dmo-mir-133

AATTCTAAAAACATGAAATAAATTGTGTTGTGTACTCAAACAAACATCCACAACGCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGTTTTTCGAGAATTTGGTCCCCTTCAACCAGCTGTAGCAGTGGTTGATGACAACAAGTTGAGATGAATATATAATGAACCGTAAAAATAAAGATGGGA **********************************************(((((((((((...(((((((((((....(((((((((((........)).)))))).)))..)))))))))))..))))).)))).)).**********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head	M046 female body	M060 embryo	V110 male body	V041 embryo
.....................................................................................................TTGGTCCCCTTCAACCAGCTGT...............................................................	22	0	1	135967.00	135967	53267	44606	18377	9038	9951	728
.....................................................................................................TTGGTCCCCTTCAACCAGCTG................................................................	21	0	1	11059.00	11059	1355	1119	8109	334	133	9
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTT..............................................................	23	1	1	4298.00	4298	1972	1616	465	90	148	7
.....................................................................................................TTGGTCCCCTTCAACCAGCT.................................................................	20	0	1	3409.00	3409	1169	980	1117	5	138	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGC...............................................................	22	1	1	2980.00	2980	281	136	11	2539	9	4
.....................................................................................................TTGGTCCCCTTCAACCCGCTGT...............................................................	22	1	1	2148.00	2148	178	1961	0	0	2	7
.....................................................................................................TGGGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	1758.00	1758	235	133	2	1387	0	1
......................................................................................................TGGTCCCCTTCAACCAGCTGT...............................................................	21	0	1	1538.00	1538	39	30	1449	16	2	2
.....................................................................................................TTGGTCCCCTTCCACCAGCTGT...............................................................	22	1	1	801.00	801	74	703	0	15	0	9
......................................................................................................TGGTCCCCTTCAACCAGCTG................................................................	20	0	1	646.00	646	1	0	645	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.............................................................	24	2	1	468.00	468	218	187	53	1	7	2
.....................................................................................................TTGGTCCCCTTCAACCAG...................................................................	18	0	1	467.00	467	213	178	5	0	70	1
.....................................................................................................TTGGGCCCCTTCAACCAGCTGT...............................................................	22	1	1	459.00	459	262	174	6	12	2	3
.....................................................................................................TTGGTCCCCTTCACCCAGCTGT...............................................................	22	1	1	416.00	416	131	282	0	0	0	3
.....................................................................................................TGGGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	400.00	400	12	3	0	385	0	0
.....................................................................................................TTGGACCCCTTCAACCAGCTGT...............................................................	22	1	1	383.00	383	277	81	5	13	6	1
.....................................................................................................TTGGCCCCCTTCAACCAGCTGT...............................................................	22	1	1	311.00	311	183	85	18	13	12	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTA..............................................................	23	0	1	268.00	268	100	94	56	7	8	3
.....................................................................................................TTCGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	252.00	252	16	16	3	214	3	0
...............................................................AGTTGGTTGACATCGGGTCAGAT....................................................................................................	23	0	1	222.00	222	69	47	13	59	17	17
.....................................................................................................TTGGTCCCCTTCCACCCGCTGT...............................................................	22	2	1	210.00	210	5	204	0	0	0	1
.....................................................................................................TTAGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	202.00	202	45	135	4	10	5	3
.....................................................................................................TTGGTCCCCTTCTACCAGCTGT...............................................................	22	1	1	197.00	197	63	132	1	0	0	1
....................................................................................................CTTGGTCCCCTTCAACCAGCTGT...............................................................	23	1	1	191.00	191	52	38	53	46	1	1
.....................................................................................................TTGGTCACCTTCAACCAGCTGT...............................................................	22	1	1	190.00	190	110	67	1	0	9	3
.....................................................................................................TTGGTCCCCCTCAACCAGCTGT...............................................................	22	1	1	189.00	189	84	86	4	5	9	1
.....................................................................................................TTGGTCCCCTTCAACCATCTGT...............................................................	22	1	1	188.00	188	60	104	8	5	11	0
.....................................................................................................TTGGTCCCCTTCAACAAGCTGT...............................................................	22	1	1	181.00	181	116	52	4	2	6	1
.....................................................................................................TTGGTCCCCTTCAACCAGCTGA...............................................................	22	1	1	181.00	181	80	70	10	14	7	0
.....................................................................................................CTGGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	180.00	180	88	62	2	23	5	0
.....................................................................................................TTGGTCCACTTCAACCAGCTGT...............................................................	22	1	1	180.00	180	91	40	1	33	13	2
.....................................................................................................TTGGTCCCCTTCAACCAGCCGT...............................................................	22	1	1	173.00	173	78	81	3	5	6	0
.....................................................................................................TTGGTCCCCTTCGACCAGCTGT...............................................................	22	1	1	164.00	164	88	70	3	0	2	1
.....................................................................................................TTGCTCCCCTTCAACCAGCTGT...............................................................	22	1	1	163.00	163	56	98	3	5	1	0
.....................................................................................................TTGGTCCCCTTCAGCCAGCTGT...............................................................	22	1	1	156.00	156	79	57	8	6	4	2
.....................................................................................................TTGGTCCCATTCAACCAGCTGT...............................................................	22	1	1	155.00	155	79	41	3	17	12	3
.....................................................................................................TTGGTCCCCTTCAACCAGCTTT...............................................................	22	1	1	153.00	153	28	108	6	8	3	0
.....................................................................................................TTGTTCCCCTTCAACCAGCTGT...............................................................	22	1	1	153.00	153	13	12	10	102	16	0
.....................................................................................................TTGGTCCCCTTCAACCGGCTGT...............................................................	22	1	1	149.00	149	75	44	13	10	6	1
.....................................................................................................TTGGTCCCCTTCACCCCGCTGT...............................................................	22	2	1	147.00	147	22	125	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGC..................................................................	19	0	1	144.00	144	3	11	100	30	0	0
.....................................................................................................TTGGTCCCCGTCAACCAGCTGT...............................................................	22	1	1	137.00	137	78	57	0	1	1	0
.....................................................................................................TTGGTCCCCTCCAACCAGCTGT...............................................................	22	1	1	128.00	128	65	52	6	2	2	1
.....................................................................................................TTGGTCCCTTTCAACCAGCTGT...............................................................	22	1	1	123.00	123	57	48	3	9	5	1
.....................................................................................................TTGGTCCCCTTCAACCAGCTGG...............................................................	22	1	1	123.00	123	45	60	11	5	1	1
.....................................................................................................TTGGTCCCCTTGAACCAGCTGT...............................................................	22	1	1	120.00	120	10	4	102	3	1	0
.....................................................................................................TCGGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	119.00	119	65	37	4	7	2	4
.....................................................................................................TTGGTCCCCTTCAAACAGCTGT...............................................................	22	1	1	118.00	118	30	51	2	34	0	1
.....................................................................................................TTGGTCTCCTTCAACCAGCTGT...............................................................	22	1	1	115.00	115	56	47	2	6	3	1
.....................................................................................................TTGGTCCTCTTCAACCAGCTGT...............................................................	22	1	1	114.00	114	52	47	2	5	4	4
.....................................................................................................TTGGTACCCTTCAACCAGCTGT...............................................................	22	1	1	112.00	112	55	47	1	0	8	1
.......................................................................................................GGTCCCCTTCAACCAGCTGT...............................................................	20	0	1	110.00	110	22	23	60	1	4	0
.....................................................................................................TTGGTCCCCTTAAACCAGCTGT...............................................................	22	1	1	109.00	109	17	28	46	14	3	1
.....................................................................................................TTGGTCCCCTTCAACTAGCTGT...............................................................	22	1	1	107.00	107	40	40	1	21	4	1
.....................................................................................................TTGGTCCCCTTCAACCAGCTAT...............................................................	22	1	1	101.00	101	31	56	5	2	6	1
.....................................................................................................TTGGTCCCCTGCAACCAGCTGT...............................................................	22	1	1	99.00	99	56	39	4	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTCT...............................................................	22	1	1	98.00	98	53	39	0	3	2	1
.....................................................................................................TTGATCCCCTTCAACCAGCTGT...............................................................	22	1	1	97.00	97	36	52	2	2	3	2
.....................................................................................................TTTGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	94.00	94	32	41	7	6	8	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTT................................................................	21	1	1	89.00	89	29	24	24	9	3	0
.....................................................................................................TTGGTCCCCTTCAACCAGATGT...............................................................	22	1	1	88.00	88	44	39	0	0	4	1
.....................................................................................................TTGGTCCCCTTCAACCCGCTGTT..............................................................	23	2	1	82.00	82	12	70	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCACCTGT...............................................................	22	1	1	81.00	81	50	24	0	4	3	0
.....................................................................................................ATGGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	81.00	81	31	25	6	17	2	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTC..............................................................	23	1	1	77.00	77	26	28	3	14	6	0
.....................................................................................................GTGGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	77.00	77	24	19	4	26	3	1
......................................................................................................TGGTCCCCTTCAACCAGCT.................................................................	19	0	1	77.00	77	1	1	75	0	0	0
.....................................................................................................TTGGTCCCCTTCAATCAGCTGT...............................................................	22	1	1	74.00	74	38	32	1	1	2	0
...............................................................AGTTGGTTGACATCGGGTCAGA.....................................................................................................	22	0	1	72.00	72	18	9	1	17	5	22
.....................................................................................................TTGGTCCCCTTCAACCTGCTGT...............................................................	22	1	1	69.00	69	38	28	0	3	0	0
.....................................................................................................TTGGTCCCCTTCAACCAACTGT...............................................................	22	1	1	64.00	64	14	41	2	3	3	1
.....................................................................................................TGGGTCCCCTTCAACCAGCTG................................................................	21	1	1	64.00	64	6	4	0	54	0	0
.....................................................................................................TTGGTCCCCTTTAACCAGCTGT...............................................................	22	1	1	63.00	63	19	21	15	3	5	0
.....................................................................................................TTGGTTCCCTTCAACCAGCTGT...............................................................	22	1	1	59.00	59	19	23	3	7	7	0
.....................................................................................................TTGGTCCCCTTCAACCCGCTG................................................................	21	1	1	59.00	59	7	51	1	0	0	0
.....................................................................................................TTGGTGCCCTTCAACCAGCTGT...............................................................	22	1	1	58.00	58	18	11	0	26	2	1
......................................................................................................TTGTCCCCTTCAACCAGCTGT...............................................................	21	1	1	58.00	58	10	8	5	26	9	0
.....................................................................................................TGGGACCCCTTCAACCAGCTGT...............................................................	22	2	1	56.00	56	48	5	0	3	0	0
.....................................................................................................TTCGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	56.00	56	0	0	0	56	0	0
.....................................................................................................TGGGTCCCCTTCTACCAGCTGT...............................................................	22	2	1	53.00	53	17	36	0	0	0	0
.....................................................................................................TTGGTCCGCTTCAACCAGCTGT...............................................................	22	1	1	52.00	52	33	16	1	1	1	0
.....................................................................................................TGGTTCCCCTTCAACCAGCTGT...............................................................	22	2	1	52.00	52	0	0	0	52	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGTTGT...............................................................	22	1	1	50.00	50	23	16	3	5	2	1
.....................................................................................................TTGGTCCCCTTGAACCAGCTG................................................................	21	1	1	50.00	50	0	0	50	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCCGCT.................................................................	20	1	1	50.00	50	3	47	0	0	0	0
.....................................................................................................TAGGTCCCCTTCAACCAGCTGT...............................................................	22	1	1	49.00	49	30	7	2	10	0	0
.....................................................................................................TTGGGCCCCTGCAACCAGCTGT...............................................................	22	2	1	48.00	48	33	15	0	0	0	0
.....................................................................................................TTGCACCCCTTCAACCAGCTGT...............................................................	22	2	1	48.00	48	31	17	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTTA.............................................................	24	2	1	47.00	47	20	20	6	1	0	0
.....................................................................................................TTGGACCCCTTCAACAAGCTGT...............................................................	22	2	1	47.00	47	39	8	0	0	0	0
.....................................................................................................TTGGTCCCCTTCATCCAGCTGT...............................................................	22	1	1	40.00	40	28	10	0	2	0	0
.....................................................................................................TTGCTCCCCTTCTACCAGCTGT...............................................................	22	2	1	40.00	40	9	31	0	0	0	0
.....................................................................................................TTGTTCCCCTTCAACCAGCTGC...............................................................	22	2	1	40.00	40	0	0	0	40	0	0
.....................................................................................................TTGGTCCCCTTCAACCCGCTGC...............................................................	22	2	1	39.00	39	14	25	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTTG.............................................................	24	1	1	38.00	38	24	10	3	0	1	0
.....................................................................................................TTGGTCCCCTTCAACCAGCGGT...............................................................	22	1	1	37.00	37	27	7	2	1	0	0
......................................................................................................TGGTCCCCTTCAACCAGCTGTT..............................................................	22	1	1	37.00	37	1	0	35	1	0	0
.....................................................................................................TGGGTCCCCGTCAACCAGCTGT...............................................................	22	2	1	36.00	36	23	12	0	1	0	0
....................................................................................................GTTGGTCCCCTTCAACCAGCTGT...............................................................	23	1	1	35.00	35	0	0	35	0	0	0
.......................................................................................................GGTCCCCTTCAACCAGCTG................................................................	19	0	1	34.00	34	0	0	34	0	0	0
.....................................................................................................TTGGTCGCCTTCAACCAGCTGT...............................................................	22	1	1	34.00	34	16	9	1	8	0	0
.....................................................................................................TTGGGCACCTTCAACCAGCTGT...............................................................	22	2	1	33.00	33	22	11	0	0	0	0
....................................................................................................TTTGGTCCCCTTCAACCAGCTGT...............................................................	23	0	1	33.00	33	0	0	32	1	0	0
.....................................................................................................TTGGTCCCCTACAACCAGCTGT...............................................................	22	1	1	32.00	32	16	10	3	2	1	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGCT..............................................................	23	2	1	32.00	32	15	17	0	0	0	0
.....................................................................................................TTGGTCCCCTTCACCCAGCTGC...............................................................	22	2	1	32.00	32	22	10	0	0	0	0
....................................................................................................CTTGGTCCCCTTCAACCAGCTG................................................................	22	1	1	32.00	32	0	0	28	4	0	0
.....................................................................................................TTGGTCCCCTTCCACCAGCTGTT..............................................................	23	2	1	32.00	32	5	27	0	0	0	0
....................................................................................................ATTGGTCCCCTTCAACCAGCTGT...............................................................	23	1	1	31.00	31	4	1	26	0	0	0
.....................................................................................................TGGCTCCCCTTCAACCAGCTGT...............................................................	22	2	1	31.00	31	16	14	0	1	0	0
.....................................................................................................TTGGACCCCTTCAACCAGCTGC...............................................................	22	2	1	30.00	30	17	3	0	10	0	0
.....................................................................................................TTGGACACCTTCAACCAGCTGT...............................................................	22	2	1	30.00	30	23	7	0	0	0	0
.....................................................................................................TGGGTCCCCTGCAACCAGCTGT...............................................................	22	2	1	30.00	30	22	8	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTG..............................................................	23	1	1	30.00	30	2	4	24	0	0	0
.....................................................................................................TGCGTCCCCTTCAACCAGCTGT...............................................................	22	2	1	29.00	29	2	0	0	27	0	0
.....................................................................................................TTGGCCCCCTTCAACCAGCTGC...............................................................	22	2	1	28.00	28	21	6	0	1	0	0
........................................................................................................GTCCCCTTCAACCAGCTGT...............................................................	19	0	1	28.00	28	14	4	6	2	2	0
.....................................................................................................TGGGTCCACTTCAACCAGCTGT...............................................................	22	2	1	27.00	27	13	1	0	13	0	0
.....................................................................................................TGGGTCCCCTTCAACCAGCTGTT..............................................................	23	2	1	26.00	26	9	3	0	14	0	0
.....................................................................................................TTGGGCCCCTTCCACCAGCTGT...............................................................	22	2	1	26.00	26	6	20	0	0	0	0
.....................................................................................................TGGGCCCCCTTCAACCAGCTGT...............................................................	22	2	1	26.00	26	17	6	0	3	0	0
.....................................................................................................TTGGTCCCCTTCCACCAGCTG................................................................	21	1	1	25.00	25	0	23	1	1	0	0
.....................................................................................................TGGCACCCCTTCAACCAGCTGT...............................................................	22	3	1	25.00	25	19	6	0	0	0	0
...............................................................ATTTGGTTGACATCGGGTCAGAT....................................................................................................	23	1	1	24.00	24	0	0	0	24	0	0
.....................................................................................................TTGGACTCCTTCAACCAGCTGT...............................................................	22	2	1	24.00	24	19	5	0	0	0	0
.....................................................................................................TGGGTCCCCGGCAACCAGCTGT...............................................................	22	3	1	24.00	24	18	6	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCCG...................................................................	18	1	1	24.00	24	5	19	0	0	0	0
.....................................................................................................TGGGTCCCCTTCAACCAGCTGG...............................................................	22	2	1	24.00	24	12	12	0	0	0	0
.....................................................................................................TGGGGCCCCTTCAACCAGCTGT...............................................................	22	2	1	24.00	24	19	5	0	0	0	0
...............................................................AGTTGGTTGACATCGGGTCAG......................................................................................................	21	0	1	23.00	23	14	6	1	1	1	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTGT.............................................................	24	2	1	22.00	22	13	9	0	0	0	0
....................................................................................................TTTGGTCCCCTTCAACCAGCTG................................................................	22	0	1	21.00	21	0	0	21	0	0	0
.....................................................................................................TTGGTCCCCTTCCACCAGCTGC...............................................................	22	2	1	20.00	20	4	9	0	7	0	0
.....................................................................................................TTGGTCCCCTTCAACCCGCCGT...............................................................	22	2	1	19.00	19	3	16	0	0	0	0
.....................................................................................................TTGGTCCCCTTCCCCCAGCTGT...............................................................	22	2	1	19.00	19	1	18	0	0	0	0
...............................................................AGTTGGTTGACATCGGGTCA.......................................................................................................	20	0	1	19.00	19	8	3	3	0	5	0
.....................................................................................................TTGGACCCCTTCTACCAGCTGT...............................................................	22	2	1	19.00	19	10	9	0	0	0	0
.........................................................................................................TCCCCTTCAACCAGCTGT...............................................................	18	0	1	19.00	19	5	5	9	0	0	0
.....................................................................................................TGGTTCCCCTTCAACCAGCTGC...............................................................	22	3	1	19.00	19	0	0	0	19	0	0
.....................................................................................................TTGGACTCCTTCAACAAGCTGT...............................................................	22	3	1	18.00	18	15	3	0	0	0	0
.....................................................................................................TGGGACCCCTTCTACCAGCTGT...............................................................	22	3	1	18.00	18	9	9	0	0	0	0
....................................................................................................ATTGGTCCCCTTCAACCAGCTG................................................................	22	1	1	18.00	18	0	0	18	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCCGCTTT...............................................................	22	2	1	18.00	18	9	9	0	0	0	0
.....................................................................................................TTGGGCCCCTTCAACCCGCTGT...............................................................	22	2	1	18.00	18	3	15	0	0	0	0
.....................................................................................................TAGGACCCCTTCAACCAGCTGT...............................................................	22	2	1	18.00	18	17	1	0	0	0	0
.....................................................................................................CTGGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	17.00	17	4	7	0	6	0	0
....................................................................................................GTTGGTCCCCTTCAACCAGCTG................................................................	22	1	1	17.00	17	0	0	17	0	0	0
.....................................................................................................TTGGACCCCTTCAACCAGCTGTT..............................................................	23	2	1	17.00	17	17	0	0	0	0	0
.....................................................................................................TTGCTCCCCTTCAACCAGCTTT...............................................................	22	2	1	17.00	17	5	12	0	0	0	0
.....................................................................................................TGGCTCCCCTTCTACCAGCTGT...............................................................	22	3	1	17.00	17	5	12	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCCTCTGT...............................................................	22	2	1	17.00	17	7	10	0	0	0	0
.....................................................................................................TTGGTCCCCTTCACCCAGCTGTT..............................................................	23	2	1	16.00	16	4	12	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCCG................................................................	21	1	1	16.00	16	6	8	2	0	0	0
.....................................................................................................TTGGGCCCCTTCAACCAGCT.................................................................	20	1	1	15.00	15	9	6	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTTTT............................................................	25	3	1	15.00	15	11	3	1	0	0	0
.....................................................................................................TTGGTCCCCATCAACCAGCTGT...............................................................	22	1	1	15.00	15	9	3	1	1	1	0
.....................................................................................................TTGGTCCACTTCAACCAGCTGC...............................................................	22	2	1	15.00	15	7	2	0	6	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTAA.............................................................	24	1	1	15.00	15	3	6	6	0	0	0
.....................................................................................................TTGGACCCCTTCAACCAGCT.................................................................	20	1	1	15.00	15	13	1	1	0	0	0
.....................................................................................................TGGGTCCCCTTCCACCAGCTGT...............................................................	22	2	1	14.00	14	0	4	0	10	0	0
.....................................................................................................TGGGTCCCCTTCATCCAGCTGT...............................................................	22	2	1	14.00	14	7	3	0	4	0	0
.....................................................................................................TTGGGCCCCTTCAACCAGCTGC...............................................................	22	2	1	14.00	14	8	3	0	3	0	0
.....................................................................................................TTGGCCCCCTTCAACCCGCTGT...............................................................	22	2	1	14.00	14	3	11	0	0	0	0
...............................................................AGTTGGTTGACATCGGGTCAGAC....................................................................................................	23	1	1	14.00	14	0	0	0	13	0	1
.....................................................................................................TTTGTCCCCTTCAACCCGCTGT...............................................................	22	2	1	14.00	14	4	10	0	0	0	0
.....................................................................................................TGGGTCCCATTCAACCAGCTGT...............................................................	22	2	1	14.00	14	9	1	0	3	0	1
....................................................................................................CTTGGTCCCCTTCAACCAGCTGC...............................................................	23	2	1	14.00	14	1	0	0	13	0	0
.....................................................................................................TTGGGCCCCTTCAACCAGCTGTT..............................................................	23	2	1	14.00	14	7	7	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCCGCTGTTT.............................................................	24	3	1	14.00	14	1	13	0	0	0	0
.....................................................................................................TTGGTCACCTTCAACAAGCTGT...............................................................	22	2	1	13.00	13	10	3	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCAGT...............................................................	22	1	1	13.00	13	7	5	0	0	1	0
.....................................................................................................TTAGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	13.00	13	5	2	0	6	0	0
.....................................................................................................TGGGTCCCCTTCAACCCGCTGT...............................................................	22	2	1	13.00	13	2	11	0	0	0	0
.....................................................................................................TTGCTCCCCTTCTACCAGCTTT...............................................................	22	3	1	13.00	13	0	13	0	0	0	0
.....................................................................................................TTGGACCCCTTCAACCAGCTG................................................................	21	1	1	13.00	13	7	2	4	0	0	0
.....................................................................................................TTGGTCCCCTTCCACCAGCT.................................................................	20	1	1	13.00	13	0	13	0	0	0	0
.....................................................................................................TTGCACACCTTCAACCAGCTGT...............................................................	22	3	1	13.00	13	8	5	0	0	0	0
......................................................................................................TTGTCCCCTTCAACCAGCTGC...............................................................	21	2	1	13.00	13	0	0	0	13	0	0
.....................................................................................................TGGGTCCCCGTCTACCAGCTGT...............................................................	22	3	1	13.00	13	3	10	0	0	0	0
.....................................................................................................TTGGTCCCCTGCTACCAGCTGT...............................................................	22	2	1	13.00	13	5	8	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCATCTG................................................................	21	1	1	13.00	13	1	8	2	1	1	0
.....................................................................................................ATGGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	13.00	13	4	3	0	6	0	0
.....................................................................................................TTGGTCCCCGGCAACCAGCTGT...............................................................	22	2	1	13.00	13	6	7	0	0	0	0
.....................................................................................................TAGGACACCTTCAACCAGCTGT...............................................................	22	3	1	13.00	13	13	0	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAAACAGCTGC...............................................................	22	2	1	13.00	13	3	1	0	9	0	0
.....................................................................................................TGCGTCCCCTTCAACCAGCTGC...............................................................	22	3	1	13.00	13	0	0	0	13	0	0
.....................................................................................................TTGGTCCCCTTCAAACAGCTG................................................................	21	1	1	13.00	13	1	2	4	6	0	0
.....................................................................................................TTGGTCCCCTTCAACTAGCTGC...............................................................	22	2	1	13.00	13	2	0	0	11	0	0
.....................................................................................................TTGGTCCCGTTCAACCAGCTGT...............................................................	22	1	1	13.00	13	6	5	0	1	1	0
.....................................................................................................TTGGTCCCCTTCACCCAGCTG................................................................	21	1	1	12.00	12	2	10	0	0	0	0
.....................................................................................................TTGGCCCCCTTCAACCAGCTGTT..............................................................	23	2	1	12.00	12	10	2	0	0	0	0
.....................................................................................................TAGGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	12.00	12	5	0	0	7	0	0
.....................................................................................................TGGGTGCCCTTCAACCAGCTGT...............................................................	22	2	1	12.00	12	7	5	0	0	0	0
.....................................................................................................TTGGAACCCTTCAACCAGCTGT...............................................................	22	2	1	12.00	12	9	3	0	0	0	0
.....................................................................................................TTTGTCCCCTTCAACCAGCTTT...............................................................	22	2	1	12.00	12	2	10	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCCGC...............................................................	22	2	1	12.00	12	4	3	0	5	0	0
.....................................................................................................TTGGGCCCCTTCAACCAGCTG................................................................	21	1	1	12.00	12	7	2	3	0	0	0
.....................................................................................................TTGGTCCCCTTCACCCAGCT.................................................................	20	1	1	12.00	12	6	6	0	0	0	0
.....................................................................................................TTGGTCCCCTTCCACCCGCTGTT..............................................................	23	3	1	12.00	12	1	11	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACAAGATGT...............................................................	22	2	1	12.00	12	7	5	0	0	0	0
.....................................................................................................GTGGGCCCCTTCAACCAGCTGT...............................................................	22	2	1	12.00	12	7	5	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACACGCTGT...............................................................	22	2	1	12.00	12	3	9	0	0	0	0
.....................................................................................................TTGCACCCCTTCAACCAGCTTT...............................................................	22	3	1	11.00	11	3	8	0	0	0	0
.....................................................................................................TTGGGCCCCTTCAACCGGCTGT...............................................................	22	2	1	11.00	11	10	1	0	0	0	0
.....................................................................................................TTGGTGCCCTTCTACCAGCTGT...............................................................	22	2	1	11.00	11	4	7	0	0	0	0
.....................................................................................................TTGGCCCCCTTCAACCAGCTG................................................................	21	1	1	11.00	11	4	3	4	0	0	0
.....................................................................................................TTGGTCACCTTCAACCAGCGGT...............................................................	22	2	1	11.00	11	8	3	0	0	0	0
.....................................................................................................TTAGACCCCTTCAACCAGCTGT...............................................................	22	2	1	11.00	11	7	4	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGGTGT...............................................................	22	1	1	11.00	11	7	4	0	0	0	0
.....................................................................................................TTGCTCCCCTTCAACCAGCTGC...............................................................	22	2	1	11.00	11	6	3	0	2	0	0
.....................................................................................................TTGGTCCACTTCAAACAGCTGT...............................................................	22	2	1	11.00	11	5	4	0	1	0	1
.....................................................................................................CTGGTCCCCTTCAACCAGCTG................................................................	21	1	1	11.00	11	4	0	6	1	0	0
.....................................................................................................TTGGGCGCCTTCAACCAGCTGT...............................................................	22	2	1	11.00	11	8	3	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGGT..............................................................	23	2	1	11.00	11	2	9	0	0	0	0
.....................................................................................................TTGGTCCCCTTTAACCAGCTG................................................................	21	1	1	11.00	11	0	2	8	1	0	0
.....................................................................................................TTGGGCCCCTTAAACCAGCTGT...............................................................	22	2	1	10.00	10	3	7	0	0	0	0
.....................................................................................................TGGGACCCCGTCAACCAGCTGT...............................................................	22	3	1	10.00	10	5	4	0	0	0	1
.....................................................................................................TTGGTCCCCTTCTACCAGCTTT...............................................................	22	2	1	10.00	10	3	7	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCATCTGC...............................................................	22	2	1	10.00	10	3	3	0	4	0	0
.....................................................................................................TTGGTCCCCTTAAACCAGCTG................................................................	21	1	1	10.00	10	0	0	10	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCGGCTG................................................................	21	1	1	10.00	10	0	3	5	2	0	0
.....................................................................................................TTGGTCCGCGTCAACCAGCTGT...............................................................	22	2	1	10.00	10	6	4	0	0	0	0
.....................................................................................................TGGGTCCCCTTCAAACAGCTGT...............................................................	22	2	1	10.00	10	3	3	0	4	0	0
.....................................................................................................TTGGGCCCCGTCAACCAGCTGT...............................................................	22	2	1	10.00	10	6	4	0	0	0	0
.....................................................................................................TTGGTACCCTTCAACCAGCTGC...............................................................	22	2	1	10.00	10	7	3	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCCGCTCT...............................................................	22	2	1	10.00	10	6	4	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTGTAT.............................................................	24	1	1	10.00	10	4	4	2	0	0	0
.....................................................................................................TTGGACCCCTGCAACCAGCTGT...............................................................	22	2	1	10.00	10	8	2	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACGAGCTGT...............................................................	22	1	1	10.00	10	5	3	2	0	0	0
......................................................................................................TGGTCCCCTTCGACCAGCTGT...............................................................	21	1	1	10.00	10	0	0	10	0	0	0
......................................................................................................TGGTCCCCTTCAACCAGC..................................................................	18	0	1	10.00	10	0	0	10	0	0	0
.....................................................................................................TTGGTCCCCTTCACCCCGCTGTT..............................................................	23	3	1	9.00	9	2	7	0	0	0	0
.....................................................................................................TTAGTCACCTTCAACCAGCTGT...............................................................	22	2	1	9.00	9	4	5	0	0	0	0
.....................................................................................................TTGGACCCCCTCAACCAGCTGT...............................................................	22	2	1	9.00	9	7	2	0	0	0	0
.....................................................................................................TTGCTCCCCTTCAACCAGCTG................................................................	21	1	1	9.00	9	3	3	2	1	0	0
.....................................................................................................TGGGACCCATTCAACCAGCTGT...............................................................	22	3	1	9.00	9	8	1	0	0	0	0
...................................................................................................TCTTGGTCCCCTTCAACCAGCTGT...............................................................	24	2	1	9.00	9	4	2	0	2	1	0
.....................................................................................................TTAGTCCCCTTCAACCAGCTGTT..............................................................	23	2	1	9.00	9	3	6	0	0	0	0
.....................................................................................................TTGGTCTCCTTCAACAAGCTGT...............................................................	22	2	1	9.00	9	5	4	0	0	0	0
.....................................................................................................TTGGTCCCCTTCACACAGCTGT...............................................................	22	2	1	9.00	9	6	3	0	0	0	0
.....................................................................................................TGGGTCCCCTTCAACCAGCT.................................................................	20	1	1	9.00	9	3	4	0	2	0	0
.....................................................................................................TTGGTCACCGTCAACCAGCTGT...............................................................	22	2	1	9.00	9	8	1	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAAGCAGCTGT...............................................................	22	1	1	9.00	9	3	5	0	1	0	0
.....................................................................................................TTGCTCCCCTGCAACCAGCTGT...............................................................	22	2	1	9.00	9	5	4	0	0	0	0
.....................................................................................................TTGGTCCCCTTCTACCAGCTG................................................................	21	1	1	9.00	9	3	6	0	0	0	0
.....................................................................................................TGGGTGCCCTTCTACCAGCTGT...............................................................	22	3	1	9.00	9	7	2	0	0	0	0
.....................................................................................................TTGGTCCCCCTCAACCAGCTGC...............................................................	22	2	1	9.00	9	4	2	0	3	0	0
.....................................................................................................TCGGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	9.00	9	2	1	0	6	0	0
.....................................................................................................TGGGACCCCTGCAACCAGCTGT...............................................................	22	3	2	8.50	17	14	3	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAAAAAGCTGT...............................................................	22	2	1	8.00	8	5	3	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTCC...............................................................	22	2	1	8.00	8	4	2	0	2	0	0
.................................................................................................GATCTTGGTCCCCTTCAACCAGCTGT...............................................................	26	2	1	8.00	8	0	0	0	8	0	0
.....................................................................................................TTTGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	8.00	8	2	4	0	2	0	0
.....................................................................................................TGGGTCCCCTTCTACCTGCTGT...............................................................	22	3	1	8.00	8	4	4	0	0	0	0
.....................................................................................................TGGGTCCCCTTCAACTAGCTGT...............................................................	22	2	1	8.00	8	3	1	0	4	0	0
.....................................................................................................TTAATCCCCTTCAACCAGCTGT...............................................................	22	2	1	8.00	8	0	8	0	0	0	0
.....................................................................................................TTGGTCCCCTCCAACCCGCTGT...............................................................	22	2	1	8.00	8	2	6	0	0	0	0
.....................................................................................................TAGGACTCCTTCAACCAGCTGT...............................................................	22	3	1	8.00	8	8	0	0	0	0	0
.....................................................................................................TTGGTCCCCTTCGACCAGCTG................................................................	21	1	1	8.00	8	3	1	4	0	0	0
.....................................................................................................TTGGTCCCCTTCTACCTGCTGT...............................................................	22	2	1	8.00	8	3	5	0	0	0	0
.....................................................................................................TTGGTCCCCGTCTACCAGCTGT...............................................................	22	2	1	8.00	8	1	7	0	0	0	0
.....................................................................................................TTGCACCCCTTCTACCAGCTGT...............................................................	22	3	2	8.00	16	5	11	0	0	0	0
.....................................................................................................TTCGTCCCCTTCAACCAGCTG................................................................	21	1	1	8.00	8	0	0	1	7	0	0
........................................................................................................GTCCCCTTCAACCAGCTG................................................................	18	0	1	8.00	8	1	0	7	0	0	0
.....................................................................................................TTGGTCCCCGTCACCCAGCTGT...............................................................	22	2	1	8.00	8	6	2	0	0	0	0
.....................................................................................................TTGGGCCCCTTCAACCAGCTCT...............................................................	22	2	1	8.00	8	5	3	0	0	0	0
.....................................................................................................TTGGACCCCTTCCACCAGCTGT...............................................................	22	2	1	8.00	8	6	2	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCACCTGC...............................................................	22	2	1	8.00	8	2	2	0	4	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTC................................................................	21	1	1	8.00	8	2	2	2	2	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTA................................................................	21	1	1	8.00	8	2	3	3	0	0	0
.....................................................................................................TTGGTCCCCTTCTACCAGCTGC...............................................................	22	2	1	8.00	8	4	4	0	0	0	0
.....................................................................................................TTGGACCCCTTCAACCATCTGT...............................................................	22	2	1	8.00	8	6	2	0	0	0	0
.....................................................................................................TTGGGCCCCTTCAACCATCTGT...............................................................	22	2	1	8.00	8	6	2	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCAGCTTTT..............................................................	23	2	1	8.00	8	1	5	1	0	1	0
.....................................................................................................TTGGGCCCGTTCAACCAGCTGT...............................................................	22	2	1	8.00	8	6	2	0	0	0	0
.....................................................................................................TAGGACCCCTTCAACAAGCTGT...............................................................	22	3	1	8.00	8	8	0	0	0	0	0
...............................................................AGCTGGTTGACATCGGGTCAGAT....................................................................................................	23	1	1	8.00	8	0	3	0	5	0	0
.....................................................................................................TTGGTCCCCTTCAACCATCTGTT..............................................................	23	2	1	8.00	8	3	4	1	0	0	0
......................................................................................................TGGTCCCCTTCCACCAGCTGT...............................................................	21	1	1	8.00	8	0	3	5	0	0	0
.....................................................................................................TTGGTCCCCTTCCACCATCTGT...............................................................	22	2	1	8.00	8	2	6	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCATCTTT...............................................................	22	2	2	7.50	15	4	11	0	0	0	0
.....................................................................................................TTGGTCCCCTTCACCCCGCTGC...............................................................	22	3	1	7.00	7	5	2	0	0	0	0
.....................................................................................................TTGCTCCCCTTCAACCCGCTGT...............................................................	22	2	1	7.00	7	1	6	0	0	0	0
.....................................................................................................TTGGTCCGCTTCACCCCGCTGT...............................................................	22	3	1	7.00	7	6	1	0	0	0	0
......................................................................................................TGGTCCCCTTCAACCAGCTGTTT.............................................................	23	2	1	7.00	7	0	0	7	0	0	0
.....................................................................................................TTGCTCCCCTTCAACCTGCTGT...............................................................	22	2	1	7.00	7	4	3	0	0	0	0
.....................................................................................................TTGGTCCCCTTCCACCACCTGT...............................................................	22	2	1	7.00	7	3	3	0	0	0	1
.....................................................................................................TTGGTCCCCTTCACCCAGCCGT...............................................................	22	2	1	7.00	7	4	3	0	0	0	0
.....................................................................................................TCGGTCCCCTTCAACCAGCTG................................................................	21	1	1	7.00	7	3	1	3	0	0	0
.....................................................................................................TTGGTCCCCTTCAACCCCCTGT...............................................................	22	2	1	7.00	7	4	3	0	0	0	0
.....................................................................................................TTGGTCACCTTCAACCAGCTGTT..............................................................	23	2	1	7.00	7	3	4	0	0	0	0
.....................................................................................................TTGGTCCCCTTCAACAAGCTG................................................................	21	1	1	7.00	7	4	3	0	0	0	0
.....................................................................................................TTGGTCCCCTTCCACCAGCTGG...............................................................	22	2	1	7.00	7	1	6	0	0	0	0
.....................................................................................................GTGGTCCCCTTCAACCAGCTGC...............................................................	22	2	1	7.00	7	1	2	0	4	0	0
.....................................................................................................TTGGTCGCCTTCAACCAGCTGC...............................................................	22	2	1	7.00	7	1	1	0	5	0	0
.....................................................................................................TTGGTCCCCCTCCACCAGCTGT...............................................................	22	2	1	7.00	7	0	7	0	0	0	0
.....................................................................................................TTGGTCCGCTTCAACCAGCTGC...............................................................	22	2	1	7.00	7	3	3	0	1	0	0
.....................................................................................................TTGGTACACTTCAACCAGCTGT...............................................................	22	2	1	7.00	7	3	4	0	0	0	0
.....................................................................................................TTGGTCCCCGTCAACCAGCT.................................................................	20	1	1	7.00	7	3	4	0	0	0	0
.....................................................................................................TTGGACCCCTTCAACCCGCTGT...............................................................	22	2	1	7.00	7	5	2	0	0	0	0
.....................................................................................................TTGGCCCCATTCAACCAGCTGT...............................................................	22	2	1	7.00	7	4	3	0	0	0	0

Species	Coordinate	ID	Type	Alignment
droMoj3	scaffold_6500:24707627-24707812 +	dmo-mir-133	Known_mirbase	A----A-----TTCTAAAA-----------------------ACATGAAA--------TAA-----------------ATTGTGTTGT-GTACTCAAACA-------AACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGTTT---TTCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAGTTGAGAT----------------------GAATA-----------------------TATAATGAACC----GTA------------------------AAAATAAAGATGGGA
droVir3	scaffold_12963:13475746-13475919 -	dvi-mir-133	Known_mirbase	T----G-----AACCAAACGAAG---------------ATATATATT---------GCCAA------------------------TCG-AAT---------------CACATTCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTATTT--CTGAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA-------G---------------------TGAACG-AAAA------------------AAAAAAAAACC----TTA------------------------A---CAAAAGTGAAA
droGri2	scaffold_15126:6389839-6389969 +	dgr-mir-133	Known_mirbase	A----A-----AACTATAT-----------------------ACATG---------ATTAA------------------------TTT-GAA---------------TTTATTTACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--ATTCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAAGT-----------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004521:2027478-2027686 +	dwi-mir-133	Known_mirbase	A----A-----ATATAAAA-AG------------------------GAAATACGCTGACGATGATGATGATGGTGACAATGATGATGTGAAT-T-------------ATT-TTTACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTATTT-ATTTGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAAGCAAT---------------------GGAAAA-----------------------TTTAATACAGAAAGTGAA------------------------AAACAAAACATGCCA
dp5	4_group3:7699961-7700137 -	dps-mir-133	Known_mirbase	C----T------------------GTGTAT--------TTGTATGTG---------ACGCG------------------------TGT-GTG---------------CTTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAGGTGCCAACAAATAA-----TAAAGTGAA-----------------------------------------------------------------AAAAATATAAAA
droPer2	scaffold_1:9145679-9145864 -	dpe-mir-133	Known_mirbase	A----T-----TTGTATGTGTAT---------------TTGTATGTG---------ACGCG------------------------TGT-GTG---------------CTTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAGGCGCCAACAAATAATAAAGTGAACA-------------------------------------------------------------------AAAAAATATAAAA
droAna3	scaffold_12916:7117498-7117621 +	dan-mir-133	Known_mirbase	T----G------------------ATTTAATTTTT-C---------------------------------------------------------------GTGAATGATTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATCT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAA-------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396566:293440-293605 +			CATTTG------------------ATTTAATTTTT-T---------------------------------------------------------------GTGAATGATTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTACGT-TTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGTACAAG---------------------TGAAAAGTGATTTATT--CA-------------------------------------------------------AAAATATACAT
droKik1	scf7180000302408:807313-807417 +			T----------------------------------------------------------------------------------------------------------ATTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTACTG-TTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACGA-------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453842:123965-124102 +			T-------------------------------------------------------------------------------------------------------------ATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-TTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAACCCGAG---------------------TGAACTGTGATAGATGG-CAAACATA----------------------------------------------------------AA
droEle1	scf7180000491186:607676-607840 +			A---------------------------------------------------------------------------------------------------ACAAATTATTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTATTT-TTTCAAAGTATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAATACGAG---------------------TGAACTGTGATAGATGG-CAATCACAAAA-----------GACTG----CCT--------------------------ATATGCCA
droRho1	scf7180000777920:26474-26621 +			A---------------------------------------------------------------------------------------------------ACAAATTATTATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTATTT-TTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAATACGAG---------------------TGAACTGTGATCGATGG-CAAACACA----------------------------------------------------------AA
droBia1	scf7180000302422:7475065-7475218 -			T----------------------CGCGATG---TTT----------------------------------------------------------------A-AAATCATTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACAGCGGAGTACGAG---------------------TGAACTGTGATAAATGG-CAAACATA------------------------------------------------------------
droTak1	scf7180000415104:189953-190107 -			T----GAAATT------------CGCGATA---TTT----------------------------------------------------------------AAAAATGATTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACTCGACACTAG---------------------TGAACTGTGATAGATGG-------------------------------------------------------------------CA
droEug1	scf7180000409767:678665-678832 -			T----------------------TGCGATT---TTCCA--------------------------------------------------------------GAAAATGATTATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTTTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTCGTTGACAACGAATTTCGAG---------------------TGAAACGTGATAGATGGTCAAACATA----------------------------------------------------AATTGTGA
dm3	chr2L:20616596-20616768 +	dme-mir-133	Known_mirbase	T----------------------CACCGCA---TTC----------------------------------------------------------------GAGAATTTCCACCTGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAG---------------------TGAACTGCGATGGATTA-----------------------------------------CCATTTT-CCATGGACTAAAAGGTGAGC
droSim2	2l:20064868-20064988 +	dsi-mir-133	Known_mirbase	T----------------------CGCCGCA---TTC----------------------------------------------------------------AAAAATCTGCACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TTTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGA-------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_18:496880-496980 +	dse-mir-133	Known_mirbase	C-------------------------------------------------------------------------------------------------------------ACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TTTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGA-------------------------------------------------------------------------------------------------------------------
droYak3	2R:6964810-6964976 +	dya-mir-133	Known_mirbase	----------------------------------------------------------------------------------------------------------------CTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--TTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGTACGAG---------------------TAAACTGTGATAGACAG------------------------ACTGAAAGCGTAAATTACTATTTTTTCA--AACAAAAATGTGGGA
droEre2	scaffold_4845:3836586-3836719 -	der-mir-133	Known_mirbase	C-------------------------------------------------------------------------------------------------------------CTCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TCCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAATTCGAG---------------------TGAACTGTGCACTGTGA-CCTG--TG----------------------------------------------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

A----A-----TTCTAAAA-----------------------ACATGAAA--------TAA-----------------ATTGTGTTGT-GTACTCAAACA-------AACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGTTT---TTCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAGTTGAGAT----------------------GAATA-----------------------TATAATGAACC----GTA------------------------AAAATAAAGATGGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	135967.00	135967	18377	728	44606	53267	9038	9951
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	11059.00	11059	8109	9	1119	1355	334	133
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	4298.00	4298	465	7	1616	1972	90	148
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	3409.00	3409	1117	0	980	1169	5	138
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	2980.00	2980	11	4	136	281	2539	9
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	1538.00	1538	1449	2	30	39	16	2
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	646.00	646	645	0	0	1	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-......................................................................................................................................	24	1	468.00	468	53	2	187	218	1	7
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	467.00	467	5	1	178	213	0	70
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	268.00	268	56	3	94	100	7	8
.................................................................................................................................AGTTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	222.00	222	13	17	47	69	59	17
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	181.00	181	10	0	70	80	14	7
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	144.00	144	100	0	11	3	30	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	123.00	123	11	1	60	45	5	1
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	110.00	110	60	0	23	22	1	4
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	89.00	89	24	0	24	29	9	3
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	77.00	77	3	0	28	26	14	6
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	77.00	77	75	0	1	1	0	0
.................................................................................................................................AGTTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	72.00	72	1	22	9	18	17	5
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA-......................................................................................................................................	24	1	47.00	47	6	0	20	20	1	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	37.00	37	35	0	0	1	1	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	34.00	34	34	0	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	33.00	33	32	0	0	0	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGCT........................................................................................................................................	23	1	32.00	32	0	0	17	15	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	30.00	30	24	0	4	2	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	28.00	28	6	0	4	14	2	2
.................................................................................................................................AGTTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	23.00	23	1	0	6	14	1	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTGT-......................................................................................................................................	24	1	22.00	22	0	0	9	13	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	21.00	21	21	0	0	0	0	0
.................................................................................................................................AGTTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	19.00	19	3	0	3	8	0	5
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	19.00	19	9	0	5	5	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-T.....................................................................................................................................	25	1	15.00	15	1	0	3	11	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA-......................................................................................................................................	24	1	15.00	15	6	0	6	3	0	0
.................................................................................................................................AGTTGGTTGACATCGGGTCAGAC.................................................................................................................................................................................	23	1	14.00	14	0	1	0	0	13	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGGT........................................................................................................................................	23	1	11.00	11	0	0	9	2	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAT-......................................................................................................................................	24	1	10.00	10	2	0	4	4	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGC............................................................................................................................................	18	1	10.00	10	10	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTCC.........................................................................................................................................	22	1	8.00	8	0	0	2	4	2	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTG..........................................................................................................................................	18	1	8.00	8	7	0	0	1	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	8.00	8	2	0	2	2	2	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	8.00	8	3	0	3	2	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTTT-......................................................................................................................................	23	1	7.00	7	7	0	0	0	0	0

droVir3

T----G-----AACCAAACGAAG---------------ATATATATT---------GCCAA------------------------TCG-AAT---------------CACATTCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTATTT--CTGAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA-------G---------------------TGAACG-AAAA------------------AAAAAAAAACC----TTA------------------------A---CAAAAGTGAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	102659.00	102659	305	3427	6576	8110	1	10	4	2	2	2	0	3	4	5	12273	6919	2885	6627	8044	3959	34	12976	9827	10	1	7	8	14	28	31	9	25	13	29	2	15	16	35	4	12	8	13	11	0	0	0	0	0	0	0	1	0	1	1	1	13	5	251	385	1062	12031	5119	0	3	10	113	112	49	30	644	18	31	25	31	24	87	88	110	128
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	20955.00	20955	952	3180	6257	514	0	0	0	0	0	0	0	0	0	0	1558	978	357	696	985	540	1	1627	1064	0	0	0	0	1	3	4	0	4	1	3	0	0	1	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	5	239	44	17	1291	113	0	0	1	13	19	5	4	371	0	0	4	1	2	25	23	31	15
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	4737.00	4737	4	42	925	9	0	0	0	0	0	0	0	0	0	0	263	175	130	192	333	150	0	473	218	0	0	0	0	0	1	0	0	1	0	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	1	1692	107	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	2652.00	2652	34	567	3	1826	0	0	0	0	0	0	0	0	0	0	20	7	4	14	4	5	0	15	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	124	7	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	2401.00	2401	3	19	181	105	0	0	0	0	0	0	0	0	0	0	274	155	85	182	190	96	0	327	304	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	357	98	0	0	2	0	0	1	0	2	0	0	0	0	0	0	0	0	2
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	839.00	839	62	696	7	1	0	0	0	0	0	0	0	0	0	0	6	1	3	6	6	1	0	4	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	19	17	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	606.00	606	3	0	539	6	0	0	0	0	0	0	0	0	0	0	8	4	0	5	3	0	0	12	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	14	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	497.00	497	0	0	494	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	334.00	334	9	18	7	14	0	1	1	0	0	0	0	0	0	0	33	21	13	35	11	10	0	20	28	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	21	66	11	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	254.00	254	0	7	29	6	0	0	0	0	0	0	0	0	0	0	31	22	11	10	15	12	0	15	19	0	1	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	4	0	0	0	6	7	2	0	4	0	0	1	0	1	3	4	10	6
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	197.00	197	0	0	1	0	0	0	0	0	0	0	0	0	0	0	18	7	8	16	13	11	1	25	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	24	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	148.00	148	0	12	75	8	0	0	0	0	0	0	0	0	0	0	3	3	4	4	3	4	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	7	0	0	0	0	1	2	0	0	3	0	3	0	0	0	1	1	0	2
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-......................................................................................................................................	24	1	146.00	146	0	0	19	0	0	0	0	0	0	0	0	0	0	0	17	12	5	10	4	7	0	17	24	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	106.00	106	0	6	1	12	0	0	0	0	0	0	0	0	0	0	4	4	2	3	1	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	36	13	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	78.00	78	0	0	77	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	75.00	75	0	1	35	6	0	0	0	0	0	0	0	0	0	0	6	0	0	4	6	3	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	62.00	62	0	0	4	12	0	1	0	0	0	0	0	0	0	0	4	1	2	4	5	1	1	3	1	0	0	0	0	0	1	1	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	7	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	52.00	52	1	16	6	1	0	0	0	0	0	0	0	0	0	0	4	0	2	4	1	5	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	52.00	52	0	0	2	9	0	0	0	0	0	0	0	0	0	0	6	2	0	1	3	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	43.00	43	0	0	6	10	0	0	0	0	0	0	0	0	0	0	2	5	3	2	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	41.00	41	0	1	37	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	33.00	33	0	0	21	2	0	0	0	0	0	0	0	0	0	0	3	1	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	33.00	33	2	7	4	0	0	0	0	0	0	1	0	0	0	0	2	2	4	1	1	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA-......................................................................................................................................	24	1	32.00	32	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	3	0	1	0	0	0	0	0	0	4	0	2	2	3
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	26.00	26	0	0	16	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	24.00	24	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	17.00	17	0	8	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA-......................................................................................................................................	24	1	14.00	14	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	3	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	14.00	14	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	14.00	14	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTG..........................................................................................................................................	18	1	13.00	13	0	3	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................ATTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	24	1	11.00	11	0	0	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	11.00	11	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGGT........................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTC-......................................................................................................................................	24	1	8.00	8	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA-A.....................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	2	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCC...........................................................................................................................................	20	1	8.00	8	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCG...........................................................................................................................................	20	1	8.00	8	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA-A.....................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	2
............................................................................................................................................................................GGTCCCCTTCAACCAGCT...........................................................................................................................................	18	1	6.00	6	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTGT-......................................................................................................................................	24	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	22	1	5.00	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGCT........................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTCT-......................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGTTGGTTGACATCGGGTCAGAC.................................................................................................................................................................................	23	1	4.00	4	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTCC.........................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

A----A-----AACTATAT-----------------------ACATG---------ATTAA------------------------TTT-GAA---------------TTTATTTACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--ATTCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAAGT-----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	3133.00	3133	1785	1348
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	400.00	400	386	14
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	144.00	144	144	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	46.00	46	37	9
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	37.00	37	37	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	36.00	36	33	3
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	12.00	12	12	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	11.00	11	11	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	11.00	11	0	11
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	7.00	7	2	5
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	6.00	6	3	3
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	6.00	6	5	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	5.00	5	5	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	5.00	5	5	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	4.00	4	4	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	4.00	4	4	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	3.00	3	3	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	3.00	3	3	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	3.00	3	2	1
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	2.00	2	2	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	2.00	2	0	2
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-......................................................................................................................................	24	1	2.00	2	2	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	2.00	2	2	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	22	1	1.00	1	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA-......................................................................................................................................	24	1	1.00	1	1	0
........................................................................................................................................................................ATTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	24	1	1.00	1	1	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGC............................................................................................................................................	20	1	1.00	1	1	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGC............................................................................................................................................	18	1	1.00	1	1	0
........................................................................................................................................................................ATTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	23	1	1.00	1	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	1.00	1	1	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTTA-......................................................................................................................................	23	1	1.00	1	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	1.00	1	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAG-......................................................................................................................................	24	1	1.00	1	1	0
.........................................................................................................................................................TATTT--ATTCGAGTATTTGGT..........................................................................................................................................................	20	1	1.00	1	0	1

droWil2

A----A-----ATATAAAA-AG------------------------GAAATACGCTGACGATGATGATGATGGTGACAATGATGATGTGAAT-T-------------ATT-TTTACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTATTT-ATTTGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAAGCAAT---------------------GGAAAA-----------------------TTTAATACAGAAAGTGAA------------------------AAACAAAACATGCCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	88980.00	88980	20802	6100	6492	22244	33342
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	22830.00	22830	16564	2551	103	409	3203
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	7488.00	7488	192	440	108	111	6637
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	4337.00	4337	317	35	56	2704	1225
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	2863.00	2863	2725	4	10	38	86
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	2737.00	2737	2721	6	1	3	6
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	2350.00	2350	175	7	8	1688	472
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	868.00	868	0	0	49	206	613
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	490.00	490	14	404	9	16	47
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	282.00	282	32	24	10	51	165
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	279.00	279	19	1	1	78	180
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	163.00	163	4	154	0	0	5
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	121.00	121	29	22	2	18	50
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	112.00	112	100	10	1	0	1
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	104.00	104	85	3	0	1	15
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	84.00	84	1	6	2	5	70
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	83.00	83	9	6	5	4	59
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	41.00	41	6	20	2	7	6
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	38.00	38	0	31	0	0	7
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	37.00	37	30	4	1	1	1
.................................................................................................................................AGCTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	28.00	28	1	3	0	5	19
.............................................................................................................................................................................GTCCCCTTCAACCAGCTG..........................................................................................................................................	18	1	26.00	26	24	2	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCC...........................................................................................................................................	20	1	23.00	23	14	0	0	0	9
.................................................................................................................................AGCTGGTTGACATCGGGTCAGG..................................................................................................................................................................................	22	1	20.00	20	20	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGC.........................................................................................................................................	19	1	19.00	19	19	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	18.00	18	5	10	0	0	3
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	16.00	16	5	1	0	0	10
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGG.........................................................................................................................................	19	1	13.00	13	13	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-......................................................................................................................................	24	1	13.00	13	0	2	0	1	10
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	10.00	10	2	6	0	2	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	10.00	10	4	0	0	0	6
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	10.00	10	0	4	1	3	2
.................................................................................................................................AGCTGGTTGACATCGGGTCAGATA................................................................................................................................................................................	24	1	8.00	8	1	0	0	5	2
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAC.................................................................................................................................................................................	23	1	6.00	6	5	0	0	1	0
..................................................................................................................................GCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	22	1	6.00	6	0	2	0	2	2
..............................................................................................................................................................................TCCCCTTCAACCAGCTGC.........................................................................................................................................	18	1	5.00	5	5	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA-......................................................................................................................................	24	1	5.00	5	2	2	0	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCG...........................................................................................................................................	20	1	5.00	5	3	0	0	0	2
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	5.00	5	2	1	0	0	2
..........................................................................................................................................................................TTGGTCCCCTTCAACCAA.............................................................................................................................................	18	1	4.00	4	0	0	0	0	4
.................................................................................................................................AGCTGGTTGACATCGGGT......................................................................................................................................................................................	18	1	4.00	4	0	0	0	2	2
.................................................................................................................................AGCTGGTTGACATCGGGTCAGT..................................................................................................................................................................................	22	1	4.00	4	1	1	0	1	1
.................................................................................................................................AGCTGGTTGACATCGGGTC.....................................................................................................................................................................................	19	1	4.00	4	3	0	0	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCGT..........................................................................................................................................	21	1	4.00	4	0	0	0	1	3
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	4.00	4	0	4	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGATT................................................................................................................................................................................	24	1	4.00	4	0	0	0	3	1

dp5

C----T------------------GTGTAT--------TTGTATGTG---------ACGCG------------------------TGT-GTG---------------CTTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAGGTGCCAACAAATAA-----TAAAGTGAA-----------------------------------------------------------------AAAAATATAAAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	171914.00	171914	19	17041	10443	93933	3811	40548	6085	0	1	33
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	50293.00	50293	67	9244	697	37676	218	2289	100	0	0	2
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	23186.00	23186	0	9	2968	19980	14	210	5	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	3950.00	3950	0	440	45	2625	23	734	82	0	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	3712.00	3712	0	869	7	2175	13	596	52	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	1624.00	1624	0	1198	9	340	12	57	8	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	737.00	737	0	663	0	74	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	372.00	372	0	80	13	238	4	34	3	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	359.00	359	0	50	18	290	0	1	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	338.00	338	0	14	11	287	2	21	3	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	337.00	337	0	55	56	10	150	40	25	0	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCC...........................................................................................................................................	20	1	314.00	314	0	1	1	310	0	2	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	232.00	232	1	7	40	5	148	13	13	0	0	5
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	231.00	231	0	16	10	145	2	50	8	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	211.00	211	0	65	0	136	1	8	1	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	201.00	201	0	1	0	0	9	141	50	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	199.00	199	0	6	3	161	2	20	7	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	96.00	96	2	7	4	27	10	46	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTAC.........................................................................................................................................	22	1	62.00	62	0	0	12	50	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	58.00	58	0	53	0	5	0	0	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	58.00	58	0	39	0	18	0	1	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	21	1	56.00	56	0	0	4	51	0	1	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	51.00	51	0	1	6	42	0	2	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	43.00	43	0	35	0	8	0	0	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	40.00	40	0	25	1	12	0	1	0	0	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	31.00	31	0	13	1	15	0	2	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTTC.........................................................................................................................................	22	1	29.00	29	0	0	2	22	0	5	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	24.00	24	0	6	2	0	12	3	1	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGC.........................................................................................................................................	20	1	23.00	23	0	0	1	21	0	1	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	22.00	22	0	0	0	21	0	1	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	19.00	19	0	16	0	2	0	1	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	18.00	18	0	8	0	9	0	1	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA-......................................................................................................................................	24	1	17.00	17	0	6	0	11	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGCT........................................................................................................................................	23	1	16.00	16	0	0	1	3	0	12	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTC-......................................................................................................................................	24	1	16.00	16	0	1	0	15	0	0	0	0	0	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	13.00	13	0	6	0	3	0	3	1	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTCC.........................................................................................................................................	22	1	11.00	11	0	0	1	9	0	1	0	0	0	0

droPer2

A----T-----TTGTATGTGTAT---------------TTGTATGTG---------ACGCG------------------------TGT-GTG---------------CTTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAGGCGCCAACAAATAATAAAGTGAACA-------------------------------------------------------------------AAAAAATATAAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	119711.00	119711	378	2311	1040	33932	80067	1983
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	5011.00	5011	96	1237	78	1695	1877	28
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	2596.00	2596	0	44	6	695	1824	27
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	1215.00	1215	1	93	8	435	667	11
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	946.00	946	25	4	5	197	715	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	372.00	372	0	0	4	158	190	20
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	344.00	344	11	2	10	48	255	18
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	277.00	277	0	173	1	34	66	3
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	258.00	258	0	8	1	69	179	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	210.00	210	67	15	2	23	103	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	172.00	172	0	13	0	51	108	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	107.00	107	26	1	16	18	42	4
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	89.00	89	0	87	0	1	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	78.00	78	0	0	0	10	68	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	70.00	70	2	6	0	19	43	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	24.00	24	0	0	0	8	15	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGCT........................................................................................................................................	23	1	24.00	24	0	0	0	4	20	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	18.00	18	2	0	0	4	11	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	17.00	17	0	6	0	4	7	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	13.00	13	0	0	0	4	8	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTCC.........................................................................................................................................	22	1	12.00	12	0	0	0	1	11	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	12.00	12	0	1	0	2	9	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTTC.........................................................................................................................................	22	1	11.00	11	0	0	0	1	10	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	11.00	11	0	0	0	3	8	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	10.00	10	0	9	0	0	1	0

droAna3

T----G------------------ATTTAATTTTT-C---------------------------------------------------------------GTGAATGATTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATCT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAA-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	78640.00	78640	6020	3123	271	37295	10308	21623
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	7499.00	7499	3132	149	22	2103	203	1890
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	5193.00	5193	286	7	1	2586	260	2053
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	1768.00	1768	113	17	1	836	84	717
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	1446.00	1446	27	22	17	63	24	1293
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	1414.00	1414	5	1064	1	307	11	26
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	483.00	483	0	0	0	162	85	236
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	470.00	470	432	7	2	20	2	7
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	380.00	380	11	19	17	8	3	322
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	189.00	189	14	7	0	76	9	83
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	182.00	182	180	0	0	1	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	173.00	173	38	3	1	75	6	50
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-......................................................................................................................................	24	1	135.00	135	14	1	0	65	3	52
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	115.00	115	21	2	1	79	1	11
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	111.00	111	2	0	0	5	2	102
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	105.00	105	6	2	0	49	5	43
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	48.00	48	22	0	0	13	3	10
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	46.00	46	10	23	0	5	0	8
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	41.00	41	5	3	0	23	3	7
.................................................................................................................................AGCTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	38.00	38	2	0	0	2	1	33
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	37.00	37	0	0	0	8	3	26
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	20.00	20	2	1	0	3	1	13
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	16.00	16	1	0	0	7	3	5
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA-......................................................................................................................................	24	1	15.00	15	1	0	0	6	0	8
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	14.00	14	12	0	0	2	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	14.00	14	11	0	0	3	0	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	12.00	12	5	1	0	3	1	2
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	10.00	10	9	0	0	0	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-T.....................................................................................................................................	25	1	9.00	9	0	0	0	2	1	6
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	9.00	9	6	0	0	2	0	1
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	7.00	7	6	0	0	0	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCC...........................................................................................................................................	20	1	7.00	7	0	1	0	5	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTGT-......................................................................................................................................	24	1	7.00	7	0	0	0	1	1	5
.................................................................................................................................AGCTGGTTGACATCGGGTCAGATT................................................................................................................................................................................	24	1	6.00	6	0	1	0	0	0	5

droBip1

CATTTG------------------ATTTAATTTTT-T---------------------------------------------------------------GTGAATGATTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTACGT-TTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGTACAAG---------------------TGAAAAGTGATTTATT--CA-------------------------------------------------------AAAATATACAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T----------------------------------------------------------------------------------------------------------ATTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTACTG-TTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACGA-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T-------------------------------------------------------------------------------------------------------------ATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT-TTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAACCCGAG---------------------TGAACTGTGATAGATGG-CAAACATA----------------------------------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A---------------------------------------------------------------------------------------------------ACAAATTATTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTATTT-TTTCAAAGTATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAATACGAG---------------------TGAACTGTGATAGATGG-CAATCACAAAA-----------GACTG----CCT--------------------------ATATGCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A---------------------------------------------------------------------------------------------------ACAAATTATTATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTATTT-TTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAATACGAG---------------------TGAACTGTGATCGATGG-CAAACACA----------------------------------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T----------------------CGCGATG---TTT----------------------------------------------------------------A-AAATCATTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACAGCGGAGTACGAG---------------------TGAACTGTGATAAATGG-CAAACATA------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T----GAAATT------------CGCGATA---TTT----------------------------------------------------------------AAAAATGATTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACTCGACACTAG---------------------TGAACTGTGATAGATGG-------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T----------------------TGCGATT---TTCCA--------------------------------------------------------------GAAAATGATTATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTTTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTCGTTGACAACGAATTTCGAG---------------------TGAAACGTGATAGATGGTCAAACATA----------------------------------------------------AATTGTGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

T----------------------CACCGCA---TTC----------------------------------------------------------------GAGAATTTCCACCTGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAG---------------------TGAACTGCGATGGATTA-----------------------------------------CCATTTT-CCATGGACTAAAAGGTGAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	596198.00	596198	0	0	0	0	374	30	0	0	1	72	5	23	6	2	56	1	1	67	20	0	1	0	16	6	0	102	3	17	120	169	7415	5581	26	22	0	2	3	1	0	1	2	5	2	2	19	4	0	0	0	2	2	1	4	0	0	0	10	21	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	17	14	6	1613	47	3	27	27	1	4	3	21	71	117	2855	86	259	5079	558	1820	46	32	144	176	13941	219	14	16	75	16	37	66	151	194	60	319	8	410	159	10098	2073	81	1009	10	1770	1215	5516	91	7766	470	10015	7224	0	0	0	0	0	0	1	2	0	0	12	8	8	0	0	3	0	1	0	1	77	2	0	0	0	0	0	0	0	0	1	15	6	2	29	17	13011	15146	0	10354	25	19	9277	6227	180	7944	132	6039	26	9980	495	39	8	4	0	0	32492	37	8	39	12	1	0	0	19	1	36	17	0	0	0	0	0	15	4	21	0	3	0	0	0	0	0	0	13	34	27	165	13	687	30	121	13	117	20	233	0	0	0	0	1	0	0	0	4479	4738	4	1583	15646	359	6	3	493	4411	10870	8	2564	1	1	0	0	4	8137	0	0	0	2	0	2	0	1	0	3	0	1	1	0	0	10	61	1	13	0	9	3	7	1	4	192	0	51	30624	23409	18585	31418	79	5003	4852	1863	8	152	20	56	11	32	16906	26	12845	23156	1	2	25	18	60	2	20	18	1740	1	3	4	14	1544	4	0	2876	119298	15871	2500	7818	3800	3874	10386	1	41	3	1	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	59534.00	59534	0	0	0	0	150	4	0	0	0	3	1	3	1	0	20	0	0	30	1	0	0	0	1	30	0	4	0	0	45	50	2307	1530	6	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	9	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	4	0	559	5	0	6	3	0	1	0	1	10	11	754	6	32	1979	111	340	5	3	12	38	4513	50	5	3	27	1	11	19	34	10	10	15	3	105	15	950	334	3	136	0	186	84	239	2	1234	80	1123	1032	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2048	2245	0	1080	9	2	1716	1770	55	2503	49	851	4	964	78	0	0	7	0	0	5417	4	0	3	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	5	6	118	5	13	7	19	4	27	0	0	0	0	1	1	0	0	23	30	0	491	3523	93	2	2	16	728	4622	5	624	0	0	0	0	0	1230	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	826	455	741	1601	0	18	40	13	0	8	0	0	0	0	206	0	110	186	0	0	0	0	0	0	0	0	5	0	0	0	0	6	0	0	63	5707	435	46	136	80	62	36	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	25901.00	25901	0	0	0	0	27	0	0	0	0	0	0	0	0	0	4	1	2	11	2	0	0	0	2	1	0	2	0	1	3	4	151	135	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	148	1	0	0	0	1	0	0	0	1	1	131	0	5	259	28	53	0	1	0	7	1257	6	0	0	4	0	3	3	5	1	3	0	0	18	4	512	75	2	22	0	62	10	15	0	301	23	360	278	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	376	745	0	262	3	1	302	147	4	159	3	484	0	475	22	0	0	0	0	0	1036	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	159	1112	32	0	0	6	127	4463	2	154	0	0	0	0	0	259	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	527	166	415	777	0	0	7	1	0	4	0	0	0	0	73	0	29	56	0	0	0	0	1	0	1	0	2	0	0	0	0	2	0	0	86	8932	246	40	85	50	70	17	0	2	0	0	2
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	12111.00	12111	0	0	0	0	8	0	0	0	0	4	1	2	1	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	95	89	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	11	14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	2	2	1	6	0	0	0	2	8	9	35	2	24	109	5	18	12	5	13	7	223	1	0	0	3	4	1	0	1	14	0	13	1	5	0	72	26	0	13	1	18	15	89	3	8	0	3	9	0	0	0	0	0	0	0	0	0	0	2	3	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	167	249	0	159	1	0	193	114	3	101	1	194	0	403	14	0	0	0	0	0	591	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	6	1	16	0	2	0	4	0	7	0	0	0	0	0	0	0	0	163	175	0	9	22	1	0	0	2	37	96	0	33	0	0	0	0	0	81	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	16	0	0	0	1	1	0	0	0	13	0	10	1280	602	375	670	39	1701	176	51	2	12	0	0	0	1	273	0	240	238	0	0	0	0	6	2	0	1	85	0	0	1	0	54	0	0	48	1695	203	109	84	20	49	164	0	0	1	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	5602.00	5602	0	0	0	0	6	2	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	12	0	0	0	0	0	0	0	0	0	0	16	0	0	18	1	3	1	0	0	0	110	3	0	1	1	0	0	3	1	1	0	2	0	0	6	143	67	0	49	0	90	34	144	6	129	7	173	103	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	178	235	0	135	0	0	153	93	2	110	1	148	0	239	6	0	0	0	0	0	572	1	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	10	1	3	0	3	0	3	0	0	0	0	1	1	0	0	15	12	0	27	215	6	0	0	11	64	162	0	40	0	0	0	0	0	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	271	173	172	332	0	1	14	2	0	1	0	1	0	0	99	0	39	53	0	0	0	0	0	0	0	0	6	0	0	0	0	10	0	0	11	668	35	1	12	7	8	15	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	3243.00	3243	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	31	8	115	53	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	1	0	0	0	1	0	0	0	0	0	11	0	0	7	1	0	0	0	0	0	38	1	0	0	0	0	0	0	0	0	0	0	0	0	0	15	15	0	11	0	7	5	17	1	41	103	23	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	23	0	24	5	2	13	57	8	117	31	14	0	21	4	0	0	0	0	0	26	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	23	15	0	11	88	1	0	0	2	14	106	0	13	0	0	0	0	1	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	107	61	92	138	0	5	6	8	0	0	0	0	0	0	34	0	19	41	0	0	0	0	0	0	0	1	4	0	0	0	0	2	0	0	25	1242	94	12	29	36	30	18	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	3190.00	3190	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	2	13	1	1	1	1	0	0	19	0	0	0	0	0	0	0	0	1	0	6	0	0	2	8	15	0	7	0	1	4	21	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	4	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	15	0	11	0	0	21	10	0	7	2	14	0	36	1	0	0	0	0	0	71	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	76	101	0	5	5	0	0	0	0	10	19	0	5	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	554	84	56	74	12	638	30	18	1	1	0	0	0	0	40	0	36	39	0	0	0	0	0	1	0	0	30	0	0	0	0	13	0	0	17	544	210	103	21	3	14	77	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	2871.00	2871	0	0	0	0	5	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	1	37	0	1	18	0	1	0	0	0	0	35	3	0	0	0	0	1	0	0	0	0	0	0	5	0	34	11	0	5	0	10	8	41	1	55	4	47	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	149	109	0	104	0	0	88	14	0	16	0	34	0	51	10	0	0	0	0	0	507	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	10	16	0	4	60	4	0	0	1	15	44	0	13	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	2	0	0	147	112	95	159	0	10	16	5	0	0	0	0	0	0	141	0	32	76	0	0	0	0	0	0	0	0	8	0	0	0	0	5	0	0	6	304	29	3	11	12	3	23	0	1	0	0	0
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.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	94.00	94	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	5	0	0	0	0	0	0	1	0	0	2	1	0	1	0	1	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	6	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	2	0	6	8	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	90.00	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	0	0	1	3	0	6	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	5	7	10	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	14	2	0	1	0	0	3	0	0	0	0	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	87.00	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	0	0	2	2	0	4	0	0	0	1	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	4	6	0	0	0	0	0	1	0	0	0	0	1	0	2	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	0	0	0	0	1	1	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	81.00	81	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	3	1	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	4	6	0	1	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	27	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	64.00	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	0	1	0	0	0	4	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	5	0	0	1	0	0	3	0	1	0	1	0	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0

droSim2

T----------------------CGCCGCA---TTC----------------------------------------------------------------AAAAATCTGCACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TTTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGA-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	31865.00	31865	28455	2379	228	372	13	250	0	4	1	2	0	94	0	67	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	27221.00	27221	21624	904	1217	741	27	426	2	21	124	128	10	1993	0	4	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	6182.00	6182	4	1	0	0	139	6035	0	1	0	0	0	2	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	4084.00	4084	3799	104	178	1	0	0	0	0	0	0	0	2	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	3695.00	3695	3250	168	271	0	0	0	0	0	0	0	0	6	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	3650.00	3650	125	10	6	0	139	3369	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	1100.00	1100	230	32	0	40	24	751	0	7	0	0	0	9	0	7	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	659.00	659	258	12	161	2	0	3	0	0	0	2	0	221	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	467.00	467	106	2	136	0	2	45	1	0	0	1	0	174	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGATC................................................................................................................................................................................	24	1	144.00	144	0	0	0	0	2	142	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	128.00	128	85	2	0	8	0	0	1	12	9	2	0	9	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	98.00	98	90	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	96.00	96	25	5	11	0	0	40	0	0	0	0	0	15	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	96.00	96	53	2	2	5	2	11	0	5	7	6	0	3	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	77.00	77	15	3	0	2	0	0	0	53	1	0	0	3	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	55.00	55	5	0	1	40	0	9	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTG..........................................................................................................................................	18	1	44.00	44	42	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	43.00	43	13	1	0	23	0	6	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGG..................................................................................................................................................................................	22	1	36.00	36	14	1	20	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	32.00	32	8	0	2	0	0	22	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	29.00	29	26	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTC.....................................................................................................................................................................................	19	1	28.00	28	16	1	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCC...........................................................................................................................................	20	1	27.00	27	23	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGC............................................................................................................................................	18	1	20.00	20	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAC.................................................................................................................................................................................	23	1	18.00	18	16	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGG.........................................................................................................................................	19	1	17.00	17	15	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	15.00	15	12	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGT......................................................................................................................................................................................	18	1	13.00	13	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTAC.........................................................................................................................................	22	1	12.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGC.........................................................................................................................................	19	1	12.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	11.00	11	0	0	0	3	0	8	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCG...........................................................................................................................................	20	1	11.00	11	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGA............................................................................................................................................	19	1	10.00	10	1	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	8.00	8	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGC.........................................................................................................................................	18	1	7.00	7	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	6.00	6	1	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	6.00	6	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	6.00	6	2	0	0	2	0	0	0	1	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	6.00	6	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA.......................................................................................................................................	24	1	5.00	5	2	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGG.........................................................................................................................................	18	2	3.50	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGT..................................................................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	3.00	3	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	21	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGTT........................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.......................................................................................................................................	24	1	2.00	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGATA................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGC..................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGAC........................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGC.........................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGC............................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

C-------------------------------------------------------------------------------------------------------------ACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TTTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGA-------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	109751.00	109751	4807	16470	12266	76208
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	9396.00	9396	2794	285	167	6150
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	5839.00	5839	357	201	24	5257
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	1477.00	1477	43	126	50	1258
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	1363.00	1363	19	109	635	600
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	1020.00	1020	1	126	63	830
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	574.00	574	12	82	4	476
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	456.00	456	0	14	329	113
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	440.00	440	344	8	18	70
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	321.00	321	32	23	12	254
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	209.00	209	7	37	32	133
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	186.00	186	181	0	0	5
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	186.00	186	39	9	0	138
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	85.00	85	1	3	19	62
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.......................................................................................................................................	24	1	76.00	76	2	3	0	71
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	70.00	70	1	10	3	56
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	51.00	51	12	9	2	28
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	47.00	47	10	8	3	26
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	35.00	35	19	0	0	16
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	29.00	29	6	2	3	18
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	20.00	20	1	0	2	17
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	20.00	20	1	2	0	17
.................................................................................................................................AGCTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	16.00	16	0	4	0	12
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAT.......................................................................................................................................	24	1	14.00	14	1	0	1	12
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	13.00	13	12	0	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA.......................................................................................................................................	24	1	11.00	11	2	0	0	9
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	10.00	10	1	0	0	9
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	9.00	9	8	0	0	1
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	9.00	9	8	0	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGAT........................................................................................................................................	23	1	9.00	9	0	1	2	6
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA.......................................................................................................................................	24	1	8.00	8	0	0	0	8
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	6.00	6	6	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCA...........................................................................................................................................	20	1	6.00	6	0	0	0	6
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCC...........................................................................................................................................	20	1	5.00	5	1	0	0	4
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	5.00	5	4	0	1	0
...................................................................................................................................CTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	21	1	4.00	4	1	1	1	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTC.......................................................................................................................................	24	1	4.00	4	0	0	0	4
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	21	1	4.00	4	4	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTG..........................................................................................................................................	18	1	4.00	4	3	0	0	1
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCGT..........................................................................................................................................	21	1	3.00	3	0	0	0	3
............................................................................................................................................................................GGTCCCCTTCAACCAGCT...........................................................................................................................................	18	1	3.00	3	0	0	0	3
.................................................................................................................................AGCTGGTTGACATCGGGTCAGT..................................................................................................................................................................................	22	1	3.00	3	0	0	1	2
.................................................................................................................................AGCTGGTTGACATCGGGTCAGG..................................................................................................................................................................................	22	1	2.00	2	0	1	1	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	22	1	2.00	2	1	0	0	1
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTT..........................................................................................................................................	20	1	2.00	2	2	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTC.....................................................................................................................................................................................	19	1	2.00	2	0	0	2	0

droYak3

----------------------------------------------------------------------------------------------------------------CTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--TTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGTACGAG---------------------TAAACTGTGATAGACAG------------------------ACTGAAAGCGTAAATTACTATTTTTTCA--AACAAAAATGTGGGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	131535.00	131535	6949	7082	14777	1252	37982	52500	10993	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	12197.00	12197	3844	3892	898	51	1447	1888	177	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	6342.00	6342	1347	4	4546	2	108	304	31	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	2082.00	2082	50	303	4	1	660	974	90	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	1447.00	1447	23	72	64	5	535	686	62	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	1330.00	1330	1181	23	2	3	52	65	4	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	787.00	787	106	26	232	114	111	173	21	2	0	2	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	638.00	638	2	549	13	0	23	43	8	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	448.00	448	83	2	186	115	12	46	4	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	273.00	273	0	271	0	0	0	2	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	270.00	270	1	0	0	2	94	128	45	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	222.00	222	19	23	13	1	65	95	6	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	135.00	135	3	8	16	1	51	42	14	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	110.00	110	33	33	38	0	2	4	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	101.00	101	0	6	5	0	30	53	7	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.......................................................................................................................................	24	1	58.00	58	0	4	2	0	21	29	2	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	57.00	57	8	2	3	16	13	15	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	57.00	57	0	5	10	0	17	24	1	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	56.00	56	0	26	1	1	4	19	5	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAC.................................................................................................................................................................................	23	1	32.00	32	4	0	27	0	0	1	0	0	0	0	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	30.00	30	0	30	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	26.00	26	15	3	0	0	2	6	0	0	0	0	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	25.00	25	0	25	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	24.00	24	11	3	1	0	0	8	1	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	15.00	15	0	10	0	0	3	1	1	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTAC.........................................................................................................................................	22	1	15.00	15	2	0	12	0	0	1	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA.......................................................................................................................................	24	1	14.00	14	1	6	0	0	2	5	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGCT........................................................................................................................................	23	1	11.00	11	0	0	2	0	3	6	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	10.00	10	1	0	1	1	1	6	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	10.00	10	1	0	4	0	0	5	0	0	0	0	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	10.00	10	0	7	0	0	2	1	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTTC.........................................................................................................................................	22	2	8.50	17	0	0	7	0	2	8	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGT..................................................................................................................................................................................	22	1	8.00	8	3	1	0	0	1	3	0	0	0	0	0

droEre2

C-------------------------------------------------------------------------------------------------------------CTCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT---TCCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAATTCGAG---------------------TGAACTGTGCACTGTGA-CCTG--TG----------------------------------------------------------AA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	22	1	177371.00	177371	15650	6170	26894	1543	31232	95880	2
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	21	1	15317.00	15317	6294	478	1357	82	427	6674	5
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCT...........................................................................................................................................	20	1	4419.00	4419	488	7	400	11	258	3255	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGC.........................................................................................................................................	22	1	1870.00	1870	15	1506	99	4	27	219	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAT.................................................................................................................................................................................	23	1	1696.00	1696	27	29	92	88	155	1305	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	23	1	1509.00	1509	97	24	312	7	120	949	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAG.............................................................................................................................................	18	1	1462.00	1462	1	0	149	4	196	1112	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	21	1	1137.00	1137	991	3	27	1	8	107	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGA..................................................................................................................................................................................	22	1	603.00	603	1	15	32	76	26	453	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	23	1	597.00	597	68	6	79	2	20	417	5
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTG..........................................................................................................................................	20	1	398.00	398	392	1	1	0	0	4	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGA.........................................................................................................................................	22	1	166.00	166	8	8	26	1	22	101	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC........................................................................................................................................	23	1	165.00	165	10	3	23	0	20	109	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTT..........................................................................................................................................	21	1	159.00	159	86	7	9	3	4	50	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTGT.........................................................................................................................................	20	1	107.00	107	44	2	3	1	9	48	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAG...................................................................................................................................................................................	21	1	87.00	87	1	0	4	2	4	76	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	22	1	86.00	86	16	1	14	5	8	42	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.......................................................................................................................................	24	1	79.00	79	3	1	10	0	5	60	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGC............................................................................................................................................	19	1	39.00	39	21	15	0	0	0	3	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTGT.........................................................................................................................................	19	1	39.00	39	2	0	5	0	3	29	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCT...........................................................................................................................................	19	1	33.00	33	29	0	1	0	0	3	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAT.......................................................................................................................................	24	1	30.00	30	1	0	7	0	0	22	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTGT.........................................................................................................................................	23	1	29.00	29	18	0	0	0	0	0	11
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAA.......................................................................................................................................	24	1	26.00	26	5	0	3	0	0	18	0
.........................................................................................................................................................................TTTGGTCCCCTTCAACCAGCTG..........................................................................................................................................	22	1	25.00	25	8	0	0	0	0	1	16
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTG........................................................................................................................................	23	1	23.00	23	14	0	1	0	1	7	0
............................................................................................................................................................................GGTCCCCTTCAACCAGCTG..........................................................................................................................................	19	1	20.00	20	20	0	0	0	0	0	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAC.................................................................................................................................................................................	23	1	17.00	17	0	4	0	0	1	12	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGG.........................................................................................................................................	21	1	16.00	16	16	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTC..........................................................................................................................................	21	1	14.00	14	5	1	3	0	0	5	0
..............................................................................................................................................................................TCCCCTTCAACCAGCTGT.........................................................................................................................................	18	1	13.00	13	1	2	4	0	0	6	0
.................................................................................................................................AGCTGGTTGACATCGGGTCA....................................................................................................................................................................................	20	1	13.00	13	0	0	1	0	2	10	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTA..........................................................................................................................................	21	1	11.00	11	7	0	0	0	0	4	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAA.................................................................................................................................................................................	23	1	11.00	11	0	0	0	0	0	11	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA.......................................................................................................................................	24	1	11.00	11	0	0	2	0	0	9	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTGT.......................................................................................................................................	24	1	11.00	11	0	0	1	0	0	10	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAT.............................................................................................................................................	18	1	10.00	10	0	0	0	0	0	10	0
.................................................................................................................................AGCTGGTTGACATCGGGTCAGAG.................................................................................................................................................................................	23	1	9.00	9	0	0	1	0	0	8	0
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTT........................................................................................................................................	22	1	9.00	9	8	0	0	0	0	1	0
.............................................................................................................................................................................GTCCCCTTCAACCAGCTG..........................................................................................................................................	18	1	8.00	8	2	0	0	0	0	6	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTCT.......................................................................................................................................	24	1	8.00	8	2	0	3	0	0	3	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCC...........................................................................................................................................	20	1	7.00	7	1	3	1	0	0	2	0
........................................................................................................................................................................ATTTGGTCCCCTTCAACCAGCT...........................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	6
...........................................................................................................................................................................TGGTCCCCTTCAACCAGCTGTA........................................................................................................................................	22	1	6.00	6	6	0	0	0	0	0	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTC.......................................................................................................................................	24	1	6.00	6	1	0	0	0	1	4	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGTGT..........................................................................................................................................	21	2	5.00	10	0	0	0	0	1	9	0
..........................................................................................................................................................................TTGGTCCCCTTCAACCAGCGT..........................................................................................................................................	21	1	5.00	5	1	0	0	0	2	2	0

dmo-mir-133

scaffold_6500:24707677-24707762 +

Known

Unknown

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.2	-35.2	-35.2