------------------------------------------TCCATCCAGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--CCAAAA------------AATCGCAT-CGT------GGG------GCGCGGC----AG-----G-------------------
droKik1 scf7180000302639:1443195-1443318 + TTTG---TG---------------ATCCA-A---GAT--------------------------------------------------GTCTGATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT--TCGGCA-GCCAGAAGG--A------------------------------------------GTA-------------------
droFic1 scf7180000452523:592252-592371 - TTCG---TG---------------ATCCC-A---TAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCTGGGCAA-----------------------------------------------A-------------------
droEle1 scf7180000491080:1007113-1007231 - TTCG---TG---------------ATCCG-A---CAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCAGCA-ACTGGATA-----------------------------------------------GA-------------------
droRho1 scf7180000779250:92650-92775 + TTCG---TG---------------ATATA-T---A-T--------------------GTC----G-GAT--------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCTGGGCTA-----------------------------------------------A-------------------
droBia1 scf7180000302136:835533-835654 - TTCG---TG---------------ATCCA-A---CAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCCGGTCAAA---------------------------------------------AA-------------------
droTak1 scf7180000415769:1925965-1926082 + TTCG---TG---------------ATCCA-A---CAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCTGGGCA--------------------------------------------------------------------
droEug1 scf7180000409281:109526-109656 + TTCG---TG---------------ATCCG-A---TAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT--TCGGCA-TCTGGTCAAA--------------------------------GTT----ATTATATT-------------------
dm3 chr3R:11243240-11243361 - dme-mir-13a Known_mirbase TTTG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--GCGGCA-GCGGATCAAA---------------------------------------------AA-------------------
droSim2 3r:9985598-9985719 + dsi-mir-13a Known_mirbase TTCG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--TCGGCA-GCGGATCGAA---------------------------------------------AA-------------------
droSec2 scaffold_0:10705045-10705166 + dse-mir-13a Known_mirbase TTCG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--TGGTCA-GCGGATCGAA---------------------------------------------AA-------------------
droYak3 3R:15188569-15188692 + dya-mir-13a Known_mirbase TTCG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--TCGGCA-ACTTATT-----------T-C-------------------------------ATGTA-------------------
droEre2 scaffold_4770:10769372-10769501 - der-mir-13a Known_mirbase TTCG---TG---------------ATCCA-A---GAC----------------------------------------------------ACAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TAAAAA-GCGGGTTAAG---------------------------------AA----AACATATT-------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTTG---CA---------------TCTCA-T---TATAT-------------------------GGGACACTTAACGATCTCCGCCCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TT--GCTTTCAGC--------ATTGTC--C-CATCCG-----TTTTGTGTCACTGG----ATTATCCA-------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................231190549.0019054929361155441457518163827569
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................22117075.001707513529341070172111853145
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................2319237.0092377166192070
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................2413042.0030425982122264249025
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................2212246.00224628951319480
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................2211724.0017241421117060
........................................................................................................CTCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................221999.0099954366125373
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................211795.00795160289012038116
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................241423.004231314543816
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................211362.0036259123450
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191351.0035129247951150
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................211243.002431341111060
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................241223.0022361012131811
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................201217.0021752122070
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................231111.0011110021080
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................221107.0010700001070
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................181101.001012111960
....................................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................23190.00900001890
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................20175.0075244710300
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18165.0065220172420
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................24149.00493232390
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................23146.00462000431
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23137.00372043280
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22135.00355115230
....................................................................................................................................................TATCACAGCCATTTTGATGAGAC..................................................................................................23128.00280000280
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................24126.00261000250
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................19124.00241405500
.......................................................................................................................................................CACAGCCATTTTGATGAGTC..................................................................................................20124.00240000240
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................20124.00244003170
.....................................................................................................................................................ATCACAGCCATTTTGATGAGC...................................................................................................21122.00220000220
......................................................................................................................................................TCACAGCCATTTTGATGAGTC..................................................................................................21122.00220000220
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................25120.00201132130
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................22118.0018052380
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................20117.00171400030
........................................................................................................CTCTTCAAGG-GGTTGTGAAAT...............................................................................................................................................21115.00150100140
........................................................................................................CTCTTCAAGG-GGTTGTGAAA................................................................................................................................................20115.00150001140
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................21113.00130000130
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................19112.0012220080
........................................................................................................................................................ACAGCCATTTTGATGAGTC..................................................................................................19111.00110000110
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................2519.009301131
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTA.................................................................................................2319.009200070
......................................................................................................................................................TCACAGCCATTTTGATGAGTTT.................................................................................................2217.007000070
....................................................................................................................................................TATCACAGCCATTTTGATGATC...................................................................................................2217.007000070
droVir3
TTTG---CA--TCTTATTACGGTGAT----AGATA-A-------------------CGTCGCTTC-GATACGTAAAGA--CCAACCCACTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--GCTTAA------------ATTCA--T-TGCCC-TCGTCG------GCAGAATGGGCT-----GG-------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23130205.0030205224105143455520117283340003195610164461111108155841194012766533355737150522835311670727012612918275910106612111539294251454241758171185056443500101800310023121000
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................22119272.0019272039944814163913194181012419161040680151713636881121390155914321653539831109385121487211232316913000000011122222200211128265376012556206004260000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................2416046.00604600201362220790000000201310734121892151211928573371293235311102872200000200000022000041573300000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................2413040.00304001511692392003001025713559160142986812819482153216367994221832108161080000000011231210001161371602201100000020000
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................2111964.00196426115718160261121000113624886664388983032312171709632908002001500000000120412200139195800211200000100000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................241840.0084000110361001000015731033458109567818113258180920414745390000000000000000000412503200000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................231347.00347005243000000000001011050110010162841902000004000000000000000000039300000000000000000
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191248.00248101217100200001411255619791000381121105030001400000000000000000002275000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................251216.002160010001000003000001150234344352412375432391068000000000000000000000204110000000000000
........................................................................................................CTCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................221204.002040023405010000024053213111000003060004210000000000000100000001046200000200000004310
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................221149.001490511030000000000031210103000002103000000000000000000000000000023000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTCA................................................................................................251139.00139000033100000000000001100102322519435090100511000000000000000000000201100000000000000
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................181124.001240000101101000034377421013000007224060030030000000000000000000139000000000000000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................221115.00115008421000000000011100001300001110000000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................20196.00960427600000000005512330620000024010020000000000000000000000000111100000010000000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21196.009600787000000000011200002000000000500000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................19183.00830351510000000000321202023000000201100000000000000000000000011011000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23179.00790002000000000013014360100020141361502010012000000000000000000002000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................24175.00750010000000000025153021200000101421202001103000000000000000000008000000000000000000
........................................................................................................................................................ACAGCCATTTTGATGAGTTC.................................................................................................20173.007300101800000000000000800100009368090000316000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTCT................................................................................................25161.0061000000000000000000002000010099524000000010000000000000000000000100000000000000000
........................................................................................................................................................ACAGCCATTTTGATGAGTTT.................................................................................................20142.00420000020000000023100327100000132104000008000000000000000000002000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTAA.................................................................................................24141.004100001000000000000010000100003451011134023000000000000000000001000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................25137.00370000000000000044022204200000381500000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22134.00340070000000000022011211200000024600000000000000000000000000003000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................26225.005000000000000030000000100211512126401311310000000000000000000000000100100000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTA................................................................................................25123.00230000020000000010000010000000330301001003000000000000000000000000500000000000000
.........................................................................................................TCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................21121.00210012000000000000010101000001111100000000000000000000000000042300000000000000001
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................20118.00180032000000000101021000300000320000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................20117.001700170000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21115.00150034000000000000000001000000210100000000000000000000000000011100000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTC................................................................................................25114.00140000000000000000000040000000121300000003000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................18114.00140200000000000011111011000000200200000000000000000000000000001000000000000000000
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20111.00110016100000000000010000000000000000000000000000000000000000011000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................23110.00100003000000000000000000010000000000000000000000000000000000013002000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................22110.00100300000000000010000000000000000000000000000000000000000000006000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTCC.................................................................................................24110.00100000011000000000000010000100001101000003000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAT................................................................................................25110.00100000000000000000000000000000420301000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTCA.................................................................................................24110.00100000000000000000000000000000151201000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTCC...............................................................................................2619.0090000011000000000000000000000030002000002000000000000000000000000000000000000000
........................................................................................................................................................ACAGCCATTTTGATGAGTTA.................................................................................................2018.0080000110000000000000000000000101000000004000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................2118.0080401000000000000000000000000000000000000000000000000000000003000000000000000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2318.0080043000000000000000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................1817.0070002000000000001100000010000010100000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATC......................................................................................................1917.0070000000000000000000000000000320200000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGA........................................................................................................1736.67200000000000000000000000000000000000000000000000000200000000000009600200000000001
....................................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................2115.0050000000000000000101001000000100000000000000000000000000000001000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTTCC..............................................................................................2715.0050000000000000000000000000100010201000000000000000000000000000000000000000000000
......................................................................................................................................................TCACAGCCATTTTGATGAGTTT.................................................................................................2215.0050001000000000012000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................1915.0050030000000000000101000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................2114.0040000000000000000010000010000000000000000000000000000000000002000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTTT...............................................................................................2614.0040000000001000000000000000000102000000000000000000000000000000000000000000000000
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................2414.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATCACAGCCATTTTGATGA.....................................................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTCTC...............................................................................................2614.0040000100000000000000010000000011000000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTAA...............................................................................................2623.5070000000000000000000000000021111100000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTCAA...............................................................................................2623.5070000000000000000000000000010200201010000000000000000000000000000000000000000000
.....................................................................................CCACTCAATTCTTGCGTAA.....................................................................................................................................................................1913.0030000000000000010000000000000100000000000000000000000000000001000000000000000000
droGri2
TTTG---TA---------------TCTCA-T---TATTTTATTCTTGCATACATCT-GCA------GACTGTGAGCGAACCAAGCCCACCCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--GCTTTC-ATCACAGT--GAT-CA--TTGTCCC-TC---G------CCGGGGC----CGGTTCGTGCAGTCGCCGCCTCCTCCTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................231455.00455293162
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................221180.0018014436
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................22128.0028280
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................21121.0021201
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................24119.0019118
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21117.0017170
........................................................................................................CTCTTCAAGG-GGTTGTGAAATG..............................................................................................................................................2214.00422
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................2013.00321
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................2112.00220
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................1912.00220
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................2412.00220
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................2412.00220
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2311.00110
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................2411.00110
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................2411.00110
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................2011.00110
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................2211.00101
...................................................................................................................................................ATATCACAGCCATTTTGATGAG....................................................................................................2211.00110
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................2320.50101
....................................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................1960.17101
droWil2
TTTTTTTGGAATCC-GTTCCGGCAA---A-A---GAT---------------------------------------GG------------AATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT--CCTGCA-ACAGTA--------T-------TCGAA-ATGGATGGTATCC--TT----AGAATA-T-------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23154258.005425824712822583985612615
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................22110521.00105211793935036416258
........................................................................................................CTCTTCAAGGGGGTTGTGAAATG..............................................................................................................................................2314092.00409224153299772
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................2111119.001119234402115728
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................241289.00289010721458
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................221157.00157211102816
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................241143.0014303001067
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................191109.001095320153
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191108.0010812016629
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................251105.001050210840
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21183.008301004627
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................20163.0063860247
.........................................................................................................TCTTCAAGGGGGTTGTGAAATG..............................................................................................................................................22155.0055012439
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................23147.00470003215
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18144.00444001228
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21141.0041526037
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................22138.0038500429
...............................................................................................................................TTGCC-ATTTTATTCAACTCA.........................................................................................................................20129.0029820163
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20126.0026030716
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................22125.0025180025
........................................................................................................CTCTTCAAGGGGGTTGTGAAAT...............................................................................................................................................22121.0021000210
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23121.0021020811
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22120.0020010316
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................19120.0020010019
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................26217.0034050290
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................20116.0016000115
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................18114.001404037
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................21113.0013120001
........................................................................................................CTCTTCAAGGGGGTTGTGAAA................................................................................................................................................21112.0012000120
.........................................................................................................TCTTCAAGGGGGTTGTGAAA................................................................................................................................................20111.001102153
......................................................................................................................................................TCACAGCCATTTTGATGAGTTT.................................................................................................22110.001000082
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................24110.001013042
.........................................................................................................TCTTCAAGGGGGTTGTGA..................................................................................................................................................1819.00900045
.........................................................................................................TCTTCAAGGGGGTTGTGAAAT...............................................................................................................................................2118.00800053
...............................................................................................................................TTGCC-ATTTTATTCAACTC..........................................................................................................................1918.00860011
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................2427.5015000105
........................................................................................................CTCTTCAAGGGGGTTGTG...................................................................................................................................................1817.00710024
........................................................................................................CTCTTCAAGGGGGTTGTGAA.................................................................................................................................................2016.00600060
........................................................................................................CTCTTCAAGGGGGTTGTGA..................................................................................................................................................1916.00600042
....................................................................................................................................................TATCACAGCCATTTTGATAGT....................................................................................................2185.88470011630
........................................................................................................CTCTTCAAGGGGGTTGTGAAATT..............................................................................................................................................2315.00500050
....................................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................2015.00500005
....................................................................................................................................................TATCACAGCCATTTTGATGAGTAA.................................................................................................2415.00500050
....................................................................................................................................................TATCACAGCCATTTTGATGG.....................................................................................................2014.00440000
........................................................................................................CTCTTCAAGGGGGTTGTGAAATA..............................................................................................................................................2314.00400022
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTA.................................................................................................2313.00303000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAT................................................................................................2513.00300030
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2313.00303000
........................................................................................................CTCTTCAAGGGGGTTGTGAAATC..............................................................................................................................................2313.00300012
....................................................................................................................................................TATCACAGCCATTTTGATGTT....................................................................................................2113.00301002
......................................................................................................................................................TCACAGCCATTTTGATGAGTTA.................................................................................................2213.00300012
....................................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................2112.00200002
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................2012.00201001
........................................................................................................CTCTTCAAGGGGGTTGTGAATG...............................................................................................................................................2212.00200011
....................................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................2112.00200011
....................................................................................................................................................TATCACAGCCATTTTGATGAGTAAA................................................................................................2512.00200020
......................................................................................................................................................TCACAGCCATTTTGATGAG....................................................................................................1912.00200002
.....................................................................................................................................................ATCACAGCCATTTTGATGA.....................................................................................................1912.00202000
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................1812.00200002
........................................................................................................CTCTTCAAGGGGGTTGTGAAATGT.............................................................................................................................................2412.00200020
dp5
TTCG---GC---------------TCGTA-C---TTTTT-------------------------G-GACAAAAAAAAAAAACCGTCAGCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-C---AGC--------AATCCA--T-CATCGAT-CGGG------GCAGGGC----AGGATGGA-------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23156311.005631101841297839000899764231911075
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................22115200.001520007342925767412772500731016
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................2313063.003063022672379631000
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................2211455.00145500479966280000
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................2111058.00105809190549492715012
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................2411054.001054038408412391487002
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................221368.00368014212795220000
........................................................................................................CCCATCAAAC-GGTTGTGAAATG..............................................................................................................................................221333.00333045493217100009
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191187.00187017591830000
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................201160.001600275119180000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................211160.00160056794120000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................241133.00133017844460000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................241119.00119086328693002
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21180.00800831201720002
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................19151.0051013329240000
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18146.0046002013310000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................23140.004000286510000
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22134.003404518070000
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20134.0034021114160000
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................21125.002500718000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23124.002400106530000
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................20123.002303116110001
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................22117.001700134000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGAC..................................................................................................23116.001600142000000
........................................................................................................CCCATCAAAC-GGTTGTGAAA................................................................................................................................................20115.00150251160000
....................................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................23113.001300111010000
........................................................................................................CCCATCAAAC-GGTTGTGAAAT...............................................................................................................................................21112.00120252210000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................23110.00100307000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................24110.00100033130000
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................22110.00100002620000
.........................................................................................................CCATCAAAC-GGTTGTGAAATG..............................................................................................................................................2119.0090500400000
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................1919.0090215100000
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................1819.0090140220000
....................................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................2119.0090108000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGC...................................................................................................2117.0070007000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................2017.0070502000000
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................2417.0070151000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................2516.0060122010000
........................................................................................................CCCATCAAAC-GGTTGTGAA.................................................................................................................................................1915.0050310000001
........................................................................................................................................................ACAGCCATTTTGATGAGTTT.................................................................................................2014.0040001030000
droPer2
TTCG---GC---------------TCGTA-C---TATTT-------------------------G-GACAAAAAAAAA--ACCGTCATCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGGC-C---AGC--------AATCCA--T-CATCGAT-CGGG------GCAGGGC----AGGATGGA-------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23114724.001472417346227965765406100
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................2214959.00495953163632380186332
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................211477.0047714592571623
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................241361.003610651531898
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191147.00147001670610
........................................................................................................CCCATCAAAC-GGTTGTGAAATG..............................................................................................................................................22193.0093134488200
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18158.005800331240
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................22142.00423311340
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................24140.004001512220
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21132.00320290210
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................22121.002100011100
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................23119.00190106120
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................24117.0017002951
........................................................................................................CCCATCAAAC-GGTTGTGAAAT...............................................................................................................................................21115.00152100111
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................22112.0012022350
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22112.0012011640
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23110.0010000370
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20110.0010211510
........................................................................................................CCCATCAAAC-GGTTGTGAAA................................................................................................................................................20110.0010111430
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................2019.009012240
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................2117.007001420
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................1916.006110130
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................2516.006010140
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................1815.005011300
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................2315.005000140
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................2515.005000320
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................2014.004020200
........................................................................................................CCCATCAAAC-GGTTGTGA..................................................................................................................................................1814.004000040
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................2014.004040000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................2413.003000120
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................1813.003100020
......................................................................................................................................................TCACAGCCATTTTGATGAG....................................................................................................1913.003000210
....................................................................................................................................................TATCACAGCCATTTTGATGAGTAA.................................................................................................2412.002000110
........................................................................................................................................................ACAGCCATTTTGATGAGTTT.................................................................................................2012.002000020
........................................................................................................................................................ACAGCCATTTTGATGAGTTA.................................................................................................2012.002001010
........................................................................................................CCCATCAAAC-GGTTGTGAAATGA.............................................................................................................................................2312.002200000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2312.002010010
....................................................................................................................................................TATCACAGCCATTTTGATGATC...................................................................................................2212.002000020
...........................................................................................................................................................................TCGTGTGGA--ATGGC-C---AGC--------..................................................................1812.002000020
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................1912.002002000
droAna3
TGCTACAAGAATCC-CCTCAA-A--------------------------------------------------AAAGG--ACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TC-GT-C---AGA--------AAACCG--T-CA--GAA-AGGGGC-GCGG--CGGC----AGGATG-T-------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23122015.0022015284667547844153759788
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................2217585.0075851605589312511045419
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................211713.0071320152749593
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................241490.00490790716130195
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................231461.0046104510613
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................221134.00134011409011
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................22198.009833570017
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................24162.0062225213416
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................19157.00570824007
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................20152.005251504127
........................................................................................................CTCCTCAAAG-GGCTGTGAAATG..............................................................................................................................................22150.005081032117
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................19143.00432504032
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................24128.00280007021
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21128.00282151217
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18123.00230011516
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21121.00211070004
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20119.00190120106
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................23118.0018071307
....................................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................21117.00170000017
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23115.0015111309
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................25113.0013190003
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................24111.0011120305
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22110.0010001108
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................2019.009020007
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................2217.007000205
.........................................................................................................TCCTCAAAG-GGCTGTGAAATG..............................................................................................................................................2116.006300300
........................................................................................................CTCCTCAAAG-GGCTGTGA..................................................................................................................................................1816.006100401
........................................................................................................CTCCTCAAAG-GGCTGTGAA.................................................................................................................................................1916.006001410
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................1916.006010104
....................................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................2016.006000105
........................................................................................................CTCCTCAAAG-GGCTGTGAAAT...............................................................................................................................................2115.005131000
....................................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................2115.005100004
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................1814.004110002
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................1814.004040000
........................................................................................................CTCCTCAAAG-GGCTGTGAAA................................................................................................................................................2014.004010201
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2314.004110002
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................2514.004000211
....................................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................1943.00120000012
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................2613.003030000
....................................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................2313.003030000
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................2413.003030000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTG................................................................................................2533.009000207
....................................................................................................................................................TATCACAGCCATTTTGATGAGAC..................................................................................................2313.003030000
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................2113.003020001
....................................................................................................................................................TATCACAGCCATTTTGATGAGCA..................................................................................................2313.003010002
....................................................................................................................................................TATCACAGCCATTTTGATGATC...................................................................................................2212.002000200
......................................................................................................................................................TCACAGCCATTTTGATGAGTC..................................................................................................2112.002020000
droBip1
TTCT---CGAAGCC-CCCCT--A-ACCCGAA---GA------------------------------------------------TCCATCCAGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--CCAAAA------------AATCGCAT-CGT------GGG------GCGCGGC----AG-----G-------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTTG---TG---------------ATCCA-A---GAT--------------------------------------------------GTCTGATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT--TCGGCA-GCCAGAAGG--A------------------------------------------GTA-------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTCG---TG---------------ATCCC-A---TAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCTGGGCAA-----------------------------------------------A-------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTCG---TG---------------ATCCG-A---CAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCAGCA-ACTGGATA-----------------------------------------------GA-------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTCG---TG---------------ATATA-T---A-T--------------------GTC----G-GAT--------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCTGGGCTA-----------------------------------------------A-------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTCG---TG---------------ATCCA-A---CAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCCGGTCAAA---------------------------------------------AA-------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTCG---TG---------------ATCCA-A---CAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TCGGCA-GCTGGGCA--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTCG---TG---------------ATCCG-A---TAT----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT--TCGGCA-TCTGGTCAAA--------------------------------GTT----ATTATATT-------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTTG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--GCGGCA-GCGGATCAAA---------------------------------------------AA-------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................231165783.0016578300009944201181091664182401010603611605451917619748245746586311255633819740106192233306299727042181904227600000000000000000566728392216971422587164946183235822274463439755126159146205542879371792267136290424484076114561020767771101910881474048225943814701652392123400001000207332938646478823444743326123282716000005031221715493945439603303492116876362211509418925137735014260824210483919351634000164193600000462400000270402138478691679371461577639292287400970000308937882354167299532349272329803850466832023252440100264587409060473985712313960432391311053946608148821441791103391329712848396867632585305395138851089541105673243661171317191108277191428796147169253542177741607631344543652803132852271016516757514304837
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................22149902.0049902000089301122131350109301350137130334545501920193817111420812773252256662331272016503801597000000000000000002216151635532613015367201214474318815072717948621522354431167145310923291774568715712217303241742931245908354206523020002100020241932201211312106189106800000239225124932105608591385682332542144499651412226711033701907811660007110120000014130011042714962282581112212518103511400131100177237020311115616131914472974164312948151616706208192572715209013385419158260300105157215278310180432522114411871272159821119135715066133079872532234232271901214912227482613210744524351992055231165468416641384689226268850
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................2117096.007096000038200010100150021000090000212289299105400101001001002212105059400000000000000000274211840021012136717201224351727106820091843123301073890188036197923868444000000000020200000000000000000000060127165066207834912314214011621206110256101000000030000000000000000500021340309100000007801263713011377334925400113010112004023310862991181101422100100205391360103220114116728210711100140106251421737411740
........................................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................2214149.004149000000144200000000000000000366710516223050000000000200100000000000000000000000000001001761867501502207203400203141300001720417720013703034915211400000000005113878200000001000000000000076180305642828113177261192421340000019000200000000000000000000000140000000000100000000144122033100031304120008002012002000100010000000005270102949210974241285200001321021000202300120110004106226151106300
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................2412296.00229600002100100100000010100000403000000011000120100021100000118100000000000000000201446319180010015056040110014100343202331001220404290251473800000000001041810021150102000000210900617205200341465112378096300870971013000306100000200000001322732101320203200110003746128210013180425111511130121130132012229142315221818224110625975763514620135035241591590144556411232817501452122006191320
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................2012048.00204800000000000000100400000100021110788643280000000000000000000004110000000000000000001006000000000114007006720640000000010001337650460181633738217839001400000100000000000000000000000000114162066223297109112168116029000101180000000000000000000000000000000001000022000000000003001004202000001100000000000000035000813000009974701000000201000000004000000000006600000011000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................2411450.001450000000000000000000000420002000000000111110300526533410000000000000000000000000014310610000071250101054112111000130116402022911742114000000000021071123620001500000000111170640440017431480360693000003916180001048000009500000021161202123210190000320035014000055000401140010010110020025670305750716739411211112151810174202152210100241029914010100030000510131000400
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................1911363.00136300000000000000100000000000200242411102220001000004230100000000000000000000000010030000000000000001121000000000000000005506043291200100000000001116391520332320101000002061003848022004542460901100000016230100000000000000000000010721130321104000000005998031700011616051200030020210316001010363034124910361470006324541561573111021510013030101011000000001410100101000
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................221656.006560000401232000000000000000000000000000000002010001100000000000000000000000000000032000000020015001010000100010020100001860403618031960000000000000000000000000000000110001221010004292191310312000003100000000000000000000000000000000000000000000000000031000324100000011000000000120101937114306218560000135940100027330011100000000000000000500000001100
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................181535.0053500000000000000000000010000002212425300000000000000000000000000000000000000000011000000000000000010001004000000000100500210000002302100210000000000000000000000000000000006046052124247943120000022000000000000000000000000000000000000000000000001000100000000000000000000001000000000000110000025010000000000000000000000000000000000000000001
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................191479.004790000000000000020060000000001971317021000000000000000000000110000000000000000000000000900000024009010102800000000001000110100020612200320000000000000000000000000000000082002111187151041721010006000000000000000000000000000000000000000000000000101500003801110000900000000000000001000000000007573100100200000000000000000000000008110000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................251450.004500000000000000000000000000000000000221100030300023001000000000000000000000000000009000400000100400000012000100002100202000000001022000000000001512033130100000000000000111206002407160700000031300000000100000190000000000000310032013000100000100000001100000101000000000000000263810272826258101000225112200456440100005215100000000000004110000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................231431.00431000000000420001000000000000000000000000000000000000000000000000000000000000000001102500030000010000111800000000100010200202140202000000000000001000010000100000000000017707007717060132000002800000000000000000000000000000000000000000010000340230000250200000200010000001000032201032141801201915143565911005111001101000010000000000110010101100
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................221345.0034500000000000000200000001000100000000000000110000010010000000000000000000000000000200300000004002000000130000000000000024010217030200000000000000000110000000000000000001112010003803060300000030000000010000000000000000200000010001100000000001101840013801110012110010102054100511110376821309101013130310023430411101100101000000000100100201400
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................231337.0033700002000111020000000000000000000000000100000000020000000000000000000000000000110000000001000000001000200100000101010010000100202100000000000000000000000200000010000036050001304045045400000101000000000000000000000000001000000000000000000002000000013000000000001000000000101368316141452021413181931100022320130300000000000000000100000002000
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................221302.003020000100000010000000000000000000000000000000000003010000000000000000000000000000000001000000101001000150102000000000000000001000210000000000000000120100000000000010004504000903035133100000160000000000000000000000000000000000000000000000000011000046040110110011010000010001044327592010118172641100020102113300000000000000000000000001100
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................181301.0030100000000000000000000000000100000000020000000011100010000000000000000000000000000000000000000000000000000000000000000210300280102000000000001220000000000000000000011091309000200130003000000411000000000000000000000020010000001000000000000030115100115283510010800010100513201062921009231000895190400000010000100000100000000000200000000001
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................231231.002310000400243030000000000100000000000000000000000000010000000000000000000000000000000000000410000000000030000000010000031030323010410000000000000100000000000000000000001016030071117190130000001700000000010000000000000000000000000000010001000100010000480101000000000000000000003000242001007101051001013000200000312100100000000500000003000
.........................................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................211217.0021700001000000000000000000000030140030000000000000000000000000000000000000000000000200020000002022010001200000000001001010101120000000000000000120000000000000000000000007043310140578150000070000000000000000000000000000000000000000000000023001000030000000040000010000000000000000001000813718133030000003038000001000000000011700200000000
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................211192.00192000000000000000000000000000010000000000000000000000000000000000000000000000000001202112100001102200222745000020004350100002010613013000000000000000000000000000000000010220200230410000000004000000000000000000000000000000000000000000000003600100001400000000000000000000000331000000000011150500000000000000000000100000000100000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................261192.0019200000000000000000000010000000000000103000000010010000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000150000201000200000000000001000001000000000000001010000003000001400000000000001020010700000000000000000000000000000000000000000018239152228910000000012000014201000000218000000000000000010000000
........................................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................211163.0016300000000020000000000000000000134001000000000000000000000100000000000000000001120155532000001017000022500000000131000000000000011000000000000040000000000000000000000061602204413072650000020000000000000000000000000000000000000000000000012000000000000000000000100000000000000000000000121317510000000000000000000000000010100100000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................221142.001420000100000010000010000000000000000000000000000000000100001000000000000000000012010036000000000100100080000000012000000000000000000000000000000000000000000000000000006100100504000200000010010000000000000000000000000000000000000000000022001000020000100000000000000001001272907190000012232300002101111002000000000000000000000003000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................241138.001380000000000010000000000000010000000000000001000000000000000000000000000000000000001010000000000100000050001000000100000010005010430000000000101000000000000000000000001301001603020200001040000000000000000000000000003000000001000000420013001000037100000040000002010000100203010100100343155110000000011100001200000000000500000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTATC...............................................................................................26198.009800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGA........................................................................................................17493.7537500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050300000000000000010000000000000000000000000000010000000000000000000000000000000000000000000010110274004538000071161715300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................21179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000010000000000000001000000001005000000000000000000000000000000000000770400280105050000005000000000000000000000000000000000000000000000000000000001301000000000000000000000020000000000020310000020000000000000000000000000100000000000
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20177.0077000000000000000000000000000000470100000010000000000000000000000000000000000000000000000000000000026200000000000110000000000000021000000000000000000000000000000000000240100090401000000001000000000000000000000000000000000000000000000002100000000000000001000000000000000230202010100003061110000000000000000000000000000000000000000
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................18175.0075000000000000000000000000000010420000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000200000000000001000000100000000000000000350400120410020000000000000000000000000000000000000000000000000000003300000000000000000000000000000000451202010010010144700000000000100000000000000000000000000000
droSim2
TTCG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--TCGGCA-GCGGATCGAA---------------------------------------------AA-------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................2316948.006948160210460112832914118621119338485400001
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................2211889.00188919962514339734131314131767300000
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................2111309.001309291492162872000164300000
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................181646.0064610006957500000000001
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................191288.002881073001316400000100000
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................201240.00240260032818000111000000
........................................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................221169.00169100156238000109700000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................24176.007600010061029224400000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................25158.00580011000729162200000
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................19147.0047602011000043300000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................26140.0040000000422292100000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................22137.0037200281200020200000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................24126.00260001100000201300000
....................................................................................................................................................TATCACAGCCATTTTGA........................................................................................................17426.0010400000012165962000000
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18124.0024700002000141000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21121.0021200140400000100000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTCG...............................................................................................26119.0019000001900000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................22118.0018130000000000500000
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................22118.0018100200000006000000
........................................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................21116.001641110700020000000
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................21114.0014140000000000000000
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21111.001100020001100700000
....................................................................................................................................................TATCACAGCCATTTTG.........................................................................................................1649.2537000000100036000000
.........................................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................2118.00800020300000300000
........................................................................................................CTCCTCAAAG-GGTTGTGAA.................................................................................................................................................1918.00800000800000000000
...........................................................................................................................................................GCCATTTTGATGAGTT..................................................................................................1618.00800000000017000000
........................................................................................................CTCCTCAAAG-GGTTGTGA..................................................................................................................................................1817.00700000700000000000
...............................................................................................................................TCGACTATT--A-TCTACTCA.........................................................................................................................1817.00700500200000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................2315.00510000000000400000
........................................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................2015.00500000500000000000
....................................................................................................................................................TATCACAGCCATTTT..........................................................................................................1554.2021000000001119000000
.....................................................................................................................................................ATCACAGCCATTTTGATG......................................................................................................1814.00400000400000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGCAA.................................................................................................2414.00400000000004000000
....................................................................................................................................................TATCACAGCCATTTTGATGG.....................................................................................................2014.00440000000000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................2414.00400020000010100000
........................................................................................................CTCCTCAAAG-GGTTGTGAAATGT.............................................................................................................................................2313.00300001000010100000
.........................................................................................................TCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................2013.00310000100010000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................2213.00320000000100000000
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................1813.00300000000100200000
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................2013.00300000300000000000
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................1913.00310001000000100000
.........................................................................................................TCCTCAAAG-GGTTGTGAA.................................................................................................................................................1813.00300000300000000000
...........................................................................................................................................................................TCGTGCGAA--TC--TCGGCA-G...........................................................................1813.00300300000000000000
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................2412.00200000100000100000
........................................................................................................................................................ACAGCCATTTTGATGAGTTA.................................................................................................2012.00200000000101000000
...................................................................................................................................................ATATCACAGCCATTTTGA........................................................................................................1832.00600000600000000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTTCG...............................................................................................2512.00200000200000000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGCA..................................................................................................2312.00200000000002000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2312.00200020000000000000
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................2012.00200000000000200000
........................................................................................................................................................ACAGCCATTTTGATGAGTTAA................................................................................................2112.00200000000002000000
........................................................................................................CTCCTCAAAG-GGTTGTGAAATGTCG...........................................................................................................................................2512.00200001100000000000
...........................................................................................................................................................................TCGTGCGAA--TC--TCGGCA-GCG.........................................................................2012.00220000000000000000
...........................CA-A---GCC----------------------------------------------------ATAGTTCTTACGTAA.....................................................................................................................................................................2111.00100000000000100000
....................................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................2011.00100000000001000000
droSec2
TTCG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--TGGTCA-GCGGATCGAA---------------------------------------------AA-------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23146028.00460286065463350711369
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................2216525.00652543510414434543
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................211597.00597571448478
........................................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................221491.0049117637791
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191290.002900022367
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................241165.00165488172
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................22168.006858082
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21158.005830523
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................24152.0052313612
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................19152.005270045
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18151.005100942
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................23137.003711278
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23135.0035101123
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................24132.0032011813
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................20131.003140027
.........................................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................21127.002710818
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21127.002726001
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................22113.00130058
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22112.001210110
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................25111.00112153
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................18110.001000100
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................2016.0066000
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................2015.0050050
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................2214.0040022
........................................................................................................CTCCTCAAAG-GGTTGTGTT.................................................................................................................................................1914.0042002
........................................................................................................CTCCTCAAAG-GGTTGTGAA.................................................................................................................................................1914.0040040
............................................................................................................TCAAAG-GGTTGTGAAATG..............................................................................................................................................1814.0041003
........................................................................................................CTCCTCAAAG-GGTTGTGA..................................................................................................................................................1814.0040013
........................................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................2013.0031011
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................2013.0030012
........................................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................2113.0030030
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................1813.0030012
....................................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................1952.20111046
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................2412.0020020
....................................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................2112.0021001
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA...............................................................................................2612.0020020
....................................................................................................................................................TATCACAGCCATTTTGATGT.....................................................................................................2012.0020002
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................2412.0020011
.........................................................................................................TCCTCAAAG-GGTTGTGAAA................................................................................................................................................1912.0021001
........................................................................................................CTCCTCAAAG-GGTTGTGAAATA..............................................................................................................................................2211.0010010
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................2111.0011000
........................................................................................................................................................ACAGCCATTTTGATGAGC...................................................................................................1811.0010001
....................................................................................................................................................TATCACAGCCATTTTGATA......................................................................................................1921.0020002
.........................................................................................................TCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................2011.0010001
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................2211.0010001
.....................................................................................................................................................ATCACAGCCATTTTGATGAGG...................................................................................................2111.0011000
....................................................................................................................................................TATCACAGCCATTTTGATGAAA...................................................................................................2211.0011000
....................................................................................................................................................TATCACAGCCATTTTGATT......................................................................................................1911.0011000
droYak3
TTCG---TG---------------ATCCA-A---GCC----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC--TCGGCA-ACTTATT-----------T-C-------------------------------ATGTA-------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23135057.0035057441354185946623219959093340000
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................2214356.0043563943711765416081477771000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................2311380.001380011361351000000
........................................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................2211187.001187069602114420000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................241331.003310151303537104100000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................221274.00274011915311000000
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................211256.0025670343018307040000
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................221215.002152020331600000
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191157.0015720358325930000
........................................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................21141.0041203621000000
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18141.004110011101900000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................21137.0037032500000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................24135.00350015631010000
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20132.0032012820100000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................24131.0031001651810000
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21130.0030041461500000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................23127.0027002212200000
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................19126.0026146301200000
........................................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................20116.0016011100400000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................23113.0013001010200000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................22113.0013001300000000
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................20110.001044101000000
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................1819.00900620100000
....................................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................2318.00800800000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................2418.00801302200000
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................2218.00830011300000
.........................................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................2117.00702220100000
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................2017.00702203000000
........................................................................................................CTCCTCAAAG-GGTTGTGAAATGT.............................................................................................................................................2316.00600600000000
....................................................................................................................................................TATCACAGCCATTTTGATGAC....................................................................................................2116.00640200000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................2214.00400110200000
.......................................................................................................................................................CACAGCCATTTTGATGAGTC..................................................................................................2014.00400400000000
....................................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................2114.00420001100000
...............................................................................................................................TCGCCTATT--A-TCTACTCA.........................................................................................................................1813.00310200000000
...........................................................................................................................................................................TCGTGCGAA--TC--TCGGCA-ACT.........................................................................2013.00330000000000
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2313.00302100000000
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT................................................................................................2513.00301100100000
........................................................................................................CTCCTCAAAG-GGTTGTGAA.................................................................................................................................................1912.00200100100000
........................................................................................................CTCCTCAAAG-GGTTGTGAAATGA.............................................................................................................................................2312.00200200000000
droEre2
TTCG---TG---------------ATCCA-A---GAC----------------------------------------------------ACAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT--TAAAAA-GCGGGTTAAG---------------------------------AA----AACATATT-------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................................................................TATCACAGCCATTTTGATGAGTT..................................................................................................23143373.0043373224714749423340366811738839
....................................................................................................................................................TATCACAGCCATTTTGATGAGT...................................................................................................22114339.001433913171875135055514290991
....................................................................................................................................................TATCACAGCCATTTTGATGAG....................................................................................................2111143.00114312846721988700
....................................................................................................................................................TATCACAGCCATTTTGATGAGTC..................................................................................................231778.0077855728201910
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTT.................................................................................................241394.0039426177479131220
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTT..................................................................................................221273.0027316492410120
....................................................................................................................................................TATCACAGCCATTTTGATGAGC...................................................................................................221235.002350210600190
........................................................................................................CTCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................221189.0018915976912770
....................................................................................................................................................TATCACAGCCATTTTGATGAGTA..................................................................................................231164.00164012011600
........................................................................................................................................................ACAGCCATTTTGATGAGTT..................................................................................................191148.001481247443510
.....................................................................................................................................................ATCACAGCCATTTTGATGAGT...................................................................................................211101.00101861200030
....................................................................................................................................................TATCACAGCCATTTTGATGAGTG..................................................................................................23195.0095213020780
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTC.................................................................................................24193.0093541652340
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTA.................................................................................................24185.008514231305300
....................................................................................................................................................TATCACAGCCATTTTGATG......................................................................................................19154.005465000421
....................................................................................................................................................TATCACAGCCATTTTGATGA.....................................................................................................20152.0052153500290
........................................................................................................................................................ACAGCCATTTTGATGAGT...................................................................................................18149.0049101070310
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTG.................................................................................................24146.004671400340
......................................................................................................................................................TCACAGCCATTTTGATGAGTT..................................................................................................21145.0045517230180
....................................................................................................................................................TATCACAGCCATTTTGATGAGA...................................................................................................22129.002931301210
.......................................................................................................................................................CACAGCCATTTTGATGAGTT..................................................................................................20126.002619210130
.......................................................................................................................................................CACAGCCATTTTGATGAGT...................................................................................................19112.001210010100
....................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA................................................................................................25111.00110040070
.....................................................................................................................................................ATCACAGCCATTTTGATGAG....................................................................................................20111.001110010000
....................................................................................................................................................TATCACAGCCATTTTGAT.......................................................................................................18110.00100001090
.........................................................................................................................................................CAGCCATTTTGATGAGTT..................................................................................................18110.00100013060
......................................................................................................................................................TCACAGCCATTTTGATGAGT...................................................................................................2018.0081100060
........................................................................................................CTCCTCAAAG-GGTTGTGAAATT..............................................................................................................................................2216.0060004020
....................................................................................................................................................TATCACAGCCATTTTGATGAGCC..................................................................................................2315.0050400010
........................................................................................................CTCCTCAAAG-GGTTGTGAAA................................................................................................................................................2015.0050010040
....................................................................................................................................................TATCACAGCCATTTTGATGAGG...................................................................................................2215.0050011120
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTTT.................................................................................................2314.0041100020
.........................................................................................................TCCTCAAAG-GGTTGTGAAATG..............................................................................................................................................2114.0041001020
.....................................................................................................................................................ATCACAGCCATTTTGATGAGTC..................................................................................................2214.0040400000
.......................................................................................................................................................CACAGCCATTTTGATGAG....................................................................................................1814.0040000040
....................................................................................................................................................TATCACAGCCATTTTGATGAA....................................................................................................2113.0030100020
...................................................................................................................................................ATATCACAGCCATTTTGATGAGTT..................................................................................................2413.0031101000
....................................................................................................................................................TATCACAGCCATTTTGATGAT....................................................................................................2113.0030001020
........................................................................................................CTCCTCAAAG-GGTTGTGAAAT...............................................................................................................................................2113.0030011010
....................................................................................................................................................TATCACAGCCATTTTGAGT......................................................................................................1972.001410002110

Generated: 10/20/2015 at 07:00 PM