dgr_69

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGACTTTGACTACGAGCCCTTCTACAAGGAGTTCATAACTCTGTCCAGAGGTAGGAGATCACTTTCAGATTGGGTGTAGCATTTATATTATATATATATTTTTGTGGAATCTGTTCCCCTGGTTGGCGTTGAGTTGTAGCCAAAAAGGTTTTAAGATTTCGCACAGTAAACTGGGCAAATGTTCACTCGCATCCAACTCGAGTTGTTGTCGAATGTGCTTTTGGATTTGCCCACAACTTTAATCAAAGAAA ***************************************************************************************************.((((((((((.....(((..(((((...........)))))..))).....))))))))))(((....)))((...((((......)))))).******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
...........................................................................................................................................................................TGGGCAAATGTTCACTCGCATCCA........................................................	24	0	1	3.00	3	3	0
....................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCCA..................	21	0	1	2.00	2	1	1
....................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCCACA................	23	0	1	2.00	2	1	1
....................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCC...................	20	0	1	1.00	1	0	1
......................................................................................................................................................................................................................GTGCTTTTGGATTTGCCCACAA...............	22	0	1	1.00	1	0	1
.....................................................................................................................................................................................................................TGTGCTTTTGGATTTGCCCACA................	22	0	1	1.00	1	0	1
...........................................................................................................................................................................TGGGCAAATGTTCACTCGCATCC.........................................................	23	0	1	1.00	1	1	0
.....................................................................................................TTGTGGAATCTGTTCCCCTGGTT...............................................................................................................................	23	0	1	1.00	1	1	0
.....................................................................................................................................................................................................................TGTGCTTTTGGATTTGCCCA..................	20	0	1	1.00	1	0	1
....................................................................................................................................................................................................................ATGTGCTTTTGGATTCGCCCA..................	21	1	1	1.00	1	0	1
....................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCCACAA...............	24	0	1	1.00	1	1	0
.........................................................................................................................................................................................................................CTTTTGGATTTGCCCACAACT.............	21	0	1	1.00	1	1	0
.......................................................................................................................................................................................................................TGCTTTTGGATTTGCCCACAA...............	21	0	1	1.00	1	0	1
..........................................GTCGAGAGGTACGGGATC...............................................................................................................................................................................................	18	3	10	0.10	1	1	0

Species	Coordinate	ID	Alignment
droGri2	scaffold_14906:8017203-8017367 -	dgr_69	GTTGGCGTTGAGTTGTAGCCAAA-AAGGTTTTAAGATTTCGCACAGTAAACT----G-GGCAA-ATGTTCACTCGCATCCAACTCGAGTTGTTGTCGAATGTGCTTTTGGATTTGCCCACAACTTTAATCAAAGAAAGCCCAGTGAGAACGTTGCAGTCGGGCGTAACCGAC
droVir3	scaffold_12855:6043488-6043602 +		GCTGGCGTGCAGTTGTAGCCAAA-AAGGTTTTAAGATCTCGCAGAGCAAACT----AAGCAAA-TGTTTCACTCGCAACCAATCGCAGTTGTATTGGGCTGCGCTTTTGTATTTGCTGACA---------------------------------------------------
droMoj3	scaffold_6540:6362679-6362794 +		GCTGGCGTGCAGCTGTAGCCAGA-AAGGTTTCAAGATGTCGCAGAGCAAACA----G-AGCAACTGTTTCACCCGCATCCAACTGAAGTACTATTGGGTTGCGCTTTTGAATTTGCTCACAA--------------------------------------------------
droWil2	scf2_1100000004902:4246533-4246657 +		GCTGGCGTGCAGTGATAGCCTTC-AAGGTTTTAAGGTTTCGCAAATCAAATGTACAG-AGCAA-AAATTCACCCGCCTCCAAGTGAAGCACTATTGGTCAGCGGTTTTGATTTTGCTTACAGTTTA---------AA-----------------------------------
dp5	2:29182207-29182321 +		CGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---A-GCAAA-TCATTCACCTGCGTCCAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA---------------------------------------------------
droPer2	scaffold_6:4506188-4506302 +		CGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---A-GCAAA-TCATTCACCTGCGTCAAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA---------------------------------------------------
droAna3	scaffold_13340:10595267-10595383 -		GCTTACTTTAAA-CTTGGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----G-AGCCA-TCATTCACCCGCATCCAAGTGAAGACATATTGGATCATGGTTTTAGATGGGCTTACAGTTT-----------------------------------------------
droBip1	scf7180000396374:479601-479714 +		GCTTGCTTCGA-AGTTAGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----G-AGCCA-TCATTCACCCGTATCCAAGTGAAGACTTATTGGATCATGGTTTTAGATGGGCTTACAA--------------------------------------------------
droKik1	scf7180000302475:376752-376866 -		GTTGGTGTTCAAGTCTCGCCGGA-GAGGTTTTAAGACTTCGCAGATCAAACAT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGTCCAATTAGCTTGTGGTTTTGGATTGGCTTACA---------------------------------------------------
droFic1	scf7180000453488:617445-617564 -		GTTGGCGTTTTATTTTCGTCGGT-AAGGTTTTAAGACTTCGCAGATTAACCTT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCCCAATTGGTTTGTGGTTTTGGATTGGCTTACAAATCT----------------------------------------------
droEle1	scf7180000491080:2467143-2467274 -		GTTGGCGTTTAAATTTGGCCTTT-GAGGTTTTAAGACTTCGCAGATCAATCAT---G-TGCAA-TCATTCACCCGCGTCCAAGTGAAGCCCAATTGGCTCGTGGTTTTGGATTGGCTTACAAGCC--ATTAAATAAAGCC--------------------------------
droRho1	scf7180000779097:84517-84632 -		GTAGGCGTTTAAGTTTCGCCTTG-GAGGTTTTAAGACTTCGCAGATCAATCAT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGTCCAATTGGTTCGTGGTTTTGGATTGGCTTACAA--------------------------------------------------
droBia1	scf7180000302075:3526869-3526993 -		CTTGGCGTTGAGTTTTCGCTTGG-GCGGTTTTAAGACTTCGCAGATCAAACAA---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCCCAATGGGTTCGTGGTTTTGGATTGGCTTACAAGTATAACTA-----------------------------------------
droTak1	scf7180000415763:204715-204836 -		GCTGGCGTTGAATTTTCGCCTGG-GAGGTTTAAAGACTTCGCAGATGAAATAT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTGCGTGGTTTTGGATTGGCTTACAATACTAA--------------------------------------------
droEug1	scf7180000409797:860829-860944 +		ATTGGCATTAAATTTTTGTCTAG-GAGGTTTTAAGACTTTGCAGATTAAACAT---A-AGCAA-TCATTCACCCGCGACCAAGTGAAGTCTATTTGGTTCGTGGTTTTGGATTGGCTTACAA--------------------------------------------------
dm3	chr3R:7236596-7236726 +		TTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGTAGATCAAATAT---A-AGCAA-TCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGAATAATAAAATAAA-----------------------------------
droSim2	3r:13865019-13865149 -		TTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGCAGATCAAATAT---G-AGCAA-TCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGAATAATAAAATAAA-----------------------------------
droSec2	scaffold_0:14727225-14727356 -		TTTGGCGTTCAATTTTCGCCTAAAAAGGTTTTAAGACTTCGCAGATGAAATAT---G-AGCAA-TCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGAATAATAAAATAAA-----------------------------------
droYak3	3R:11269436-11269551 +		GTTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGATTTCGCAGATCAAATAT---A-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCACAATTGGTTCGTGGTTTTGGATTGGCTTACAA--------------------------------------------------
droEre2	scaffold_4770:14386239-14386354 -		ATTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGACTCCGCAGAACAATTAT---A-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTTGCTTACAA--------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GTTGGCGTTGAGTTGTAGCCAAA-AAGGTTTTAAGATTTCGCACAGTAAACT----G-GGCAA-ATGTTCACTCGCATCCAACTCGAGTTGTTGTCGAATGTGCTTTTGGATTTGCCCACAACTTTAATCAAAGAAAGCCCAGTGAGAACGTTGCAGTCGGGCGTAACCGAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................T----G-GGCAA-ATGTTCACTCGCATCCA...........................................................................................	24	1	3.00	3	3	0
..................................................................................................ATGTGCTTTTGGATTTGCCCA.....................................................	21	1	2.00	2	1	1
..................................................................................................ATGTGCTTTTGGATTTGCCCACA...................................................	23	1	2.00	2	1	1
..................................................................................................ATGTGCTTTTGGATTTGCCC......................................................	20	1	1.00	1	0	1
....................................................................................................GTGCTTTTGGATTTGCCCACAA..................................................	22	1	1.00	1	0	1
...................................................................................................TGTGCTTTTGGATTTGCCCACA...................................................	22	1	1.00	1	0	1
.......................................................................................................CTTTTGGATTTGCCCACAACT................................................	21	1	1.00	1	1	0
...................................................T----G-GGCAA-ATGTTCACTCGCATCC............................................................................................	23	1	1.00	1	1	0
.....................................................................................................TGCTTTTGGATTTGCCCACAA..................................................	21	1	1.00	1	0	1
...................................................................................................TGTGCTTTTGGATTTGCCCA.....................................................	20	1	1.00	1	0	1
..................................................................................................ATGTGCTTTTGGATTTGCCCACAA..................................................	24	1	1.00	1	1	0

droVir3

GCTGGCGTGCAGTTGTAGCCAAA-AAGGTTTTAAGATCTCGCAGAGCAAACT----AAGCAAA-TGTTTCACTCGCAACCAATCGCAGTTGTATTGGGCTGCGCTTTTGTATTTGCTGACA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................CTCGCAGAGCAAACT----AAGCAAA-TGT.........................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................TCTCGCAGAGCAAACT----AAGCAAA-TG..........................................................................................................	25	1	5.00	5	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................CTCGCAGAGCAAACT----AAGCAAA-T...........................................................................................................	23	1	5.00	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................TCTCGCAGAGCAAACT----AAGCAAA-T...........................................................................................................	24	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CTCGCAGAGCAAACT----AAGCAAA-TGTT........................................................................................................	26	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CTCGCAGAGCAAACT----AAGCAAA-TG..........................................................................................................	24	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TCGCAGAGCAAACT----AAGCAAA-TG..........................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TTTCACTCGCAACCAATC........................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.....................................CTCGCAGAGCAAACT----AAGCAAA-TGTTTC......................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................TCGCAGAGCAAACT----AAGCAAA-TGTTT.......................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TCGCAGAGCAAACT----AAGCAAA-TGT.........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TCGCAACCAATCGCAGTTGTATTGGGC.........................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................GTATTGGGCTGCGCTTTTGTATT...........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CTCGCAGAGCAAACT----AAGCAAA-TGTTT.......................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................GATCTCGCAGAGCAAACT----AAGCAAA-TG..........................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AATCGCAGTTGTATTGGGC.........................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TCGCAGAGCAAACT----AAGCAAA-TGTTTC......................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTGGGCTGCGCTTTTGTATTTG.........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................CACTCGCAACCAATCGCAGTTGTATT.............................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AGTTGTATTGGGCTGCGCTTTTGTATT...........................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................GCAAA-TGTTTCACTCGCAACC............................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATCTCGCAGAGCAAACT----AAGCAAA-T...........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGCAGAGCAAACT----AAGCAAA-TG..........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................GTATTGGGCTGCGCTTTTGTAT............................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTGGCGTGCAGTTGTAGCC........................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGGTTTTAAGATCTCGCAGAGCAAACT----....................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TCGCAGAGCAAACT----AAGCAAA-TGTTTCA.....................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TCGCAGTTGTATTGGGCTG.......................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
GCTGGCGTGCAGTTGTAGC.........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

GCTGGCGTGCAGCTGTAGCCAGA-AAGGTTTCAAGATGTCGCAGAGCAAACA----G-AGCAACTGTTTCACCCGCATCCAACTGAAGTACTATTGGGTTGCGCTTTTGAATTTGCTCACAA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................GTCGCAGAGCAAACA----G-AGCAACTGT.........................................................................................................	25	1	19.00	19	3	0	0	0	1	15
.....................................GTCGCAGAGCAAACA----G-AGCAACTGTTT.......................................................................................................	27	1	15.00	15	8	0	0	0	0	7
.....................................GTCGCAGAGCAAACA----G-AGCAACTG..........................................................................................................	24	1	9.00	9	3	0	0	0	0	6
....................................TGTCGCAGAGCAAACA----G-AGCAACTGTTT.......................................................................................................	28	1	5.00	5	1	0	0	0	0	4
.....................................GTCGCAGAGCAAACA----G-AGCAACTGTT........................................................................................................	26	1	4.00	4	2	0	0	0	0	2
....................................TGTCGCAGAGCAAACA----G-AGCAACTGTTTC......................................................................................................	29	1	3.00	3	1	0	0	0	0	2
.....................................GTCGCAGAGCAAACA----G-AGC...............................................................................................................	19	1	2.00	2	1	0	0	0	0	1
.....................................GTCGCAGAGCAAACA----G-AGCAACT...........................................................................................................	23	1	2.00	2	1	0	0	0	0	1
....................................TGTCGCAGAGCAAACA----G-AGCAACTG..........................................................................................................	25	1	2.00	2	0	0	0	1	0	1
..............................................................ACTGTTTCACCCGCATCCAAC.........................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................AGA-AAGGTTTCAAGATGT.....................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................TGAAGTACTATTGGGTTG.......................................................................	18	1	1.00	1	0	1	0	0	0	0
...........................GTTTCAAGATGTCGCAGAGCAAACA----G-AG................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.....................................GTCGCAGAGCAAACA----G-AGCAACTGTTTC......................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................CAAGATGTCGCAGAGCAAACA----....................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................GTTTCAAGATGTCGCAGAGC.............................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................GCAGAGCAAACA----G-AGCAACTGTTT.......................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..........................................................................................CTATTGGGTTGCGCTTTTGAATTTGCTC......................................................	28	1	1.00	1	1	0	0	0	0	0
......................A-AAGGTTTCAAGATGTCGCAGAGC.............................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
........GCAGCTGTAGCCAGA-AAGGTTTCAA..........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................TACTATTGGGTTGCGCTTTTGAATTTGCT.......................................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................TATTGGGTTGCGCTTTTGAATT...........................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................AACTGAAGTACTATTGGGT.........................................................................	19	1	1.00	1	0	0	0	0	0	1
......................................TCGCAGAGCAAACA----G-AGCAACTGTTT.......................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................TACTATTGGGTTGCGCTTTTGAATTTGC........................................................	28	1	1.00	1	1	0	0	0	0	0
.....................................GTCGCAGAGCAAACA----G-AGCA..............................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................................TCGCAGAGCAAACA----G-AGCAACTG..........................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................AAGGTTTCAAGATGTCGCAGAGC.............................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................TCGCAGAGCAAACA----G-AGCAACTGTT........................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................GTACTATTGGGTTGCGCTTTTGA..............................................................	23	1	1.00	1	0	0	0	0	0	1
....................................TGTCGCAGAGCAAACA----G-AGC...............................................................................................................	20	1	1.00	1	0	0	0	0	0	1
GCTGGCGTGCAGCTGTAGCC........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................AGATGTCGCAGAGCAAACA----G-AGCAACTG..........................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droWil2

GCTGGCGTGCAGTGATAGCCTTC-AAGGTTTTAAGGTTTCGCAAATCAAATGTACAG-AGCAA-AAATTCACCCGCCTCCAAGTGAAGCACTATTGGTCAGCGGTTTTGATTTTGCTTACAGTTTA---------AA-----------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................TTCGCAAATCAAATGTACAG-AGC...............................................................................................................	23	1	1.00	1	0	0	1	0	0
.....................................TTCGCAAATCAAATGTACAG-AGCAA-A...........................................................................................................	26	1	1.00	1	0	0	0	0	1
....................................................................................................GCGGTTTTGATTTTGCTTACAGTT................................................	24	1	1.00	1	1	0	0	0	0
...................................................GTACAG-AGCAA-AAATTCACCCGCCTC.............................................................................................	26	1	1.00	1	0	1	0	0	0
..................................................................................GTGAAGCACTATTGGTCAGCGGTTTTGA..............................................................	28	1	1.00	1	0	0	1	0	0
............................................................................................ATTGGTCAGCGGTTTTGAT.............................................................	19	1	1.00	1	0	0	0	0	1
..................................................................................................CAGCGGTTTTGATTTTGCTTACAGTT................................................	26	1	1.00	1	0	0	0	0	1
........................................................................................................TTTTGATTTTGCTTACAGTTT...............................................	21	1	1.00	1	0	1	0	0	0
...................................................................................................AGCGGTTTTGATTTTGCTTACAGTT................................................	25	1	1.00	1	0	0	0	0	1
................................................................................................GTCAGCGGTTTTGATTTTGCTTACA...................................................	25	1	1.00	1	0	0	0	0	1
........................................................G-AGCAA-AAATTCACCCGCCTC.............................................................................................	21	1	1.00	1	0	1	0	0	0
.....................................TTCGCAAATCAAATGTACAG-AGCAA-AAA.........................................................................................................	28	1	1.00	1	0	1	0	0	0

dp5

CGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---A-GCAAA-TCATTCACCTGCGTCCAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................CTTCGCAGAGCAACTGT---A-GCAAA-TC..........................................................................................................	25	1	4.00	4	0	2	0	0	0	0	0	0	2	0
....................................CTTCGCAGAGCAACTGT---A-GCAAA-TCA.........................................................................................................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....................................TTCGCAGAGCAACTGT---A-GCAAA-TC..........................................................................................................	24	1	3.00	3	0	2	1	0	0	0	0	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GCAAA-TCATT.......................................................................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...................................................................................................TGTGGTTTTGGGTCTGCTCAC....................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GCAAA-T...........................................................................................................	24	1	2.00	2	0	1	0	0	0	0	0	0	1	0
...........GAGATCGCCTTG-GAGGTTT.............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GCAAA-TCAC........................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................GT---A-GCAAA-TCATTCACCTGCGTC.............................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................TGT---A-GCAAA-TCATTCACCTGCGTC.............................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....GCGTCCAGAGATCGCCTTG-GAGGTT..............................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................A-TCATTCACCTGCGTCCAAGT........................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GCAA..............................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................TCGCAGAGCAACTGT---A-GCAAA-TCATT.......................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................TGTGGTTTTGGGTCTGCTCACA---------------------------------------------------	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................T---A-GCAAA-TCATTCACCTGCGTC.............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................GTACTTCGCAGAGCAACTGT---A-..................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GC................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGTGGTTTTGGGTCTGCTCA.....................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................CCTGCGTCCAAGTGAAGTTAAATTTG...........................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................TCGCAGAGCAACTGT---A-GCAAA-TC..........................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---A-GCAAA-TCATTCACCTGCGTCAAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......GTCCAGAGATCGCCTTG-GA..................................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
............................................AGCAACTGT---A-GCAAA-TCATTCACCTGCGT..............................................................................................	29	1	4.00	4	4	0	0	0	0	0
............................................AGCAACTGT---A-GCAAA-TCATTCACC...................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.......................................................................................................GTTTTGGGTCTGCTCACA---------------------------------------------------	18	1	2.00	2	0	0	2	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GCAAA-TCA.........................................................................................................	26	1	2.00	2	0	2	0	0	0	0
..............................................CAACTGT---A-GCAAA-TCATTCACCTGC................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..................................................................................GTGAAGTTAAATTTGGATGT......................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................TCGCAGAGCAACTGT---A-GCAAA-TC..........................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................GGTTTTGGGTCTGCTCAC....................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................GTGAAGTTAAATTTGGATGTGG....................................................................	22	1	1.00	1	0	0	1	0	0	0
..................................................................................GTGAAGTTAAATTTGGATGC......................................................................	20	1	1.00	1	1	0	0	0	0	0
........................GAGGTTTAAGTACTTCGCAGAGCA............................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..............................................CAACTGT---A-GCAAA-TCATTCACCTGCGT..............................................................................................	27	1	1.00	1	1	0	0	0	0	0
....GCGTCCAGAGATCGCCTTG-GA..................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GCAAA-TCATT.......................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................CTTCGCAGAGCAACTGT---A-GCAAA-TC..........................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......GTCCAGAGATCGCCTTG-GG..................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droAna3

GCTTACTTTAAA-CTTGGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----G-AGCCA-TCATTCACCCGCATCCAAGTGAAGACATATTGGATCATGGTTTTAGATGGGCTTACAGTTT-----------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................CATGGTTTTAGATGGGCTTACAGTT................................................	25	1	40.00	40	37	3	0	0	0	0
...................................................................................................CATGGTTTTAGATGGGCTTACAGTTT-----------------------------------------------	26	1	30.00	30	27	3	0	0	0	0
....................................................................................................ATGGTTTTAGATGGGCTTACAGTT................................................	24	1	11.00	11	9	2	0	0	0	0
....................................................................................................ATGGTTTTAGATGGGCTTACAGTTT-----------------------------------------------	25	1	7.00	7	5	2	0	0	0	0
.....................................ATCGCAGATCAAGCA----G-AGCCA-TCATT.......................................................................................................	26	1	5.00	5	2	2	0	0	0	1
......................................TCGCAGATCAAGCA----G-AGCCA-TCATTC......................................................................................................	26	1	4.00	4	3	1	0	0	0	0
........................................................................................................TTTTAGATGGGCTTACAGTTT-----------------------------------------------	21	1	3.00	3	3	0	0	0	0	0
.....................................ATCGCAGATCAAGCA----G-AGC...............................................................................................................	19	1	3.00	3	0	1	0	0	1	1
.....................................ATCGCAGATCAAGCA----G-AGCCA-TC..........................................................................................................	23	1	3.00	3	2	1	0	0	0	0
....................................CATCGCAGATCAAGCA----G-AGCCA-TCAT........................................................................................................	26	1	3.00	3	3	0	0	0	0	0
................................................................................................GATCATGGTTTTAGATGGGCTTACAGTT................................................	28	1	3.00	3	2	1	0	0	0	0
..................................................................................................TCATGGTTTTAGATGGGCTTACAGTTT-----------------------------------------------	27	1	3.00	3	2	1	0	0	0	0
.................................................................................................ATCATGGTTTTAGATGGGCTTACAGTTT-----------------------------------------------	28	1	2.00	2	2	0	0	0	0	0
...............................................AAGCA----G-AGCCA-TCATTCACCCGCATCC............................................................................................	27	1	2.00	2	2	0	0	0	0	0
.......................................................................................................GTTTTAGATGGGCTTACAGTTT-----------------------------------------------	22	1	2.00	2	2	0	0	0	0	0
....................................CATCGCAGATCAAGCA----G-AGCCA-TCATT.......................................................................................................	27	1	2.00	2	2	0	0	0	0	0
......................................TCGCAGATCAAGCA----G-AGCCA-TC..........................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................ATCATGGTTTTAGATGGGCTTACAGTT................................................	27	1	2.00	2	1	1	0	0	0	0
.....................................ATCGCAGATCAAGCA----G-AGCCA-TCAT........................................................................................................	25	1	2.00	2	1	0	0	0	1	0
................................................................................................GATCATGGTTTTAGATGGGC........................................................	20	1	2.00	2	0	2	0	0	0	0
.......................................CGCAGATCAAGCA----G-AGCCA-TC..........................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................TAAAGACATCGCAGATCAAGC.........................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........AAA-CTTGGTTTGG-GAGGT...............................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCATGGTTTTAGATGGGCT.......................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................TGGTTTTAGATGGGCTTACAGTT................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................ATGGTTTTAGATGGGCTTACA...................................................	21	1	1.00	1	1	0	0	0	0	0
......................................TCGCAGATCAAGCA----G-AGCCA-TCATT.......................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................CATCGCAGATCAAGCA----G-AGCC..............................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................CATGGTTTTAGATGGGCTTACAGT.................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................GAAGACATATTGGATCATGGTT..................................................................	22	1	1.00	1	0	0	0	0	0	1
.....................................ATCGCAGATCAAGCA----G-AGCCA-TCATTC......................................................................................................	27	1	1.00	1	0	1	0	0	0	0
....................................................................................................ATGGTTTTAGATGGGCTT......................................................	18	1	1.00	1	0	0	1	0	0	0
..................................................................................................TCATGGTTTTAGATGGGCTTACAGTT................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................GATCAAGCA----G-AGCCA-TCATTCACCCGCA...............................................................................................	28	1	1.00	1	0	1	0	0	0	0
...............................................................................CAAGTGAAGACATATTGGATC........................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................GTTTTAGATGGGCTTACAGTT................................................	21	1	1.00	1	1	0	0	0	0	0
.CTTACTTTAAA-CTTGGTTTGG-....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................CATCGCAGATCAAGCA----G-AGCCA-TCATC.......................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.........AAA-CTTGGTTTGG-GAGGTTTAAAGAC.......................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
........................................................................................................TTTTAGATGGGCTTACAGTT................................................	20	1	1.00	1	1	0	0	0	0	0
....................................CATCGCAGATCAAGCA----G-AGCCA-C...........................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................CATGGTTTTAGATGGGCTTACAGC.................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................ATCGCAGATCAAGCA----G-AGCCA-T...........................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................CA-TCATTCACCCGCATCCAAGT........................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................TCGCAGATCAAGCA----G-AGCCA-TCAT........................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................CATTCACCCGCATCCAAGTGAAGACAT................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................GGTTTTAGATGGGCTTACAGTC................................................	22	1	1.00	1	0	1	0	0	0	0
.........AAA-CTTGGTTTGG-GAGGTTTAAAGACATC....................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.........................................................................................................TTTAGATGGGCTTACAGTTT-----------------------------------------------	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................CATGGTTTTAGATGGGCTT......................................................	19	1	1.00	1	0	0	0	0	0	1

droBip1

GCTTGCTTCGA-AGTTAGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----G-AGCCA-TCATTCACCCGTATCCAAGTGAAGACTTATTGGATCATGGTTTTAGATGGGCTTACAA--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTTGGTGTTCAAGTCTCGCCGGA-GAGGTTTTAAGACTTCGCAGATCAAACAT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGTCCAATTAGCTTGTGGTTTTGGATTGGCTTACA---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTGGCGTTTTATTTTCGTCGGT-AAGGTTTTAAGACTTCGCAGATTAACCTT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCCCAATTGGTTTGTGGTTTTGGATTGGCTTACAAATCT----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTTGGCGTTTAAATTTGGCCTTT-GAGGTTTTAAGACTTCGCAGATCAATCAT---G-TGCAA-TCATTCACCCGCGTCCAAGTGAAGCCCAATTGGCTCGTGGTTTTGGATTGGCTTACAAGCC--ATTAAATAAAGCC--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTAGGCGTTTAAGTTTCGCCTTG-GAGGTTTTAAGACTTCGCAGATCAATCAT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGTCCAATTGGTTCGTGGTTTTGGATTGGCTTACAA--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTTGGCGTTGAGTTTTCGCTTGG-GCGGTTTTAAGACTTCGCAGATCAAACAA---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCCCAATGGGTTCGTGGTTTTGGATTGGCTTACAAGTATAACTA-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCTGGCGTTGAATTTTCGCCTGG-GAGGTTTAAAGACTTCGCAGATGAAATAT---G-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTGCGTGGTTTTGGATTGGCTTACAATACTAA--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATTGGCATTAAATTTTTGTCTAG-GAGGTTTTAAGACTTTGCAGATTAAACAT---A-AGCAA-TCATTCACCCGCGACCAAGTGAAGTCTATTTGGTTCGTGGTTTTGGATTGGCTTACAA--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGTAGATCAAATAT---A-AGCAA-TCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGAATAATAAAATAAA-----------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................CTTCGTAGATCAAATAT---A-AGCAA-TCA.........................................................................................................	26	1	55.00	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	3	0	12	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	0	0	7	0	4	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0
....................................CTTCGTAGATCAAATAT---A-AGCAA-TC..........................................................................................................	25	1	42.00	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	7	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................GTGGTTTTGGATTGGCTTACAAGA................................................	24	1	39.00	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	1	3	3	0	0
.......................................................................................................GTTTTGGATTGGCTTACAAGA................................................	21	1	33.00	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	3	4	1	0	2	0	2	1	0	1	0	0	0
....................................CTTCGTAGATCAAATAT---A-AGCAA-TCATT.......................................................................................................	28	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	3	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TTTTGGATTGGCTTACAAGA................................................	20	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	1	1	2	0	1	3	0	0
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.......................................................................................GCTCAATTGGTTCGTGGTTT.................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............TTTCGCCTGA-AAGGT...............................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................CGTGGTTTTGGATTGGCTTACAAGAA...............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................AGTGAAGCTCAATTGGTTCGTGG....................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGTAGATCAAATAT---A-AGC...............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CTCAATTGGTTCGTGGTTTTG...............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AATTGGTTCGTGGTTTTGGA.............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGCAGATCAAATAT---G-AGCAA-TCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGAATAATAAAATAAA-----------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................GTTTTGGATTGGCTTACAAGA................................................	21	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGGATTGGCTTACAAGA................................................	19	1	2.00	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................TTTAAGACTTCGCAGATC.............................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TTCGCAGATCAAATAT---G-AG................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................CTTCGCAGATCAAATAT---G-AGCAA-T...........................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TTTTAAGACTTCGCAGAT..............................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CCCGCATCCAAGTGAAGCTCAAT..............................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTTCGCCTGA-AAGGTTTTAAGA........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................CGCATCCAAGTGAAGCTCAATTGGT..........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................AGTGAAGCTCAATTGGTT.........................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GGTTTTGGATTGGCTTACAAGA................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTTCAATTTTCGCCTGA-AAA.................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CTTCGCAGATCAAATA........................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................CTTCGCAGATCAAATAT---G-AGCAA-TCATT.......................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GTTCGTGGTTTTGGATTGGC........................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTGA-AAGGTTTTAAGACTTCGCA.................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CTTCGCAGATCAAATAT---G-AGCAA-TCATTC......................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGGATTGGCTTACAAGA................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GTTTTGGATTGGCTTACAAGG................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTGGTTCGTGGTTTTGGATTGGCTTACA...................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................A-AAGGTTTTAAGACTTCGCAGA...............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TTGGATTGGCTTACAAGG................................................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TTTGGCGTTCAATTTTCGCCTAAAAAGGTTTTAAGACTTCGCAGATGAAATAT---G-AGCAA-TCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGAATAATAAAATAAA-----------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................GTTTTGGATTGGCTTACAAGA................................................	21	1	4.00	4	0	2	2	0
........................................................................................................TTTTGGATTGGCTTACAAGA................................................	20	1	4.00	4	0	1	3	0
....................................CTTCGCAGATGAAATAT---G-AGCAA-TCATT.......................................................................................................	28	1	3.00	3	0	0	3	0
.................................................................................................TTCGTGGTTTTGGATTGGCTTACAAGA................................................	27	1	2.00	2	0	1	0	1
............................................................................................ATTGGTTCGTGGTTTTGGA.............................................................	19	1	2.00	2	0	1	1	0
......................................TCGCAGATGAAATAT---G-AGCAA-TCATTC......................................................................................................	27	1	2.00	2	0	0	0	2
....................................................................................................GTGGTTTTGGATTGGCTTACAAGA................................................	24	1	2.00	2	0	1	0	1
.......................................CGCAGATGAAATAT---G-AGC...............................................................................................................	18	1	2.00	2	0	0	2	0
.........................................................................................................TTTGGATTGGCTTACAAGA................................................	19	1	2.00	2	0	0	1	1
..................................................................................................TCGTGGTTTTGGATTGGCTTACAAGA................................................	26	1	2.00	2	1	0	0	1
.....................................................................................................TGGTTTTGGATTGGCTTACAAGA................................................	23	1	2.00	2	0	0	1	1
.............TTTCGCCTAAAAAGGTTTTAAGACTT.....................................................................................................................................	26	1	1.00	1	0	0	1	0
.........................................CAGATGAAATAT---G-AGCAA-T...........................................................................................................	19	1	1.00	1	0	0	1	0
....................................CTTCGCAGATGAAATAT---G-AGCAA-TCTG........................................................................................................	27	1	1.00	1	0	1	0	0
.....................................TTCGCAGATGAAATAT---G-AGCAA-TCA.........................................................................................................	25	1	1.00	1	0	0	0	1
.....................................................................................................TGGTTTTGGATTGGCTTACAAG.................................................	22	1	1.00	1	0	0	1	0
....................................................T---G-AGCAA-TCATTCACCCGCA...............................................................................................	20	1	1.00	1	0	0	1	0
.................................................................CATTCACCCGCATCCAAGTG.......................................................................................	20	1	1.00	1	0	0	1	0
...................................................................................................CGTGGTTTTGGATTGGCTTACAAGAA...............................................	26	1	1.00	1	0	0	1	0
......................................................................................................GGTTTTGGATTGGCTTACAAGA................................................	22	1	1.00	1	0	1	0	0
.....................................TTCGCAGATGAAATAT---G-AGCAA-TCATT.......................................................................................................	27	1	1.00	1	1	0	0	0
..........................................................................................................TTGGATTGGCTTACAAGA................................................	18	1	1.00	1	0	0	1	0
......................................................................ACCCGCATCCAAGTGAAGCTCAATT.............................................................................	25	1	1.00	1	0	0	0	1
........................................................................................CTCAATTGGTTCGTGGTTTTGGATT...........................................................	25	1	1.00	1	0	1	0	0
.....................................TTCGCAGATGAAATAT---G-AGCAA-TCG.........................................................................................................	25	1	1.00	1	0	0	0	1
....................................CTTCGCAGATGAAATAT---G-AGCAA-TT..........................................................................................................	25	1	1.00	1	0	1	0	0
...................................................................................................CGTGGTTTTGGATTGGCTTACAAGA................................................	25	1	1.00	1	0	0	1	0
.....................................................................CACCCGCATCCAAGTGAAGCTCAATTG............................................................................	27	1	1.00	1	0	0	1	0
......................................................................ACCCGCATCCAAGTGAAGCTCAATTGG...........................................................................	27	1	1.00	1	0	0	0	1
.....................................TTCGCAGATGAAATAT---G-AGC...............................................................................................................	20	1	1.00	1	0	0	1	0
.....................................TTCGCAGATGAAATAT---G-AGCAA-TCATTC......................................................................................................	28	1	1.00	1	0	1	0	0
........................................................................CCGCATCCAAGTGAAGCTCAATTGGTTC........................................................................	28	1	1.00	1	1	0	0	0
......................................TCGCAGATGAAATAT---G-AGC...............................................................................................................	19	1	1.00	1	0	0	1	0
....................................CTTCGCAGATGAAATAT---G-AGCAA-TCA.........................................................................................................	26	1	1.00	1	0	1	0	0
........................................GCAGATGAAATAT---G-AGCAA-T...........................................................................................................	20	1	1.00	1	0	0	1	0
............................................................................ATCCAAGTGAAGCTCAATTGGT..........................................................................	22	1	1.00	1	1	0	0	0
................................................................................AAGTGAAGCTCAATTGGTTC........................................................................	20	1	1.00	1	1	0	0	0

droYak3

GTTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGATTTCGCAGATCAAATAT---A-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCACAATTGGTTCGTGGTTTTGGATTGGCTTACAA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................AATTGGTTCGTGGTTTTGGA.............................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
......GTTCAATTTTCGCCTGT-AAGGTTTTAAGA........................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............TTTTCGCCTGT-AAGGTTTTAAGAT.......................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................TAT---A-AGCAA-TCATTCACCCGCGT..............................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................AATTGGTTCGTGGTTTTGGATTGGCT.......................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................TTTCGCAGATCAAATAT---A-AGCA..............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................CAAATAT---A-AGCAA-TCATTCACCCGCGTC.............................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........ATTTTCGCCTGT-AAGGTTTTAAGA........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................TTTCGCAGATCAAATAT---A-AGCAA-T...........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................TCATTCACCCGCGTCCAAGT........................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................ATTGGTTCGTGGTTTTGGAT............................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................CATTCACCCGCGTCCAAGTGAAGC...................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........TCAATTTTCGCCTGT-AAGGTTTTAAGAT.......................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................TTCGCAGATCAAATAT---A-AGCAA-TCAT........................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TTCGCAGATCAAATAT---A-AGCAA-TCATC.......................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................TTCGCAGATCAAATAT---A-AGCAA-TC..........................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................TCGCAGATCAAATAT---A-AGCAA-T...........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................TCAAATAT---A-AGCAA-TCATTCACCCGCGTC.............................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................CATTCACCCGCGTCCAAGTG.......................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CCTGT-AAGGTTTTAAGATTTCGC..................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................GTTTTAAGATTTCGCAGA...............................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................CACAATTGGTTCGTGGTTTTGGATTGGCT.......................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................CAATTGGTTCGTGGTTTTGGATTGGC........................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................TTCGCAGATCAAATAT---A-AGCAA-TCATT.......................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

ATTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGACTCCGCAGAACAATTAT---A-AGCAA-TCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTTGCTTACAA--------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................TTCGTGGTTTTGGATTTGCTTACA...................................................	24	1	9.00	9	0	0	1	0	4	4	0
.................................................................................................TTCGTGGTTTTGGATTTGCTTAC....................................................	23	1	8.00	8	0	0	0	0	4	4	0
.................................................................................................TTCGTGGTTTTGGATTTGCTT......................................................	21	1	6.00	6	0	0	0	0	2	4	0
....................................................T---A-AGCAA-TCATTCACCCGCGTCC............................................................................................	23	1	4.00	4	0	0	0	0	0	4	0
....................................CTCCGCAGAACAATTAT---A-AGC...............................................................................................................	21	1	4.00	4	3	1	0	0	0	0	0
......GTTCAATTTTCGCCTGT-AAGGTTTTAAGA........................................................................................................................................	29	1	3.00	3	1	0	0	0	2	0	0
.................................................................................................TTCGTGGTTTTGGATTTGCTTA.....................................................	22	1	3.00	3	1	0	0	0	1	1	0
..........................................................................................CAATTGGTTCGTGGTTTTGGATTTGC........................................................	26	1	2.00	2	0	2	0	0	0	0	0
............................................................................................ATTGGTTCGTGGTTTTGGA.............................................................	19	1	2.00	2	0	0	0	1	1	0	0
......GTTCAATTTTCGCCTGT-AA..................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
.........................................................................................TCAATTGGTTCGTGGTTTTGGATTTGCT.......................................................	28	1	2.00	2	1	1	0	0	0	0	0
...........................................................................................AATTGGTTCGTGGTTTTGGA.............................................................	20	1	2.00	2	0	0	0	2	0	0	0
.................................................................................................TTCGTGGTTTTGGATTTGCT.......................................................	20	1	2.00	2	0	0	0	0	1	1	0
....................................CTCCGCAGAACAATTAT---A-AGCAA-TC..........................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
.............................................................AA-TCATTCACCCGCGTCCAAGTGAAG....................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...................CTGT-AAGGTTTTAAGACTCCGC..................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
....................................CTCCGCAGAACAATTAT---A-AGCAA-TCATT.......................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.....CGTTCAATTTTCGCCTGT-AAGGT...............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................AA-TCATTCACCCGCGTCCAAGTG.......................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................AATTGGTTCGTGGTTTTGGATT...........................................................	22	1	1.00	1	0	0	0	1	0	0	0
....................................CTCCGCAGAACAATTAT---A-AGCAA-TCATTC......................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.............TTTCGCCTGT-AAGGTTTTAAGACTCCGC..................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
......GTTCAATTTTCGCCTGT-AAGGTT..............................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.....................................TCCGCAGAACAATTAT---A-AGCAA-TCA.........................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................GGTTCGTGGTTTTGGATTTGC........................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................ACCCGCGTCCAAGTGAAGCTCAATTGGTT.........................................................................	29	1	1.00	1	0	0	0	0	1	0	0
.........................................................................CGCGTCCAAGTGAAGCTCAATTGGTTC........................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................TTGGTTCGTGGTTTTGGA.............................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................TTTTAAGACTCCGCAGAACA............................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................CTCAATTGGTTCGTGGTTTTGGATTTGCT.......................................................	29	1	1.00	1	0	1	0	0	0	0	0
.................................................TTAT---A-AGCAA-TCATTCACCCGCGTCCAAG.........................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
....................................CTCCGCAGAACAATTAT---A-AGCAA-TCAT........................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
................................................................TCATTCACCCGCGTCCAAG.........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
....................................CTCCGCAGAACAATTAT---A-AGCAA-TCA.........................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.............................TTTAAGACTCCGCAGAACAATTAT---A-AGC...............................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...................................ACTCCGCAGAACAATTAT---A-AGC...............................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
......................................................................................AGCTCAATTGGTTCGTGGTTTTGGATC...........................................................	27	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................TTCGTGGTTTTGGATTTGC........................................................	19	1	1.00	1	0	0	0	0	0	1	0
.................................................TTAT---A-AGCAA-TCATTCACCCGCGTCCA...........................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................AATTGGTTCGTGGTTTTGGATTTG.........................................................	24	1	1.00	1	0	0	0	0	0	1	0
..................................................TAT---A-AGCAA-TCATTCACCCGCGTCCAAG.........................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................AATTGGTTCGTGGTTTTGGATTTGC........................................................	25	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................AAGCTCAATTGGTTCGTGGTTTTGGA.............................................................	26	1	1.00	1	1	0	0	0	0	0	0
..................................................................................GTGAAGCTCAATTGGTTCGTG.....................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...........ATTTTCGCCTGT-AAGGTTTTAAG.........................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................ATTGGTTCGTGGTTTTGGAT............................................................	20	1	1.00	1	0	0	0	0	1	0	0
....................................CTCCGCAGAACAATTAT---A-AGCA..............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
.......................................................................CCCGCGTCCAAGTGAAGCTCAATTG............................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................AATTGGTTCGTGGTTTTGGATTTGCT.......................................................	26	1	1.00	1	0	0	0	0	1	0	0
.............TTTCGCCTGT-AAGGTTTTAAGA........................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................TGGTTTTGGATTTGCTTACAA--------------------------------------------------	21	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................CAATTGGTTCGTGGTTTTGGA.............................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........................AGGTTTTAAGACTCCGCAGAACA............................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..............................................................A-TCATTCACCCGCGTCCAAGTG.......................................................................................	22	1	1.00	1	0	1	0	0	0	0	0

dgr_69

scaffold_14906:8017288-8017438 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.4	-24.8	-24.8