dgr_89

CDS [Dgri\GH14097-cds]; CDS [Dgri\GH14097-cds]; exon [dgri_GLEANR_13999:3]; exon [dgri_GLEANR_13999:2]; intron [Dgri\GH14097-in]

Name	Class	Family	Strand
R1_DYa	LINE	R1	+
TART_DV	LINE	Jockey	-
Gypsy8-I_Dpse-int	LTR	Gypsy	-

##################################################---------------------------------------------------------------################################################## ATTGCGCCCAGCTGCACCTCGCCGAGCATAGCACAAAATGGCAACAACAAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGTTGCAACAACAACAGCAGCAGCAACTCAGCCAGCAGCAGCAGCTCAGCCAGCAGCTAAAGGCGCTCAGCATGTATCCGA ************************************************..((...........((.((.((.(((((....)))))..........)).)).))..))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body
.......CCAGCTGCACCTCGCCGAGCATA.....................................................................................................................................	23	0	1	1.00	1	1
.............................................AACAAGCAGCAGCAACAGCA..................................................................................................	20	0	9	0.11	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14624:1477413-1477575 -	dgr_89	ATT-GCG----CCCAGCTGCACCTC------------------------------------GC---C--------GAGC--------ATAG------------------CA--CAAAA---------TG---------GCAACAACAA--------GCAG------CA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACA---ACAGTTGCAACA---ACA------AC------------AGCAGCAGCAACTC--------A---GCCAGCAG----------C---AG---C---AG----CTCAG--------------------------------------------CCAG---CAGCTAAAGGCGCT-CAGCAT------------------------GTATCCGA
droVir3	scaffold_13042:3341573-3341719 -		AGC-GCA----TTCAACA----------------------GC---------AT------CA-----------------------------GCAACAAATGC---AACAGCAGCAG---------------------------------------------------CA---GCAGCAACAGC---------------AGCAACA-----------------------------------TCAACA---ACAGCAGCAGCAGCA---------AC------------A-------------------GCAGCA----GCAGCAACA-ATTGC---------------------------------AGCAGCAA---CATTGCCAGTCGCCG---------CAG---CAG------------CAGCAG-------------------------CAATCGA
droMoj3	scaffold_6473:11857786-11857945 +		TTGTGC----CG-C-GCTACAACTATCCAGAGCAGCCACACA---------AG------C-----------------------------A---------A---------CACCTGCAG---------CA---------GCAGCAG---------------------CAACAGCAGCAGCAGC---------------AGCAGCA-----------------------------------GCAGCA---ACAGCAGCAGCA---GCA------AC------------A------GCAGCAG-----------------CAG-------CAGC------AGCAGCA---------------------------ACAGCA---------GGAG---------------CAG---CAGGAGCTGGATTTT------------------------CAG---CT
droWil2	scf2_1100000004546:25304-25468 -		ATT-GCA----A-CAACA----------------------GCAGCAGC---A-----------------------------------------ACAACTGA---G---------AC------------------------------------------AACAACAACA---TCAACAACAGCAGCAGCACCAACTGAGACAACA-----------------------------------ACAACA---TGAACAACAACAACA---------TC------------A-------------------ACAGCA----ACAGCAACA-AAAGC---------------------------------AGCAGCAA---------------------CATCAACAA---CAGCAACAGCATTCTCAGCAA------------------------CTGCTCGA
dp5	XR_group6:2766939-2767101 +		ACA-GCA----G-CAGCA----------------------GC---------AG------CAGCA-----------------------------ACAGAAGC---AGCAGCAGCAA---------------------------------------------------CT---GCAGCAACAGC---------------AGCAGCA-----------------------------------ACAGCA---ACAGCAGCAGCA---GCA------AC------------AGCAGCA------ACA----GCA-------G-------------C------AGCAGCAACAGC---------------A------G---CA------------GCAACTGCAGCAACAGCAA------------CAACAG---C----TACAGCCGCAGAGTCATTA-TCCG
droPer2	scaffold_0:8271589-8271724 -		AAT-GCA----G-CAGCA----------------------AC---------AG------CA--------------------------ACAGCAGC------------------AAATG---------CA---------GCAA------------------------CAGCAGCAGCAGCAGC---------------AACAGCA-----------------------------------GCAACA---ACAGCAACAACA---GCA------AC------------A-------------------ACAGCA----GCAACAACA-GCCGCAACAACA---------------------------------GCAACA---------A------------CAG---CAG------------CAACAG-------------------------CG-CTCA
droAna3	scaffold_13334:1019179-1019352 -		ACA-GC----CG-CAGCC----------------------AC---------ATCCCGGCCTGCCGCC--------AGGC----GCTC--AACAGCAATCT---------C------------------------AGCAACAGCAGCAGC---------AGCAACAACA---ACAGCAGCAGC---------------AACAGGC--------------------------------ACAACAACA---ACAGCAGCAGCA---GCA------AC------------A-------------------ACA---GGCGGCAGCAGCG-GCGGCAGCAGCA---------------------------------GCAGCA---------GCCG---------------CAG------------CAGCAG------------------------CTG-GCCA
droBip1	scf7180000396569:751679-751806 +		CAG--C----AG-CAACT----------------------CC---------A--------------C---------GG---------------------C---------CATACACAGCACCAACATCATTCCCACC---------------------AGCAG---CA---GCAGCAACAGC---------------AGCAGCA-----------------------------------GCAACA---ACAGCAGCAGCA---GCA------AC------------ACCATCA------TCAGCA-----------G-------------C------AGCAGCAA------------------------------CA------------------------C---GCTCAG---------------------------------------------CA
droKik1	scf7180000302510:447313-447473 -		ATT-GCA----A---GCA----------------------AC---------ACCC----CA--------------------------ACAGCAGCAATTA---------CAGACTC------------------AGCAACAG------------------------CA---GCAGCAGCAGC---------------AACAGCAGCCACAATTGCAAGC-----------------AACACCCCA---ACAGC---A---------GCAATTGC------------AGACGCAGCAACAG---------------------------------------C------------------------A------G---CA------------------ATCCCAG---CTGCAGCAGCAACTCAAGCC---------------CA-------AGTATCCAA
droFic1	scf7180000454045:78848-79002 -		ACA-GCA----G-GAGCA----------------------GC---------AG------GC--------------------------------------CCAGCAACAACGCCAG---------------------------------------------------CA---GCAGCAACAGC---------------AACAAGA-----------------------------------GCAACA---ACGGCAGCAGCAGCA---------GC------------A-------------------ACAACA----AGAACAGCA-AAGGC---------------------------------AGCAGCAACAGCA---------GGCG---------------CAG------------CAGCAGCAAACCCATCCAGTTAAGCATTCAGCA-TCAA
droEle1	scf7180000491000:566487-566633 +		ACC-GG-----G-CAGCT----------------------------------T------CCGCCGAC---------AGCCATC----GTT---------G---------CACCAACAG---------CA---------GCAGCAGCAGCAACAGCAACAGCAGCAGCA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAATTGCAACAGC---A---------GCAACTGC-------------------------------------------------------GC---------------------------------GGCAGCAA---CAACGCCA-----CG---------CAG---CAG------------CAGCAG------------------------------CA
droRho1	scf7180000777200:277390-277560 -		AGC-ACGCGCCG-CAGCC----------------------GC---------AT------CTGCCAAC--------GAGCCAAT------A---------T---------CATCCACAG---------CA---------GCAACAGCAA---------CAGCAGCAGCA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACT---GCAGCAGCAACAGCA---GCAACAAC------------TGCAACAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCAACAG---ATGCTGCAGATGCACCAGCGG------------------------CTG-TCCG
droBia1	scf7180000302193:851191-851357 -		ACT-GGC----T-CACCA----------------------GCAACTGTCGCAC------CA--------------------------GCAGCAG---------------CAGGCG------------------------------TTGC------------------------ACCAGCAAC---------------TGTCGCAC--------------CAACAGCAGCAGCAGCA---GCAACA---ACAGCA------------GCAACAGC------------AGCAGCAGCAACACCCGCAC--T---CGCAG-------------------------CTG----AACGGTC--------------CG---------------------------------CATCCGCAC---------------TCCCATCCGCATT-------CGCATCCGC
droTak1	scf7180000415376:173961-174114 -		GCG--C----CG-CAGCC----------------------GC---------AT------CTGCCAAC--------GAGCCAAT------A---------C---------CATCCACAG---------CA---------GCAACAGCAA------------CAG---CA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACA---CCAGCAGCAGCA---GCA------GC------------TGCAGCAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCAGCAG---ATGCTGCAGATGCACCAGCGT------------------------CTG-TCCG
droEug1	scf7180000409711:3473030-3473187 +		ACG-GCG----G-C-GCTGCA-------------------AC---------ATGC----CAACCAAC--------TGGCCACTGCGC--AACAACAATTGC---A------------A---------CA---------GCAA------------------CAG---CA---GCAGCAGCAGC---------------AGCAACA-----------------------------------GCAACA---ACAGCAGCAGCAGCA---------GC------------A-------------------ACAGCA----GCAACATCACATTGT-------------G----ATCAC--CCAGCAGC------AACAGAC---------AACG---------------CAG------------------------------------------------CA
dm3	chr3R:11239503-11239672 +		ACTCGC----CG-CCGCTGCAGACC------------------------------------GC---C---------GGCCC------ACAGCAGC------------------AACAG---------CA---------GCAA------------------CAG---CA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACA---ACAACAGCCGCCGCAGCA------AC------------AGCAGCA------TCAGAAC--A---TACAG-------------------------CCA----CAAGGGC--------------AA---AA---------CACG------CAACCA---GCGCGTCAGGTGCGCACGCG----------------------CG-ATAACCAA
droSim2	2r:17663842-17663999 -		TTT-ACGAGCTG-CAGAC----------------------GC---------GC------CTGCAGCGCAAAAAGCAGGCCAACACCC--A---------T---------CACCAG---------------------------------------------------CA---GCAGCAGCAGC---------------AGCAGCA-----------------------------------CCAACA---TCAGCAGCAGCA------------ACAACAGACCGCAGTGCAACAACAGCAG------------------------------CAGCAGCAGCAGCA---------------------------ACTGCA------------------------------------TGTGCA-----GT------------------------CTGCACAA
droSec2	scaffold_1:7474390-7474535 -		GCG--C----CG-CAGCC----------------------GC---------AT------CTGCCAAC--------GAGCCAAT------A---------T---------CATCCACAG---------CA---------GCAA------------------------CA---GCAGCAGCAGC---------------ATCAGCA-----------------------------------GCAACA---ACAGCAGCAGCA---ACA------GC------------TGCAACAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCAGCAG---ATGCTGCAGATGCACCAGCGG------------------------CTGTCCGG
droYak3	X:4451744-4451888 -		CAG--C----TG-CAGCA----------------------GC---------AG------CC---TA---------------------------TCAAAAT---------C------------------------AACAACAACAACAGC---------AGCAG---CA---ACAGCAGCAGC---------------AGCAGCA-----------------------------------GCAACA---CCACCAGCAACAGCA---GCAACAAC------------AGCAGCAGCAACAG---------------------------------------C---AG----CACG------------------GCAAAC---------AGAG---------------CAG---------CT-CACCC-------------------------GCACCCAA
droEre2	scaffold_4784:6084122-6084271 -		ATTCGCA----G-C--CC----------------------GC---------AG------CTTTTT-------------------------GCAACAATTG---------CACGCAGAG---------CG---------ACAACAGCAGC---------AACAG---CA---ACATCAGCAGC---------------AGCAACA-----------------------------------GCAACA---TCAGCAGCAGCAGCA---------TC------------A-------------------ACA---AGCAGCAA---------G---------C------------------------A------G---CGATGACAATCAACG---------------CAA---------T--TAATGC------------------------TCATCCGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

ATT-GCG----CCCAGCTGCACCTC------------------------------------GC---C--------GAGC--------ATAG------------------CA--CAAAA---------TG---------GCAACAACAA--------GCAG------CA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACA---ACAGTTGCAACA---ACA------AC------------AGCAGCAGCAACTC--------A---GCCAGCAG----------C---AG---C---AG----CTCAG--------------------------------------------CCAG---CAGCTAAAGGCGCT-CAGCAT------------------------GTATCCGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............CCAGCTGCACCTC------------------------------------GC---C--------GAGC--------ATA................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1
...............................................................................................................................................AACAA--------GCAG------CA---GCAACAGCA......................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	1

droVir3

AGC-GCA----TTCAACA----------------------GC---------AT------CA-----------------------------GCAACAAATGC---AACAGCAGCAG---------------------------------------------------CA---GCAGCAACAGC---------------AGCAACA-----------------------------------TCAACA---ACAGCAGCAGCAGCA---------AC------------A-------------------GCAGCA----GCAGCAACA-ATTGC---------------------------------AGCAGCAA---CATTGCCAGTCGCCG---------CAG---CAG------------CAGCAG-------------------------CAATCGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................CCG---------CAG---CAG------------CAGCAG-------------------------CAATCG.	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................A-----------------------------------TCAACA---ACAGCAGCAGCAGCA---------..........................................................................................................................................................................................	22	18	0.28	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................AACAGC---------------AGCAACA-----------------------------------TCAACA---ACAGCAGC..........................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGCAACA-----------------------------------TCAACA---ACAGCAGC..........................................................................................................................................................................................................	21	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AGCA----GCAGCAACA-ATTGC---------------------------------A.............................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AACA-----------------------------------TCAACA---ACAGCAGCAGCAGCA---------..........................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AGC---------------AGCAACA-----------------------------------TCAACA---ACAGC.............................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GCAACAGC---------------AGCAACA-----------------------------------TCAAC......................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ACA-----------------------------------TCAACA---ACAGCAGCAGCA......................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAACAGC---------------AGCAACA-----------------------------------TCAACA---A.................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................C---------------AGCAACA-----------------------------------TCAACA---ACAGCA............................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AAATGC---AACAGCAGCAG---------------------------------------------------CA---...............................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CAACA-----------------------------------TCAACA---ACAGCAGC..........................................................................................................................................................................................................	19	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CA-----------------------------------TCAACA---ACAGCAGCAGCAGC....................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................CA-----------------------------------TCAACA---ACAGCAGCAGCAG.....................................................................................................................................................................................................	21	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CA---------AC------------A-------------------GCAGCA----GCAGCAACA-AT..................................................................................................................................	22	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................A---------AC------------A-------------------GCAGCA----GCAGCAACA-AT..................................................................................................................................	21	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CAACA---ACAGCAGCAGCAGCA---------AC------------A-------------------GCAGC...................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CA---ACAGCAGCAGCAGCA---------AC------------A-------------------GC......................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................C---AACAGCAGCAG---------------------------------------------------CA---GCAGCAAC.......................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GC---AACAGCAGCAG---------------------------------------------------CA---GCAGCAACAGC---------------.....................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................A-----------------------------------TCAACA---ACAGCAGCAGCAGC....................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TCAACA---ACAGCAGCAGCAGCA---------..........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ACAGCAGCAGCAGCA---------AC------------A-------------------GCAGC...................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGCA---------AC------------A-------------------GCAGCA----GCAGCA........................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................A---ACAGCAGCAGCAGCA---------AC------------A-------------------GC......................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................C---AACAGCAGCAG---------------------------------------------------CA---GCAGC..........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGTGC----CG-C-GCTACAACTATCCAGAGCAGCCACACA---------AG------C-----------------------------A---------A---------CACCTGCAG---------CA---------GCAGCAG---------------------CAACAGCAGCAGCAGC---------------AGCAGCA-----------------------------------GCAGCA---ACAGCAGCAGCA---GCA------AC------------A------GCAGCAG-----------------CAG-------CAGC------AGCAGCA---------------------------ACAGCA---------GGAG---------------CAG---CAGGAGCTGGATTTT------------------------CAG---CT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................ACCTGCAG---------CA---------GCAGCAG---------------------CAACAGC.............................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................CAG-------CAGC------AGCAGCA---------------------------ACAGC..................................................................................	19	20	0.20	4	0	2	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................CAG-------CAGC------AGCAGCA---------------------------ACAGCA---------GGAG---------------C....................................................	25	14	0.07	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................CA------AC------------A------GCAGCAG-----------------CAG-------CAGC------AGCAG....................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AGCAG-----------------CAG-------CAGC------AGCAGCA---------------------------ACAGC..................................................................................	24	20	0.05	1	0	0	0	0	1	0
................................................................................................................CTGCAG---------CA---------GCAGCAG---------------------CAAC................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................CAGCA-----------------------------------GCAGCA---ACAGCAGCAGCA---GCA------..........................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GCA-----------------------------------GCAGCA---ACAGCAGCA.........................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................GCA------AC------------A------GCAGCAG-----------------CAG-------CAGC------AGCA.....................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................GCAG---------------------CAACAGCAGCAGCAGC---------------AGCAGC...............................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................GCAGCA-----------------------------------GCAGCA---ACAGCAGCAGCA---...................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droWil2

ATT-GCA----A-CAACA----------------------GCAGCAGC---A-----------------------------------------ACAACTGA---G---------AC------------------------------------------AACAACAACA---TCAACAACAGCAGCAGCACCAACTGAGACAACA-----------------------------------ACAACA---TGAACAACAACAACA---------TC------------A-------------------ACAGCA----ACAGCAACA-AAAGC---------------------------------AGCAGCAA---------------------CATCAACAA---CAGCAACAGCATTCTCAGCAA------------------------CTGCTCGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................A----ACAGCAACA-AAAGC---------------------------------AGCAGCA.......................................................................................	22	3	0.33	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................AGCAACA-AAAGC---------------------------------AGCAGC........................................................................................	18	6	0.33	2	0	1	0	1	0
..............................................................................................................................................................................................................................................................................................A-------------------ACAGCA----ACAGCAACA-AAAGC---------------------------------A.............................................................................................	22	3	0.33	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................A-------------------ACAGCA----ACAGCAACA-AAAGC---------------------------------..............................................................................................	21	4	0.25	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................AGCAACA-AAAGC---------------------------------AGCAGCA.......................................................................................	19	5	0.20	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................AA---------------------CATCAACAA---CAGCAACAGC...........................................	21	6	0.17	1	0	0	0	1	0
.............................................................................................................................................................................AACAACAGCAGCAGCACCA..........................................................................................................................................................................................................................................................................	19	13	0.15	2	0	0	0	2	0
............................................................................................................................................................................CAACAACAGCAGCAGCACC...........................................................................................................................................................................................................................................................................	19	14	0.14	2	0	0	0	2	0
....................................................................................................................................................................AACA---TCAACAACAGCAGCAGCA.............................................................................................................................................................................................................................................................................	22	14	0.14	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................AACAACAACA---------TC------------A-------------------ACAGCA----..............................................................................................................................................	19	20	0.10	2	0	0	0	2	0
....GCA----A-CAACA----------------------GCAGCAGC---A-----------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................ACAACAACA---------TC------------A-------------------ACAGCA----ACA...........................................................................................................................................	21	12	0.08	1	0	0	0	1	0
.....CA----A-CAACA----------------------GCAGCAGC---A-----------------------------------------ACA..........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AA---------------------CATCAACAA---CAGCAACA.............................................	19	20	0.05	1	0	0	0	1	0

dp5

ACA-GCA----G-CAGCA----------------------GC---------AG------CAGCA-----------------------------ACAGAAGC---AGCAGCAGCAA---------------------------------------------------CT---GCAGCAACAGC---------------AGCAGCA-----------------------------------ACAGCA---ACAGCAGCAGCA---GCA------AC------------AGCAGCA------ACA----GCA-------G-------------C------AGCAGCAACAGC---------------A------G---CA------------GCAACTGCAGCAACAGCAA------------CAACAG---C----TACAGCCGCAGAGTCATTA-TCCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................AACAGC---------------AGCAGCA-----------------------------------ACAGCA---..................................................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	5	0	0	0	0	0
.................................................................................................................................................................................................................................................AGCA---ACAGCAGCAGCA---GCA------..........................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GCAGCAACAGC---------------AGCAGCA-----------------------------------AC.........................................................................................................................................................................................................................	20	20	0.15	3	0	0	3	0	0	0	0	0	0	0
ACA-GCA----G-CAGCA----------------------GC---------AG------CAGCA-----------------------------.............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................CA------ACA----GCA-------G-------------C------AGCAGCAACA...............................................................................................................	20	20	0.10	2	0	0	0	0	2	0	0	0	0	0
...........................................................................................................................................................................GCAGCAACAGC---------------AGCAGCA-----------------------------------ACAGCA---AC................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................AGCAACAGC---------------AGCAGCA-----------------------------------ACAGCA---ACAGC.............................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGCA-----------------------------------ACAGCA---ACAGCAGCAGCA---GC.................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAACAGC---------------AGCAGCA-----------------------------------ACAGCA---AC................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CA---ACAGCAGCAGCA---GCA------AC------------AG..........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGCAGCA-----------------------------------ACAGCA---ACAGCAGC..........................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCA-----------------------------------ACAGCA---ACAGCAGCAGCA---GCA------..........................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CAGCA------ACA----GCA-------G-------------C------AGCAGCAAC................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CAGCAGCAGCA---GCA------AC------------AGC.........................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAGCA---GCA------AC------------AGCAGCA------ACA----GCA-------..............................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CA---ACAGCAGCAGCA---GCA------AC------------AGC.........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ACAGCAGCAGCA---GCA------AC------------AGCAGC......................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGCA-----------------------------------ACAGCA---ACAGCAGCAGC.......................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGCAGCAGCA---GCA------AC------------AGCAGC......................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGCA-----------------------------------ACAGCA---ACAGCA............................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GCAGCA---GCA------AC------------AGCAGCA------AC.............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ACA----GCA-------G-------------C------AGCAGCAACAGC---------------A------G---C..................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GCAGCA---GCA------AC------------AGCAGCA------ACA----GC......................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAACAGC---------------AGCAGCA-----------------------------------ACAGC......................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GCA---ACAGCAGCAGCA---GCA------AC------------AG..........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GCA---ACAGCAGCAGCA---GCA------AC------------AGCA........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................AGCAGCA---GCA------AC------------AGCAGCA------ACA----GCA-------G-------------C------A........................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................A----GCA-------G-------------C------AGCAGCAACAGC---------------A------G---C..................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAGCA---GCA------AC------------AGCAGCA------ACA----........................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................CA-----------------------------------ACAGCA---ACAGCAGCAGCA---...................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCAGCA------ACA----GCA-------G-------------C------AGCAGCAACAGC---------------A------.......................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................CA----GCA-------G-------------C------AGCAGCAACAGC---------------..............................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................GCAGCA-----------------------------------ACAGCA---ACAGCAGCAGCA---GCA------..........................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CA------ACA----GCA-------G-------------C------AGCAGCAACAGC---------------..............................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAGCAACAGC---------------AGCAGCA-----------------------------------ACA........................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGCAGCA-----------------------------------ACAGCA---ACAGCAGCAGCA---GC.................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

AAT-GCA----G-CAGCA----------------------AC---------AG------CA--------------------------ACAGCAGC------------------AAATG---------CA---------GCAA------------------------CAGCAGCAGCAGCAGC---------------AACAGCA-----------------------------------GCAACA---ACAGCAACAACA---GCA------AC------------A-------------------ACAGCA----GCAACAACA-GCCGCAACAACA---------------------------------GCAACA---------A------------CAG---CAG------------CAACAG-------------------------CG-CTCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................AACAACA---------------------------------GCAACA---------A------------CAG---CAG------------CAACAG-------------------------.......	26	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AACA---------------------------------GCAACA---------A------------CAG---CAG------------CAACAG-------------------------.......	23	9	0.11	1	0	1	0	0	0	0
..........................................................................................................................................................................................................CA-----------------------------------GCAACA---ACAGCAACAACA---GC.................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..T-GCA----G-CAGCA----------------------AC---------AG------CA--------------------------ACA................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
............................................................................................................................................AA------------------------CAGCAGCAGCAGCAGC---------------A....................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AACA---------------------------------GCAACA---------A------------CAG---CAG------------CAAC..................................	21	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................AACA---GCA------AC------------A-------------------ACAGCA----GCAAC.........................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

ACA-GC----CG-CAGCC----------------------AC---------ATCCCGGCCTGCCGCC--------AGGC----GCTC--AACAGCAATCT---------C------------------------AGCAACAGCAGCAGC---------AGCAACAACA---ACAGCAGCAGC---------------AACAGGC--------------------------------ACAACAACA---ACAGCAGCAGCA---GCA------AC------------A-------------------ACA---GGCGGCAGCAGCG-GCGGCAGCAGCA---------------------------------GCAGCA---------GCCG---------------CAG------------CAGCAG------------------------CTG-GCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................A---ACAGCAGCAGC---------------AACAGGC--------------------------------ACAACAAC......................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................CT---------C------------------------AGCAACAGCAGCAGC---------AGC.........................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GGCAGCAGCG-GCGGCAGCAGCA---------------------------------.......................................................................................	22	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................AACAGCAGCAGC---------AGCAACA.....................................................................................................................................................................................................................................................................................................	19	20	0.45	9	0	0	0	0	0	9
.........................................................................................................................................................................................................GGC--------------------------------ACAACAACA---ACAGCC............................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0
.........................................................................................................................................AACAGCAGCAGC---------AGCAACAACA---A..............................................................................................................................................................................................................................................................................................	23	20	0.20	4	3	0	0	0	0	1
.........................................................................................................................................AACAGCAGCAGC---------AGCAACAAC...................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	3
................................................................................................................................................................................................................................................CAACA---ACAGCAGCAGCA---GCA------..........................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	3
......................................................................................................................................AGCAACAGCAGCAGC---------AGCAAC......................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	1
...............................................................................................................................................................................................................................................................................................................................GCAGCG-GCGGCAGCAGCA---------------------------------GC.....................................................................................	20	14	0.07	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GCAGCAGCG-GCGGCAGCAGC.........................................................................................................................	20	18	0.06	1	1	0	0	0	0	0
...................................................................................................................................................GC---------AGCAACAACA---ACAGCAGCAGC---------------AAC..................................................................................................................................................................................................................................................................	26	19	0.05	1	0	1	0	0	0	0
..........................................................................................................................................ACAGCAGCAGC---------AGCAACAACA---ACA............................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................ACAGCAGCAGCA---GCA------AC------------A-------------------AC......................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................ACAACA---ACAGCAGCAGCA---GCA------AC------------A-------------------........................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................GCAACAGCAGCAGC---------AGCAACAAC...................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................AGCAGC---------AGCAACAACA---ACAGCAGCAGC---------------.....................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................AGC---------AGCAACAACA---ACAGCAGCAGC---------------.....................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAGCAGCG-GCGGCAGCAG..........................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................CAACAACA---ACAGCAGCAGCA---GCA------AC------------............................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................AACAACA---ACAGCAGCAGCA---GCA------AC------------............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................GC---------AGCAACAACA---ACAGCAGCAGC---------------.....................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................ACA---ACAGCAGCAGC---------------AACAG................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

droBip1

CAG--C----AG-CAACT----------------------CC---------A--------------C---------GG---------------------C---------CATACACAGCACCAACATCATTCCCACC---------------------AGCAG---CA---GCAGCAACAGC---------------AGCAGCA-----------------------------------GCAACA---ACAGCAGCAGCA---GCA------AC------------ACCATCA------TCAGCA-----------G-------------C------AGCAGCAA------------------------------CA------------------------C---GCTCAG---------------------------------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATT-GCA----A---GCA----------------------AC---------ACCC----CA--------------------------ACAGCAGCAATTA---------CAGACTC------------------AGCAACAG------------------------CA---GCAGCAGCAGC---------------AACAGCAGCCACAATTGCAAGC-----------------AACACCCCA---ACAGC---A---------GCAATTGC------------AGACGCAGCAACAG---------------------------------------C------------------------A------G---CA------------------ATCCCAG---CTGCAGCAGCAACTCAAGCC---------------CA-------AGTATCCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACA-GCA----G-GAGCA----------------------GC---------AG------GC--------------------------------------CCAGCAACAACGCCAG---------------------------------------------------CA---GCAGCAACAGC---------------AACAAGA-----------------------------------GCAACA---ACGGCAGCAGCAGCA---------GC------------A-------------------ACAACA----AGAACAGCA-AAGGC---------------------------------AGCAGCAACAGCA---------GGCG---------------CAG------------CAGCAGCAAACCCATCCAGTTAAGCATTCAGCA-TCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACC-GG-----G-CAGCT----------------------------------T------CCGCCGAC---------AGCCATC----GTT---------G---------CACCAACAG---------CA---------GCAGCAGCAGCAACAGCAACAGCAGCAGCA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAATTGCAACAGC---A---------GCAACTGC-------------------------------------------------------GC---------------------------------GGCAGCAA---CAACGCCA-----CG---------CAG---CAG------------CAGCAG------------------------------CA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGC-ACGCGCCG-CAGCC----------------------GC---------AT------CTGCCAAC--------GAGCCAAT------A---------T---------CATCCACAG---------CA---------GCAACAGCAA---------CAGCAGCAGCA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACT---GCAGCAGCAACAGCA---GCAACAAC------------TGCAACAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCAACAG---ATGCTGCAGATGCACCAGCGG------------------------CTG-TCCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACT-GGC----T-CACCA----------------------GCAACTGTCGCAC------CA--------------------------GCAGCAG---------------CAGGCG------------------------------TTGC------------------------ACCAGCAAC---------------TGTCGCAC--------------CAACAGCAGCAGCAGCA---GCAACA---ACAGCA------------GCAACAGC------------AGCAGCAGCAACACCCGCAC--T---CGCAG-------------------------CTG----AACGGTC--------------CG---------------------------------CATCCGCAC---------------TCCCATCCGCATT-------CGCATCCGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCG--C----CG-CAGCC----------------------GC---------AT------CTGCCAAC--------GAGCCAAT------A---------C---------CATCCACAG---------CA---------GCAACAGCAA------------CAG---CA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACA---CCAGCAGCAGCA---GCA------GC------------TGCAGCAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCAGCAG---ATGCTGCAGATGCACCAGCGT------------------------CTG-TCCG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACG-GCG----G-C-GCTGCA-------------------AC---------ATGC----CAACCAAC--------TGGCCACTGCGC--AACAACAATTGC---A------------A---------CA---------GCAA------------------CAG---CA---GCAGCAGCAGC---------------AGCAACA-----------------------------------GCAACA---ACAGCAGCAGCAGCA---------GC------------A-------------------ACAGCA----GCAACATCACATTGT-------------G----ATCAC--CCAGCAGC------AACAGAC---------AACG---------------CAG------------------------------------------------CA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACTCGC----CG-CCGCTGCAGACC------------------------------------GC---C---------GGCCC------ACAGCAGC------------------AACAG---------CA---------GCAA------------------CAG---CA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCAACA---ACAACAGCCGCCGCAGCA------AC------------AGCAGCA------TCAGAAC--A---TACAG-------------------------CCA----CAAGGGC--------------AA---AA---------CACG------CAACCA---GCGCGTCAGGTGCGCACGCG----------------------CG-ATAACCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................AAGGGC--------------AA---AA---------CACG------CAACCA---GCGCGTC..............................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TCAGAAC--A---TACAG-------------------------CCA----CAAGGGC--------------AA---AA---------........................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TACAG-------------------------CCA----CAAGGGC--------------AA---AA---------CACG------CAAC..........................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TACAG-------------------------CCA----CAAGGGC--------------AA---AA---------CACG------CAACC.........................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAAGGGC--------------AA---AA---------CACG------CAACCA---GCGCG................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................A---------CACG------CAACCA---GCGCGTCA.............................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................AA------------------CAG---CA---GCAACAGCAGC---------------AGC..................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGCAGC------------------AACAG---------CA---------GCAA------------------CAG---CA---GCA............................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAACAGCAGC---------------AGCAGCA-----------------------------------GCAACA---AC................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................AG---CA---GCAACAGCAGC---------------AGCAGCA-----------------------------------GCA........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CAG---CA---GCAACAGCAGC---------------AGCAG................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................C---------------AGCAGCA-----------------------------------GCAACA---ACAACAGC..........................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CAGC---------------AGCAGCA-----------------------------------GCAACA---ACAACA............................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CA---GCAACAGCAGC---------------AGCAGC...............................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTT-ACGAGCTG-CAGAC----------------------GC---------GC------CTGCAGCGCAAAAAGCAGGCCAACACCC--A---------T---------CACCAG---------------------------------------------------CA---GCAGCAGCAGC---------------AGCAGCA-----------------------------------CCAACA---TCAGCAGCAGCA------------ACAACAGACCGCAGTGCAACAACAGCAG------------------------------CAGCAGCAGCAGCA---------------------------ACTGCA------------------------------------TGTGCA-----GT------------------------CTGCACAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....ACGAGCTG-CAGAC----------------------GC---------GC------C..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ACA---TCAGCAGCAGCA------------ACAAC.....................................................................................................................................................................................	20	5	0.80	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCAACAACAGCAG------------------------------CAGCAG..........................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CAG------------------------------CAGCAGCAGCAGCA---------------------------ACTG...................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCG--C----CG-CAGCC----------------------GC---------AT------CTGCCAAC--------GAGCCAAT------A---------T---------CATCCACAG---------CA---------GCAA------------------------CA---GCAGCAGCAGC---------------ATCAGCA-----------------------------------GCAACA---ACAGCAGCAGCA---ACA------GC------------TGCAACAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCAGCAG---ATGCTGCAGATGCACCAGCGG------------------------CTGTCCGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................TGCAACAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCA............................................................	22	6	0.17	1	0	0	1	0
................................................................................................................CCACAG---------CA---------GCAA------------------------CA---GCAGCAGCA......................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	1
......................................................................................................................................................................CA---GCAGCAGCAGC---------------ATCAGCA-----------------------------------...........................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................ACAGCAACTG---------------------------------------C------------------------A------G---------------------CAGCA............................................................	18	20	0.05	1	0	0	1	0

droYak3

CAG--C----TG-CAGCA----------------------GC---------AG------CC---TA---------------------------TCAAAAT---------C------------------------AACAACAACAACAGC---------AGCAG---CA---ACAGCAGCAGC---------------AGCAGCA-----------------------------------GCAACA---CCACCAGCAACAGCA---GCAACAAC------------AGCAGCAGCAACAG---------------------------------------C---AG----CACG------------------GCAAAC---------AGAG---------------CAG---------CT-CACCC-------------------------GCACCCAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................ACAACAACAACAGC---------AGCAG---CA---ACAGCA.........................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCAG---CA---ACAGCAGCAGC---------------AGCAG................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCAG---CA---ACAGCAGCAGC---------------AGCAGCA-----------------------------------...........................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GCA---GCAACAAC------------AGCAGCAGCAACAG---------------------------------------C---AG----C............................................................................................................	29	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CAACAAC------------AGCAGCAGCAACAG---------------------------------------C---AG----.............................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GCA---GCAACAAC------------AGCAGCAGCAACAG---------------------------------------.......................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AACAAC------------AGCAGCAGCAACAG---------------------------------------C---...................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................AACAACAGC---------AGCAG---CA---ACAGC..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................CAACAACAGC---------AGCAG---CA---ACAGCAG........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGCA---GCAACAAC------------AGCAGCAGCAACAG---------------------------------------C---...................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................GC---------AGCAG---CA---ACAGCAGCAGC---------------AGCAG................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCAG---CA---ACAGCAGCAGC---------------A....................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................AACAACAACAACAGC---------AGCAG---CA---AC.............................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................AACAGCA---GCAACAAC------------AGCAGCAGC...................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CA---GCAACAAC------------AGCAGCAGCAACAG---------------------------------------C---...................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

ATTCGCA----G-C--CC----------------------GC---------AG------CTTTTT-------------------------GCAACAATTG---------CACGCAGAG---------CG---------ACAACAGCAGC---------AACAG---CA---ACATCAGCAGC---------------AGCAACA-----------------------------------GCAACA---TCAGCAGCAGCAGCA---------TC------------A-------------------ACA---AGCAGCAA---------G---------C------------------------A------G---CGATGACAATCAACG---------------CAA---------T--TAATGC------------------------TCATCCGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................AG---CA---ACATCAGCAGC---------------AGCAACA-----------------------------------GC.........................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	1	0
................................................................................................................................................................CAG---CA---ACATCAGCAGC---------------AGCA.................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................CA-----------------------------------GCAACA---TCAGCAGCAGCA......................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................CA-----------------------------------GCAACA---TCAGCAGCAGCAG.....................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
............................................................................................................................................................................CATCAGCAGC---------------AGCAACA-----------------------------------G..........................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0

dgr_89

scaffold_14624:1477463-1477525 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads