dgr_9

ATGTAGGTGGCTCAAGATATTTGTTGATTGGCCTTGGTTATGCTAAATTCCAAGTATTCCTTATTGCATAGTTTATAATTGAATACTATACAATCTGGCGTTCTTAGAATTTGTCATAAGACTTCACATAACAAAATGTTGTTAGCAGCCACATCTCTG *********************************..(((((.(((((((.(((.((.((..((((.(((((............))))).))))..)).)).))).))))))).)))))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
......................................................................................TATACAATCTGGCGTTCTTAGA...................................................	22	0	1	193.00	193	181	12
..................................................CAAGTATTCCTTATTGCATAGT.......................................................................................	22	0	1	24.00	24	15	9
......................................................................................TATACAATCTGGCGTTCTTAG....................................................	21	0	1	22.00	22	16	6
......................................................................................TATACAATCTGGCGTTCTTGGA...................................................	22	1	1	10.00	10	9	1
......................................................................................TATACAATCTGGCGTTCTT......................................................	19	0	1	4.00	4	1	3
...................................................AAGTATTCCTTATTGCATAGT.......................................................................................	21	0	1	4.00	4	1	3
......................................................................................TATACAATCTGGCGTTCTTA.....................................................	20	0	1	4.00	4	2	2
......................................................................................TATACAATCTGGCGTTCCTAGA...................................................	22	1	1	3.00	3	3	0
...................................................AAGTATTCCTTATTGCATAGTT......................................................................................	22	0	1	3.00	3	3	0
......................................................................................TATACGATCTGGCGTTCTTAGA...................................................	22	1	1	2.00	2	2	0
......................................................................................TATGCAATCTGGCGTTCTTGGA...................................................	22	2	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTTAGAA..................................................	23	0	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTTCGA...................................................	22	1	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTAGA....................................................	21	3	1	1.00	1	1	0
......................................................................................TATACATTCTGGCGTTCTTAGA...................................................	22	1	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTGTTAGA...................................................	22	1	1	1.00	1	1	0
.....................................................................................CTATACAATCTGGCGTTCTTA.....................................................	21	0	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTTAGAT..................................................	23	1	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCGTAGA...................................................	22	1	1	1.00	1	1	0
..................................................CAAGTATTCCTTATTGCATAG........................................................................................	21	0	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTTAGC...................................................	22	1	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTTGG....................................................	21	1	1	1.00	1	1	0
......................................................................................TACACAATCTGGCGTTCTTAGA...................................................	22	1	1	1.00	1	1	0
..................................................CAAGTATTCCTTATTGCATA.........................................................................................	20	0	1	1.00	1	0	1
......................................................................................TATACAATGTGGCGTTCTTAGA...................................................	22	1	1	1.00	1	1	0
..................................................CAAGTATTCCTTATTGCATAGTTTT....................................................................................	25	1	1	1.00	1	0	1
.......................................................................................ATACAATCTGGCGTTCTTAGA...................................................	21	0	1	1.00	1	0	1
.......................................................................................ATACAATCTGGCGTTCTTAG....................................................	20	0	1	1.00	1	0	1
......................................................................................TATACAATCTGGCGTTCTTGGAT..................................................	23	2	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTTATA...................................................	22	1	1	1.00	1	0	1
......................................................................................TATACAATCCGGCGTTCTTAGA...................................................	22	1	1	1.00	1	1	0
.....................................................................................CTATACAATCTGGCGTTCTTAG....................................................	22	0	1	1.00	1	1	0
......................................................................................TATACCATCTGGCGTTCTTAGA...................................................	22	1	1	1.00	1	1	0
......................................................................................TATACAATCTGGCGTTCTTGGAA..................................................	23	1	1	1.00	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15252:3146976-3147134 +	dgr_9	confident	A------TGT------------AGGTGGCTCAAGATATTTGTTG-----------------ATT----------------GGCC------------------------TT---GGTTATGCTAAATTCCAAGTATTCCTTATTGCATAGTTTATAA--TTGAATACTATACAATCTGGCGTTCTTAGAATTTGTCATAAGACTTCACATAACAAAATG------TT----GTTAGCAGCC--------AC-------------------------------------A--TCTCTG
droMoj3	scaffold_6500:14018190-14018306 +	dmo_16	confident	A------AGATTGAAAA------------T----------------------------------------------------------------------------------TGACTAAGTCATGCTTTGAGTATTCCTTATTGCATAGTTTAC--ATATAATTACTATACAGTCTGGAGCACTTAAAGTTGGGCATAGACAACCGAACAACTTAGGA-----------------------------------------------------------------------------G
droWil2	scf2_1100000004521:8626121-8626325 -	dwi_50	confident	A----------------------TATAGCTCAAAAGTTCAACAT-----AATAA-------TTAAG----------AATTAACTTTGAATTGGAAACGATATTGAA--ATG-AATTTATGCTAAATTCTGAGTATTCCTGATTGCATAGTGTGTATTTGATACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAATGATAAATGACAGTGACA---A----------------T-GAAAAAGA--AAATACCAA----------------------AACAGAAATTGTGTG
droAna3	scaffold_12916:11084798-11084980 +	dan_44	confident	----------------------ATATAGCTCAAAAAACCAGCAC-----AATGT-------ATCGGCCAATAGGCCAATTAACCCGGACC---A------ATCAAT--ATGAGTTTTGTGCCAGATTCTGAGTATTCCTGATTGCATAGCTCTGTGTTGTGACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAAATCTGTGTCAACGGCAGC---A--------------------------GG-------------------------------------A--CTCCAC
droBip1	scf7180000396572:742538-742730 +			T------CGGGGGTATTATGAAATATAGCTCAAAAACACACCAC-----AACGC-------ATCGGCCAATC--------GATC-CCACT---A------ATCAATATACGAGTTTTGTGCCAGATTCTGAGTATTCCTGATTGCATAGCTCTGACTTTTGAATGCTATACGGTCTGGGACACTTTTAACATGGCATCAAATAAAAGTCATCGGCAGC---T--------------------------GGA------------------------------------C--TTCATC
droKik1	scf7180000302389:431053-431217 -			G----------GGTATTATGAAATATGGTCCAAAGCAACTGCAGGCGGTAGTGA-------ATC-------------------------------------------------ATTTGTGCCAGGTTCTGAGTATTCCTGATTGCATAGCTCTGCGTTGGATTCGCTATACGGTCTGGGACACTCGTAACATGGCAGCAAAGCCAAGTCGACGGTGGA---A-AGT----------------------GC-------------------------------------A--ACACTG
droFic1	scf7180000453932:197640-197805 -			A--------------------------------AGAAACTGCAG-GCCAATCGCTCG----AGT----------------GACC------------------------GTGAGTTTTGTGCTACTTTCTGAGTATTCCTGATTGCATAGCTCTGAAAATGAACTGCTATGCTATCAGGGAGACTTCTAACATGGCATCAAATCTGATTCATCCGCGGA---A-GCT----GT------------------G---AACCA----------------------ACGAACG--TCTCTG
droEle1	scf7180000490753:30196-30391 +			T---CATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGGAAGGTGTGCTGT-------GCC----------------AATC------------------------GCGAGCTTTGTGCTAGATTCTGAGTATTCCTGATTGCATAGCTTTGAGTTTGGATTGCTATACGGTCTGGGACACTTCTAACATGGTATCAAATCTAATTCAACAAATGA---A-ACGC-C---------------------AGTCTCATA----------------------GTGATCA--TCCTTG
droRho1	scf7180000778253:33953-34103 -			T------------------GAAATATAGCTCAAAGAAACTGGAAGGCCCATCGC-------ACC----------------AATC------------------------TCAAGTTTTGTGCTAGATTCTGAGTATTCCTGATTGCATAGCTTTGAGTTCTAATTGCTATACGGTCCGGGACACTTCTAACATGGTATCAAATCTAATTCAACTGAA--------------------------------------------------------------------------------
droBia1	scf7180000302422:3830554-3830749 +			TTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAGACTGCAACGCG-------------AAG----------------GACC------------------------GTGAGCTTTGCGCCAGATTCTGAGTATTCCTGATTGCATAGCT-TGAGTTTTGATTGCTATACGGTCTGGGACACTTTTAACATGGTGTCAAATCTGAATTACCTGGAGT---G----------------T-GCAATAGT--GGTTTCACA----------------------AAAAGCA--ATTCGG
droTak1	scf7180000415871:385285-385481 +			TTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGCTCAGCAT-------GCC----------------GACC------------------------TCGAGTTTTGTGCTAGATTCTGAGTATTCCTGATTGCATAGCTTTGAGTTTCGATTGCTATACGGTCTGGGACACTTTTAACATGGCATTAAATCTGATTCAACTAAAGG---A-ACTTGTAGT------------------G---AGCCCACT-------------------------A--TCAACG
droEug1	scf7180000409063:317312-317509 +			G----------GGTATTATGAAATATAGCTCAAAGAAACTGCCGAGCTCATCCTTCCTGCTACC----------------TACC------------------------GCGATGTTTGTGCTACATTCTGAGTATTCCTGATTGCATAGCTCGGAGTTGAGATTGCTATACGGTCAGGGAGGCTTTTAACATGGCTTCAAATCTGATTCAACCAAGGG---G-ACTTACAGT------------------G---TGATAAACAACG---------------------A--TCTTTG
dm3	chr2L:5641006-5641200 +	dme-mir-960	Known_mirbase	T------CGGGGGTATTATGAAATATAGTTTAAAGAAACTGCAATGATTATCGT-------ACC----------------GCCC------------------------ACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGATTCACCTAATAG---A-ATCCGTAGT------------------G---AGCTCGTTATCA---------------------A--GGGCCG
droSim2	2l:5445785-5445974 +	dsi-mir-960	Known_mirbase	A--------------------------------AGAAGCTGCAAGGATCATCGT-------CAC----------------GCCC------------------------ACGGGTTTTGTACCACATTCAGAGTATTCCAGGTTGCATAGCTTTGTGCTACTATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAAATCTGATTCCCCCAAACG---A-ACCCGTAAT------------------G---TGCTCGTTATCATGGGCCGAGTTACCTTTGATCA--TCAGTA
droSec2	scaffold_5:3718773-3718929 +	dse_335	confident	A--------------------------------AGAAGCTGCAAGGATCATCGT-------ACC----------------GCCC------------------------ACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAAATCTGATTCCCCCAAAGG---A-ACCCGTAAT------------------G---TA-----------------------------------CTCTT
droYak3	2L:13552119-13552289 -	dya_163	confident	T------------------GAAATATAGCTCAAAGAAACTGCAAGGATCATCGC-------TTC----------------GCCC------------------------GCGTGTTTTGTACCAGATTCTGAGTATTCCTGATTGCATAGCTTTGGCCTTTGATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAAATCTGATTCAACCGAAGGAAGAAAATC---------------------TA-------------------------------------A--TTCATG
droEre2	scaffold_4929:5729480-5729657 +	der_241	confident	T------CGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGAGCAACGC-------ACC----------------GCCC------------------------GCGTTTTTTGTGCCAGATTCAGAGTATTCCAGATTGCATAGCTTTGGGCTTTGATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA-TCCTATTCAACTGATGG---A-AACC---------------------TG-------------------------------------A--TTCATG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

A------TGT------------AGGTGGCTCAAGATATTTGTTG-----------------ATT----------------GGCC------------------------TT---GGTTATGCTAAATTCCAAGTATTCCTTATTGCATAGTTTATAA--TTGAATACTATACAATCTGGCGTTCTTAGAATTTGTCATAAGACTTCACATAACAAAATG------TT----GTTAGCAGCC--------AC-------------------------------------A--TCTCTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................TATACAATCTGGCGTTCTTAGA............................................................................................................	22	1	193.00	193	12	181
................................................................................................................................CAAGTATTCCTTATTGCATAGT..................................................................................................................................................	22	1	24.00	24	9	15
......................................................................................................................................................................TATACAATCTGGCGTTCTTAG.............................................................................................................	21	1	22.00	22	6	16
......................................................................................................................................................................TATACAATCTGGCGTTCTT...............................................................................................................	19	1	4.00	4	3	1
.................................................................................................................................AAGTATTCCTTATTGCATAGT..................................................................................................................................................	21	1	4.00	4	3	1
......................................................................................................................................................................TATACAATCTGGCGTTCTTA..............................................................................................................	20	1	4.00	4	2	2
.................................................................................................................................AAGTATTCCTTATTGCATAGTT.................................................................................................................................................	22	1	3.00	3	0	3
......................................................................................................................................................................TATACAATCTGGCGTTCTTAGAA...........................................................................................................	23	1	1.00	1	0	1
......................................................................................................................................................................TATACAATCTGGCGTTCTAGA.............................................................................................................	21	1	1.00	1	0	1
.....................................................................................................................................................................CTATACAATCTGGCGTTCTTA..............................................................................................................	21	1	1.00	1	0	1
......................................................................................................................................................................TATACAATCTGGCGTTCTTAGAT...........................................................................................................	23	1	1.00	1	0	1
................................................................................................................................CAAGTATTCCTTATTGCATAG...................................................................................................................................................	21	1	1.00	1	0	1
......................................................................................................................................................................TATACAATCTGGCGTTCTTAGC............................................................................................................	22	1	1.00	1	0	1
................................................................................................................................CAAGTATTCCTTATTGCATA....................................................................................................................................................	20	1	1.00	1	1	0
................................................................................................................................CAAGTATTCCTTATTGCATAGTTTT...............................................................................................................................................	25	1	1.00	1	1	0
.......................................................................................................................................................................ATACAATCTGGCGTTCTTAGA............................................................................................................	21	1	1.00	1	1	0
.......................................................................................................................................................................ATACAATCTGGCGTTCTTAG.............................................................................................................	20	1	1.00	1	1	0
.....................................................................................................................................................................CTATACAATCTGGCGTTCTTAG.............................................................................................................	22	1	1.00	1	0	1

droMoj3

A------AGATTGAAAA------------T----------------------------------------------------------------------------------TGACTAAGTCATGCTTTGAGTATTCCTTATTGCATAGTTTAC--ATATAATTACTATACAGTCTGGAGCACTTAAAGTTGGGCATAGACAACCGAACAACTTAGGA-----------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAA............................................................................................................	22	1	3337.00	3337	14	1	15	24	0	3283
......................................................................................................................................................................TATACAGTCTGGAGCACTTAA.............................................................................................................	21	1	2255.00	2255	9	0	23	32	0	2191
......................................................................................................................................................................TATACAGTCTGGAGCACTTA..............................................................................................................	20	1	1589.00	1589	11	0	9	13	0	1556
................................................................................................................................TGAGTATTCCTTATTGCATAGT..................................................................................................................................................	22	1	914.00	914	39	0	36	44	2	793
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGT..........................................................................................................	22	1	652.00	652	5	0	11	18	0	618
................................................................................................................................TGAGTATTCCTTATTGCATAGTC.................................................................................................................................................	23	1	363.00	363	30	0	1	4	0	328
......................................................................................................................................................................TATACAGTCTGGAGCACTTT..............................................................................................................	20	1	359.00	359	1	0	2	5	0	351
......................................................................................................................................................................TATACAGTCTGGAGCACTT...............................................................................................................	19	1	326.00	326	2	0	4	7	0	313
......................................................................................................................................................................TATACAGTCTGGAGCACTTC..............................................................................................................	20	1	140.00	140	4	0	2	1	0	133
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAG...........................................................................................................	21	1	133.00	133	4	0	2	1	0	126
......................................................................................................................................................................TATACAGTCTGGAGCACTTAT.............................................................................................................	21	1	130.00	130	1	0	0	1	0	128
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAA...........................................................................................................	23	1	68.00	68	0	0	0	2	0	66
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTC.........................................................................................................	23	1	68.00	68	2	0	0	0	0	66
........................................................................................................................................................................TACAGTCTGGAGCACTTAAA............................................................................................................	20	1	42.00	42	0	0	0	3	0	39
......................................................................................................................................................................TATACAGTCTGGAGCACTTCT.............................................................................................................	21	1	35.00	35	0	0	0	0	0	35
......................................................................................................................................................................TATACAGTCTGGAGCACTTTT.............................................................................................................	21	2	25.50	51	1	0	1	1	0	48
................................................................................................................................TGAGTATTCCTTATTGCATAGTT.................................................................................................................................................	23	1	22.00	22	2	0	1	1	0	18
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAT............................................................................................................	22	1	21.00	21	0	0	0	0	0	21
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAT...........................................................................................................	23	1	21.00	21	0	0	0	0	0	21
................................................................................................................................TGAGTATTCCTTATTGCATAG...................................................................................................................................................	21	1	21.00	21	7	0	0	2	0	12
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTT.........................................................................................................	23	1	20.00	20	0	0	0	0	0	20
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTCT........................................................................................................	24	1	15.00	15	0	0	0	0	0	15
......................................................................................................................................................................TATACAGTCTGGAGCACTTATC............................................................................................................	22	1	14.00	14	0	0	1	0	0	13
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAC...........................................................................................................	23	1	11.00	11	0	0	0	0	0	11
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAC............................................................................................................	22	1	10.00	10	0	0	0	0	0	10
......................................................................................................................................................................TATACAGTCTGGAGCACTTTC.............................................................................................................	21	1	10.00	10	1	0	0	0	0	9
........................................................................................................................................................................TACAGTCTGGAGCACTTAA.............................................................................................................	19	1	8.00	8	0	0	0	1	0	7
................................................................................................................................TGAGTATTCCTTATTGCATAGTCA................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	7
................................................................................................................................TGAGTATTCCTTATTGCATAGTCC................................................................................................................................................	24	1	6.00	6	3	0	0	0	0	3
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAAA..........................................................................................................	24	1	6.00	6	0	0	0	0	0	6
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAG...........................................................................................................	23	1	6.00	6	0	0	0	0	0	6
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAGT..........................................................................................................	24	1	6.00	6	0	0	0	0	0	6
......................................................................................................................................................................TATACAGTCTGGAGCACTTATCC...........................................................................................................	23	1	5.00	5	0	0	0	0	0	5
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTTC........................................................................................................	24	1	5.00	5	0	0	0	1	0	4
......................................................................................................................................................................TATACAGTCTGGAGCACTTAG.............................................................................................................	21	1	4.00	4	0	0	0	0	0	4
.................................................................................................................................GAGTATTCCTTATTGCATAGT..................................................................................................................................................	21	1	4.00	4	4	0	0	0	0	0
..............................................................................................................................TTTGAGTATTCCTTATTGCATA....................................................................................................................................................	22	1	4.00	4	0	0	0	1	0	3
..............................................................................................................................TTTGAGTATTCCTTATTGCAT.....................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	4
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTCC........................................................................................................	24	1	3.00	3	0	0	0	0	0	3
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAATC..........................................................................................................	24	1	3.00	3	0	0	0	0	0	3
......................................................................................................................................................................TATACAGTCTGGAGCACTC...............................................................................................................	19	1	3.00	3	0	0	0	0	0	3
.......................................................................................................................................................................ATACAGTCTGGAGCACTTAA.............................................................................................................	20	1	3.00	3	3	0	0	0	0	0
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAACC..........................................................................................................	24	1	3.00	3	0	0	0	0	0	3
......................................................................................................................................................................TATACAGTCTGGAGCACTTTTC............................................................................................................	22	2	3.00	6	0	0	0	0	0	6
.......................................................................................................................................................................ATACAGTCTGGAGCACTTAAA............................................................................................................	21	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................TATACAGTCTGGAGCACTTG..............................................................................................................	20	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................TATACAGTCTGGAGCACTTCTC............................................................................................................	22	1	2.00	2	0	0	0	0	0	2
................................................................................................................................TGAGTATTCCTTATTGCATA....................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
................................................................................................................................TGAGTATTCCTTATTGCATAGCC.................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
................................................................................................................................TGAGTATTCCTTATTGCATAGC..................................................................................................................................................	22	1	2.00	2	0	0	0	1	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAATC...........................................................................................................	23	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTA.........................................................................................................	23	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAGTCA........................................................................................................	26	1	2.00	2	0	0	0	0	0	2
................................................................................................................................TGAGTATTCCTTATTGCATAGTTT................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................TATACAGTCTGGAGCACTCT..............................................................................................................	20	1	2.00	2	0	0	0	0	0	2
................................................................................................................................TGAGTATTCCTTATTGCAT.....................................................................................................................................................	19	1	2.00	2	1	0	0	1	0	0
................................................................................................................................TGAGTATTCCTTATTGCATAGTA.................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.........................................................................................................................................................................ACAGTCTGGAGCACTTAAAGT..........................................................................................................	21	1	2.00	2	1	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTTT........................................................................................................	24	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTCA........................................................................................................	24	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................TATACAGTCTGGAGCACTTTTT............................................................................................................	22	2	1.50	3	0	0	0	0	0	3
................................................................................................................................TGAGTATTCCTTATTGCATAGTTTTT--............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................TTTGAGTATTCCTTATTGCATCT...................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................ACAGTCTGGAGCACTTAA.............................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................TGAGTATTCCTTATTGCATC....................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTTG.............................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTCTT............................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................ATACAGTCTGGAGCACTTAAAGA..........................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................TTTGAGTATTCCTTATTGCA......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAG............................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................TTGAGTATTCCTTATTGCATAGTC.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAGT...........................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAACA..........................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAATCA.........................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTTA........................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................AGTATTCCTTATTGCATAGT..................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................ATACAGTCTGGAGCACTTC..............................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGG..........................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTATCT...........................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAC.............................................................................................................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................TGAGTATTCCTTATTGCATAGTTG................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAGTCT........................................................................................................	26	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGCC.........................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................CTATACAGTCTGGAGCACTTAA.............................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................ATACAGTCTGGAGCACTT...............................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TATACAGTCTGGAGCACT................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................TATACAGTCTGGAGCACTA...............................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTC..............................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................TGAGTATTCCTTATTGCATAGTCCC...............................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TATACAGTCTGGAGCACTTCC.............................................................................................................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTA..............................................................................................................	18	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAGTTT........................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................AGTCTGGAGCACTTAAAGT..........................................................................................................	19	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTTAAAGTT.........................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAA...........................................................................................................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAAGTCAA.......................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACAGTCTGGAGCACTTAAG............................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................TTTGAGTATTCCTTATTGCATC....................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................ACAGTCTGGAGCACTTAAAGTC.........................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TATACAGTCTGGAGCACTCTC.............................................................................................................	21	3	0.33	1	0	0	0	0	0	1
......................................................................................................................................................................TATACAGTCTGGAGCACTCTT.............................................................................................................	21	4	0.25	1	0	0	0	0	0	1

droWil2

A----------------------TATAGCTCAAAAGTTCAACAT-----AATAA-------TTAAG----------AATTAACTTTGAATTGGAAACGATATTGAA--ATG-AATTTATGCTAAATTCTGAGTATTCCTGATTGCATAGTGTGTATTTGATACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAATGATAAATGACAGTGACA---A----------------T-GAAAAAGA--AAATACCAA----------------------AACAGAAATTGTGTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................TGAGTATTCCTGATTGCATAGT..................................................................................................................................................	22	6	296.00	1776	8	37	1449	64	218
......................................................................................................................................................................TATACGGTCGGGGAAACTTTTA............................................................................................................	22	1	49.00	49	5	0	44	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTTTT.............................................................................................................	21	1	33.00	33	5	0	28	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAG...................................................................................................................................................	21	6	17.17	103	31	10	53	0	9
......................................................................................................................................................................TATACGGTCGGGGAAACTTTTAA...........................................................................................................	23	1	17.00	17	9	1	7	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTTTTC............................................................................................................	22	1	9.00	9	1	0	8	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTTT..............................................................................................................	20	1	8.00	8	0	1	7	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTT...............................................................................................................	19	1	3.00	3	0	0	3	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTTTTAAA..........................................................................................................	24	1	2.00	2	2	0	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAGT..................................................................................................................................................	23	6	1.33	8	0	0	8	0	0
................................................................................................................................TGAGTATTCCTGATTGCATA....................................................................................................................................................	20	6	1.33	8	0	1	2	1	4
......................................................................................................................................................................TATACGGTCGGGGAAACTTTC.............................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTTTCCC...........................................................................................................	23	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTTTTCC...........................................................................................................	23	1	1.00	1	1	0	0	0	0
.................................................................................................................................GAGTATTCCTGATTGCATAGT..................................................................................................................................................	21	7	0.86	6	0	5	0	0	1
................................................................................................................................TGAGTATTCCTGATTGCAT.....................................................................................................................................................	19	6	0.50	3	0	0	1	0	2
..................................................................................................................................AGTATTCCTGATTGCATAGT..................................................................................................................................................	20	7	0.43	3	0	0	3	0	0
......................................................................................................................................................................TATACGGTCGGGGAAACTTTCT............................................................................................................	22	3	0.33	1	0	0	1	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGG..................................................................................................................................................	22	6	0.33	2	1	1	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGA..................................................................................................................................................	22	6	0.33	2	0	0	2	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGTT.................................................................................................................................................	23	6	0.33	2	0	0	2	0	0
....................................................................................................................................TATTCCTGATTGCATAGTGTGTATT...........................................................................................................................................	25	7	0.29	2	0	1	0	1	0
................................................................................................................................TGAGTATTCCTGATTGCATAGAA.................................................................................................................................................	23	6	0.17	1	0	0	1	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGTCA................................................................................................................................................	24	6	0.17	1	0	0	1	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGC..................................................................................................................................................	22	6	0.17	1	0	0	0	0	1
................................................................................................................................TGAGTATTCCTGATTGCATAGCT.................................................................................................................................................	23	6	0.17	1	0	0	1	0	0
..............................................................................................................................TCTGAGTATTCCTGATTGCATAGTGTG...............................................................................................................................................	27	6	0.17	1	0	0	0	1	0
................................................................................................................................TGAGTATTCCTGATTGCATAGTG.................................................................................................................................................	23	6	0.17	1	0	0	0	0	1
............................................................................................................................ATTCTGAGTATTCCTGATTGCATAG...................................................................................................................................................	25	6	0.17	1	0	1	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAG...................................................................................................................................................	22	6	0.17	1	0	0	1	0	0
....................................................................................................................................TATTCCTGATTGCATAGT..................................................................................................................................................	18	7	0.14	1	0	1	0	0	0

droAna3

----------------------ATATAGCTCAAAAAACCAGCAC-----AATGT-------ATCGGCCAATAGGCCAATTAACCCGGACC---A------ATCAAT--ATGAGTTTTGTGCCAGATTCTGAGTATTCCTGATTGCATAGCTCTGTGTTGTGACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAAATCTGTGTCAACGGCAGC---A--------------------------GG-------------------------------------A--CTCCAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................TGAGTATTCCTGATTGCATAGC..................................................................................................................................................	22	1	146.00	146	22	1	0	15	45	63
................................................................................................................................TGAGTATTCCTGATTGCATAG...................................................................................................................................................	21	1	57.00	57	11	0	0	7	35	4
................................................................................................................................TGAGTATTCCTGATTGCATAGCT.................................................................................................................................................	23	1	56.00	56	2	0	0	5	39	10
......................................................................................................................................................................TATACGGTCTGGGACACTTCT.............................................................................................................	21	1	38.00	38	2	0	0	0	33	3
........................................................................................................................................................................TACGGTCTGGGACACTTCTAAC..........................................................................................................	22	1	36.00	36	9	0	0	1	7	19
........................................................................................................................................................................TACGGTCTGGGACACTTCTAACA.........................................................................................................	23	1	26.00	26	12	0	0	0	7	7
...............................................................................................................................CTGAGTATTCCTGATTGCATAGC..................................................................................................................................................	23	1	25.00	25	3	0	0	1	18	3
...............................................................................................................................CTGAGTATTCCTGATTGCATAG...................................................................................................................................................	22	1	21.00	21	3	0	0	4	12	2
..............................................................................................................................TCTGAGTATTCCTGATTGCAT.....................................................................................................................................................	21	1	18.00	18	3	0	0	1	12	2
......................................................................................................................................................................TATACGGTCTGGGACACTTC..............................................................................................................	20	1	16.00	16	0	0	0	0	16	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAGCT.................................................................................................................................................	24	1	16.00	16	0	0	0	1	9	6
......................................................................................................................................................................TATACGGTCTGGGACACTTCTAA...........................................................................................................	23	1	15.00	15	0	0	0	0	10	5
.............................................................................................................................TTCTGAGTATTCCTGATTGCAT.....................................................................................................................................................	22	1	13.00	13	0	0	0	4	9	0
......................................................................................................................................................................TATACGGTCTGGGACACTTCTA............................................................................................................	22	1	13.00	13	3	0	0	0	6	4
........................................................................................................................................................................TACGGTCTGGGACACTTCTAA...........................................................................................................	21	1	11.00	11	3	0	0	1	2	5
.............................................................................................................................TTCTGAGTATTCCTGATTGCA......................................................................................................................................................	21	1	9.00	9	2	0	0	0	6	1
........................................................................................................................................................................TACGGTCTGGGACACTTCTA............................................................................................................	20	1	8.00	8	2	0	0	1	4	1
..................................................................................................................................AGTATTCCTGATTGCATAGCTC................................................................................................................................................	22	1	7.00	7	3	0	0	2	2	0
..................................................................................................................................AGTATTCCTGATTGCATAGCT.................................................................................................................................................	21	1	6.00	6	0	0	0	0	6	0
................................................................................................................................TGAGTATTCCTGATTGCATAGCTT................................................................................................................................................	24	1	5.00	5	0	0	0	0	2	3
........................................................................................................................................................................TACGGTCTGGGACACTTCT.............................................................................................................	19	1	4.00	4	3	0	0	0	0	1
..............................................................................................................................TCTGAGTATTCCTGATTGCATA....................................................................................................................................................	22	1	4.00	4	0	0	0	2	1	1
......................................................................................................................................................................TATACGGTCTGGGACACTTT..............................................................................................................	20	1	4.00	4	0	0	0	0	4	0
...............................................................................................................................CTGAGTATTCCTGATTGCAT.....................................................................................................................................................	20	1	3.00	3	0	0	0	0	3	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAGCTT................................................................................................................................................	25	1	3.00	3	0	0	0	0	3	0
..................................................................................................................................AGTATTCCTGATTGCATAGCTCT...............................................................................................................................................	23	1	3.00	3	0	0	0	0	3	0
.................................................................................................................................GAGTATTCCTGATTGCATAGC..................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................CTATACGGTCTGGGACACTTC..............................................................................................................	21	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAGT..................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................CTGAGTATTCCTGATTGCATA....................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................TATACGGTCTGGGACACTT...............................................................................................................	19	1	2.00	2	1	0	0	0	1	0
.........................................................................................................................................................................ACGGTCTGGGACACTTCTAACA.........................................................................................................	22	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................GCTATACGGTCTGGGACACTTC..............................................................................................................	22	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTCT.............................................................................................................	20	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTCTT............................................................................................................	22	1	2.00	2	0	0	0	0	2	0
......................................................................................................................................................................TATACGGTCTGGGACACTTCTAT...........................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................TACGGTCTGGGACACTTCTAT...........................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................................................................................................................................TGAGTATTCCTGATTGCATAGCA.................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................AGTATTCCTGATTGCATAGC..................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................GCTATACGGTCTGGGACACT................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................GAGTATTCCTGATTGCATAG...................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................GTATTCCTGATTGCATAGCTC................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTCA.............................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................GAGTATTCCTGATTGCATAGCT.................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTCTT............................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................AGTATTCCTGATTGCATAGCTT................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droBip1

T------CGGGGGTATTATGAAATATAGCTCAAAAACACACCAC-----AACGC-------ATCGGCCAATC--------GATC-CCACT---A------ATCAATATACGAGTTTTGTGCCAGATTCTGAGTATTCCTGATTGCATAGCTCTGACTTTTGAATGCTATACGGTCTGGGACACTTTTAACATGGCATCAAATAAAAGTCATCGGCAGC---T--------------------------GGA------------------------------------C--TTCATC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G----------GGTATTATGAAATATGGTCCAAAGCAACTGCAGGCGGTAGTGA-------ATC-------------------------------------------------ATTTGTGCCAGGTTCTGAGTATTCCTGATTGCATAGCTCTGCGTTGGATTCGCTATACGGTCTGGGACACTCGTAACATGGCAGCAAAGCCAAGTCGACGGTGGA---A-AGT----------------------GC-------------------------------------A--ACACTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A--------------------------------AGAAACTGCAG-GCCAATCGCTCG----AGT----------------GACC------------------------GTGAGTTTTGTGCTACTTTCTGAGTATTCCTGATTGCATAGCTCTGAAAATGAACTGCTATGCTATCAGGGAGACTTCTAACATGGCATCAAATCTGATTCATCCGCGGA---A-GCT----GT------------------G---AACCA----------------------ACGAACG--TCTCTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T---CATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGGAAGGTGTGCTGT-------GCC----------------AATC------------------------GCGAGCTTTGTGCTAGATTCTGAGTATTCCTGATTGCATAGCTTTGAGTTTGGATTGCTATACGGTCTGGGACACTTCTAACATGGTATCAAATCTAATTCAACAAATGA---A-ACGC-C---------------------AGTCTCATA----------------------GTGATCA--TCCTTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T------------------GAAATATAGCTCAAAGAAACTGGAAGGCCCATCGC-------ACC----------------AATC------------------------TCAAGTTTTGTGCTAGATTCTGAGTATTCCTGATTGCATAGCTTTGAGTTCTAATTGCTATACGGTCCGGGACACTTCTAACATGGTATCAAATCTAATTCAACTGAA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAGACTGCAACGCG-------------AAG----------------GACC------------------------GTGAGCTTTGCGCCAGATTCTGAGTATTCCTGATTGCATAGCT-TGAGTTTTGATTGCTATACGGTCTGGGACACTTTTAACATGGTGTCAAATCTGAATTACCTGGAGT---G----------------T-GCAATAGT--GGTTTCACA----------------------AAAAGCA--ATTCGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGCTCAGCAT-------GCC----------------GACC------------------------TCGAGTTTTGTGCTAGATTCTGAGTATTCCTGATTGCATAGCTTTGAGTTTCGATTGCTATACGGTCTGGGACACTTTTAACATGGCATTAAATCTGATTCAACTAAAGG---A-ACTTGTAGT------------------G---AGCCCACT-------------------------A--TCAACG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G----------GGTATTATGAAATATAGCTCAAAGAAACTGCCGAGCTCATCCTTCCTGCTACC----------------TACC------------------------GCGATGTTTGTGCTACATTCTGAGTATTCCTGATTGCATAGCTCGGAGTTGAGATTGCTATACGGTCAGGGAGGCTTTTAACATGGCTTCAAATCTGATTCAACCAAGGG---G-ACTTACAGT------------------G---TGATAAACAACG---------------------A--TCTTTG	Size	Hit Count	Total Norm	Total
No Reads

dm3

T------CGGGGGTATTATGAAATATAGTTTAAAGAAACTGCAATGATTATCGT-------ACC----------------GCCC------------------------ACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAAATCAGATTCACCTAATAG---A-ATCCGTAGT------------------G---AGCTCGTTATCA---------------------A--GGGCCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................TGAGTATTCCAGATTGCATAG...................................................................................................................................................	21	1	19260.00	19260	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	2	2	3	2526	0	0	1	0	0	0	0	0	0	0	0	3	8	6	4	2	2	17	24	4	5	7	11	6	16	13	8	13	1	0	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	0	0	2	0	0	0	0	0	0	1	1	2	2	1	61	5	3	78	0	0	0	11	20	14	0	0	5	0	4	12	0	36	4	0	0	46	1	0	2	0	0	0	0	0	0	0	1	0	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	25	28	8	33	85	5	5	8	9	0	0	0	0	0	1	0	16	3	4	6	4	4	0	10	0	1	2	49	11	7	0	11	2	9	20	0	0	0	5	0	9	2562	32	3724	3	3	0	0	2139	2	2045	8	0	0	0	0	0	2	7	0	0	0	0	0	0	2	0	0	68	431	5	34	8	8	34	83	6	7	11	15	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	2	1	109	0	0	91	0	0	0	0	0	1	0	0	2	0	0	1	0	0	0	0	0	1	4	0	0	116	517	23	153	17	95	12	59	0	0	0	1	0	7	25	13	9	1	5	549	16	1	3	6	21	12	20	411	779	359	699	0	0	14	107	17	0	1	1	0	0	0	0	0	0	0	0	39	4	197	7	10	9	8	45	0	2	5	2	0
................................................................................................................................TGAGTATTCCAGATTGCATAGC..................................................................................................................................................	22	1	13950.00	13950	0	0	0	0	1	3	0	1	0	0	1	38	3	0	0	0	0	0	0	0	8	1	18	2270	0	0	0	1	0	0	0	0	0	0	0	18	61	27	23	18	13	61	105	27	29	29	68	14	39	26	49	21	19	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	12	13	6	0	1	3	10	8	0	0	1	6	2	32	3	4	335	3	10	98	1	0	13	25	4	12	0	1	32	0	7	13	5	308	4	0	5	51	0	0	0	0	0	0	0	0	2	0	0	0	0	0	9	17	0	0	0	0	0	2	0	20	0	1	1	1	0	22	59	128	47	123	158	5	0	11	11	0	0	0	0	0	1	9	0	0	0	2	0	1	0	3	2	1	2	26	32	5	0	2	3	5	37	0	2	0	2	1	4	457	40	968	5	4	0	0	304	0	793	9	0	0	0	0	0	3	24	0	0	0	1	0	0	0	0	0	119	592	12	38	71	96	194	517	134	55	222	235	1	1	1	1	0	1	0	0	6	3	0	4	0	0	0	9	2	246	2	4	201	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	1	2	0	0	102	472	15	89	10	47	2	35	2	1	0	0	0	2	5	0	2	2	22	184	19	1	6	11	42	16	23	160	1267	154	265	0	0	27	245	29	2	0	3	0	1	0	0	0	0	0	0	36	5	158	16	30	40	31	168	1	15	10	2	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTAACA.........................................................................................................	23	1	3204.00	3204	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	53	0	2	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	1	1	0	2	3	0	3	2	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	2	1	0	0	0	2	0	0	0	0	1	1	1	0	0	33	0	0	20	0	0	8	11	4	0	0	0	2	0	0	2	0	37	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	6	7	6	1	81	0	2	2	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	3	1	1	0	0	0	6	0	0	0	0	1	0	4	300	8	483	3	0	0	0	169	0	447	5	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	19	16	0	7	18	22	33	107	37	22	68	49	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	149	1	6	5	51	4	30	0	0	0	0	0	0	3	0	0	3	1	13	1	0	0	1	6	0	7	69	352	99	65	0	0	0	33	8	0	0	0	0	0	0	0	0	0	0	0	6	0	51	1	8	5	4	13	0	0	0	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTAAC..........................................................................................................	22	1	2715.00	2715	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	1	46	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	4	0	2	1	0	3	1	1	2	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	3	1	0	3	0	0	0	0	0	0	0	0	0	0	0	15	0	1	33	0	0	1	3	0	2	0	0	0	0	0	0	0	33	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	8	3	3	57	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	3	0	0	0	0	0	0	0	0	0	0	3	0	4	302	10	405	1	0	0	0	217	0	373	0	3	0	0	0	1	2	1	0	0	0	0	0	0	2	0	0	20	40	1	21	17	22	37	122	19	17	57	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	122	4	3	2	39	3	22	0	0	0	0	0	0	1	0	0	1	0	11	1	0	0	0	2	2	7	43	155	63	54	0	0	0	29	14	0	0	0	0	0	0	0	0	0	0	0	17	0	35	3	7	5	4	15	0	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTT.............................................................................................................	21	1	2690.00	2690	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	145	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	2	0	7	0	0	0	2	2	0	0	0	1	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	3	4	2	0	10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	1	2	0	0	0	8	3	0	258	2	658	1	3	0	0	202	1	444	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	14	22	1	32	6	4	9	21	6	1	22	10	2	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	40	1	7	3	15	0	7	1	0	0	0	0	0	1	0	0	0	2	26	0	0	0	0	2	6	9	66	174	53	163	0	0	4	38	9	0	0	0	0	0	0	0	0	0	0	0	16	1	41	2	1	1	8	15	0	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTTA............................................................................................................	22	1	2484.00	2484	0	0	0	0	1	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	123	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	1	0	0	1	0	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	12	0	0	7	0	0	1	2	0	0	0	0	1	0	2	1	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	3	3	2	23	0	7	0	2	0	0	0	0	0	0	4	4	1	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	6	0	0	0	6	1	0	199	1	494	0	5	0	0	152	1	452	0	0	0	0	0	0	2	1	0	0	4	0	0	0	2	0	0	17	33	0	20	12	2	22	41	6	2	33	19	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	65	4	2	0	15	1	9	0	0	0	0	0	0	0	1	0	0	0	24	0	0	0	0	1	0	7	70	123	49	135	0	0	8	48	14	0	0	1	0	0	0	0	0	0	0	0	13	0	33	2	4	5	6	36	0	0	0	1	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTAA...........................................................................................................	21	1	641.00	641	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	1	5	0	0	0	1	1	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	1	0	17	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	48	3	125	0	0	0	0	52	0	89	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	9	11	0	1	1	2	3	12	2	2	8	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	12	0	1	1	9	0	8	0	0	0	0	0	1	0	0	0	0	0	4	1	0	0	1	1	0	0	8	62	14	15	0	0	0	4	4	0	0	0	0	0	0	0	0	0	1	0	4	1	11	0	5	0	2	4	0	0	0	0	0
................................................................................................................................TGAGTATTCCAGATTGCATA....................................................................................................................................................	20	1	544.00	544	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	127	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	4	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	4	0	0	52	1	117	0	0	0	0	39	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	14	0	1	0	0	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0	0	0	7	26	5	8	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	2	0	5	0	2	0	0	1	0	0	0	0	0
................................................................................................................................TGAGTATTCCAGATTGCAT.....................................................................................................................................................	19	1	540.00	540	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	2	3	0	2	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	1	39	4	85	0	0	0	0	37	0	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	16	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	7	14	1	7	1	2	1	0	0	1	0	0	0	0	1	3	2	0	0	7	0	0	1	0	0	0	3	16	72	18	21	0	0	1	5	0	0	0	1	0	0	0	0	0	0	0	0	2	1	6	0	3	2	1	5	0	1	0	0	0
................................................................................................................................TGAGTATTCCAGATTGCATAGCT.................................................................................................................................................	23	1	402.00	402	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	1	1	2	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	4	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	21	0	56	0	0	0	0	9	0	37	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	12	0	3	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	8	0	1	0	2	0	1	1	0	0	0	0	0	1	0	1	0	0	6	1	0	0	0	1	1	2	12	117	9	8	0	0	4	9	4	0	0	1	0	0	0	0	0	0	0	0	2	0	9	1	0	1	0	5	0	0	0	0	0
..................................................................................................................................AGTATTCCAGATTGCATAGCTT................................................................................................................................................	22	1	387.00	387	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	4	0	0	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	37	0	139	1	2	0	0	11	0	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	16	1	2	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	2	0	0	0	0	0	0	1	0	0	0	0	8	0	0	0	0	1	0	0	3	16	7	7	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	4	0	6	0	1	1	0	4	0	0	0	0	0
.............................................................................................................................TTCTGAGTATTCCAGATTGCAT.....................................................................................................................................................	22	1	298.00	298	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	3	0	0	0	2	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	2	0	8	1	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	37	1	25	2	0	0	0	21	0	13	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0	0	3	6	0	0	2	1	8	57	2	2	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	14	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	1	0	0	0	0	0	0	0	0
................................................................................................................................TGAGTATTCCAGATTGCATAGA..................................................................................................................................................	22	1	265.00	265	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	110	8	15	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	1	0	0	0	0	0	0	3	0	15	0	0	0	0	3	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	1	9	4	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTT..............................................................................................................	20	1	245.00	245	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	19	0	71	0	0	0	0	17	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	3	6	10	8	23	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	6	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGAGTATTCCAGATTGCATAGCA.................................................................................................................................................	23	1	202.00	202	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	4	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	20	0	0	0	0	4	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	3	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	18	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	2	2	52	5	3	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0
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................................................................................................................................TGAGTATTCCAGATTGCATAGAA.................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TTCTGAGTATTCCAGATTGCA......................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACAC.................................................................................................................	17	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A--------------------------------AGAAGCTGCAAGGATCATCGT-------CAC----------------GCCC------------------------ACGGGTTTTGTACCACATTCAGAGTATTCCAGGTTGCATAGCTTTGTGCTACTATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAAATCTGATTCCCCCAAACG---A-ACCCGTAAT------------------G---TGCTCGTTATCATGGGCCGAGTTACCTTTGATCA--TCAGTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................TACGATCTGGGACACTTTTAA...........................................................................................................	21	1	5281.00	5281	1	7	0	0	1	0	12	12	0	0	2	0	5	5241	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTT.............................................................................................................	21	1	3162.00	3162	0	11	0	0	25	1	7	9	1	0	3	0	5	3100	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTT..............................................................................................................	20	1	2145.00	2145	0	1	0	1	22	0	1	4	0	0	0	0	1	2115	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTA............................................................................................................	20	1	2138.00	2138	0	0	0	0	4	0	1	1	0	0	0	0	4	2128	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTA............................................................................................................	22	1	1367.00	1367	0	2	0	0	61	1	11	18	0	0	4	0	3	1267	0	0	0
....................................................................................................................................................................GCTGTACGATCTGGGACACTTT..............................................................................................................	22	1	1075.00	1075	0	0	0	0	2	0	0	0	0	0	0	0	4	1069	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTAAC..........................................................................................................	22	1	895.00	895	0	83	7	0	7	0	25	60	0	0	1	0	1	711	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTT.............................................................................................................	19	1	780.00	780	0	2	0	0	1	0	0	2	0	0	2	0	5	768	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTT.............................................................................................................	20	1	379.00	379	0	0	0	0	3	0	0	0	0	0	0	0	0	376	0	0	0
..................................................................................................................................AGTATTCCAGGTTGCATAGC..................................................................................................................................................	20	1	310.00	310	0	0	0	0	303	6	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................AGTATTCCAGGTTGCATAGCTT................................................................................................................................................	22	1	294.00	294	0	1	0	1	231	5	2	0	0	0	50	1	0	3	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTT............................................................................................................	22	1	275.00	275	0	0	0	0	0	0	0	0	0	0	0	0	2	273	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTAACA.........................................................................................................	23	1	272.00	272	0	17	1	0	3	0	18	76	0	0	1	0	0	155	0	0	1
......................................................................................................................................................................TGTACGATCTGGGACACTT...............................................................................................................	19	1	219.00	219	0	1	0	0	15	0	1	0	0	0	1	0	0	201	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTA............................................................................................................	21	1	158.00	158	0	0	0	0	2	0	0	0	0	0	0	0	0	156	0	0	0
..................................................................................................................................AGTATTCCAGGTTGCATA....................................................................................................................................................	18	1	115.00	115	0	0	0	0	114	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................AGTATTCCAGGTTGCATAGCT.................................................................................................................................................	21	1	103.00	103	0	2	0	1	92	1	1	0	0	0	6	0	0	0	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTAA...........................................................................................................	22	1	90.00	90	0	0	0	0	0	0	0	0	0	0	0	0	0	90	0	0	0
....................................................................................................................................................................GCTGTACGATCTGGGACACTT...............................................................................................................	21	1	76.00	76	0	0	0	0	0	0	0	0	0	0	0	0	0	76	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTT..............................................................................................................	19	1	60.00	60	0	0	0	0	0	0	0	0	0	0	0	0	1	59	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTAAA..........................................................................................................	22	1	55.00	55	0	0	0	0	0	0	1	0	0	0	0	0	0	54	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTTT...........................................................................................................	23	1	51.00	51	0	0	0	0	0	0	0	0	0	0	0	0	0	51	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTA.............................................................................................................	21	1	40.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	40	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTT............................................................................................................	21	1	35.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0
..................................................................................................................................AGTATTCCAGGTTGCATAG...................................................................................................................................................	19	1	29.00	29	0	0	0	0	28	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACT................................................................................................................	18	1	28.00	28	0	4	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTA..............................................................................................................	20	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0
.............................................................................................................................TTCAGAGTATTCCAGGTTGCAT.....................................................................................................................................................	22	1	25.00	25	0	0	0	0	22	1	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTAA...........................................................................................................	23	1	23.00	23	0	0	0	0	0	0	1	3	0	0	0	0	0	19	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTT............................................................................................................	20	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	1	21	0	0	0
................................................................................................................................AGAGTATTCCAGGTTGCATAGC..................................................................................................................................................	22	1	20.00	20	0	0	0	0	18	0	0	0	0	0	1	1	0	0	0	0	0
...................................................................................................................................................................TGCTGTACGATCTGGGACACTTT..............................................................................................................	23	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0
..................................................................................................................................AGTATTCCAGGTTGCATAGCTTT...............................................................................................................................................	23	1	16.00	16	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TCAGAGTATTCCAGGTTGCAT.....................................................................................................................................................	21	1	13.00	13	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTAAC..........................................................................................................	23	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTAACAA........................................................................................................	24	1	12.00	12	0	1	0	0	0	0	1	1	0	0	0	0	0	9	0	0	0
....................................................................................................................................................................GCTGTACGATCTGGGACACT................................................................................................................	20	1	8.00	8	0	0	0	0	1	0	0	0	0	0	0	0	0	7	0	0	0
...................................................................................................................................................................TGCTGTACGATCTGGGACACTT...............................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTTT...........................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
..................................................................................................................................................................TTGCTGTACGATCTGGGACACTT...............................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
.............................................................................................................................TTCAGAGTATTCCAGGTT.........................................................................................................................................................	18	1	7.00	7	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTAT...........................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
.....................................................................................................................................................................CTGTACGATCTGGGACACTTT..............................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
....................................................................................................................................................................GCTGTACGATCTGGGACACTTTT.............................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTAT...........................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
................................................................................................................................AGAGTATTCCAGGTTGCA......................................................................................................................................................	18	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GCTGTACGATCTGGGACAC.................................................................................................................	19	1	6.00	6	0	0	0	0	1	0	0	0	0	0	0	0	0	5	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACAC.................................................................................................................	17	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTT..............................................................................................................	18	1	5.00	5	0	0	0	0	2	0	0	1	0	0	0	0	0	2	0	0	0
.............................................................................................................................TTCAGAGTATTCCAGGTTGCA......................................................................................................................................................	21	1	5.00	5	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TTCAGAGTATTCCAGGTTGCATA....................................................................................................................................................	23	1	4.00	4	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTG............................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
...................................................................................................................................................................TGCTGTACGATCTGGGACACT................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTAAA..........................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTAT...........................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTTT...........................................................................................................	21	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACA..................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTTATT..........................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTAACT.........................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTA.............................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.........................................................................................................................................................................ACGATCTGGGACACTTTTA............................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTAA.............................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTA...............................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTA..............................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................................................GTACGATCTGGGACACTTTA.............................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTG.............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................................................GCTGTACGATCTGGGACACTTA..............................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
................................................................................................................................AGAGTATTCCAGGTTGCAT.....................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTAAC..........................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................ACGATCTGGGACACTTTTAA...........................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................................CTGTACGATCTGGGACACTT...............................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............................................................................................................................TCAGAGTATTCCAGGTTGC.......................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CAGAGTATTCCAGGTTGCATAGC..................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTAA.............................................................................................................	19	3	1.67	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
.........................................................................................................................................................................ACGATCTGGGACACTTTTAAC..........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................ACGATCTGGGACACTTTTAACA.........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTT...............................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTTTTAAA..........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................GCTGTACGATCTGGGACACTTTA.............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................CGATCTGGGACACTTTTAA...........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................TGTACGATCTGGGACACTAA..............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................TTCAGAGTATTCCAGGTTGCAA.....................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................ACGATCTGGGACACTTTTT............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................TACGATCTGGGACACTTTTAATC.........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................ATTCCAGGTTGCATAGCTTT...............................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

A--------------------------------AGAAGCTGCAAGGATCATCGT-------ACC----------------GCCC------------------------ACGGGTTTTGTACCACATTCTGAGTATTCCAGATTGCATAGCTTTGTGCTACTATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAAATCTGATTCCCCCAAAGG---A-ACCCGTAAT------------------G---TA-----------------------------------CTCTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................AGTATTCCAGATTGCATAGCTT................................................................................................................................................	22	1	1636.00	1636	5	1386	176	69
..................................................................................................................................AGTATTCCAGATTGCATAGCT.................................................................................................................................................	21	1	142.00	142	1	136	1	4
................................................................................................................................TGAGTATTCCAGATTGCATAGC..................................................................................................................................................	22	1	82.00	82	1	32	43	6
......................................................................................................................................................................TGTACGATCTGGGAGACTTTTA............................................................................................................	22	1	55.00	55	4	45	2	4
................................................................................................................................TGAGTATTCCAGATTGCATAG...................................................................................................................................................	21	1	33.00	33	0	31	0	2
........................................................................................................................................................................TACGATCTGGGAGACTTTTAAC..........................................................................................................	22	1	31.00	31	0	25	5	1
......................................................................................................................................................................TGTACGATCTGGGAGACTTTT.............................................................................................................	21	1	27.00	27	1	25	0	1
........................................................................................................................................................................TACGATCTGGGAGACTTTTAACA.........................................................................................................	23	1	18.00	18	0	10	8	0
........................................................................................................................................................................TACGATCTGGGAGACTTTTAA...........................................................................................................	21	1	9.00	9	0	8	0	1
........................................................................................................................................................................TACGATCTGGGAGACTTTTA............................................................................................................	20	1	6.00	6	1	5	0	0
....................................................................................................................................................................GCTGTACGATCTGGGAGACTTT..............................................................................................................	22	1	6.00	6	0	3	3	0
..................................................................................................................................AGTATTCCAGATTGCATAGCTTT...............................................................................................................................................	23	1	4.00	4	0	2	1	1
................................................................................................................................TGAGTATTCCAGATTGCATAGCT.................................................................................................................................................	23	1	3.00	3	0	2	0	1
........................................................................................................................................................................TACGATCTGGGAGACTTTT.............................................................................................................	19	1	3.00	3	0	3	0	0
........................................................................................................................................................................TACGATCTGGGAGACTTTTAAA..........................................................................................................	22	1	2.00	2	0	2	0	0
......................................................................................................................................................................TGTACGATCTGGGAGACTTT..............................................................................................................	20	1	2.00	2	0	2	0	0
.................................................................................................................................GAGTATTCCAGATTGCATAGCT.................................................................................................................................................	22	1	1.00	1	0	0	1	0
................................................................................................................................TGAGTATTCCAGATTGCATAGCA.................................................................................................................................................	23	1	1.00	1	0	1	0	0
................................................................................................................................TGAGTATTCCAGATTGCATAGT..................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......................................................................................................................................................................GTACGATCTGGGAGACTTTTA............................................................................................................	21	1	1.00	1	0	1	0	0
................................................................................................................................TGAGTATTCCAGATTGCAT.....................................................................................................................................................	19	1	1.00	1	0	0	0	1
..............................................................................................................................TCTGAGTATTCCAGATTGCAT.....................................................................................................................................................	21	1	1.00	1	0	1	0	0
..................................................................................................................................AGTATTCCAGATTGCATAGCTTTT..............................................................................................................................................	24	1	1.00	1	0	1	0	0
................................................................................................................................TGAGTATTCCAGATTGCATAGCC.................................................................................................................................................	23	1	1.00	1	0	1	0	0
................................................................................................................................TGAGTATTCCAGATTGCATAGA..................................................................................................................................................	22	1	1.00	1	0	1	0	0
..................................................................................................................................AGTATTCCAGATTGCATAG...................................................................................................................................................	19	1	1.00	1	0	1	0	0
....................................................................................................................................................................GCTGTACGATCTGGGAGACTTTT.............................................................................................................	23	1	1.00	1	0	0	1	0
..............................................................................................................................TCTGAGTATTCCAGATTGCATA....................................................................................................................................................	22	1	1.00	1	0	1	0	0
..................................................................................................................................AGTATTCCAGATTGCATAGCTA................................................................................................................................................	22	1	1.00	1	0	1	0	0
...................................................................................................................................GTATTCCAGATTGCATAGCTT................................................................................................................................................	21	1	1.00	1	0	1	0	0

droYak3

T------------------GAAATATAGCTCAAAGAAACTGCAAGGATCATCGC-------TTC----------------GCCC------------------------GCGTGTTTTGTACCAGATTCTGAGTATTCCTGATTGCATAGCTTTGGCCTTTGATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAAATCTGATTCAACCGAAGGAAGAAAATC---------------------TA-------------------------------------A--TTCATG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................TGAGTATTCCTGATTGCATAGC..................................................................................................................................................	22	1	57.00	57	0	12	5	3	2	2	33	0	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAG...................................................................................................................................................	21	1	52.00	52	13	14	0	0	2	0	23	0	0	0	0
..................................................................................................................................AGTATTCCTGATTGCATAGCTT................................................................................................................................................	22	1	36.00	36	17	0	0	0	0	2	17	0	0	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTAACG.........................................................................................................	23	1	35.00	35	22	0	0	0	0	0	13	0	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAG...................................................................................................................................................	22	1	35.00	35	6	5	0	0	1	2	21	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTT.............................................................................................................	21	1	26.00	26	0	0	0	0	0	0	26	0	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAGC..................................................................................................................................................	23	1	21.00	21	0	1	1	1	0	0	18	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTTA............................................................................................................	22	1	13.00	13	1	0	0	0	0	0	12	0	0	0	0
..................................................................................................................................AGTATTCCTGATTGCATAGCT.................................................................................................................................................	21	1	8.00	8	6	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTTAA...........................................................................................................	23	1	7.00	7	5	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTAAC..........................................................................................................	22	1	7.00	7	3	0	0	0	0	0	4	0	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGT..................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	6	0	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCATA....................................................................................................................................................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCAT.....................................................................................................................................................	20	1	3.00	3	1	1	0	0	0	0	1	0	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCAT.....................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	1	2	0	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGCT.................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTT..............................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTTT.............................................................................................................	20	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTAA...........................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................GAGTATTCCTGATTGCATAGC..................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCATA....................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
..................................................................................................................................AGTATTCCTGATTGCATAGC..................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CTATACGGTCTGGGACACTT...............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTA............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTTAACGT........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGA..................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................AGTATTCCTGATTGCATAG...................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TTCTGAGTATTCCTGATTGCAT.....................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTTT............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTTTA............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAGA..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................GTATTCCTGATTGCATAGCT.................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................CTGAGTATTCCTGATTGCATAGCT.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................TGCTATACGGTCTGGGACACT................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................TTCTGAGTATTCCTGATTGC.......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................TCTGAGTATTCCTGATTGCAT.....................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGAGTATTCCTGATTGCATAGCA.................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................TTCTGAGTATTCCTGATTGCA......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTTTAA...........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................GAGTATTCCTGATTGCATAG...................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

T------CGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGAGCAACGC-------ACC----------------GCCC------------------------GCGTTTTTTGTGCCAGATTCAGAGTATTCCAGATTGCATAGCTTTGGGCTTTGATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA-TCCTATTCAACTGATGG---A-AACC---------------------TG-------------------------------------A--TTCATG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................AGTATTCCAGATTGCATAGCTT................................................................................................................................................	22	1	644.00	644	0	0	0	3	566	75	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTAA............................................................................................................	22	1	136.00	136	0	0	3	0	126	7	0
...............................................................................................................................CAGAGTATTCCAGATTGCATAG...................................................................................................................................................	22	1	125.00	125	1	0	1	1	108	14	0
................................................................................................................................AGAGTATTCCAGATTGCATAGC..................................................................................................................................................	22	1	90.00	90	0	1	2	0	58	29	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTA.............................................................................................................	21	1	87.00	87	0	0	0	1	76	10	0
..................................................................................................................................AGTATTCCAGATTGCATAGCT.................................................................................................................................................	21	1	78.00	78	0	0	0	0	74	4	0
......................................................................................................................................................................TATACGGTCTGGGACACTTT..............................................................................................................	20	1	59.00	59	2	0	2	0	53	2	0
..............................................................................................................................TCAGAGTATTCCAGATTGCAT.....................................................................................................................................................	21	1	31.00	31	0	0	0	0	25	6	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTTAA............................................................................................................	21	1	20.00	20	1	0	0	0	18	1	0
................................................................................................................................AGAGTATTCCAGATTGCATAG...................................................................................................................................................	21	1	17.00	17	0	0	0	0	16	1	0
...............................................................................................................................CAGAGTATTCCAGATTGCATAGC..................................................................................................................................................	23	1	17.00	17	0	0	0	0	10	7	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTTAAA...........................................................................................................	22	1	15.00	15	0	0	0	0	14	1	0
........................................................................................................................................................................TACGGTCTGGGACACTTTAAA...........................................................................................................	21	1	12.00	12	0	0	0	0	9	3	0
...............................................................................................................................CAGAGTATTCCAGATTGCAT.....................................................................................................................................................	20	1	11.00	11	0	0	0	0	8	3	0
...............................................................................................................................CAGAGTATTCCAGATTGCATA....................................................................................................................................................	21	1	9.00	9	0	0	0	0	8	1	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTAAA...........................................................................................................	23	1	8.00	8	0	0	0	0	7	1	0
..................................................................................................................................AGTATTCCAGATTGCATAGCTTT...............................................................................................................................................	23	1	8.00	8	0	0	0	0	6	2	0
........................................................................................................................................................................TACGGTCTGGGACACTTTAAAC..........................................................................................................	22	1	7.00	7	0	0	0	0	6	1	0
....................................................................................................................................................................GCTATACGGTCTGGGACACTTT..............................................................................................................	22	1	6.00	6	0	0	0	0	6	0	0
..............................................................................................................................TCAGAGTATTCCAGATTGCATA....................................................................................................................................................	22	1	6.00	6	0	0	0	0	6	0	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTTA.............................................................................................................	20	1	6.00	6	0	0	0	0	5	1	0
.....................................................................................................................................................................CTATACGGTCTGGGACACTTT..............................................................................................................	21	1	6.00	6	0	0	0	0	5	1	0
..............................................................................................................................TCAGAGTATTCCAGATTGCA......................................................................................................................................................	20	1	4.00	4	0	0	0	0	4	0	0
...............................................................................................................................CAGAGTATTCCAGATTGCATAGT..................................................................................................................................................	23	1	4.00	4	0	0	0	0	4	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTT...............................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0
...............................................................................................................................CAGAGTATTCCAGATTGCATAGA..................................................................................................................................................	23	1	3.00	3	0	0	0	0	2	1	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTT..............................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTAAT...........................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTA.............................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
..................................................................................................................................................................TTGCTATACGGTCTGGGACAC.................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
..................................................................................................................................................................TTGCTATACGGTCTGGGACACT................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
....................................................................................................................................................................GCTATACGGTCTGGGACACTT...............................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................TTGCTATACGGTCTGGGACACTT...............................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................CTATACGGTCTGGGACACTTTT.............................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................AGTATTCCAGATTGCATAG...................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................TATACGGTCTGGGACACTTTG.............................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................ATACGGTCTGGGACACTTTAAAC..........................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................CTATACGGTCTGGGACACTTTA.............................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................AGTATTCCAGATTGCATAGCTTTG..............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................AGAGTATTCCAGATTGCATAGCA.................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................TTGCTATACGGTCTGGGACA..................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................TGCTATACGGTCTGGGACACTTT..............................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................CAGAGTATTCCAGATTGCATAGCT.................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTAA............................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................ATTGCTATACGGTCTGGGACACTTT..............................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................TACGGTCTGGGACACTTTAAACT.........................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................AGAGTATTCCAGATTGCATAGCT.................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................AGAGTATTCCAGATTGCATAGT..................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................TCAGAGTATTCCAGATTGC.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................TCAGAGTATTCCAGATTGCATAGC..................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................AGTATTCCAGATTGCATAGC..................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................CAGAGTATTCCAGATTGCATAA...................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

dgr_9

scaffold_15252:3147026-3147084 +

Known Ortholog

Canonical miRNA

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.0	-18.4	-18.3