ID:

dmo-mir-12

 Coordinate:

scaffold_6359:3259787-3259860 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.5 -41.9 -41.9

Flybase annnotation

intron [Dmoj\GI21762-in]; pre_miRNA [Dmoj\mir-12-RM]; utr5 [utr5_plus_15222]; miRNA [Dmoj\miR-12-RA]

No Repeatable elements found

Sense Strand Reads

AACAGCAACAACAACAACAGCAACTGCATCAGCATCAGCATCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTGCCAATTAACTAACAACCAGTACTTATGTCATACTACGCCGTGCAGTGGGCGCACTAACCGCATGCCACGCCTTAAACAAAAATATATAAAAA

*****************************************..(((((((((((((..(((((.((((.((((((((((((............)).)))))))))))))).)))))..)))))))))...)))).*************************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 M060

embryo

 V110

male body		 V041

embryo

 V056

head

 V049

head
........................................................TGAGTATTACATCAGGTACTGGT............................................................................................... 23 0 1 150171.00 150171 53249 69658 16488 7764 1863 1149
........................................................TGAGTATTACATCAGGTACTGG................................................................................................ 22 0 1 146588.00 146588 122372 19757 3767 329 255 108
........................................................TGAGTATTACATCAGGTACTG................................................................................................. 21 0 1 20626.00 20626 18783 116 1191 50 276 210
........................................................TTAGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 19067.00 19067 28 19021 17 1 0 0
........................................................TGAGTATTACATCAGGTACTGGC............................................................................................... 23 1 1 15187.00 15187 149 14982 33 10 8 5
.........................................................GAGTATTACATCAGGTACTGG................................................................................................ 21 0 1 10493.00 10493 10445 45 1 2 0 0
........................................................TTAGTATTACATCAGGTACTGG................................................................................................ 22 1 1 5318.00 5318 75 5242 1 0 0 0
........................................................TGAGTATTACATCAGGTACT.................................................................................................. 20 0 1 4756.00 4756 4332 151 200 16 36 21
.........................................................GAGTATTACATCAGGTACTGGT............................................................................................... 22 0 1 4571.00 4571 4436 110 10 11 1 3
........................................................TTAGTATTACATCAGGTACTGGC............................................................................................... 23 2 1 4348.00 4348 0 4348 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGGTC.............................................................................................. 24 1 1 4036.00 4036 699 584 2613 63 47 30
........................................................TGAGTATTACATCAGGTACTGGTT.............................................................................................. 24 1 1 3212.00 3212 1721 1020 309 107 35 20
..................................................................................................CAGTACTTATGTCATACTACGC...................................................... 22 0 1 2025.00 2025 156 1830 7 29 2 1
.........................................................GAGTATTACATCAGGTACTG................................................................................................. 20 0 1 1584.00 1584 1583 0 1 0 0 0
........................................................TGAGTATTACATCAGGTACTGGTG.............................................................................................. 24 0 1 1110.00 1110 135 947 2 25 1 0
........................................................TGAGTATTACATCAGGTACTGGTA.............................................................................................. 24 1 1 1063.00 1063 601 367 45 40 8 2
........................................................TGAGTATTACATCAGGTACTGGA............................................................................................... 23 1 1 978.00 978 735 85 132 5 13 8
........................................................TGAGTATTACATCAGGTAC................................................................................................... 19 0 1 939.00 939 471 423 22 2 13 8
........................................................TGATTATTACATCAGGTACTGGT............................................................................................... 23 1 1 803.00 803 20 762 18 2 1 0
........................................................TGAGTATTACATCAGGTACTGT................................................................................................ 22 1 1 674.00 674 461 17 169 1 15 11
........................................................TGAGTATTACAGCAGGTACTGG................................................................................................ 22 1 1 651.00 651 649 1 0 1 0 0
........................................................TGAGTATTACCTCAGGTACTGGT............................................................................................... 23 1 1 489.00 489 4 457 1 24 2 1
........................................................TGAGTATTACATCAGGGACTGGT............................................................................................... 23 1 1 483.00 483 14 411 18 32 5 3
..........................................................AGTATTACATCAGGTACTGG................................................................................................ 20 0 1 456.00 456 453 2 0 0 1 0
........................................................TGAGTATTACATCAGGTACTGC................................................................................................ 22 1 1 339.00 339 124 155 55 0 2 3
.....................................GCATCAGCGTCTGTACGGT...................................................................................................................... 19 0 1 319.00 319 28 17 257 5 8 4
........................................................TGAGTATTACATCAGGTACTGGG............................................................................................... 23 1 1 299.00 299 60 200 9 22 4 4
........................................................TGAGTATTACAGCAGGTACTGGT............................................................................................... 23 1 1 293.00 293 279 2 0 6 2 4
........................................................TTAGTATTACATCAGGTACTGGTT.............................................................................................. 24 2 1 287.00 287 1 286 0 0 0 0
........................................................TGAGTATTACAACAGGTACTGG................................................................................................ 22 1 1 280.00 280 277 2 1 0 0 0
........................................................TGATTATTACATCAGGTACTGG................................................................................................ 22 1 1 273.00 273 48 221 4 0 0 0
.......................................................CTGAGTATTACATCAGGTACTGG................................................................................................ 23 1 1 267.00 267 182 85 0 0 0 0
.........................................................GAGTATTACATCAGGTACT.................................................................................................. 19 0 1 263.00 263 262 1 0 0 0 0
........................................................TTAGTATTACATCAGGTACTGGTG.............................................................................................. 24 1 1 256.00 256 0 256 0 0 0 0
........................................................TAAGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 256.00 256 4 243 4 3 0 2
.......................................................CTGAGTATTACATCAGGTACTGGT............................................................................................... 24 1 1 255.00 255 92 150 3 7 2 1
........................................................TGCGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 232.00 232 3 227 1 1 0 0
........................................................TGAGTATTACATCAGGTACTGAC............................................................................................... 23 2 1 230.00 230 1 229 0 0 0 0
..........................................................AGTATTACATCAGGTACTGGT............................................................................................... 21 0 1 215.00 215 199 14 2 0 0 0
........................................................TGAGTATTACATAAGGTACTGGT............................................................................................... 23 1 1 215.00 215 4 199 6 4 1 1
.............................................................ATTACATCAGGTACTGGT............................................................................................... 18 0 1 211.00 211 79 91 17 10 9 5
........................................................TCAGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 201.00 201 7 189 5 0 0 0
........................................................TGAGAATTACATCAGGTACTGGT............................................................................................... 23 1 1 200.00 200 14 149 4 22 10 1
........................................................TGAGTATTACATCAGTTACTGGT............................................................................................... 23 1 1 192.00 192 22 147 13 7 2 1
........................................................TGAGTATTACATCAGGCACTGGT............................................................................................... 23 1 1 183.00 183 20 94 23 30 10 6
........................................................TGAGTATTACATCAGTTACTGG................................................................................................ 22 1 1 180.00 180 58 116 5 1 0 0
........................................................TGAGTATTACATCAGGTACTTGT............................................................................................... 23 1 1 175.00 175 12 90 15 20 6 32
........................................................TTAGTATTACCTCAGGTACTGGT............................................................................................... 23 2 1 172.00 172 0 172 0 0 0 0
........................................................TTAGTATTACATCAGGTACTGGTC.............................................................................................. 24 2 1 170.00 170 0 169 1 0 0 0
........................................................TGAGTATTACATCAGGGACTGG................................................................................................ 22 1 1 169.00 169 36 131 2 0 0 0
........................................................TGATTATTACATCAGGTACTGGC............................................................................................... 23 2 1 167.00 167 0 167 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGGTCT............................................................................................. 25 1 1 160.00 160 26 4 129 0 0 1
...........................................................GTATTACATCAGGTACTGG................................................................................................ 19 0 1 155.00 155 140 12 3 0 0 0
........................................................CGAGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 152.00 152 19 110 9 9 2 3
...............................................................................GTGCCAATTAACTAACAAC............................................................................ 19 0 1 148.00 148 11 136 0 1 0 0
........................................................TGAGTATTACACCAGGTACTGG................................................................................................ 22 1 1 148.00 148 127 21 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGA................................................................................................ 22 1 1 146.00 146 103 25 15 0 2 1
........................................................TTATTATTACATCAGGTACTGGT............................................................................................... 23 2 1 145.00 145 0 145 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGGTTT............................................................................................. 25 1 1 145.00 145 101 22 15 2 3 2
............................................................TATTACATCAGGTACTGGT............................................................................................... 19 0 1 144.00 144 94 27 20 2 1 0
............................................................TATTACATCAGGTACTGG................................................................................................ 18 0 1 142.00 142 122 18 0 0 2 0
........................................................TGAGTATTACATCAGGAACTGGT............................................................................................... 23 1 1 139.00 139 6 100 16 5 11 1
........................................................TGAGTATTACACCAGGTACTGGT............................................................................................... 23 1 1 139.00 139 53 65 7 7 6 1
.......................................................ATGAGTATTACATCAGGTACTGG................................................................................................ 23 1 1 138.00 138 138 0 0 0 0 0
........................................................TGAGCATTACATCAGGTACTGGT............................................................................................... 23 1 1 137.00 137 12 98 13 9 3 2
........................................................TGAGTATTACAACAGGTACTGGT............................................................................................... 23 1 1 131.00 131 125 4 0 2 0 0
........................................................GGAGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 130.00 130 13 115 1 1 0 0
.........................................................GAGTATTACATCAGGTACTGGTT.............................................................................................. 23 1 1 130.00 130 127 3 0 0 0 0
........................................................TGAGTATTACCTCAGGTACTGG................................................................................................ 22 1 1 125.00 125 6 119 0 0 0 0
........................................................TGAGTGTTACATCAGGTACTGGT............................................................................................... 23 1 1 122.00 122 9 89 7 9 3 5
.......................................................GTGAGTATTACATCAGGTACTGG................................................................................................ 23 1 1 122.00 122 122 0 0 0 0 0
.......................................................TTGAGTATTACATCAGGTACTGG................................................................................................ 23 0 1 122.00 122 122 0 0 0 0 0
..................................................................................................CAGTACTTATGTCATACTACGCT..................................................... 23 1 1 121.00 121 19 92 4 5 0 1
........................................................TCAGTATTACATCAGGTACTGG................................................................................................ 22 1 1 116.00 116 33 82 1 0 0 0
........................................................TTAGTATTACATCAGGTAC................................................................................................... 19 1 1 113.00 113 0 113 0 0 0 0
..................................................................................................CGGTACTTATGTCATACTACGC...................................................... 22 1 1 112.00 112 0 112 0 0 0 0
........................................................TGAGGATTACATCAGGTACTGGT............................................................................................... 23 1 1 111.00 111 8 70 11 8 14 0
........................................................TTAGTATTACATCAGGGACTGGT............................................................................................... 23 2 1 109.00 109 0 109 0 0 0 0
........................................................TTAGTATTACATCAGGTACTGGTA.............................................................................................. 24 2 1 107.00 107 1 105 1 0 0 0
........................................................TGGGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 99.00 99 34 42 14 7 1 1
........................................................TGAGTATTACAGCAGGTACTG................................................................................................. 21 1 1 96.00 96 95 0 0 0 1 0
...........................................................GTATTACATCAGGTACTGGT............................................................................................... 20 0 1 93.00 93 52 37 4 0 0 0
........................................................TGAGTATTACATCAGGGACTGGC............................................................................................... 23 2 1 92.00 92 0 90 0 1 1 0
........................................................TAAGTATTACATCAGGTACTGG................................................................................................ 22 1 1 88.00 88 10 77 1 0 0 0
..................................................................................................CAGTACTTATGTCATACTACG....................................................... 21 0 1 88.00 88 34 40 1 13 0 0
........................................................TGAGTATTACATCAGGTACTGCT............................................................................................... 23 1 1 88.00 88 2 75 7 1 3 0
........................................................TGAGAATTACATCAGGTACTGG................................................................................................ 22 1 1 87.00 87 46 39 1 0 1 0
........................................................TGAGTATTACATCATGTACTGGT............................................................................................... 23 1 1 85.00 85 25 40 12 5 2 1
........................................................TGAGTATTACATCAGGTACCGGT............................................................................................... 23 1 1 85.00 85 14 49 10 6 3 3
..........................................................AGTATTACATCAGGTACTG................................................................................................. 19 0 1 84.00 84 84 0 0 0 0 0
........................................................TGAGTATTACATCGGGTACTGGT............................................................................................... 23 1 1 82.00 82 24 39 8 8 2 1
........................................................TGAGTATTACATTAGGTACTGGT............................................................................................... 23 1 1 82.00 82 4 62 4 11 0 1
........................................................GGAGTATTACATCAGGTACTGG................................................................................................ 22 1 1 79.00 79 44 35 0 0 0 0
........................................................TGGGTATTACATCAGGTACTGG................................................................................................ 22 1 1 78.00 78 60 14 2 0 1 1
........................................................TGAGTATTACATCAGGTACTGGTAA............................................................................................. 25 2 1 78.00 78 59 13 3 1 2 0
........................................................TGAGTATTACCTCAGGTACTGGC............................................................................................... 23 2 1 78.00 78 0 77 1 0 0 0
........................................................TGAGTATTACATCAGGTA.................................................................................................... 18 0 1 78.00 78 45 0 27 1 5 0
........................................................TGAGTATTGCATCAGGTACTGGT............................................................................................... 23 1 1 77.00 77 18 32 9 12 2 4
....................................AGCATCAGCGTCTGTACGGT...................................................................................................................... 20 0 1 76.00 76 3 6 64 3 0 0
........................................................AGAGTATTACATCAGGTACTGGT............................................................................................... 23 1 1 75.00 75 9 61 3 1 1 0
........................................................CTAGTATTACATCAGGTACTGGT............................................................................................... 23 2 1 74.00 74 0 74 0 0 0 0
........................................................GTAGTATTACATCAGGTACTGGT............................................................................................... 23 2 1 74.00 74 0 74 0 0 0 0
........................................................TGAGTATTACATAAGGTACTGG................................................................................................ 22 1 1 73.00 73 3 67 3 0 0 0
........................................................TGAGTATTACGTCAGGTACTGGT............................................................................................... 23 1 1 72.00 72 24 21 11 12 3 1
........................................................TTAGTATTACATCAGGTACTGGG............................................................................................... 23 2 1 72.00 72 0 72 0 0 0 0
........................................................TGAGCATTACATCAGGTACTGG................................................................................................ 22 1 1 71.00 71 41 25 3 0 2 0
........................................................TAAGTATTACATCAGGTACTGGC............................................................................................... 23 2 1 70.00 70 0 70 0 0 0 0
........................................................TGAGTATTACATCAGGTGCTGGT............................................................................................... 23 1 1 70.00 70 19 25 4 16 1 5
........................................................TGAGTATTACATCATGTACTGG................................................................................................ 22 1 1 70.00 70 56 9 3 1 0 1
........................................................CGAGTATTACATCAGGTACTGG................................................................................................ 22 1 1 70.00 70 38 30 2 0 0 0
........................................................TGAGTATTACATCAGGTACTGTT............................................................................................... 23 1 1 69.00 69 19 25 5 6 11 3
........................................................TGAGTATTATATCAGGTACTGGT............................................................................................... 23 1 1 69.00 69 4 40 11 12 2 0
........................................................TGAGTATTACATCAGGAACTGG................................................................................................ 22 1 1 69.00 69 45 21 2 0 0 1
........................................................TGAGTAGTACATCAGGTACTGGT............................................................................................... 23 1 1 68.00 68 1 56 3 4 2 2
........................................................TTAGTATTACATAAGGTACTGGT............................................................................................... 23 2 1 65.00 65 0 65 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGAT............................................................................................... 23 1 1 63.00 63 5 46 4 7 0 1
........................................................TGAGGATTACATCAGGTACTGG................................................................................................ 22 1 1 62.00 62 40 18 2 1 1 0
..................................................................................................CACTACTTATGTCATACTACGC...................................................... 22 1 1 62.00 62 0 62 0 0 0 0
........................................................TGCGTATTACATCAGGTACTGG................................................................................................ 22 1 1 61.00 61 3 58 0 0 0 0
........................................................TGAGTACTACATCAGGTACTGGT............................................................................................... 23 1 1 61.00 61 10 36 7 7 1 0
........................................................TGAGTATTACGTCAGGTACTGG................................................................................................ 22 1 1 59.00 59 45 6 6 0 1 1
........................................................TGAGTATTACATCAGGCACTGG................................................................................................ 22 1 1 58.00 58 29 22 5 1 0 1
........................................................TGAGTATTACATCAGGTATTGGT............................................................................................... 23 1 1 58.00 58 2 41 11 4 0 0
........................................................TGAGTATTACATCAGCTACTGGT............................................................................................... 23 1 1 58.00 58 11 38 3 4 1 1
.........................................................GAGTATTACATCAGGTACTGGTC.............................................................................................. 23 1 1 56.00 56 56 0 0 0 0 0
.........................................................GAGTATTACATGAGGTACTGG................................................................................................ 21 1 1 56.00 56 56 0 0 0 0 0
........................................................TTAGTATTACATCAGGTACTGAC............................................................................................... 23 3 1 55.00 55 0 55 0 0 0 0
.........................................................GAGTATTACATCAGGTACTGGTA.............................................................................................. 23 1 1 55.00 55 55 0 0 0 0 0
........................................................TGCGTATTACATCAGGTACTGGC............................................................................................... 23 2 1 54.00 54 0 54 0 0 0 0
.......................................................TTGAGTATTACATCAGGTACTGGT............................................................................................... 24 0 1 54.00 54 53 1 0 0 0 0
........................................................AGAGTATTACATCAGGTACTGG................................................................................................ 22 1 1 53.00 53 27 25 1 0 0 0
........................................................TGAGTATTACATCAGGTACTTG................................................................................................ 22 1 1 53.00 53 20 24 2 1 1 5
........................................................TGAGTTTTACATCAGGTACTGGT............................................................................................... 23 1 1 52.00 52 2 45 3 2 0 0
........................................................TGAGTATTACATCAGGTACCGG................................................................................................ 22 1 1 52.00 52 27 20 2 1 1 1
.........................................................GAGTATTACATCAGGTACTGGA............................................................................................... 22 1 1 51.00 51 50 1 0 0 0 0
........................................................TGAGTATTACATCCGGTACTGGT............................................................................................... 23 1 1 51.00 51 1 5 1 33 1 10
........................................................TGAGTATTACATCGGGTACTGG................................................................................................ 22 1 1 51.00 51 30 17 4 0 0 0
........................................................TTAGTATTACATCAGTTACTGGT............................................................................................... 23 2 1 50.00 50 0 50 0 0 0 0
...............................................................................GGGCCAATTAACTAACAAC............................................................................ 19 1 1 50.00 50 0 50 0 0 0 0
........................................................TCAGTATTACATCAGGTACTGGC............................................................................................... 23 2 1 49.00 49 0 48 0 1 0 0
........................................................TGACTATTACATCAGGTACTGGT............................................................................................... 23 1 1 49.00 49 12 30 5 1 1 0
........................................................TGAGTATCACATCAGGTACTGGT............................................................................................... 23 1 1 49.00 49 2 38 3 4 1 1
........................................................TTAGTATTACCTCAGGTACTGG................................................................................................ 22 2 1 49.00 49 0 49 0 0 0 0
.......................................................ATGAGTATTACATCAGGTACTGGT............................................................................................... 24 1 1 48.00 48 47 1 0 0 0 0
........................................................TGAGTATTACATCAGCTACTGG................................................................................................ 22 1 1 48.00 48 20 24 2 1 1 0
........................................................TGAGTATTACATAAGGTACTGGC............................................................................................... 23 2 1 47.00 47 0 47 0 0 0 0
........................................................TGAGTGTTACATCAGGTACTGG................................................................................................ 22 1 1 47.00 47 17 28 0 1 1 0
........................................................ATAGTATTACATCAGGTACTGGT............................................................................................... 23 2 1 47.00 47 0 47 0 0 0 0
........................................................TGAGTATTACAACAGGTACTG................................................................................................. 21 1 1 45.00 45 43 0 0 1 0 1
..................................................................................................CAGTACTTATGTCATACTACGCC..................................................... 23 0 1 44.00 44 1 43 0 0 0 0
........................................................TGAGTATTACATCAGGTACTAGT............................................................................................... 23 1 1 43.00 43 4 25 4 7 1 2
........................................................TGAGTATTACATCAGGTACTGGTGT............................................................................................. 25 0 1 43.00 43 6 21 10 5 0 1
........................................................TTAGTATTACATCAGGTACTGC................................................................................................ 22 2 1 43.00 43 0 43 0 0 0 0
........................................................TGAGTATTACATCAGGTACC.................................................................................................. 20 1 1 42.00 42 2 40 0 0 0 0
.........................................................GAGTATTACATCAGGTACTGGC............................................................................................... 22 1 1 42.00 42 9 33 0 0 0 0
........................................................TGAGAATTACATCAGGTACTGGC............................................................................................... 23 2 1 42.00 42 1 40 0 1 0 0
........................................................TTAGTATTACATCAGGGACTGG................................................................................................ 22 2 1 41.00 41 0 41 0 0 0 0
........................................................TGAGTATTGCATCAGGTACTGG................................................................................................ 22 1 1 41.00 41 28 8 4 0 0 1
........................................................TGAGTATTACATCAGATACTGGT............................................................................................... 23 1 1 41.00 41 9 18 7 2 2 3
........................................................TGAGTATTACATCAGGTACTGGTTC............................................................................................. 25 2 1 40.00 40 14 4 20 0 2 0
........................................................TTCGTATTACATCAGGTACTGGT............................................................................................... 23 2 1 40.00 40 0 40 0 0 0 0
........................................................TTAGTATTACATCAGGTACT.................................................................................................. 20 1 1 39.00 39 0 39 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGGAA.............................................................................................. 24 2 1 39.00 39 26 3 9 0 1 0
.........................................................GAGTATTACATCAGGTAC................................................................................................... 18 0 1 38.00 38 38 0 0 0 0 0
...................................................................................................AGTACTTATGTCATACTACGC...................................................... 21 0 1 38.00 38 18 18 0 2 0 0
........................................................TGAGTATTACATCAGGTACTT................................................................................................. 21 1 1 38.00 38 27 9 0 0 0 2
........................................................TGAGTATTACATCAGGTGCTGG................................................................................................ 22 1 1 37.00 37 26 9 0 0 2 0
........................................................TGAGTATTACATCTGGTACTGGT............................................................................................... 23 1 1 37.00 37 3 17 0 13 3 1
........................................................TGAGTATTACATCACGTACTGG................................................................................................ 22 1 1 36.00 36 24 10 2 0 0 0
...................................CAGCATCAGCGTCTGTACGGT...................................................................................................................... 21 0 1 36.00 36 8 2 23 1 1 1
........................................................TGAGTATTACATCACGTACTGGT............................................................................................... 23 1 1 35.00 35 8 20 4 1 2 0
.........................................................GAGTATTACATCAGGTACTGT................................................................................................ 21 1 1 35.00 35 35 0 0 0 0 0
........................................................TGAGTATTACATCAGGTTCTGGT............................................................................................... 23 1 1 35.00 35 3 23 5 2 1 1
........................................................TTAGTATTACATCAGGTACTG................................................................................................. 21 1 1 35.00 35 14 21 0 0 0 0
........................................................TTAGAATTACATCAGGTACTGGT............................................................................................... 23 2 1 34.00 34 0 34 0 0 0 0
........................................................TGAGTATTACATCAAGTACTGGT............................................................................................... 23 1 1 34.00 34 7 18 4 5 0 0
........................................................TGAGTATTACATCAGGTACGGGT............................................................................................... 23 1 1 34.00 34 4 23 2 3 1 1
........................................................TGAGTATTACATCAGTTACTGGC............................................................................................... 23 2 1 34.00 34 0 34 0 0 0 0
........................................................TGAGTATTACATCAGGTAATGGT............................................................................................... 23 1 1 33.00 33 3 3 4 18 3 2
........................................................TGAGTATTACATCAGGTACTGGTCA............................................................................................. 25 2 1 33.00 33 8 0 25 0 0 0
.......................................................GTGAGTATTACATCAGGTACTGGT............................................................................................... 24 1 1 33.00 33 33 0 0 0 0 0
........................................................TGAGCATTACATCAGGTACTGGC............................................................................................... 23 2 1 33.00 33 0 33 0 0 0 0
........................................................TGAGTATTACCTCAGGGACTGGT............................................................................................... 23 2 1 32.00 32 0 32 0 0 0 0
........................................................GTAGTATTACATCAGGTACTGG................................................................................................ 22 2 1 31.00 31 1 30 0 0 0 0
........................................................TTAGTATTACATCAGGAACTGGT............................................................................................... 23 2 1 31.00 31 0 31 0 0 0 0
........................................................TGAGTATTACATCAGGTCCTGGT............................................................................................... 23 1 1 31.00 31 0 7 2 19 0 3
.......................................................CTGAGTATTACATCAGGTACTGGC............................................................................................... 24 2 1 31.00 31 1 30 0 0 0 0
........................................................TGAGTATTATATCAGGTACTGG................................................................................................ 22 1 1 31.00 31 15 14 0 0 2 0
..................................................................................................CAGTACTTATGTCATACTAC........................................................ 20 0 1 31.00 31 1 28 0 2 0 0
........................................................TGAGTATCACATCAGGTACTGG................................................................................................ 22 1 1 30.00 30 16 13 0 0 1 0
........................................................TGAGTATTACCTCAGGTACTTGT............................................................................................... 23 2 1 30.00 30 0 27 0 3 0 0
........................................................TGAGTATTACATCAGGTACTC................................................................................................. 21 1 1 30.00 30 28 1 0 0 1 0
..................................................................................................CAGCACTTATGTCATACTACGC...................................................... 22 1 1 29.00 29 0 29 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGGTAT............................................................................................. 25 1 1 29.00 29 24 3 2 0 0 0
........................................................TGAGTATTACATCAGATACTGG................................................................................................ 22 1 1 29.00 29 19 9 1 0 0 0
........................................................TGAGTATTACATCAGGTACTCGT............................................................................................... 23 1 1 28.00 28 7 5 3 9 1 3
........................................................TTAGTATTACATCAGGCACTGGT............................................................................................... 23 2 1 28.00 28 0 28 0 0 0 0
........................................................TGAGTATTACATTAGGTACTGG................................................................................................ 22 1 1 28.00 28 14 12 1 0 1 0
.........................................................GAGTATTACATCAGGTACTGGTG.............................................................................................. 23 0 1 28.00 28 19 9 0 0 0 0
........................................................TGACTATTACATCAGGTACTGG................................................................................................ 22 1 1 28.00 28 24 3 1 0 0 0
........................................................TGAGTATTACATCAGGTAGTGGT............................................................................................... 23 1 1 27.00 27 5 8 6 7 0 1
........................................................TGAGTATTACATCAGGTACTAG................................................................................................ 22 1 1 27.00 27 10 12 2 1 0 2
.........................................................TAGTATTACATCAGGTACTGGT............................................................................................... 22 1 1 27.00 27 6 17 4 0 0 0
.........................................................GAGTATTACATGAGGTACTGGT............................................................................................... 22 1 1 27.00 27 27 0 0 0 0 0
.............................................................ATTACATCAGGTACTGGC............................................................................................... 18 1 1 27.00 27 0 27 0 0 0 0
........................................................TTATTATTACATCAGGTACTGG................................................................................................ 22 2 2 26.50 53 1 52 0 0 0 0
........................................................TGAGTAGTACATCAGGTACTGG................................................................................................ 22 1 1 26.00 26 0 25 0 0 0 1
........................................................TGAGTACTACATCAGGTACTGG................................................................................................ 22 1 1 26.00 26 20 6 0 0 0 0
........................................................TGAGTATTACATCAGGTACTTT................................................................................................ 22 2 1 26.00 26 26 0 0 0 0 0
........................................................TGAGTATTACATCAGGTATTGG................................................................................................ 22 1 1 26.00 26 11 12 2 0 1 0
..................................................................................................CTGTACTTATGTCATACTACGC...................................................... 22 1 1 26.00 26 0 26 0 0 0 0
.......................................................CTGAGTATTACATCAGGTACTG................................................................................................. 22 1 1 25.00 25 25 0 0 0 0 0
..................................................................................................CAGGACTTATGTCATACTACGC...................................................... 22 1 1 24.00 24 0 24 0 0 0 0
........................................................TTAGCATTACATCAGGTACTGGT............................................................................................... 23 2 1 24.00 24 0 24 0 0 0 0
........................................................TGAGTATTACATCAAGTACTGG................................................................................................ 22 1 1 23.00 23 21 1 0 1 0 0
........................................................TGAATATTACATCAGGTACTGGT............................................................................................... 23 1 1 23.00 23 3 12 4 4 0 0
........................................................TTAGTATTACATCAGGTACTGCT............................................................................................... 23 2 1 23.00 23 0 23 0 0 0 0
........................................................TGAGTATTACATCAGGGACTGGG............................................................................................... 23 2 1 23.00 23 0 22 0 1 0 0
........................................................TTAGTATTACATCAGGTACTGGA............................................................................................... 23 2 1 23.00 23 0 23 0 0 0 0
........................................................TTAGTATTACATCAGGTACTTGT............................................................................................... 23 2 1 22.00 22 0 22 0 0 0 0
........................................................GGAGTATTACATCAGGTACTGGC............................................................................................... 23 2 1 22.00 22 0 22 0 0 0 0
.......................................................CGGAGTATTACATCAGGTACTGGT............................................................................................... 24 2 1 22.00 22 0 22 0 0 0 0
...........................................................GTATTACATCAGGTACTG................................................................................................. 18 0 1 21.00 21 21 0 0 0 0 0
........................................................TGAGGATTACATCAGGTACTGGC............................................................................................... 23 2 1 21.00 21 0 20 0 0 1 0
........................................................TGAGTATTACATCAGGTACTGGTAAA............................................................................................ 26 3 1 21.00 21 15 3 0 2 1 0
........................................................TGAGTAGTACATCAGGTACTGGG............................................................................................... 23 2 1 21.00 21 0 21 0 0 0 0
........................................................TTAGTATTACCTCAGGTACTGGC............................................................................................... 23 3 2 20.00 40 0 40 0 0 0 0
.........................................................GAGTATTACATAAGGTACTGG................................................................................................ 21 1 1 20.00 20 20 0 0 0 0 0
........................................................TGAGTATTACATCAGTTACTG................................................................................................. 21 1 1 20.00 20 13 0 6 0 0 1
........................................................TGAGTATTCCATCAGGTACTGGT............................................................................................... 23 1 1 20.00 20 1 13 0 5 0 1
........................................................TGAGTATTAAATCAGGTACTGGT............................................................................................... 23 1 1 20.00 20 4 7 6 3 0 0
........................................................TGAGTGTTACATCAGGTACTGGC............................................................................................... 23 2 1 20.00 20 0 20 0 0 0 0
........................................................TGAGTATTACATCAGGCACTGGC............................................................................................... 23 2 1 20.00 20 0 17 1 1 0 1
........................................................TGAGTATTACATCAGGTACAGGT............................................................................................... 23 1 1 20.00 20 1 16 2 0 1 0
........................................................TTAGTATTACATTAGGTACTGGT............................................................................................... 23 2 1 20.00 20 0 20 0 0 0 0
........................................................CGAGTATTACATCAGGTACTGGC............................................................................................... 23 2 1 20.00 20 1 19 0 0 0 0
........................................................TTAGTATTACATCGGGTACTGGT............................................................................................... 23 2 1 19.00 19 0 19 0 0 0 0
........................................................TGAGTTTTACATCAGGTACTGG................................................................................................ 22 1 1 19.00 19 9 10 0 0 0 0
........................................................TGAGTATTACAGCAGGTACT.................................................................................................. 20 1 1 19.00 19 17 0 0 0 1 1
........................................................TGAGTATAACATCAGGTACTGGT............................................................................................... 23 1 1 19.00 19 0 18 1 0 0 0
........................................................TGAGTATTACACCAGGTACTG................................................................................................. 21 1 1 19.00 19 18 0 0 0 1 0
........................................................GTAGTATTACATCAGGTACTGGC............................................................................................... 23 3 1 19.00 19 0 19 0 0 0 0
..................................TCAGCATCAGCGTCTGTACGGT...................................................................................................................... 22 0 1 19.00 19 2 2 11 1 1 2
........................................................TGATTATTACATCAGGTACTGGTT.............................................................................................. 24 2 1 19.00 19 0 18 1 0 0 0
........................................................ATAGTATTACATCAGGTACTGG................................................................................................ 22 2 1 19.00 19 0 19 0 0 0 0
........................................................TTAGTATTACATCAGTTACTGG................................................................................................ 22 2 2 18.50 37 0 37 0 0 0 0
........................................................TGAATATTACATCAGGTACTGG................................................................................................ 22 1 1 18.00 18 12 4 1 0 0 1
........................................................TTAGTATTACACCAGGTACTGGT............................................................................................... 23 2 1 18.00 18 0 18 0 0 0 0
......................................CATCAGCGTCTGTACGGT...................................................................................................................... 18 0 1 18.00 18 1 6 2 8 1 0
........................................................TTAGGATTACATCAGGTACTGGT............................................................................................... 23 2 1 17.00 17 0 17 0 0 0 0
........................................................TGAGTATTACGTCAGGTACTG................................................................................................. 21 1 1 17.00 17 15 0 1 0 1 0
........................................................CTAGTATTACATCAGGTACTGG................................................................................................ 22 2 1 17.00 17 0 17 0 0 0 0
.......................................................ATGAGTATTACATCAGGTACTG................................................................................................. 22 1 1 17.00 17 17 0 0 0 0 0
..........................................................TGAGTTACATCAGGTACTGGT............................................................................................... 21 3 1 16.00 16 0 4 11 0 0 1
........................................................TTAGTATTACATCAGGTACCGGT............................................................................................... 23 2 1 16.00 16 0 16 0 0 0 0
........................................................TGAGTATTACCTCAGGGACTTGT............................................................................................... 23 3 1 16.00 16 0 16 0 0 0 0
........................................................TTAGTATTACATCAGGTATTGGT............................................................................................... 23 2 1 16.00 16 0 16 0 0 0 0
........................................................TTAGTAGTACATCAGGTACTGGT............................................................................................... 23 2 1 15.00 15 0 15 0 0 0 0
........................................................TGAGTATTACATCAGGTACTTGC............................................................................................... 23 2 1 15.00 15 0 15 0 0 0 0
........................................................TGAGTATTACATCAGGAACTGGC............................................................................................... 23 2 1 15.00 15 0 14 0 1 0 0
........................................................TTAGTATTACATCAGGGACTGGC............................................................................................... 23 3 1 15.00 15 0 15 0 0 0 0
........................................................TGAGTATTACAGCAGGTACTGGTT.............................................................................................. 24 2 1 15.00 15 14 0 0 1 0 0
.............................................................ATTACATCAGGTACTGGTT.............................................................................................. 19 1 1 15.00 15 10 1 3 0 0 1
........................................................TTCGTATTACATCAGGTACTGG................................................................................................ 22 2 1 15.00 15 0 14 0 0 1 0
........................................................TTAGTGTTACATCAGGTACTGGT............................................................................................... 23 2 1 15.00 15 0 15 0 0 0 0
........................................................TGAGTATTACATCAGGTTCTGG................................................................................................ 22 1 1 14.00 14 2 10 0 1 1 0
.......................................................GTGAGTATTACATCAGGTACTG................................................................................................. 22 1 1 14.00 14 14 0 0 0 0 0
........................................................TGAGTATTATATCAGGTACTGGC............................................................................................... 23 2 1 14.00 14 0 14 0 0 0 0
........................................................TTAGTATTACATAAGGTACTGG................................................................................................ 22 2 1 14.00 14 0 14 0 0 0 0
.........................................................TAGTATTACATCAGGTACTGG................................................................................................ 21 1 1 14.00 14 11 3 0 0 0 0
........................................................TTAGTATTACATCATGTACTGGT............................................................................................... 23 2 1 13.00 13 0 13 0 0 0 0
........................................................TTAGTATTACATAAGGTACTGGC............................................................................................... 23 3 1 13.00 13 0 13 0 0 0 0
........................................................TGAGTATTACCTAAGGTACTGGT............................................................................................... 23 2 1 13.00 13 0 12 0 1 0 0
........................................................TGAGTATTACATCAGGTACTGGAT.............................................................................................. 24 2 1 13.00 13 8 1 4 0 0 0
.........................................................GAGTATTACATAAGGTACTGGT............................................................................................... 22 1 1 13.00 13 13 0 0 0 0 0
........................................................TGAGTATTACATCAGGTATTGGC............................................................................................... 23 2 1 13.00 13 0 13 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGGTGA............................................................................................. 25 1 1 13.00 13 12 0 1 0 0 0
........................................................TGATTATTACATCAGGTACTGGTG.............................................................................................. 24 1 1 13.00 13 0 13 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGTC............................................................................................... 23 2 1 13.00 13 4 4 5 0 0 0
........................................................TGAGTATTACATCATGTACTG................................................................................................. 21 1 1 13.00 13 11 0 0 1 0 1
........................................................TTAGTATTGCATCAGGTACTGGT............................................................................................... 23 2 1 13.00 13 0 13 0 0 0 0
........................................................TTAGTATAACATCAGGTACTGGT............................................................................................... 23 2 1 12.00 12 0 12 0 0 0 0
.......................................................CTGAGTATTACATCAGGTACTGGTG.............................................................................................. 25 1 1 12.00 12 0 12 0 0 0 0
........................................................TGAGTATTACACCAGGTACTGGC............................................................................................... 23 2 1 12.00 12 1 11 0 0 0 0
........................................................TGAGTATTACATCAGGTACTGGTTA............................................................................................. 25 2 1 12.00 12 6 0 6 0 0 0
........................................................ATAGTATTACATCAGGTACTGGC............................................................................................... 23 3 1 12.00 12 0 12 0 0 0 0
........................................................TTAGTATTACATCAGGTACTAGT............................................................................................... 23 2 1 12.00 12 0 12 0 0 0 0
........................................................TTGGTATTACATCAGGTACTGGT............................................................................................... 23 2 1 12.00 12 0 12 0 0 0 0
.......................................................CGGAGTATTACATCAGGTACTGG................................................................................................ 23 2 1 12.00 12 0 12 0 0 0 0
......................................................TCTGAGTATTACATCAGGTACTGGT............................................................................................... 25 2 1 12.00 12 0 12 0 0 0 0
........................................................TTAGTATTACATCAGGTTCTGGT............................................................................................... 23 2 1 12.00 12 0 12 0 0 0 0
........................................................TGAGTATTACATAAGGTACTTGT............................................................................................... 23 2 1 12.00 12 0 12 0 0 0 0
........................................................TTAGTATTATATCAGGTACTGGT............................................................................................... 23 2 1 12.00 12 0 12 0 0 0 0
........................................................TGAGTATTACATCAGGGACTGGTT.............................................................................................. 24 2 1 12.00 12 2 9 0 1 0 0
........................................................AGAGTATTACATCAGGTACTGGC............................................................................................... 23 2 1 11.00 11 0 11 0 0 0 0
........................................................TGAGTATTACAACAGGTACT.................................................................................................. 20 1 1 11.00 11 11 0 0 0 0 0
........................................................TGGGTATTACATCAGGTACTG................................................................................................. 21 1 1 11.00 11 9 0 1 0 0 1
........................................................TGAGTATTACCTCAGGTACTGGTT.............................................................................................. 24 2 1 11.00 11 0 11 0 0 0 0
.........................................................GAGTATTACATCAGGTACTGC................................................................................................ 21 1 1 11.00 11 11 0 0 0 0 0
........................................................TGAGTATTACATCCGGTACTGG................................................................................................ 22 1 1 11.00 11 5 2 2 2 0 0
........................................................TTAGTATTACATCAGGTACTGTT............................................................................................... 23 2 1 11.00 11 0 11 0 0 0 0

Anti-sense strand reads

TTGTCGTTGTTGTTGTTGTCGTTGACGTAGTCGTAGTCGTAGTCGCAGACATGCCAACTCATAATGTAGTCCATGACCACACGGTTAATTGATTGTTGGTCATGAATACAGTATGATGCGGCACGTCACCCGCGTGATTGGCGTACGGTGCGGAATTTGTTTTTATATATTTTT

***************************************..(((((((((((((..(((((.((((.((((((((((((............)).)))))))))))))).)))))..)))))))))...)))).***************************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 M046

female body
................................................................................................TGGTCATGACTACATTATGATT........................................................ 22 3 2 11.50 23 23 0
.................................................................................................GGTCATGACTACATTATGATT........................................................ 21 3 4 4.25 17 17 0
.................................................................................................GGTCATGACTACATTATG........................................................... 18 2 1 1.00 1 0 1
...............................................................................................TTGGTCATGACTACATTATGATT........................................................ 23 3 1 1.00 1 1 0
.................................................................................................GGTCATGACTACATTATGA.......................................................... 19 2 1 1.00 1 0 1
.................................................................................................GGTCATGACTACATTATGAGGC....................................................... 22 3 1 1.00 1 1 0
................................................................................................TGGTCATGACTACATTATGAG......................................................... 21 3 1 1.00 1 0 1
.................................................................................................GGTCATGACTACATTATGAG......................................................... 20 3 5 0.40 2 0 2
................................................................................................TGGTCAGGACTACATTATGA.......................................................... 20 3 4 0.25 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6359:3259737-3259910 + dmo-mir-12 Known_mirbase A-ACAGC-----------------AACAAC--A---ACAACAGCA-ACTGCATCAGCAT-------------CAGCATCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCAATTAACTAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CAGTGGGCGCA-CTAACCGCATGCCACGC----C-TTAAACAAAAATATATAAA-AA--
droVir3 scaffold_12970:2049284-2049445 + dvi-mir-12 Known_mirbase A-GCAGC-----------------CGCATC--A---ACAGCCGCA-------TCAGCAT-------------CCGCATCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCATTTAACTAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CAGTGGGCGCA-CTAACCGCATGCCACGC----C-TTT--CAAAAATGTT-----T--A
droGri2 scaffold_14853:6951690-6951848 - dgr-mir-12 Known_mirbase A-ATCGC-----------------AGCATC--A---GCATCAGCA-------TCAGCATCCGAAGCAGC-ATC---ACAAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCATTTAACCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CAGTGGGCGCA-CTAACCGCATGCCACGC----C-TAC---------------------
droWil2 scf2_1100000004515:1592727-1592839 - dwi-mir-12 Known_mirbase ------------------------------------------------------------------------------CAGCGCCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTTAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACTGCATGTCCACA----C-C-----------------------
dp5 XL_group1a:977955-978133 + dps-mir-12 Known_mirbase A-GCCGCCAACTCCGCTAACCATTCGCG--ACG--------------------CGT---TTC----CAGG--ATCCAGCAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTG------------CTTTAAATCCAACAACCAGTACTTATGTTAT--ACTACGCCGTG-CACTGATCGCA-CTAACCGCATGCCAAGA----C-CAAGCCAAAGCCAAAGACA-AA--
droPer2 scaffold_26:1092639-1092776 + dpe-mir-12 Known_mirbase C---------------------------------------------------------------------------AGCAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTG------------CTTTAAATCCAACAACCAGTACTTATGTTAT--ACTACGCCGTG-CACTGATCGCA-CTAACCGCATGCCAAGA----C-CAAGCCAAAGCCAAAGCCA-AAGA
droAna3 scaffold_12929:2898547-2898692 - dan-mir-12 Known_mirbase T-ATCCT-----------------GGAA--ACACACTC--GACAAC--------------------------------TGGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTG------------CCTTTAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCTCCA-------------AAAAA------AAAAAC
droBip1 scf7180000396740:80325-80456 - --------------------------------------------------------------------------------GCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCAACCAGATACCTC--AA--AATATATCCA-AA--
droKik1 scf7180000302696:761565-761677 + T-----------------------------------------------------------------------------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCATAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATGCCAAAG----C-------------------------
droFic1 scf7180000454038:647526-647667 + G-GACCC---------------------------AATC--GAAAGA--------------------------AGAGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTAAAATCGAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCAACCAGAACCC-------------------G--A
droEle1 scf7180000491023:1178522-1178677 - G-GATCC---------------CTCGCG--ACG---TGAGAAGGAA-------CAGCCC-------------AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCCTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCAAAAT----A-C-----------------AAAATA
droRho1 scf7180000777097:73403-73526 - A-GCC-----------------------------------------------------C-------------AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAACTTAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCAAAA----A-C-----------------------
droBia1 scf7180000302041:37852-37995 + CAGCAGC-----------------AGCACCAC---CTGAGGACG--------ACAGCCC-------------CAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCC----------------------------------
droTak1 scf7180000414432:174017-174170 + A-GCCGG-----------------AGTAAC--A---GAGCCAGCC-AACGCGA--GG---------AACC--AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCACCA--------------------------AA--
droEug1 scf7180000409533:552745-552856 + --------------------------------------------------------------------------GGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTTAAATAAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCA---------------------------------
dm3 chrX:15403460-15403601 + dme-mir-12 Known_mirbase T-GCCGC--------------------G--ACGCACTG--AAGGAT-------CGT---CTG----TACG--AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------
droSim2 x:14568745-14568889 + dsi-mir-12 Known_mirbase C-ATTGC-----------------CGCG--ACGCACTG--AAGGAT-------CGT---CTG----TACG--ATGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTGAAATCCAACAACCAGTACTTGTGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------
droSec2 scaffold_73:137880-138024 + dse-mir-12 Known_mirbase C-ATTGC-----------------CGCG--ACGCACTG--AAGGAT-------CGT---CTG----TACG--ATGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTGAAATCCAACAACCAGTACTTGTGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------
droYak3 3L:2230488-2230644 - A-ACAGC-----------------AGCA--ACA---CCAACAGCAG-------CAACACAAG---CAGC-TCCAGCAGCAGCAGCAGCA-------GCAA------------TGGAGCGGCAACAACGGGAGCAACAACCAAAGGAGCAACAACTATGCCAACAACTACGCGGCGGCAGCAGCCGCCTCCATGTACATGCAACAC----TTC-------------------A--A
droEre2 scaffold_4690:11630931-11631040 - der-mir-12 Known_mirbase A-------------------------------------------------------------------------GGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAAACCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
A-ACAGC-----------------AACAAC--A---ACAACAGCA-ACTGCATCAGCAT-------------CAGCATCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCAATTAACTAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CAGTGGGCGCA-CTAACCGCATGCCACGC----C-TTAAACAAAAATATATAAA-AA--SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................231150171.00150171532497764114918636965816488
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................221146588.00146588122372329108255197573767
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................21120626.002062618783502102761161191
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................23115187.001518714910581498233
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................21110493.001049310445200451
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................2014756.0047564332162136151200
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2214571.0045714436113111010
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................2414036.0040366996330475842613
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................2413212.003212172110720351020309
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGC................................................................2212025.002025156291218307
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................2011584.001584158300001
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................2411110.00111013525019472
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................2411063.001063601402836745
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................231978.00978735581385132
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................191939.00939471281342322
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................221674.006744611111517169
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................201456.0045645300120
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................221339.0033912403215555
..........................................................................GCATCAGCGTCTGTACGGT..............................................................................................................................................191319.003192854817257
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................231299.002996022442009
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191263.0026326200010
.............................................................................................TGAGTATTACATCAGGTACTGAC.......................................................................................................................231230.0023010002290
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................211215.00215199000142
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................181211.002117910599117
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................191155.00155140000123
....................................................................................................................GTG------------CCAATTAACTAACAAC........................................................................................191148.00148111001360
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................221146.001461030122515
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................191144.00144942012720
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................181142.00142122002180
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................231130.0013012700030
............................................................................................TTGAGTATTACATCAGGTACTGG........................................................................................................................231122.0012212200000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCT...............................................................231121.0012119510924
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................20193.009352000374
...................................................................................................................................................CAGTACTTATGTCAT--ACTACG.................................................................21188.0088341300401
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19184.00848400000
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................25178.007859102133
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................18178.007845105027
.........................................................................AGCATCAGCGTCTGTACGGT..............................................................................................................................................20176.00763300664
..............................................................................................GAGTATTACATCAGGTACTGGTC......................................................................................................................23156.00565600000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23155.00555500000
............................................................................................TTGAGTATTACATCAGGTACTGGT.......................................................................................................................24154.00545300010
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................22151.00515000010
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCC...............................................................23144.00441000430
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................25143.004365102110
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................20142.00422000400
..............................................................................................GAGTATTACATCAGGTACTGGC.......................................................................................................................22142.00429000330
.............................................................................................TGAGTATTACATCAGGTACTGGTTC.....................................................................................................................25140.004014002420
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................24139.00392600139
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................18138.00383800000
....................................................................................................................................................AGTACTTATGTCAT--ACTACGC................................................................21138.003818200180
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................21138.00382702090
........................................................................CAGCATCAGCGTCTGTACGGT..............................................................................................................................................21136.00368111223
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21135.00353500000
.............................................................................................TGAGTATTACATCAGGTACTGGTCA.....................................................................................................................25133.00338000025
...................................................................................................................................................CAGTACTTATGTCAT--ACTAC..................................................................20131.00311200280
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................21130.00302800110
..............................................................................................GAGTATTACATCAGGTACTGGTG......................................................................................................................23128.00281900090
..................................................................................................ATTACATCAGGTACTGGC.......................................................................................................................18127.00270000270
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................22126.00262600000
................................................................................................GTATTACATCAGGTACTG.........................................................................................................................18121.00212100000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................26121.00211520130
..........................................................T-------------CAGCATCAGCGTCTGTACGGT..............................................................................................................................................22119.00192121211
...........................................................................CATCAGCGTCTGTACGGT..............................................................................................................................................18118.0018180162
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................19115.00151001013
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................24113.0013800014
.............................................................................................TGAGTATTACATCAGGTACTGGTGA.....................................................................................................................25113.00131200001
.............................................................................................TGAGTATTACATCAGGTACTGTC.......................................................................................................................23113.0013400045
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................25112.0012600006
..............................................................................................GAGTATTACATCAGGTACTGC........................................................................................................................21111.00111100000
droVir3
A-GCAGC-----------------CGCATC--A---ACAGCCGCA-------TCAGCAT-------------CCGCATCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCATTTAACTAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CAGTGGGCGCA-CTAACCGCATGCCACGC----C-TTT--CAAAAATGTT-----T--ASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................231679109.00679109368216236942711939512808536114952963322136111335442234985299922052011168972272546116647152551661931324240646934110732040240113454108252721171851031888021335251713644641441061182552771622301777460250153618502148637724287692955516141882731035365586099848455002018302635
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................221302519.00302519549253100881364157812091873173455420318145446102829211764269551227353042496298564923188425151617238623832182104156901423003001720239310811203067825710178128786548481573512117976705743520817987434648184029233246103693594464104150
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................211153804.001538047252671172726689271938020416318901392178730778573644427799411248165826312055552740891458931440100643134910857951181521076780094640000010001152015421822275565029779637110251112848691115190541034
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................24169437.0069437208299963032601175154102021001701111130398621227421343844272195755189191899161201707311147610014533890010020221292551410910421608941473111112813700027025934017564547800100
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................24121920.00219201616747698431080342350000200143872781371635451894031492723146234782097476614504916677291187112973100000022065343231245347510531134210210161181116631387901000
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................20119067.001906744423270102024914202500004525244925212851371058421097338988229680331041140481210000001010023159115652287609320011377154110888011525137301000
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................19112940.001294020511541229111230000006144744151215013121612873681192451430110130114221710172543808239735714127727407720520022221968144212452149125300000
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2119195.00919510892451000000000000000000176893047225013110004000000000000000000000133130009139410900000
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................2217583.007583102655332819130139021000071610161281761334262319301621788718654302740013212900000000000000004184414770193520039957245622249135201202
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................2414973.004973442511818381030100043922527823651846259310116713368176331094188884710576812693000100010001000101681171869101113161514230625420315
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................2313381.0033812615372318519612000058361463521729243246232214131323621576447655533311423102131644727112661373084122720215813018614532255
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2212618.002618202015386240200003010328041010122722641463990114010051700000000000100010016173123000154468700000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGC................................................................2211918.001918102642910105100000016121114124101414107178725033314911035603030019220000110020221420205201045690011511159141100000
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................2511584.0015840031331300000316602153298535813399907539881548901661221141881010100000010000000061041298732413106121030023
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................2311580.00158026228652619281120800004511423121128111438237911950195060020112640000000000000000000111518082500015232500000
..........................................................................GCATCAGCGTCTGTACGGT..............................................................................................................................................1911570.00157021628221624112211912214000020101251263532416739860340000715000000000001202100048470000001171334758576800010
.............................................................................................TGAGTATTACATCAGGTACTGGTCA.....................................................................................................................2511441.0014412015293310010100220211792712114261513040596364044165451210000000000000000000111472200010004000000
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................2411415.00141516292701634230000541433102391222281585170641581130210124001001014125232202166153310110979569471227400000
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................2011084.001084009990030000000000000020101113102721608000003000000000000000000000101000001211000000
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................181966.0096620941027444832510104434235012581619276385920490116001128900000000000000002100122862171100031043010010
...........................................................................CATCAGCGTCTGTACGGT..............................................................................................................................................181938.009386715810116821583100000000002200601117201421028000011300000111000010100014100000001131216183407600000
.............................................................................................TGAGTATTACATCAGGTACTGGTCC.....................................................................................................................251872.008721813561400030000000002290100111117208117295014000008000000000000000003000221100000001000000
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................181819.0081901220624370500002455234546291810311372127491040600011533000000000000000000112150386400001000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................261735.007350030300000004000001020003838117516614780829180417000000000000000000001000428105171000220021
.............................................................................................TGAGTATTACATCAGGTACTGGTTC.....................................................................................................................251554.005540020160000000001002115110134488167461620120000029000000000000000000010201300000000000001
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191522.00522005220000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................201468.00468004344100000000000000010001010292503000001000000000000000000000001300000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................231450.00450433931925410200000111006035021310111148014000051900000000001000100102550282800222152210121700002
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................241439.00439001111260000002031110445311119136506714596213102794130000000000000000000005028105100002141022
.........................................................................CGCATCAGCGTCTGTACGGT..............................................................................................................................................201415.0041519230321335313970000000009003236214181728030000270000000000101000000215900000015171617800001
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................221358.003581238610230200010000001211101134541117112301000003000000000000000000004403120021111300000
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................191357.00357103521156202000000130019012410294544611022000012490000000000000000000314522700001000000001
...................................................................................................................................................CAGTACTTATGTCAT--ACTACG.................................................................211333.00333213723200000000762763074310915104234174103100056000000000000000000100000900085448900000
.............................................................................................TGAGTATTACATCAGGTACTGGTCCT------------........................................................................................................261299.002993000001000000010100116010001052613210608000008000000000000000000000100100000401000000
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................181297.0029710148141100100000000005000101022333060000250000000000000001000000761310200000010121
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................211279.00279101120450100000000133150240152166172204000024000000000000000000000070100000130100000
........................................................................CCGCATCAGCGTCTGTACGGT..............................................................................................................................................211249.0024913160154178200000000010511533381116175305000024000000000010000000001800000094246100000
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................191226.002261018721000010000000000100000011112303001001000000000000000000010102210100100000010
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................201214.00214106012310010000200100402545371143570900003130000000000000000000400170000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................221206.00206103130101000000000011105123322530133316000001000000000000000002100605422140136310000
..................................................................................................ATTACATCAGGTACTGGTC......................................................................................................................191196.0019600311900000000000000201211019126804000031500000000000000001003001100000000001100010
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................211184.001840036012100000003611302645100326226240130000212000000000000000000011000000002000000000
..............................................................................................GAGTATTACATCAGGTACTGGTC......................................................................................................................231179.001790074000000000000100000000011059313020000040000000000000000000000630000001100100000
............................................................................................TTGAGTATTACATCAGGTACTGG........................................................................................................................231163.00163001570000000000000000000010000010100000001000000000000110000000000000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................251150.00150004002000000001001004222106782611252104413212000000000000000000010200000012012100000
.............................................................................................TGAGTATTACATCAGGTACTGGTCG.....................................................................................................................251150.0015092101900020000000001140131000923839010000018000000000000000000000700000000001000000
..........................................................T-------------CCGCATCAGCGTCTGTACGGT..............................................................................................................................................221144.00144403018081520000000004001241341473906000035000000000000000000000600100042100500000
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................251133.001330095120000001020010040110333721117021000010000000000000000000131207200034406500000
.............................................................................................TGAGTATTACATCAGGTACTGGAAA.....................................................................................................................251112.001120060020000001100000001001219310921070539241000000000000000000000002042100100030001
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCT...............................................................231110.001100013120100000002101103102236416451402000042000000000010000100000004000015006200000
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................211104.001040180121000000000021015135011331332001001008000000000000000000001200200000020300000
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................23193.009300750000000000000000010000010240200000000000000000000000000000030000022100000000
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................21192.0092201800000000000120100320200001552706000005000000000000000000001000000020000000000
.................................................................................................TATTACATCAGGTACTGGTC......................................................................................................................20186.0086102000000000000000006002000021001030000030000000000000000000100550000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................24185.008589600200000000011101401000003133702000002000000000000000000001200000002509200000
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19174.007400550100000000000000001000010150500001003000000000000000000001000000000000000000
.........................................................AT-------------CCGCATCAGCGTCTGTACGGT..............................................................................................................................................23170.007010200201020000000200200011346342702000022000000000000000000000100000000000200000
.............................................................................................TGAGTATTACATCAGGTACTGTC.......................................................................................................................23169.006945400200000000000000400110106115803000015000000000000000001001200000002002000000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCA...............................................................23165.006500612100000000100200100000037372700000001000000000000000000000001000010000100000
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................22157.005700300000000000000000060110000080301000000000000000000000000002002000001101000000
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................20155.0055261718000000000000000000000000000200000000000000000000000000010000000000000000000
....................................................................................................................................................AGTACTTATGTCAT--ACTACGC................................................................21154.005400321000000000010010000000002720100000000000000000000000010000004000010010000000
............................................................................................TTGAGTATTACATCAGGTACTGGT.......................................................................................................................24152.005200430000000000000000000002010020000000000000000100000000010000010100000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGCC......................................................................................................................24151.005100102110020000000000100201108911404000001000000000000000000010010000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTTG.....................................................................................................................25150.00503040020000000000000000110130362911000017000000000000000000000100000000301000000
....................................................................................................................GTG------------CCATTTAACTAACAAC........................................................................................19146.004600273000000000000000000001000001000000000000000000000000000100000000011304300001
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................18146.004600401000000000000000000000000000000000000000000000000000000000000000021100100000
...................................................................................................................................................CAGTACTTATGTCAT--ACTAC..................................................................20144.00441231010000000010100000002021130200020001000000000010011000000000000057131000000
...................................................................................................TTACATCAGGTACTGGTC......................................................................................................................18143.004300000600000000000000100210002103010000030000000000000000000001200000000002000000
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................19141.00410043011002000001000020002010261208000005000000000000000000000000000000000000000
................................................................................................GTATTACATCAGGTACTGGTC......................................................................................................................21141.004100210100000000000000000100002111000000120000000000000000000100270000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTGA.....................................................................................................................25139.003900100200000011100000010000211711210010001000000000000000000000100300000001000000
..........................................................................GCATCAGCGTCTGTACGGG..............................................................................................................................................19137.003733200000101000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTAG.....................................................................................................................25137.00370000000000000000000000001001102230000100000000000000000000000000044401000013135
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21137.003720230000000000000000000000000010200000001000000000000000000000000000000202400000
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................22134.003400290000000000000000000000000110100000000000000000000000100001000000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGCT......................................................................................................................24133.00332010020001000000000030002000091601000002000000000000000000002001000000000000000
........................................................CAT-------------CCGCATCAGCGTCTGTACGGT..............................................................................................................................................24132.003200100002010000000000000000113211300000010000000000000000000001200000000010200000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23132.003200240000000000000000001000000000100000000000000000000000000000050000001000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTTAA------------........................................................................................................26131.00310010000000000000000010000024201500311300000000000000000000000000100001110300000
.............................................................................................TGAGTATTACATCAGGTAA...........................................................................................................................19130.00300080000000000000000010000200341401011004000000000000000000000000000000000000000
..........................................................................GCATCAGCGTCTGTACGGC..............................................................................................................................................19130.003023601000000000000000000000000000000000000000000000000000000000000000000000000000
droGri2
A-ATCGC-----------------AGCATC--A---GCATCAGCA-------TCAGCATCCGAAGCAGC-ATC---ACAAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCATTTAACCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CAGTGGGCGCA-CTAACCGCATGCCACGC----C-TAC---------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................2215833.0058335705128
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................2314747.00474737401007
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................211699.0069966534
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................211496.004964960
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................221312.003123120
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................241241.0024120635
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................201227.002272243
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................20159.0059590
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................23139.00392910
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGC................................................................22138.0038380
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................24136.0036342
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................20133.0033330
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................23125.0025250
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................24124.0024240
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................23118.0018711
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................19116.0016160
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................21112.0012120
...................................................................................................................................................CAGTACTTATGTCAT--ACTACG.................................................................21111.0011101
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................18111.001192
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19110.0010100
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................23110.001064
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................1819.00990
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCT...............................................................2319.00972
.......................................................................TC---ACAAGCGTCTGTACGGT..............................................................................................................................................1919.00927
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................2218.00880
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................2018.00880
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................1817.00761
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................2417.00716
............................................................................................TTGAGTATTACATCAGGTACTGG........................................................................................................................2316.00660
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................1916.00660
....................................................................................................................................................AGTACTTATGTCAT--ACTACGC................................................................2115.00550
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................1914.00440
............................................................................................TTGAGTATTACATCAGGTACTGGT.......................................................................................................................2414.00440
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................2514.00422
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................1913.00330
....................................................................................................................GTG------------CCATTTAACCAACAAC........................................................................................1913.00330
.................................................................................................TATTACATCAGGTACTGGTT......................................................................................................................2012.00220
.............................................................................................TGAGTATTACATCAGGTACTGGTGA.....................................................................................................................2512.00220
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................2112.00220
....................................................................................................................................................AGTACTTATGTCAT--ACTACGCT...............................................................2212.00220
...............................................................................................AGTATTACATCAGGTACT..........................................................................................................................1812.00220
.....................................................................................................................................................GTACTTATGTCAT--ACTACGC................................................................2012.00220
...........................................................................................GTTGAGTATTACATCAGGTACTGGT.......................................................................................................................2512.00220
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................2312.00220
........................................................................C---ACAAGCGTCTGTACGGT..............................................................................................................................................1812.00220
.....................................................................................................................TG------------CCATTTAACCAACAAC........................................................................................1811.00110
..............................................................................................GAGTATTACATCAGGTACTGGTAA.....................................................................................................................2411.00110
.............................................................................................TGAGTATTACATCAGGTACTGGTTAC------------........................................................................................................2611.00110
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCA...............................................................2311.00110
.............................................................................................TGAGTATTACATCAGGTACTGGAC......................................................................................................................2411.00110
.............................................................................................TGAGTATTACATCAGGTACTGGTAGT------------........................................................................................................2611.00110
..............................................................................................GAGTATTACATCAGGTACTGGTG......................................................................................................................2311.00110
....................................................................................................................................................AGTACTTATGTCAT--ACTACG.................................................................2011.00110
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCTT..............................................................2411.00101
...................................................................................................................................................CAGTACTTATGTCAT--ACTAC..................................................................2011.00110
.............................................................................................TGAGTATTACATCAGGTACTGGTTG.....................................................................................................................2511.00110
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................2511.00110
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................2111.00101
.............................................................................................TGAGTATTACATCAGGTACTGGTAC.....................................................................................................................2511.00110
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................2511.00110
......................................................................ATC---ACAAGCGTCTGTACGGT..............................................................................................................................................2011.00101
.............................................................................................TGAGTATTACATCAGGTG............................................................................................................................1811.00110
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................2211.00101
.............................................................................................TGAGTATTACATCAGGTACTGGTGGA------------........................................................................................................2611.00110
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................2411.00110
..............................................................................................GAGTATTACATCAGGTACTGGTC......................................................................................................................2311.00110
..............................................................................................GAGTATTACATCAGGTACTGGC.......................................................................................................................2211.00110
.............................................................................................TGAGTATTACATCAGGTACTGGTTCT------------........................................................................................................2611.00110
.............................................................................................TGAGTATTACATCAGGTACTGGTTGA------------........................................................................................................2611.00110
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................2211.00110
.............................................................................................TGAGTATTACATCAGGTCTG..........................................................................................................................2050.20101
droWil2
------------------------------------------------------------------------------CAGCGCCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTTAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACTGCATGTCCACA----C-C-----------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................23165841.00658411055249301554363211981
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................22132130.0032130454274442383351643
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................21110613.001061379779161391518243
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................2014320.004320510345812181159
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2112201.00220102196050
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2211951.001951219084334
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................2411292.001292619292623937
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................2211232.0012329981969263
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................201641.006416634010
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................191531.00531316201068
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................241439.004393030744157
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................241432.00432229621275
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................241292.0029219149111211
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191202.002020202000
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................231194.0019462373839
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................181177.001776975681
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................231172.00172191228167
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGC................................................................221150.0015031011423
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................221132.001321207131
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................211131.001312124131
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................231107.0010770201151
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................201101.001010101000
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................19184.00840492681
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................23178.0078078000
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................18166.0066059160
...................................................................................................................................................CAGTACTTATGTCAT--ACTACG.................................................................21162.00627421111
.............................................................................................TGAGTATTACATCAGGTACTGGTCC.....................................................................................................................25161.0061255004
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................18155.00550203302
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................20148.0048039351
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................25137.00371141201
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19137.0037134011
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................22136.0036130032
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................25133.0033520161
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21128.0028424000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23124.0024024000
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19124.0024024000
............................................................................................TTGAGTATTACATCAGGTACTGGT.......................................................................................................................24124.0024023001
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................20120.0020181001
..............................................................................................GAGTATTACATCAGGTACTGGTC......................................................................................................................23120.0020020000
................................................................................................GTATTACATCAGGTACTG.........................................................................................................................18119.0019019000
............................................................................................TTGAGTATTACATCAGGTACTGG........................................................................................................................23117.0017017000
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................18117.0017017000
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................21116.0016014020
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCT...............................................................23115.001519041
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................26113.0013030100
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCA...............................................................23113.001306070
...................................................................................................................................................CAGTACTTATGTCAT--ACTAC..................................................................20112.001282020
.............................................................................................TGAGTATTACATCAGGTACTGGTCCC------------........................................................................................................26111.0011011000
.............................................................................................TGAGTATTACATCAGGTACTGGTGA.....................................................................................................................25111.001107040
....................................................................................................................................................AGTACTTATGTCAT--ACTACGC................................................................21111.0011010010
...............................................................................................AGTATTACATCAGGTACT..........................................................................................................................18111.0011011000
..............................................................................................GAGTATTACATCAGGTACTGGTG......................................................................................................................23110.0010010000
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................2219.00909000
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................2518.00815011
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................1917.00707000
.............................................................................................TGAGTATTACATCAGGTACG..........................................................................................................................2017.00770000
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................2117.00705020
.............................................................................................TGAGTATTACATCAGGTACTGTA.......................................................................................................................2316.00606000
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................2116.00605010
....................................................................................................................................................AGTACTTATGTCAT--ACTACG.................................................................2016.00606000
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................2416.00604200
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................2415.00550000
............................................................................................TTGAGTATTACATCAGGTACTG.........................................................................................................................2215.00505000
...............................................................................................AGTATTACATCAGGTACTGGTT......................................................................................................................2215.00505000
.............................................................................................TGAGTATTACATCAGGTACTGGCT......................................................................................................................2415.00512020
.............................................................................................TGAGTATTACATCAGGTACTGGTCCT------------........................................................................................................2614.00402002
..............................................................................................GAGTATTACATCAGGTACTGGTCC.....................................................................................................................2414.00404000
...........................................................................................GTTGAGTATTACATCAGGTACTGG........................................................................................................................2414.00404000
...................................................................................................................................................CAGTACTTATGTCAT--ACT....................................................................1814.00431000
................................................................................................GTATTACATCAGGTACTGGTT......................................................................................................................2113.00303000
.............................................................................................TGAGTATTACATCAGGTACTGAC.......................................................................................................................2313.00330000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAT------------........................................................................................................2613.00301020
..............................................................................................GAGTATTACATCAGGTACTGGC.......................................................................................................................2213.00303000
.............................................................................................TGAGTATTACATCAGGTACTGGTTG.....................................................................................................................2513.00303000
..............................................................................................GAGTATTACATCAGGTACTGC........................................................................................................................2113.00311010
.................................................................................................TATTACATCAGGTACTGT........................................................................................................................1813.00330000
..............................................................................................GAGTATTACATCAGGTACTGA........................................................................................................................2113.00303000
.................................................................................................TATTACATCAGGTACTGGTT......................................................................................................................2013.00303000
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................2213.00312000
.............................................................................................TGAGTATTACATCAGGTACTGGTTC.....................................................................................................................2513.00300003
dp5
A-GCCGCCAACTCCGCTAACCATTCGCG--ACG--------------------CGT---TTC----CAGG--ATCCAGCAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTG------------CTTTAAATCCAACAACCAGTACTTATGTTAT--ACTACGCCGTG-CACTGATCGCA-CTAACCGCATGCCAAGA----C-CAAGCCAAAGCCAAAGACA-AA--SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................22174199.00741997358586395410897934396021351723181
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................23148802.004880256269546379585645631813142254177520
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................21119037.001903719315180463521453670714719763
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................2019342.0093422448158130198772014943602
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2116179.00617935998712265112601
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................2413371.00337118229522441142112186333182
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2212705.002705425723415110126150
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................2212606.002606913554310024101379613
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................2311927.001927361167914019126070
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................2011438.00143851416001101140
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................241860.0086052642341172731224210
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................191607.00607753978329294170
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191548.00548154311100100
..........................................................................CCAGCAGCGTCTGTACGGC..............................................................................................................................................191483.0048343657264681260
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................231446.004462251261311148201010
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................241426.00426031629230943330
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................201287.00287028410010010
.........................................................................TCCAGCAGCGTCTGTACGGC..............................................................................................................................................201236.0023628371731151152
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................231189.00189018700100010
...................................................................................................................................................CAGTACTTATGTTAT--ACTACGC................................................................221172.001720609055002100
...........................................................................CAGCAGCGTCTGTACGGC..............................................................................................................................................181167.00167637924219043
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................211138.00138013600010010
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................221136.00136574627210030
..............................................................................................GAGTATTACATCAGGTACTGGTG......................................................................................................................231131.001311102193000051
............................................................................................CTGAGTATTACATCAGGTACTGG........................................................................................................................231121.00121093118000180
........................................................................ATCCAGCAGCGTCTGTACGGC..............................................................................................................................................211112.00112037403163040
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................251108.0010805122116212040
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................20191.0091453349000000
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................22186.0086027560202431
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................18185.0085247202721130
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................23184.00842372012220000
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................24182.00821194061033000
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19171.007116330000040
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19171.007107100000000
............................................................................................CTGAGTATTACATCAGGTACTGGT.......................................................................................................................24170.007005481420010
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................18163.006305910101010
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21160.006065100000030
.............................................................................................TGAGTATTACATCAGGTACTGAC.......................................................................................................................23151.005100500000010
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................20150.005004620110000
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................19145.004503430314000
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................18138.0038019112110040
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................18137.003713330000000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23134.003402900000410
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................22132.003202821000010
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................25130.003001820020440
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................24127.002708100105120
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................21126.002602100000050
...................................................................................................................................................CAGTACTTATGTTAT--ACTACG.................................................................21125.002501911200020
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................21123.002307000004120
..................................................................................................................................................CCAGTACTTATGTTAT--ACTACG.................................................................22123.0023012000000110
..............................................................................................GAGTATTACATCAGGTACTGGC.......................................................................................................................22122.0022011101000000
...............................................................................................AGTATTACATCAGGTACT..........................................................................................................................18120.002002000000000
............................................................................................CTGAGTATTACATCAGGTACTG.........................................................................................................................22119.001901600000030
.............................................................................................TGAGTATTACATCAGGTACTGTA.......................................................................................................................23118.001805000100120
.............................................................................................TGAGTATTACATCAGGTACTGAA.......................................................................................................................23117.001701000000160
................................................................................................GTATTACATCAGGTACTG.........................................................................................................................18117.001701700000000
.....................................................................G--ATCCAGCAGCGTCTGTACGGC..............................................................................................................................................22117.001701300004000
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................25116.00160800001070
..............................................................................................GAGTATTACATCAGGTACTGGTGT.....................................................................................................................24115.001501220010000
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................19115.001501000210020
....................................................................................................................GTG------------CTTTAAATCCAACAAC........................................................................................19115.00150690000000
...............................................................................................AGTATTACATCAGGTACTGGTG......................................................................................................................22114.001401400000000
............................................................................................CTGAGTATTACATCAGGTACT..........................................................................................................................21112.001201200000000
...............................................................................................AGTATTACATCAGGTACTGGTT......................................................................................................................22112.001201200000000
.............................................................C----CAGG--ATCCAGCAGCGTCTGTACGGC..............................................................................................................................................26111.00110100004060
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................21111.00111910000000
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................22111.001101010000000
.............................................................................................TGAGTATTACATCAGGTACTGTAA......................................................................................................................24110.00100100000090
..................................................................CAGG--ATCCAGCAGCGTCTGTACGGC..............................................................................................................................................25110.00100000005050
..............................................................................................GAGTATTACATCAGGTACTGA........................................................................................................................2119.0090701000010
................................................................................................GTATTACATCAGGTACTGGTT......................................................................................................................2119.0090610000020
.............................................................................................TGAGTATTACATCAGGTACTGGTGC.....................................................................................................................2519.0090090000000
.............................................................................................TGAGTATTACATCAGGTACTGGAAA.....................................................................................................................2518.0080300000320
.............................................................................................TGAGTATTACATCAGG..............................................................................................................................1618.0080000000080
.............................................................................................TGAGTATTACATCAGGTACTGGTGA.....................................................................................................................2518.0080310200020
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................2617.0070700000000
...................................................................................................................................................CAGTACTTATGTTAT--ACTACGCT...............................................................2317.0070330100000
.............................................................................................TGAGTATTACATCAGGTACTGGTTC.....................................................................................................................2516.0060201001020
.............................................................................................TGAGTATTACATCAGGTACTGAAA......................................................................................................................2416.0060000000060
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................2416.0062400000000
....................................................................................................................................................AGTACTTATGTTAT--ACTACGC................................................................2116.0060600000000
............................................................TC----CAGG--ATCCAGCAGCGTCTGTACGGC..............................................................................................................................................2716.0060100101030
.............................................................................................TGAGTATTACATCAGGTTT...........................................................................................................................1935.331601400001010
.............................................................................................TGAGTATTACATCAGGTACTGGTGTT------------T.......................................................................................................2715.0050300011000
.............................................................................................TGAGTATTACATCAGGTACTGGCT......................................................................................................................2415.0050300011000
.............................................................................................TGAGTATTACATCAGGTACTGCC.......................................................................................................................2315.0050041000000
droPer2
C---------------------------------------------------------------------------AGCAGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTG------------CTTTAAATCCAACAACCAGTACTTATGTTAT--ACTACGCCGTG-CACTGATCGCA-CTAACCGCATGCCAAGA----C-CAAGCCAAAGCCAAAGCCA-AAGASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................22116404.00164041311554119016998275
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................23114265.001426548783481386113513001609
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................2116059.006059196521153152133314
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2111331.001331613231001
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................2011289.0012897610952491966
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................221695.00695366713354
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................241658.00658849034402660
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................201454.0045414521000
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................221366.00366105198161937
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................181178.001781251336022
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................191128.0012861572152
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................241112.00112215727304
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................241108.001081906362
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................23195.00952801615
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................20174.00740730001
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................23159.005942123011
C---------------------------------------------------------------------------AGCAGCGTCTGTACGGC..............................................................................................................................................18156.0056261400133
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................23156.005624163661
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................19151.00510510000
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................21133.00330320100
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................23131.00310300100
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................19129.0029698024
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................22127.00270260001
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................18125.0025066238
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19125.00253193000
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................18123.00234171001
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................22123.00238130110
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19121.00210210000
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21120.00201190000
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................20117.00170610100
...................................................................................................................................................CAGTACTTATGTTAT--ACTACGC................................................................22116.00161132000
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................24116.0016233026
............................................................................................CTGAGTATTACATCAGGTACTGG........................................................................................................................23116.00160160000
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................25114.00140121010
............................................................................................CTGAGTATTACATCAGGTACTGGT.......................................................................................................................24114.00140100220
..............................................................................................GAGTATTACATCAGGTACTGGTG......................................................................................................................23114.00140140000
..................................................................................................ATTACATCAGGTACTGGG.......................................................................................................................18113.00131201000
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................21111.0011090011
............................................................................................CTGAGTATTACATCAGGTACTG.........................................................................................................................22111.00110110000
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................2518.008021005
.................................................................................................TATTACATCAGGTACTGT........................................................................................................................1818.008710000
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................2217.007061000
...................................................................................................................................................CAGTACTTATGTTAT--ACTACG.................................................................2117.007070000
..................................................................................................ATTACATCAGGTACTGGA.......................................................................................................................1817.007601000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................2316.006060000
..................................................................................................ATTACATCAGGTACTGGC.......................................................................................................................1815.005500000
.............................................................................................TGAGTATTACATCAGGTACTGGCT......................................................................................................................2415.005220010
................................................................................................GTATTACATCAGGTACTG.........................................................................................................................1815.005040010
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................2415.005050000
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................1813.003030000
..............................................................................................GAGTATTACATCAGGTACTGGG.......................................................................................................................2213.003120000
..............................................................................................GAGTATTACATCAGGTACTGGTAA.....................................................................................................................2413.003030000
.............................................................................................TGAGTATTACATCAGGTACTGGAAA.....................................................................................................................2513.003030000
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................2513.003020100
................................................................................................GTATTACATCAGGTACTGT........................................................................................................................1913.003210000
...............................................................................................AGTATTACATCAGGTACTGGTT......................................................................................................................2213.003030000
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................1913.003020001
...................................................................................................................................................CAGTACTTATGTTAT--ACTACGCA...............................................................2313.003021000
............................................................................................CTGAGTATTACATCAGGTACT..........................................................................................................................2113.003030000
.............................................................................................TGAGTATTACATCAGGTACTGGTGTG------------CT......................................................................................................2812.002001001
....................................................................................................................GTG------------CTTTAAATCCAACAAC........................................................................................1912.002020000
.................................................................................................TATTACATCAGGTACTGGTT......................................................................................................................2012.002020000
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................2112.002010010
.................................................................................................TATTACATCAGGTACTGGG.......................................................................................................................1912.002200000
...................................................................................................TTACATCAGGTACTGGTT......................................................................................................................1812.002110000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................2612.002020000
..............................................................................................GAGTATTACATCAGGTACTGGC.......................................................................................................................2212.002010100
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................2112.002101000
droAna3
T-ATCCT-----------------GGAA--ACACACTC--GACAAC--------------------------------TGGCGTCTGTACGGCTGAGTATTACATCAGGTACTGGTGTG------------CCTTTAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCTCCA-------------AAAAA------AAAAACSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................22119358.001935815791155276328856755
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................23118341.001834181331332272237448601370
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................2114914.00491439622215243401271
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................2012227.0022271864108821101125
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2111603.00160314021843356
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................2411350.001350813488127250104
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................221807.00807721123163817
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................231470.004702441202392
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................201317.0031731510001
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................221308.00308153132611015
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................191204.00204139530516
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................231157.001577940017147
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................241154.0015481468496
.........................................ACAAC--------------------------------TGGCGTCTGTACGGC..............................................................................................................................................201149.00149211161155
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191122.0012212110000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGC................................................................221116.0011683290112
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................23180.00807900010
..........................................CAAC--------------------------------TGGCGTCTGTACGGC..............................................................................................................................................19179.007925103482
...........................................AAC--------------------------------TGGCGTCTGTACGGC..............................................................................................................................................18177.007753101337
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................24174.007443211126
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................20170.00706900100
........................................GACAAC--------------------------------TGGCGTCTGTACGGC..............................................................................................................................................21155.005512001402
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................18153.005310249460
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................25148.00485329011
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................21147.00474600010
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................19141.004113212212
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................24139.003912613710
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................22136.003612171402
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................22134.00341870153
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................20133.00330330000
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................18132.00321314185
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................21131.00311900066
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................18131.00312370001
............................................................................................CTGAGTATTACATCAGGTACTGG........................................................................................................................23128.00282140111
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................23128.00281061713
...................................................................................................................................................CAGTACTTATGTCAT--ACTACG.................................................................21127.00272510010
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19122.00221723000
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................20122.0022952060
............................................................................................CTGAGTATTACATCAGGTACTGGT.......................................................................................................................24121.00211331310
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................25118.0018310365
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................22117.0017970010
.....................................C--GACAAC--------------------------------TGGCGTCTGTACGGC..............................................................................................................................................22116.00164101100
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21116.00161310110
..................................................................................................ATTACATCAGGTACTGGC.......................................................................................................................18114.00140140000
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19113.00131300000
....................................................................................................................................................AGTACTTATGTCAT--ACTACGC................................................................21111.00111100000
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................18111.00111010000
..............................................................................................GAGTATTACATCAGGTACTGGC.......................................................................................................................22111.0011380000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23110.0010910000
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................21110.0010302050
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................1918.008300050
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................2218.008501110
..............................................................................................GAGTATTACATCAGGTACTGGTG......................................................................................................................2318.008710000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................2617.007034000
................................................................................................GTATTACATCAGGTACTG.........................................................................................................................1817.007700000
.............................................................................................TGAGTATTACATCAGGTACTGAC.......................................................................................................................2317.007070000
.............................................................................................TGAGTATTACATCAGGTACTGGTTG.....................................................................................................................2517.007200050
....................................TC--GACAAC--------------------------------TGGCGTCTGTACGGC..............................................................................................................................................2316.006200040
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCT...............................................................2316.006510000
....................................................................................................................GTG------------CCTTTAATCCAACAAC........................................................................................1916.006060000
............................................................................................CTGAGTATTACATCAGGTACTG.........................................................................................................................2215.005500000
...............................................................................................AGTATTACATCAGGTACTGGTT......................................................................................................................2214.004400000
................................................................................................GTATTACATCAGGTACTGGC.......................................................................................................................2014.004130000
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................2414.004310000
..............................................................................................GAGTATTACATCAGGTACTGC........................................................................................................................2114.004130000
............................................................................................CTGAGTATTACATCAGGTACT..........................................................................................................................2114.004310000
.............................................................................................TGAGTATTACATCAGGTACTGTC.......................................................................................................................2313.003100200
.............................................................................................TGAGTATTACATCAGGTACTGGTTGT------------........................................................................................................2613.003000021
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................2513.003110001
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................2413.003100200
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCA...............................................................2313.003300000
..............................................................................................GAGTATTACATCAGGTACTGGTAA.....................................................................................................................2413.003030000
droBip1
--------------------------------------------------------------------------------GCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCAACCAGATACCTC--AA--AATATATCCA-AA--SizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------------------------------CAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCATAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATGCCAAAG----C-------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
G-GACCC---------------------------AATC--GAAAGA--------------------------AGAGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTAAAATCGAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCAACCAGAACCC-------------------G--ASizeHit CountTotal NormTotal
No Reads
droEle1
G-GATCC---------------CTCGCG--ACG---TGAGAAGGAA-------CAGCCC-------------AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCCTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCAAAAT----A-C-----------------AAAATASizeHit CountTotal NormTotal
No Reads
droRho1
A-GCC-----------------------------------------------------C-------------AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAACTTAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCAAAA----A-C-----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGCAGC-----------------AGCACCAC---CTGAGGACG--------ACAGCCC-------------CAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCC----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-GCCGG-----------------AGTAAC--A---GAGCCAGCC-AACGCGA--GG---------AACC--AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCACCA--------------------------AA--SizeHit CountTotal NormTotal
No Reads
droEug1
--------------------------------------------------------------------------GGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTTAAATAAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACCGATCGCA-CTAACCGCATGCCA---------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-GCCGC--------------------G--ACGCACTG--AAGGAT-------CGT---CTG----TACG--AAGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAATCCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................2311389268.0013892688696413138252354246378125167116341614191701634177799490146233614861101184190246154271152105343818347891069804130306281421236707136454933111181204030487637029180004826319237900000000000000000187318591432146812913422846277464411512125529814165389540272192813374623123644353871617401622321464143183526476295917441100207421561872334468914850218512111769137710478298845023824216380538455842221721555142349411032120571426911123130272821525374322629135740880363637202416201325080167739175622121125126295179919621587218822263018333131760411459130421142555114912561473763334358364526425139351252371977675632144723823451014236400031722375064976233144716722221145392532226351883400702551778459465044425338681156196277132644146120816277817216113423051152529752346711660454175065693411860274165625696736143271435923047652942726399826663873821537787166979130999814302477158374094250810681362205395193243349925414241123607266114412680671484319594218310881749140655013435048039521415536161534447220315355319127371955475523283711577179
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................211307708.003077081030131341924883471088222210240530103625028650061053660936185111427577115690010366331541957313060567912096121227136934153434120748000031772395499000000000000000004294543663691549658216426134196142497225440374701721267171252741844422618215963220258328261821305442773102222748927138304153478260218233070231036024631336238310710656015710535287011412465311424209716381446140139684017729447470000010074456748660406115164203668100939316744843001405501707128278436544144211282368712340310044861127541813041871427650411633133610725324099551498140552657004102900002583091704180392851388317032752915907819024119216414582126620822136338799939999193336291312967589602315011807516709481291313151833840244048446573547533179532031757467131078285252601412127844961145929883977639912141620942129888623861250742268306317243540
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................221274095.00274095308144163620171003556511811161071103132120200201200000104329730511586305337351963268222522484249398110822413541570007103588500000000000000000404362296250283744846518420639485290133156416158310110109554492521203215545552374618559228662430664794291273115479715311265321872262844721216163548310452635563752393476641951110773412535361177174125650053937041011132000107791187074671017313297984635545357027650001576106935020682621071193828187320923211110827600650210143257611663434167767440351184015414228785010512238643257285455009775050541473452517121303748334612711829608565556511951703473228488144626991699152982061195133127615083213403493682999711255422683913688276321547212151235457376012463054876462471265147441226790297941559438844563105235933
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................201122467.0012246700006137281383441343366008304191011600004215223705553456115111126188782158130649111769592301581371276800031224570000000000000000003403542732651767986616918417213623516232232269338171534856475523566115124118915302272382817514459839911323305784528188117649798152237403326726045538233328391000812111279237322137167817109613272620001170000011113706873876242440316935137500610267286305204340020304662370000031900039032322516911694528265302728436501931642034560111200003423019579181579231686432341783535595771261863524344126244103534523342022412825431484624615001121151211136931244462629164369536022356360122220101444348893941731662845328228243371388108012228826528119313789101004
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................24118018.0018018000041000026330010210415162000000000003187304329177521915615369367284193311600000000000000000000000111161111106132217191216912105066152527544311641560214602762194720219175020101819420221233200001014114002302172861117188644191935240000000000049750487126939608822573400000061912602872120019733320000005241013050000214909884857550287912197005782677372022210038270682351321788827215098012172004181376124191100424224528168392472016903111243484735287553852414634124544565333316582127914500002005528813454464196321175
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................2317289.0072890000010029034000000085242000000000004488731311941988515133101079522718410000000000000000000000051240531615021110621041710842105148120211328332405102103021204026200002001200010027263624338316122210000000000002623020004170109125210000040482032800025320100000916000000020265918111684931519117260000320023140941137010453236719311501119503291524000418501725740939194190412641119141220240291361833836457554937191501815386315201212113391011432135339
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................2215788.0057880000210030021004001001742930000000000061541121129344178953193777000000000000000000000003667211435211019466811345045902151724465353883511313361290100000101022122600003221400220038182218201281411000000000003831023005330100240423000001140126156710128212702000001414001000000163752414069123198355526253000200003100423017530211303117102340268110140015701361111046580834016162025192012126186812156124217001517280023001000176331371639243720931811
.............................................................................................TGAGTATTACATCAGGTACTGGATC.....................................................................................................................2515598.005598000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000039611636000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................2415236.00523600003312230300000000143000000000000827161715317719922261122266514900000000000000000000000874322001421240343239117172869445231590050137612910139041010006041530000031390381111262523272953614813000000040001831012006260811102320000023104194111000202461300006210100000002215914533516033045340024216041810018465009601300412774025330000300443007421000181114321488550000203104071752133980414428410111926202010000005623855000140
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGC................................................................2215054.00505400000202621120000000030107000257162810010145682933317197253024940001036890000000000000000064775460141677822131311830332166009363413767812752915670104070113033522010002201100001120177223667810100000001011100100223071771741780000031811020003093000004400000154210221437385541351369741912496831267000023405015113110441013413201503214453103545202380335204251641108500111181150162184457327423541822466550210121131100431120
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................1914970.004970000000000000001201004515340000633437320459811126120635591295000884716000000000000000003432442414013115017630436157128713143531470377319451294211550184010110081024241141460010602011012137149352202000000000003894038301839335665740130000097105929000058027100100101000000000392012252290108311210354445302215001202215110217439181371413402867061111003201191134251991953057131316314613532201122361721113903574311110000130374751319111463030313
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................2314000.004000000002000010200000002229000000000000450493675559517671334992113930000000000000000000000000212020670081200100229244171220024302123993120011000103060142002410106011000101911618282592000000000001211012000101206112766000001531615810050810100022010002000537429620428245198616100000001670620540483013370210500762037822120561663278281301177037110691213181614232641482540182117181025103034101310041626523343033
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................2313903.0039030000563415105920000000211240200000000022037715323189345222618924551900000000000000000000000210547084401081112412915723137212800610936413870400103030108100020071000230017161113164913162000000000001323016006201601701710000011349333000130470110002300000000017381499461134387101737020700013119003704100104661140300023008130211310300107334847713602320651704271161101121061313102129006797311100100812475151040032262
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................2413728.003728000000000000000000001232000010000001646143254813354716717257817500011247191100000000000000000051211002120001000011021001000105000000020030100110000000000010000010062018141557112425140010000000003020003031103100000272111000201200000012000000000281372263296014283352363200300004714051151282119292024790301612002002000120013040067021111710102101213000114931151004220001320123915150
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2212993.0029930001000000100000000010023000011719000512354318412281811216315300040416000000000000000001420102402348200615111112817221071053213150340351216072000212061810000005205010001101928142636751020000000010025350181022029115231600000131988201012016000000270000002001854844329148106572237127111100008306091265261235611430202125173061720110531231481266878539847301142822344334106723194352372938533430041009356632133260798
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................1812602.00260200000000000000000010108040000000000069116212211114112191000000000000000000000001076110023000000000001013004000000000000000000000000000000000020010200193525222661710000000000100120000010100000000000732376000340407102117000000000237413261184003400010000000029110101000200401021020021211153020003014632163022801420021025757124514415147578008192302100000000343080120200331
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................1811839.001839000000000000000000005180109000194132104044503032914533101119430005442600000000000000000883412001104443551282710815112314161011031741100330200001100257213306000000200000611356172281000000001001140811122414970340001035714738200260730000003200000000033651612123225400100000000650611110850111300204004110228501500311051114150343061017231573212310127003206231110000000042516553124000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACG.................................................................2111203.0012030000000111010000000000035000070000010200001400001052020002117100000000000000000253223290163161305260081012480021011533529211136500030100000001100000010000000004333114000001000000019010014348613800100141100002000000001100000030028105612945942113557710900003201012630110048030010210122044284620156010921000510200023501100412140170022031150230311000021201324120
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2111194.00119400000200030110000000000530000000000101221013001000282100027209000000000000000001114512010026623211210311020001112276185667020001004001012204042010020270000000351312000000000000000914012002182140111160000001040100001050000001000000000089223115106112501923735839000000000020040010000001001200001000001301212011511300012002400001903000050585010000000002000100006000
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................2111194.0011940000340002010000010011251410000000000031232111644355232121407000000000000000000000001000111800033916300131225920137618004111212233026303000000002009140010000110010005910131058020200000000000510300010010000000000161562000604000000350000000000150203310021000200000052023113220160001030160420001561120001202021001000521900000111250702300000000000000000042000003000
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................221830.00830000038133101740000010010240000000000010000046000210241100000000000000000000000001023000101618602094000743130022320030043092000200051530004002110000004442370000000000000001380801013030503100000412017000050100000001000000000061151752125139543000014311000000100006001102000000000000410000015010101001103113040003200130100020221102000000131011410121100
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................191801.008010000000000000000200022020010000000012231022212213115300000000000000000000000011471000500000000000000000000000000000000000000000000000000000400010041057912146000000000000000200000000000000000387120001604000000030000000004109200030010100000004390200000100100000000000100010001062167594131302000001211964122721103350016501220001000424060100100125
.............................................................................................TGAGTATTACATCAGGTACTGGTAC.....................................................................................................................251800.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000010000000000000000001000000000000020000000000000000000000100000000000000000000000000000000000000000000100013010000476309000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................251719.0071900000002000000000000001000000000000001110411112021211000000000000000000000003221074051500011010032010201000001122002000000000000110000210300045734201010000000000000002601000101040000000049522000102000000350000000005631546029245469371161000000010010000151010000000002000000000000509141900000130080000031733000000226100000000000000110200010
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................241656.006560000000000002000000000110000000000011275425151231422117320000000000000000000000001220000200211201433400140100000000010201100000000000000002001000200214521501400000000000001000005020011000000111110000080600005001000000000629012111183619181519000018700530310011930100003100013200041010004112137153600100101204111091723221000584200000000001022502012100
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................211588.0058800009190236310600000000004600000000000023010600121102701000000000000000000000000110117300303507802282111131364000128115172256010000100020100000000000100004415062000000000000002101001701000000000048211200012060000000100000000014710120100500005000110000000110110100001000000012200100130315030100020111101016300003000000100000000000001010002000
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................201543.005430000000000000000002000030000000000000000022010002114000000000000000000000000220200043000001100000421211000013000100200000000000000010022011501000015148171000000000000000100000011000000000008120000200000000020000002007122420210002000000001100000000000001000000000001000000966121204000000001031000050100001002200000010000100010100000263
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCATC.............................................................251502.005020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363139000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCA...............................................................231495.004950000000000000000000000140000000000000001013000020010000000000000000000000000223500022009003000010002000010216000000001300010100201000000000000000021020000000000000000310000000002120000000412000000200000020000000001011061144530591146341100811001100004001000100100010410023132000000000040001101001000103512011103410101000100000020000110100
.............................................................................................TGAGTATTACATCAGGTACTATC.......................................................................................................................231482.00482000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046316000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................201467.00467000001000000000000000101800000000001001010281010116401000191620000000000000000041202101310610201176210061364112811111301052000001040540000300141000001442291000000000000001312030013101407041000003702100011050000000100000000053321061211600000000000000000210300010000000100801000019002131800010000000100011000100000000000000000001000200004000
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................221442.0044200000400010100000000020150000000000010032125600101071121000000000000000000000002101020001011020000112000044000022100004010000000020310001000110010007051560003000000000003403000101000020000063130000205000000000000000006711171024381571531000021000002200003103010100100000005000000170114240000002212010001300100200000000000000001111011009010
....................................................................................................................GTG------------CCTTAAATCCAACAAC........................................................................................191381.00381000000000000000000000002000000000000000000010000000000000000000000000000000045220014562100150102003430007202015701300534100000000000000000000000000000000103020000000000000000000021000000000000000000000000000000000000000000175244154198235200001000000000000120000000000000010000000000000010000009000000000000010000000000000000000000000000
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................211379.0037900002700011310000000000170000000000000120059101000224110000000000000000000000000000300000120820003140050019100017001002500000000000000000000010000000233208100300000000000350100060001000000005301000004030000000100000000022400063000200009200000101000200300000020000000120000001161505060000000030000018300201100000100000000000000101009000
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................251366.00366000000000000001000000000000000000000500301151212244710000602850000000000000000000100000200100000100000000000000000000000000000000000000000010000100211218100200000000000000000000000100000000111000000100000000000000000113204385730710000000101101117100141040100030000100000000040104005300013032101212011000003144003901210041213212313250
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................211356.003560000000002100000000000040000000000013111016211233251000000100000000000000000021100071003124162123317654743029113201101000000000000000000000030000000403543012200000000000120000050101000000001103200005020000002000000000011010259102300000000210101100500210010020011000320011061812543100000001101000002000000000020010001000011200101010011
.............................................................................................TGAGTATTACATCAGGTACA..........................................................................................................................201317.00317000027000002300000000004000000000000000000000000000000000000000000000000000010009200000138011600011000000177000005002001500000000000000000000000000000000000000000000000000000000020000000000000100000000100000000000000000000001100000000001000000000001001000000000000001000000020001000000000011100000000000000000000000000001010010002000
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................201275.0027500001200013121000000000900000000000000000000000001010000000000000000000000000000020001023401520112470042230001238200014900100000000000000000000000000011001000000000000000000200000100000000002100000000000000000000000000001000111000000000000001100000000130101000000003000000020001000000000010001010001100100000010000000000021110002000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................261272.0027200000000000000000000000000000000000001000101020300120000000000000000000000000000000003000010000101000000000100000000000000000000000000000000450012031030010000000000000000000000001000000011110000010000002500000000042002881492914963000000000000000000001000000000200000000000240123120000000002000003911000000023000000000000001001000000
.........................................................................AGGAGCAGCGTCTGTACGGT..............................................................................................................................................201265.0026500000000000000000000012000000000000010000100000000400000000000000000000000000000000000050000000000000000004000000000000000000000000000000000000021112302040000000000000000000000000000000000300000001100000110000000004441822113001100000001000001001001010102101400012000010000000000000000004271401801071160089120151213121041120012003016100
..................................................................................................ATTACATCAGGTACTGG........................................................................................................................171199.0019900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046414548005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014
...........................................................................GAGCAGCGTCTGTACGGT..............................................................................................................................................181180.001800000000000000000000000100000000000002000001000010100000000000000000000000000000000000000000000000000000000020000001000000000000000000000000000000001121020000000000000100000000000000000000151000101000000000020000006231000000010000100001000011003000130200100121000410001000000002000010000440020183722630063130001001000001120010428000
.............................................................................................TGAGTATTACATCAGGTACTGGTTC.....................................................................................................................251168.0016800000000000000000000000000000000000000000010100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100102000000000000000000000010000000000001100000000100000000000000001006026820200006160000000000002000000000000100000000000000000000000000000000001100100000200000000000001000000000000
....................................................................................................................................................AGTACTTATGTCAT--ACTACGC................................................................211167.00167000000000000000000000000000000000000000000000100120010000010000000000000000010192130000100000000000000010001011000000000000000000000000000000000000030000000000000000000000000210102060000004100100000000000000000000000010011419146278100200000000000000000020010000010000000001000002100000000001000001000000000103001000000000000000000100
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191166.00166000000000000000000000003000000000001000000000000000000000320000000000000000000120000000320200101150024173000201200000500000000104002000200000000000000100000000000000000120000060602040000002000000000000000000000000000010011841003000000000000000002102010001000000001000000040100010000010000000010100000000000000000000000010020003001
.............................................................................................TGAGTATTACATCAGGTACTGTC.......................................................................................................................231157.00157000000000000000000000000000000000001125201250016024100400000000000000000000000000010102000202001011000000010000000001000000000010100000000000000004120130110000000000000102000000000000000000010000200000000100000000000002010000000000200000000000020001102003002100110001000604030200000000011101007300700000010000000000000000000000001
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................241153.0015300000200010000000000000000000000000000100000100002400000000000000000000000000101041001000001001070001000000000000000000000000002000100000000020002112100000000000000001010002000002000000092700001010000000100000000013022561057211000000000000000001001000000000000000000000020204100000000012010010300000000112000000000001010200102100
.............................................................................................TGAGTATTACATCAGGTACTGTG.......................................................................................................................231138.001380000000000000000000000000000000000014032121902161725060000000000000000000000000000001310000000020200000000000000000200000000002011000000000000000122002000000000000000000000000000000000000411000000000000000000000000001700000000000000001000000003101000000000010000000000070502030010100000112001601010100000000000000000000000000000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGT................................................................221133.0013300000000000000000000100000000000000001000000001000000000000000000000000000001011000010002010000000000010000000000000000000000000000000000000000000000100000000000000001000001000000100000000100001010000000000000001000010110000110000000040000100000000000000004000012100102000505001400000000131230203401011001021120101003100001600000
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................241133.0013300000000120000000020000000000000000000000030000001400000000000000000000000000000000000002000000010000000000000000090000000000000000000000000000001010400000000000000002020000001001000000030100000010000000000000000001002423321000003624000001000000200000000000000003000000000000010000011000000000000100000000000000000000000000001020
...................................................................................................TTACATCAGGTACTGGT.......................................................................................................................171127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143621000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCT...............................................................231126.00126000000000000000000000021000000000000000000300000201000000000000000000000000002110000001000000000100000000040100000000201000001000000000000000200001103000200000000000000000000010000003000100000020000000000000000000100054143015100000000002102100101000400000330000510020000001010010000001110201400050001403001000010000000101121100
...................................................................................................................................................CAGTACTTATGTCAT--ACTAC..................................................................201126.001260000000000000000000000000000000000100000000000000000000010000000000000000000577800034011001000001000000000170201101000000000000000000000000000000000000000000000006000010000000002000000000001000000000000000000000001000001222000100200001000015101000010000000040001510120010000020006100000100401001000000000010100000000000000000000
.............................................................................................TGAGTATTACATCAGGT.............................................................................................................................171123.001230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843330022130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CCAGTACTTATGTCAT--ACTACG.................................................................221121.001210000000000000000000000000000000000000010002000000100000000000000000000000000134303002002001000022000100001502000010000000000000000000000000000000100000000000000000000101000100101010000020000000000000000000000000000500816104318300200000001001010000010300100110001000000000020010010010000000100000010000000000040000000010000100000
droSim2
C-ATTGC-----------------CGCG--ACGCACTG--AAGGAT-------CGT---CTG----TACG--ATGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTGAAATCCAACAACCAGTACTTGTGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................221153533.001535332593794771713092878264649436510134672427015082736167959108
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................231146634.00146634192470443237844024819183028029302954041505416544341076811195013
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................21166231.00662315602123881154484031385220128728113321353341711312108003
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................22139669.0039669126442648424512800161165280498000
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................20132503.00325037776961831893411917843475653149109196842221
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................19122640.00226401455217242834172291241161231283016011
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................18113660.0013660240312552785174225243201011
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................2215382.005382219231125070065117001000
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................2413299.00329917491711800645738618578432027429000
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................2412915.002915188747464230039232668991324410440000
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................2311716.001716182882499460030281332805000
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................2311612.0016121552521412500197231554333131475000
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2111546.00154611621105119195861172673345001
.....................................................................................................ACATCAGGTACTGGT.......................................................................................................................1511124.00112400000010391111000000
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2211042.00104214272675188185842707021001
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................2311023.001023178444243440022333640415000
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................181971.0097143425221821323846803000
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................201965.009654604871800000000000000
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................201700.00700112213672701400006009000
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................251635.006351352200424816924480786000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACGC................................................................221567.00567373112417454760010498786001
.............................................................................................TGAGTATTACATCAGG..............................................................................................................................161474.00474000000101513445000000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................261458.00458011800232518219660115000
.............................................................................................TGAGTATTACATCAGGTACG..........................................................................................................................201455.004551612821010000000100000
.............................................................................................TGAGTATTACATCAGGT.............................................................................................................................171432.004320000001400426000001
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................221350.00350142623200106979750250000
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................241325.0032591017142511151002500000
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................201233.0023302261100000211001000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACG.................................................................211216.00216171336723106001921766000
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................181197.0019714011801000000000001
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191189.0018953040129900001002000
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................241184.0018410040045851012144000
..................................................................................................ATTACATCAGGTACTG.........................................................................................................................161147.001470000002100144000000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTAC..................................................................201146.00146122130108700002101000
...................................................................................................TTACATCAGGTACTGGT.......................................................................................................................171142.001420000001202137000000
..................................................................................................ATTACATCAGGTACTGG........................................................................................................................171135.0013500000012522113001000
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................241135.001354685110000020000000
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................191132.001322513505500106000000
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................211103.0010311730170000000002000
.............................................................................................TGAGTATTACATCAGGTACTGTA.......................................................................................................................23189.00892852010001121003000
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................21178.0078790560000002103000
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................21173.007391004000157150022000
...........................................................................GAGCAGCGTCTGTACGGT..............................................................................................................................................18172.00723626200000007100000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACGCCG..............................................................24172.0072000066600000000000
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................24172.007210280600452110312000
.............................................................................................TGAGTATTACATCAGGTACTGGAAA.....................................................................................................................25171.0071010000228520348000
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................20168.0068311552021001002000
.........................................................................TGGAGCAGCGTCTGTACGGT..............................................................................................................................................20167.00670201000000131050000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTA...................................................................19167.0067000059101005001000
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................21167.0067427296001109404000
................................................................................................GTATTACATCAGGTACT..........................................................................................................................17160.0060000000110058000000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACGCC...............................................................23159.0059301050300001001000
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................18149.00490609205100214001000
....................................................................................................TACATCAGGTACTGGT.......................................................................................................................16148.0048000000050142000000
..................................................................................................ATTACATCAGGTACT..........................................................................................................................15145.0045000000010044000000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACGCA...............................................................23143.00430002001317002315000
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................25139.0039200033010002100000
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19138.0038000820080014015000
.................................................................................................TATTACATCAGGTACTG.........................................................................................................................17137.0037000000000037000000
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................23135.0035460230000000002000
.............................................................................................TGAGTATTACATCAGGTACTGGCT......................................................................................................................24134.0034820500001000000000
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19130.0030160185000000000000
...................................................................................................TTACATCAGGTACTGG........................................................................................................................16130.0030000000670016001000
..........................................................................GGAGCAGCGTCTGTACGGT..............................................................................................................................................19130.00301112111000000004000
................................................................................................GTATTACATCAGGTACTG.........................................................................................................................18130.0030151480000010001000
....................................................................................................................GTG------------CCTGAAATCCAACAACC.......................................................................................20130.0030000030000000000000
...................................................................................................................................................CAGTACTTGTGTCAT--ACT....................................................................18129.0029210016210007000000
.............................................................................................TGAGTATTACATCAG...............................................................................................................................15129.0029000000000027000101
...............................................................................................AGTATTACATCAGGTACT..........................................................................................................................18128.002874056100004001000
........................................................................ATGGAGCAGCGTCTGTACGGT..............................................................................................................................................21127.0027430100000020116000
.............................................................................................TGAGTATTACATCAGGTACTGAA.......................................................................................................................23125.0025120000101010019000
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................22124.0024212030016000000000
.............................................................................................TGAGTATTACATCAGGTACTGAC.......................................................................................................................23122.002265800000003000000
.................................................................................................TATTACATCAGGTACTGT........................................................................................................................18120.0020614000000000000000
.............................................................................................TGAGTATTACATCAGGTACTGTC.......................................................................................................................23120.0020414000000000101000
............................................................................................TTGAGTATTACATCAGGTACTGGT.......................................................................................................................24120.0020000107000001101000
............................................................................................TTGAGTATTACATCAGGTACTGG........................................................................................................................23120.0020000124000101002000
............................................................................................TTGAGTATTACATCAGGTACTG.........................................................................................................................22119.0019000811000000000000
...................................................................................................................................................CAGTACTTGTGTCAT--A......................................................................16118.0018000000100017000000
.............................................................................................TGAGTATTACATCAGGTACTGAAA......................................................................................................................24117.0017000000001000313000
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................22117.0017010120020011000000
.............................................................................................TGAGTATTACATCAGGTACTAT........................................................................................................................22116.0016411000000001000000
.....................................................................G--ATGGAGCAGCGTCTGTACGGT..............................................................................................................................................22116.0016200000000001112000
...................................................................................................TTACATCAGGTACTG.........................................................................................................................15115.0015000000000015000000
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................19115.0015030200000010000000
.............................................................................................TGAGTATTACATCAGGTACTGTAA......................................................................................................................24114.001439000000200000000
..................................................................................................ATTACATCAGGTACTGGG.......................................................................................................................18113.001306600000001000000
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................25112.001211000012020005000
................................................................................................GTATTACATCAGGTACTGT........................................................................................................................19112.001266000000000000000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23111.001110090000000001000
..................................................................................................ATTACATCAGGTACTGGC.......................................................................................................................18111.001104100000006000000
.................................................................................................TATTACATCAGGTACT..........................................................................................................................16111.001100000011018000000
droSec2
C-ATTGC-----------------CGCG--ACGCACTG--AAGGAT-------CGT---CTG----TACG--ATGGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTGAAATCCAACAACCAGTACTTGTGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................23170889.0070889283649107292444174
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................22138237.00382373405315371830817
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................21120397.00203971653619251001935
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................2014605.0046053896315101293
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2112631.0026312626311
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2212341.0023412253244816
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................2412112.0021121351293352116
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................2011285.0012851283101
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................221829.008295921942023
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................231394.00394292621921
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACGC................................................................221364.003641262919118
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................241342.00342244176813
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191218.00218218000
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................211218.00218208901
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................191203.002031774517
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................231202.0020212229465
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................231193.001931697161
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................221182.0018211352611
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................181139.00139516757
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................201129.00129129000
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACG.................................................................211122.001224910576
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................211119.00119110171
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................23192.009292000
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................19182.00824113253
.........................................................................TGGAGCAGCGTCTGTACGGT..............................................................................................................................................20181.00811646811
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19162.006261001
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................18159.00591819166
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21155.005555000
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................24151.0051209184
........................................................................ATGGAGCAGCGTCTGTACGGT..............................................................................................................................................21150.005004127
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................22143.004337024
.....................................................................G--ATGGAGCAGCGTCTGTACGGT..............................................................................................................................................22141.004103812
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................24140.004035221
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................18134.0034190141
............................................................................................TTGAGTATTACATCAGGTACTGGT.......................................................................................................................24131.003131000
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................25130.003023151
............................................................................................TTGAGTATTACATCAGGTACTGG........................................................................................................................23128.002828000
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................20126.002618350
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19124.002423010
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................21119.001917011
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................22118.001818000
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23118.001818000
....................................................................CG--ATGGAGCAGCGTCTGTACGGT..............................................................................................................................................23117.001711303
...........................................................................GAGCAGCGTCTGTACGGT..............................................................................................................................................18117.00172177
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................22116.001616000
...............................................................................................AGTATTACATCAGGTACT..........................................................................................................................18116.001615001
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................25115.00154344
....................................................................................................................................................AGTACTTGTGTCAT--ACTACGC................................................................21115.001514010
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................21113.001312100
..............................................................................................GAGTATTACATCAGGTAC...........................................................................................................................18112.001212000
............................................................................................TTGAGTATTACATCAGGTACTG.........................................................................................................................22112.001212000
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................24112.00129210
...................................................................................................................................................CAGTACTTGTGTCAT--ACTACGCA...............................................................23111.00117031
..........................................................................GGAGCAGCGTCTGTACGGT..............................................................................................................................................19110.001010000
.............................................................................................TGAGTATTACATCAGGTACTGGTAAA------------........................................................................................................2619.0094032
...................................................................ACG--ATGGAGCAGCGTCTGTACGGT..............................................................................................................................................2418.0081700
.............................................................................................TGAGTATTACATCAGGTACTGGTTA.....................................................................................................................2518.0085210
...............................................................................................AGTATTACATCAGGTACTGGTT......................................................................................................................2218.0088000
.................................................................................................TATTACATCAGGTACTGGTT......................................................................................................................2018.0083500
..............................................................................................GAGTATTACATCAGGTACTGGC.......................................................................................................................2218.0088000
.............................................................................................TGAGTATTACATCAGGTACGT.........................................................................................................................2117.0077000
..................................................................................................ATTACATCAGGTACTGGTT......................................................................................................................1917.0076010
.............................................................................................TGAGTATTACATCAGGTACTGGAT......................................................................................................................2417.0077000
..............................................................................................GAGTATTACATCAGGTACTT.........................................................................................................................2016.0066000
droYak3
A-ACAGC-----------------AGCA--ACA---CCAACAGCAG-------CAACACAAG---CAGC-TCCAGCAGCAGCAGCAGCA-------GCAA------------TGGAGCGGCAACAACGGGAGCAACAACCAAAGGAGCAACAACTATGCCAACAACTACGCGGCGGCAGCAGCCGCCTCCATGTACATGCAACAC----TTC-------------------A--ASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
........................................................................CAGCAGCAGCAGCAGCA-------GCAA------------TGGAGC.....................................................................................................................27118.0018000000000018
..............................................................................CAGCAGCAGCA-------GCAA------------TGGAGCGGC..................................................................................................................2411.00100000010000
..ACAGC-----------------AGCA--ACA---CCAACAGC...............................................................................................................................................................................................2040.25101000000000
.....GC-----------------AGCA--ACA---CCAACAGCAG-------CA....................................................................................................................................................................................2150.20101000000000
droEre2
A-------------------------------------------------------------------------GGAGCAGCGTCTGTACGGTTGAGTATTACATCAGGTACTGGTGTG------------CCTTAAAACCAACAACCAGTACTTATGTCAT--ACTACGCCGTG-CACGGATCGCA-CTAACCGCATG------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................TGAGTATTACATCAGGTACTGGT.......................................................................................................................231231206.0023120636916238320372690278017982151397
.............................................................................................TGAGTATTACATCAGGTACTGG........................................................................................................................22170932.007093262499198529033937781920121
.............................................................................................TGAGTATTACATCAGGTACTG.........................................................................................................................21135359.00353592704651604153522422810
.............................................................................................TGAGTATTACATCAGGTACT..........................................................................................................................2018170.00817063901562549715729106
..............................................................................................GAGTATTACATCAGGTACTGG........................................................................................................................2114778.00477847481422570
..............................................................................................GAGTATTACATCAGGTACTGGT.......................................................................................................................2214599.00459929331251384341518
.............................................................................................TGAGTATTACATCAGGTACTGGTT......................................................................................................................2413011.0030111601335339839301145
..............................................................................................GAGTATTACATCAGGTACTG.........................................................................................................................2012119.0021192116000120
.............................................................................................TGAGTATTACATCAGGTACTGT........................................................................................................................2211220.00122071821410422486
.............................................................................................TGAGTATTACATCAGGTACTGGC.......................................................................................................................231896.00896156499683190106
.............................................................................................TGAGTATTACATCAGGTACTGGA.......................................................................................................................231700.0070040210939284100
.............................................................................................TGAGTATTACATCAGGTAC...........................................................................................................................191505.005053093881587417
.............................................................................................TGAGTATTACATCAGGTACTGGTA......................................................................................................................241458.004583171841760348
.............................................................................................TGAGTATTACATCAGGTACTT.........................................................................................................................211351.003513210725160
..............................................................................................GAGTATTACATCAGGTACT..........................................................................................................................191338.00338333000005
.............................................................................................TGAGTATTACATCAGGTACTGGG.......................................................................................................................231321.00321199507115445
.............................................................................................TGAGTATTACATCAGGTACTGGTG......................................................................................................................241221.00221115563242129
...............................................................................................AGTATTACATCAGGTACTGG........................................................................................................................201211.00211210000100
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGC................................................................221196.001961285902250
..................................................................................................ATTACATCAGGTACTGGT.......................................................................................................................181195.001953415114454838
..............................................................................................GAGTATTACATCAGGTACTGGTT......................................................................................................................231145.001451300002013
...............................................................................................AGTATTACATCAGGTACTGGT.......................................................................................................................211141.001411210031214
.................................................................................................TATTACATCAGGTACTGGT.......................................................................................................................191141.0014111026341672
.............................................................................................TGAGTATTACATCAGGTA............................................................................................................................181119.001192102068280
.............................................................................................TGAGTATTACATCAGGTACTGA........................................................................................................................22196.009678210960
..............................................................................................GAGTATTACATCAGGTACTGT........................................................................................................................21188.008886000110
.............................................................................................TGAGTATTACATCAGGTACTGGTC......................................................................................................................24176.00761653518722
....................................................................................................TACATCAGGTACTGGT.......................................................................................................................16174.007400000074
.............................................................................................TGAGTATTACATCAGGTACTGC........................................................................................................................22171.0071481500710
A-------------------------------------------------------------------------GGAGCAGCGTCTGTACGGT..............................................................................................................................................20170.007070025650
.................................................................................................TATTACATCAGGTACTGG........................................................................................................................18168.0068353012270
...............................................................................................AGTATTACATCAGGTACTG.........................................................................................................................19165.006565000000
............................................................................................TTGAGTATTACATCAGGTACTGG........................................................................................................................23158.005858000000
................................................................................................GTATTACATCAGGTACTGG........................................................................................................................19154.005445101430
.............................................................................................TGAGTATTACATCAGGTACTGGTGT.....................................................................................................................25153.0053154312190
.............................................................................................TGAGTATTACATCAGGTACTA.........................................................................................................................21148.004831020960
..............................................................................................GAGTATTACATCAGGTACTGGTG......................................................................................................................23144.004440310000
.............................................................................................TGAGTATTACATCAGGTACC..........................................................................................................................20141.004143600010
................................................................................................GTATTACATCAGGTACTGGT.......................................................................................................................20139.003923308320
.............................................................................................TGAGTATTACATCAGGTACTGGTAA.....................................................................................................................25136.003621100626
.............................................................................................TGAGTATTACATCAGGTACTTT........................................................................................................................22133.003329003100
...................................................................................................................................................CAGTACTTATGTCAT--ACTACGCT...............................................................23132.003217501270
..............................................................................................GAGTATTACATCAGGTACTGGA.......................................................................................................................22130.003030000000
...................................................................................................................................................CAGTACTTATGTCAT--ACTACG.................................................................21129.002923202020
............................................................................................TTGAGTATTACATCAGGTACTG.........................................................................................................................22128.002828000000
.............................................................................................TGAGTATTACATCAGGTACTGGAA......................................................................................................................24128.0028110201410
............................................................................................TTGAGTATTACATCAGGTACTGGT.......................................................................................................................24128.002828000000
...........................................................................GAGCAGCGTCTGTACGGT..............................................................................................................................................18125.002510012030
.............................................................................................TGAGTATTACATCAGGTACTC.........................................................................................................................21124.002419000500
..............................................................................................GAGTATTACATCAGGTACTGGTA......................................................................................................................23122.002222000000
.............................................................................................TGAGTATTACATCAGGTACTGGTGTG------------CCTTT...................................................................................................31121.002100000021
...................................................................................................TTACATCAGGTACTGGT.......................................................................................................................17121.002100000021
.............................................................................................TGAGTATTACATCAGGT.............................................................................................................................17118.001800000018
...............................................................................................AGTATTACATCAGGTACT..........................................................................................................................18116.001616000000
................................................................................................GTATTACATCAGGTACTG.........................................................................................................................18114.001414000000
....................................................................................................................................................AGTACTTATGTCAT--ACTACGC................................................................21114.001412200000

Generated: 10/20/2015 at 11:45 PM