dgr_62

CTAAAGTGTTGAAAATTGGAAAGCGTCAACTAATTGTGGACATTTTTAGGTCGTGATGTGCGCAAATATGTTTGTATACATTATTTTAATCATATTGCACATATCCCGGCCTATAGGTGTGACTGCAAAATTCTGCAAATATAAATATCGCTTTTGTATGTATGT *********************************((((((((((.(((((((.((((((.((((.((((.(((............))).)))))))).)))))).))))))).))))))..))))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
............................................................................................TATTGCACATATCCCGGCCTAT...................................................	22	0	1	72.00	72	72	0
............................................................................................TATTGCACATATCCCGGCCT.....................................................	20	0	1	12.00	12	12	0
............................................................................................TATTGCACATATCCCGGCCTA....................................................	21	0	1	7.00	7	7	0
.............................................................................................ATTGCACATATCCCGGCCTAT...................................................	21	0	1	5.00	5	5	0
.............................................................................................ATTGCACATATCCCGGCCT.....................................................	19	0	1	2.00	2	2	0
............................................................................................TATTGCACATATCCCGGCCTATT..................................................	23	1	1	2.00	2	2	0
............................................................................................TATTGCACATATCCCGGCCTTT...................................................	22	1	1	1.00	1	1	0
............................................................................................TATTGCACATATCCCGGCCTATA..................................................	23	0	1	1.00	1	1	0
..............................................................................................TTGCACATATCCCGGCCTAT...................................................	20	0	1	1.00	1	1	0
............................................................................................TATTGCACATATCCCGGCCTAA...................................................	22	1	1	1.00	1	1	0
...........................................................................................TTATTGCACATATCCCGGCCTT....................................................	22	2	1	1.00	1	1	0
...........................................................................................TTATTGCACATATCCCGGCCTAT...................................................	23	1	1	1.00	1	1	0
............................................................................................TATTGCACATATCCCGGCCTTTA..................................................	23	1	1	1.00	1	1	0
............................................................................................TATTGCACATATCCCGGCC......................................................	19	0	1	1.00	1	1	0
..................................................TCGTGATGTGCGCAAATATGTT.............................................................................................	22	0	1	1.00	1	0	1
............................................................................................TATTGCACATCTCCCGGCCTAC...................................................	22	2	2	0.50	1	1	0

Species	Coordinate	ID	Alignment
droGri2	scaffold_15245:17564580-17564744 +	dgr_62	CTAAAGTGTTGAA---A--ATTG-GAAAGCGT------C--------------AACTA-ATTGTGGACATTTTTAGGTCGTGATGTGCGCAAATATGTTTGTATACATT-ATTTTA---------------ATCATATTGCACATATCCCGGCCTATAGGTGTGACTGCAAAATTCTGC----------------------------------AAATATAAATAT--------------CGCTTTTGTAT--------GTATGT
droVir3	scaffold_12875:13668696-13668876 -	dvi-mir-310	ATGGAACATTAAA---ACAATTTGGTAA-------ATACTGCGCATAGCCTTGCGC-CTTATGTAATCATTTTTAGGCCGTGCTCTGTGTGAATATGTTTTT------A-ACTATA---------------ATCATATTGCACATCTCCCGGCCTATAAGTGTAGATGCATAATTCATC----------------------------------AAATATAAATATAA-ATGTACTGC-------GTGTAT--------GTATGT
droMoj3	scaffold_6496:9090216-9090423 -	dmo_23	TTAAAATAAATTTTCAC--CATA-AATAT---------C--------------GTTTA-AATGTATCCATTTTTAGGCCGTGCTATGTGACAATATGTATTT--AAATT-GTATTT---------------ATCATATTGCACATCTCCCGGCCTACAAGTGTAAATGCACAATTCAACTATGTACATAATTCATAATTCTATGGTATGTCTG-TATGTAAATAGAAATTGTACCGCGGCGTTTTT--GT--------GCACGA
droWil2	scf2_1100000004513:3453387-3453530 +	dwi_33	GGTGGGGA----A---A--AA---GAAGGAGTCAATGAC--------------CACAAATTTTCAAACATTCTTTGGACGGACTTG--TCAAATATGTTTGG------A-TATAAAATTCAACAATTGGACAACATATTGATCAAAACCGGGCCAAAAATTGTT---GGAAAATTCTTC----------------------------------AAA------------------------------------------------
droPer2	scaffold_4:2566841-2566941 +		TATATACA-----------------------------------------------------------------------------------------T------ACATA-GTTTAA---------------AAAATATTGCACACTTCTCAGACTACAAATGTGAACTGTC----TGGT-----------------------------CTTCAAAAAATAAA------ACATAC-----CACACATGTAT--------GTATGT
droAna3	scaffold_13266:4133031-4133191 +	dan-mir-310	AAAGTGCG---AA---A--A------------------T--------------AGCAA-AACATAAACACTTGCAGGACGGGGAGCGTGACAATATATATAT------TTTATAAA---------------CATATATTGCACACCTCCCGGCCTATAAGTGTAAATGTTC----CTAC---------AGGTAAAACT------------TCTAAGGAAAAACTT--------------CATTTTT--GAGAAGCTCAGAATTT
droBip1	scf7180000396427:2575750-2575897 +		GAAAAGTGCGCGA---A--A------------------T--------------ATCAA-AACATAAACACTTGCAGGACGGGATGTGTGACAATATTTTAAT------T-ATTAAA---------------CAAATATTGCACACCTCCTGGCCTTTAAATGTAAATGTTT----CTAC-----------------------------TGCCGAAGGAAAAACTT--------------CATTTTC--G--TA-----GCTCGC
droFic1	scf7180000454039:1775868-1775922 -		CTAAAATATCTGT---GAAATCA----------------------------------------------------------AAAAAATAATT------------------------------------------ATGTAATTTA-------------------------------------------------------------------------------------------------TTTTT--G--GT-----TCTTGA
droBia1	scf7180000302291:2816552-2816647 +		AAAGCGC-------------------------------C--------------TGCAAATACACAAGCATTTGCAGGCCGGGTCGCGTGCCAATGTATTGAC---------TTCAG---------------GCTATATTGCACACCTCCCGGCCCATAAATGCAA---------------------------------------------------------------------------------------------------
droEug1	scf7180000409474:1490337-1490433 +		AAAAGT-G-----------------------------AG--------------TGCACGTACACAAACATTTGCAGGTGGGGTTGTGGGCAAATATATTTAT------T-TTTCAA---------------GTTATATTGCACACTTCCCGGCCTTTAAATGT-----------------------------------------------------------------------------------------------------
droYak3	2R:12725038-12725051 +		GTGAAATCATAAA---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

CTAAAGTGTTGAA---A--ATTG-GAAAGCGT------C--------------AACTA-ATTGTGGACATTTTTAGGTCGTGATGTGCGCAAATATGTTTGTATACATT-ATTTTA---------------ATCATATTGCACATATCCCGGCCTATAGGTGTGACTGCAAAATTCTGC----------------------------------AAATATAAATAT--------------CGCTTTTGTAT--------GTATGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................TATTGCACATATCCCGGCCTAT...........................................................................................................	22	1	72.00	72	72	0
.......................................................................................................................................TATTGCACATATCCCGGCCT.............................................................................................................	20	1	12.00	12	12	0
.......................................................................................................................................TATTGCACATATCCCGGCCTA............................................................................................................	21	1	7.00	7	7	0
........................................................................................................................................ATTGCACATATCCCGGCCTAT...........................................................................................................	21	1	5.00	5	5	0
........................................................................................................................................ATTGCACATATCCCGGCCT.............................................................................................................	19	1	2.00	2	2	0
.......................................................................................................................................TATTGCACATATCCCGGCCTATT..........................................................................................................	23	1	2.00	2	2	0
.......................................................................................................................................TATTGCACATATCCCGGCCTATA..........................................................................................................	23	1	1.00	1	1	0
.........................................................................................................................................TTGCACATATCCCGGCCTAT...........................................................................................................	20	1	1.00	1	1	0
.......................................................................................................................................TATTGCACATATCCCGGCCTAA...........................................................................................................	22	1	1.00	1	1	0
.......................................................................................................................................TATTGCACATATCCCGGCC..............................................................................................................	19	1	1.00	1	1	0
.............................................................................TCGTGATGTGCGCAAATATGTT.....................................................................................................................................................................	22	1	1.00	1	0	1

droVir3

ATGGAACATTAAA---ACAATTTGGTAA-------ATACTGCGCATAGCCTTGCGC-CTTATGTAATCATTTTTAGGCCGTGCTCTGTGTGAATATGTTTTT------A-ACTATA---------------ATCATATTGCACATCTCCCGGCCTATAAGTGTAGATGCATAATTCATC----------------------------------AAATATAAATATAA-ATGTACTGC-------GTGTAT--------GTATGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................TATTGCACATCTCCCGGCCTAT...........................................................................................................	22	1	184062.00	184062	89	5	22844	13670	619	20	187	7	94	5	58	336	1357	168	3	11	0	9	1	48	313	3	11	961	9558	7053	12700	9627	3086	1657	937	2770	15699	97	15956	13665	18130	14194	1339	92	1163	2725	2371	1489	1160	1144	896	671	1259	364	638	292	198	155	124	5	5	379	476	1151	6	10	2
.......................................................................................................................................TATTGCACATCTCCCGGCCTA............................................................................................................	21	2	50686.00	101372	371	11	9246	5864	542	67	282	36	134	15	110	202	917	141	0	5	0	1	2	9	712	3	2	1101	3186	2637	4193	3078	1754	1248	746	1946	7199	237	7575	7229	9043	6958	1687	194	1420	3433	2738	2178	1642	1852	1499	999	1906	537	1013	430	289	257	196	6	8	428	728	1090	9	31	0
.......................................................................................................................................TATTGCACATCTCCCGGCCT.............................................................................................................	20	2	25278.50	50557	149	7	8100	1638	463	138	359	30	134	28	162	111	882	113	0	4	0	2	1	4	735	4	1	1406	1609	1015	1794	932	949	799	452	1155	2332	294	3118	2052	6829	2461	3247	288	371	873	754	627	464	407	352	281	577	182	306	169	114	84	79	7	4	128	207	749	5	20	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATA..........................................................................................................	23	1	18413.00	18413	18	2	1720	1514	24	1	2	0	7	0	0	19	132	8	1	0	0	0	0	6	13	0	0	33	566	361	592	414	262	174	95	269	1220	7	1102	763	2088	1372	48	8	322	717	660	522	375	492	375	281	600	174	288	150	103	85	73	4	0	45	225	81	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAA.........................................................................................................	24	1	10804.00	10804	2	1	829	549	9	1	0	0	1	0	1	3	51	6	0	0	0	0	0	0	3	0	1	13	446	220	511	175	35	37	10	55	1218	1	892	942	3161	1080	57	2	37	69	59	50	37	36	25	28	50	4	17	9	6	6	3	0	0	0	19	36	1	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAAA........................................................................................................	25	2	5763.00	11526	2	0	1724	147	11	0	2	0	2	0	5	6	89	7	0	0	0	0	0	0	4	0	0	22	643	212	798	167	5	5	4	22	1093	2	757	917	3590	850	127	0	35	80	66	26	16	9	6	4	11	0	2	2	3	1	1	0	0	0	14	37	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTAT...........................................................................................................	21	1	2189.00	2189	0	0	1846	136	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	3	10	9	15	14	4	3	0	3	16	1	40	24	29	20	2	0	0	1	2	0	2	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATT..........................................................................................................	23	1	2170.00	2170	2	0	383	279	10	0	1	0	1	0	1	2	13	2	0	0	0	0	0	1	3	0	0	6	79	57	92	65	26	28	9	27	105	1	114	79	123	136	6	1	27	66	59	39	42	43	36	27	34	16	28	18	12	11	6	0	0	16	18	19	0	1	0
..........................................................................AGGCCGTGCTCTGTGTGAATATG.......................................................................................................................................................................	23	1	1706.00	1706	7	0	70	5	110	7	137	3	99	7	58	23	65	18	0	0	0	0	0	1	34	0	1	52	89	88	277	177	39	17	9	20	35	3	25	14	48	50	96	3	0	4	1	1	0	1	0	0	2	0	0	0	0	1	0	0	0	1	1	2	0	5	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAAAA.......................................................................................................	26	2	1552.50	3105	0	0	785	23	1	0	0	0	2	0	0	2	41	0	0	0	0	0	0	0	0	0	0	4	200	88	289	33	1	1	2	4	226	0	200	175	804	159	40	0	2	5	3	2	0	0	0	1	0	0	0	1	1	0	1	0	0	0	0	9	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTAC...........................................................................................................	22	2	1378.50	2757	8	0	49	2354	19	2	11	0	0	0	3	0	2	0	0	1	0	0	0	0	16	0	0	33	13	12	18	8	5	7	2	6	24	6	18	12	31	14	30	4	4	12	2	2	1	2	4	2	3	2	1	0	1	0	0	0	0	0	3	10	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATC..........................................................................................................	23	1	1276.00	1276	27	0	365	72	5	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	33	2	0	6	7	13	9	11	173	103	35	139	5	6	7	1	11	10	5	8	11	39	36	12	9	11	15	7	19	5	9	4	4	4	0	0	1	7	11	7	0	4	1
.......................................................................................................................................TATTGCACATCTCCCGGCC..............................................................................................................	19	2	809.50	1619	62	1	296	120	17	3	7	2	3	0	2	0	9	1	0	0	0	0	0	1	15	0	0	53	75	34	49	21	30	30	16	25	66	9	74	58	156	47	51	5	21	46	35	21	20	18	14	15	26	7	12	7	6	2	6	0	0	5	11	7	1	0	1
.......................................................................................................................................TATTGCACATCTCCCGGCCTATCC.........................................................................................................	24	1	647.00	647	39	0	315	10	6	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	6	0	0	2	2	6	6	2	76	41	29	64	0	15	0	0	0	0	2	2	0	1	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	11	1	0	0	2	2
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAAAAA......................................................................................................	27	2	638.00	1276	0	0	398	9	0	0	0	0	0	0	2	1	15	1	0	0	0	0	0	0	0	0	0	2	75	28	138	9	0	0	0	2	88	0	84	48	307	49	5	0	1	5	3	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	2	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTA............................................................................................................	20	2	361.50	723	1	0	641	27	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	1	2	2	2	0	0	0	2	5	0	9	8	5	6	1	0	0	0	0	0	0	0	0	2	1	0	2	0	1	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTT............................................................................................................	21	2	359.00	718	16	0	223	93	7	0	1	0	2	0	0	2	2	1	0	0	0	0	0	0	5	0	0	6	16	14	15	13	36	27	16	39	15	2	20	15	41	7	5	5	2	5	9	8	4	4	4	3	10	2	5	2	0	2	1	0	0	3	5	5	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCA.............................................................................................................	20	2	346.50	693	0	0	230	17	2	0	3	0	3	0	1	1	19	3	0	0	0	0	0	0	2	0	0	10	25	8	28	9	2	3	3	1	14	1	23	16	146	32	76	1	0	2	0	0	0	2	0	0	1	0	2	0	0	0	0	0	0	0	0	6	1	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATAT........................................................................................................................................................................	22	1	320.00	320	2	0	14	3	3	0	7	0	5	0	3	2	13	7	0	0	0	0	0	0	3	0	0	6	11	9	34	38	9	6	2	10	13	1	20	6	54	27	4	1	1	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0
.........................................................................................................................................TTGCACATCTCCCGGCCTAT...........................................................................................................	20	1	304.00	304	0	0	157	31	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	1	0	0	0	10	7	9	8	3	1	0	1	13	1	18	12	17	8	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGC...............................................................................................................	18	2	300.50	601	14	0	18	2	8	0	3	0	3	0	5	0	5	0	0	0	0	0	0	0	2	0	0	12	47	24	30	34	11	7	5	10	52	3	69	55	101	44	14	0	1	4	3	2	3	1	2	1	0	0	0	0	0	0	0	2	0	1	1	1	0	0	1
.......................................................................................................................................TATTGCACATCTCCCGGCCTC............................................................................................................	21	2	290.00	580	12	1	150	10	33	7	7	1	0	0	2	0	12	0	0	0	0	0	0	0	42	0	0	52	5	3	4	1	22	12	11	19	3	26	3	1	5	0	63	20	0	6	9	3	1	4	1	3	3	1	2	0	0	1	0	0	0	2	0	11	0	6	0
........................................................................................................................................ATTGCACATCTCCCGGCCT.............................................................................................................	19	2	288.00	576	0	0	526	9	1	0	0	0	1	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	2	0	3	1	0	0	0	0	4	0	1	4	10	3	4	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATG..........................................................................................................	23	1	254.00	254	9	0	48	22	3	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	4	11	4	8	6	12	2	3	7	17	0	13	10	25	21	1	0	4	5	0	3	0	3	0	0	0	1	3	0	1	0	0	0	0	0	1	3	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAT.........................................................................................................	24	1	200.00	200	0	0	16	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	8	4	10	1	6	7	8	11	12	0	11	13	27	9	1	0	0	3	5	5	1	4	0	0	7	1	2	1	0	1	1	0	0	1	1	2	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCC.............................................................................................................	20	2	186.00	372	13	0	22	286	5	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	1	0	0	2	1	0	1	0	2	2	0	2	4	1	0	0	5	0	6	0	0	3	0	1	1	0	1	0	2	0	0	0	0	0	0	0	0	0	1	6	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATA..........................................................................................................	22	1	181.00	181	0	0	145	11	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	1	0	0	0	1	0	3	0	4	6	1	0	0	0	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTAG...........................................................................................................	22	2	132.00	264	7	0	60	27	2	0	2	0	0	0	0	0	5	1	0	0	0	0	0	0	4	0	0	3	13	5	12	7	4	15	8	11	10	0	5	8	17	10	7	1	2	1	1	1	0	2	1	0	2	0	1	1	0	1	0	0	0	1	4	2	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTG............................................................................................................	21	2	127.50	255	10	0	18	9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	11	3	7	3	1	4	1	1	24	1	16	21	45	27	6	1	4	8	2	3	2	4	1	3	5	0	3	0	0	0	0	0	0	0	1	7	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATACA........................................................................................................	25	2	109.00	218	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	18	33	112	40	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATTC.........................................................................................................	24	1	99.00	99	3	0	22	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	10	6	5	15	1	1	2	0	0	0	0	1	0	5	6	4	0	2	2	0	0	2	3	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAACA.......................................................................................................	26	1	87.00	87	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	7	13	58	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATAAA........................................................................................................	24	2	84.50	169	0	0	150	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	2	0	1	3	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAG.........................................................................................................	24	1	79.00	79	1	0	10	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	1	2	2	2	0	0	1	5	0	5	8	21	10	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATTT.........................................................................................................	24	1	77.00	77	0	0	17	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	9	2	4	5	1	4	6	0	4	2	4	6	0	0	0	0	1	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	1	2	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATAA.........................................................................................................	23	1	74.00	74	0	0	54	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	1	2	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................ATATTGCACATCTCCCGGCCTAT...........................................................................................................	23	1	71.00	71	0	0	45	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	17
..........................................................................................................................................TGCACATCTCCCGGCCTAT...........................................................................................................	19	1	68.00	68	0	0	52	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	1	0	0	0	3	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GCACATCTCCCGGCCTAT...........................................................................................................	18	1	61.00	61	0	0	32	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	5	3	0	1	0	0	2	0	3	3	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TTGCACATCTCCCGGCCTA............................................................................................................	19	2	59.50	119	0	0	61	5	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	2	2	0	2	4	1	0	0	4	0	8	8	8	7	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATATA.......................................................................................................................................................................	23	1	56.00	56	1	0	1	2	0	0	1	0	1	0	0	3	4	1	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	1	0	2	4	0	6	3	9	5	0	0	0	0	1	1	0	0	0	0	0	1	3	1	0	1	0	0	0	0	1	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAAT..........................................................................................................................................................................	20	1	56.00	56	1	0	2	1	2	0	1	4	2	5	5	1	0	1	0	0	0	0	0	0	1	0	0	1	0	1	3	0	4	8	1	6	0	0	1	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................AGGCCGTGCTCTGTGTGAATA.........................................................................................................................................................................	21	1	52.00	52	1	0	3	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	2	1	3	6	1	3	2	2	3	2	1	0	1	1	0	0	1	2	1	1	0	0	2	1	0	0	0	0	0	0	1	0	0	1	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAAG........................................................................................................	25	1	50.00	50	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	1	0	0	0	9	0	5	5	17	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAC.........................................................................................................	24	1	45.00	45	1	0	7	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	6	0	0	0	3	0	0	1	4	3	1	0	2	1	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATT..........................................................................................................	22	1	44.00	44	0	0	34	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................ATATTGCACATCTCCCGGCCT.............................................................................................................	21	2	39.50	79	0	0	23	5	1	0	0	0	1	0	1	0	2	1	0	0	0	0	0	0	0	0	0	3	2	0	2	2	1	0	0	3	3	0	4	1	6	3	0	0	2	1	1	0	3	0	2	0	2	0	1	1	0	0	0	0	0	0	1	1	0	0	0
.........................................................................................................................................TTGCACATCTCCCGGCCT.............................................................................................................	18	2	39.00	78	0	0	52	4	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	2	1	0	1	0	0	0	0	0	3	0	2	2	5	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCG.............................................................................................................	20	2	39.00	78	10	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	9	6	8	1	3	7	0	6	3	0	2	0	2	4	0	0	1	4	1	0	1	0
..........................................................................AGGCCGTGCTCTGTGTGAATATAA......................................................................................................................................................................	24	1	38.00	38	0	0	0	0	0	0	0	0	0	0	1	0	4	1	0	0	0	0	0	0	0	0	0	0	2	1	2	1	0	0	0	0	3	0	3	0	14	4	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTGCTCTGTGTGAATATG.......................................................................................................................................................................	18	1	38.00	38	0	0	1	0	0	0	1	0	7	0	12	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	6	3	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAAT........................................................................................................	25	1	37.00	37	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	0	6	3	7	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATATGA......................................................................................................................................................................	24	1	35.00	35	0	0	0	1	0	1	0	0	0	0	1	1	1	1	0	0	0	0	0	0	1	0	0	0	0	0	3	2	0	0	2	0	2	0	5	1	9	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATAAAA.......................................................................................................	25	2	34.50	69	0	0	63	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATATAAA.....................................................................................................................................................................	25	1	34.00	34	0	0	0	0	0	0	0	0	1	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	4	0	2	1	0	0	0	0	2	0	5	0	11	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCAA.............................................................................................................	20	3	34.00	102	0	0	48	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	4	5	1	0	0	0	0	4	0	5	1	22	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTTC...........................................................................................................	22	2	33.00	66	2	0	38	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	8	2	3	2	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATCCC........................................................................................................	25	1	32.00	32	1	0	19	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	3	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATCC.........................................................................................................	23	1	32.00	32	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTCC...........................................................................................................	22	2	30.00	60	2	0	33	0	5	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	6	0	0	0	0	1	0	0	1	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................ATATTGCACATCTCCCGGCCTA............................................................................................................	22	2	27.50	55	0	0	29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	1	1	0	3	0	2	0	0	0	0	1	0	1	2	0	0	0	0	0	4	0	0	0	0	0	0	0	1	1	0	0	3
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAAC........................................................................................................	25	1	27.00	27	0	0	2	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	2	0	2	0	5	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATC..........................................................................................................	22	1	27.00	27	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCA..............................................................................................................	19	2	24.50	49	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	2	0	0	0	0	0	2	0	4	2	20	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAAACA......................................................................................................	27	2	22.50	45	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	8	19	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATAA........................................................................................................................................................................	22	1	22.00	22	0	0	1	0	0	0	0	0	3	1	0	0	3	1	0	0	0	0	0	0	0	0	0	1	3	0	0	0	1	3	0	1	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATCT.........................................................................................................	24	1	20.00	20	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	2	1	3	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATCCA........................................................................................................	25	2	18.50	37	1	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	4	3	1	1	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TTGCACATCTCCCGGCCTATAA.........................................................................................................	22	1	18.00	18	0	0	6	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	1	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................GGCCGTGCTCTGTGTGAATATG.......................................................................................................................................................................	22	1	18.00	18	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	3	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TTGCACATCTCCCGGCCTATA..........................................................................................................	21	1	18.00	18	0	0	13	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTGC...........................................................................................................	22	2	17.50	35	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	1	0	0	0	0	4	0	1	2	8	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATAACAA......................................................................................................	27	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	13	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAA...........................................................................................................................................................................	19	1	17.00	17	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	4	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTATTG.........................................................................................................	24	1	16.00	16	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	2	0	1	1	0	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATATGAAA....................................................................................................................................................................	26	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	2	0	0	0	0	0	1	0	1	0	4	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTATAAAAA......................................................................................................	26	2	14.00	28	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TAGGCCGTGCTCTGTGTGAATAT........................................................................................................................................................................	23	1	14.00	14	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	2	0	0	0	2	2	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATATGAA.....................................................................................................................................................................	25	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	2	1	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCTAC...........................................................................................................	21	2	13.50	27	0	0	13	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TAGGCCGTGCTCTGTGTGAAT..........................................................................................................................................................................	21	1	13.00	13	1	2	0	1	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCC..............................................................................................................	18	2	12.50	25	0	0	21	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TTGCACATCTCCCGGCCTATAAA........................................................................................................	23	2	12.00	24	0	0	16	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TGCACATCTCCCGGCCTA............................................................................................................	18	2	12.00	24	0	0	14	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AGGCCGTGCTCTGTGTGAATAAA.......................................................................................................................................................................	23	1	12.00	12	0	0	0	0	0	0	0	0	1	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTAAAATAAATTTTCAC--CATA-AATAT---------C--------------GTTTA-AATGTATCCATTTTTAGGCCGTGCTATGTGACAATATGTATTT--AAATT-GTATTT---------------ATCATATTGCACATCTCCCGGCCTACAAGTGTAAATGCACAATTCAACTATGTACATAATTCATAATTCTATGGTATGTCTG-TATGTAAATAGAAATTGTACCGCGGCGTTTTT--GT--------GCACGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................TATTGCACATCTCCCGGCCTAC...........................................................................................................	22	1	116121.00	116121	26280	670	4	3	89146	18
.......................................................................................................................................TATTGCACATCTCCCGGCCTACA..........................................................................................................	23	1	24381.00	24381	3440	215	2	3	20719	2
.......................................................................................................................................TATTGCACATCTCCCGGCCTA............................................................................................................	21	2	17548.50	35097	12031	2076	21	17	20844	108
.......................................................................................................................................TATTGCACATCTCCCGGCCT.............................................................................................................	20	2	8204.50	16409	7412	938	28	44	7799	188
.......................................................................................................................................TATTGCACATCTCCCGGCCTACAA.........................................................................................................	24	1	3514.00	3514	1027	9	0	0	2477	1
........................................................................................................................................ATTGCACATCTCCCGGCCTAC...........................................................................................................	21	1	2836.00	2836	1366	2	0	0	1465	3
.......................................................................................................................................TATTGCACATCTCCCGGCCTAA...........................................................................................................	22	2	1986.00	3972	1546	77	1	1	2345	2
..........................................................................AGGCCGTGCTATGTGACAATATG.......................................................................................................................................................................	23	1	1390.00	1390	495	435	3	5	391	61
..........................................................................AGGCCGTGCTATGTGACAATAT........................................................................................................................................................................	22	1	1146.00	1146	304	386	6	6	342	102
.......................................................................................................................................TATTGCACATCTCCCGGCCC.............................................................................................................	20	2	903.50	1807	3	1	0	0	1803	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACT..........................................................................................................	23	1	882.00	882	150	3	0	0	729	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACC..........................................................................................................	23	1	805.00	805	77	3	0	0	725	0
........................................................................................................................................ATTGCACATCTCCCGGCCTACA..........................................................................................................	22	1	746.00	746	200	2	0	0	544	0
.......................................................................................................................................TATTGCACATCTCCCGGCC..............................................................................................................	19	2	434.50	869	165	12	0	1	689	2
........................................................................................................................................ATTGCACATCTCCCGGCCTA............................................................................................................	20	2	389.50	779	602	5	0	0	168	4
.........................................................................................................................................TTGCACATCTCCCGGCCTAC...........................................................................................................	20	1	315.00	315	77	0	0	0	238	0
........................................................................................................................................ATTGCACATCTCCCGGCCTACC..........................................................................................................	22	1	240.00	240	19	0	0	0	221	0
........................................................................................................................................ATTGCACATCTCCCGGCCT.............................................................................................................	19	2	233.50	467	379	0	1	0	87	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACAAA........................................................................................................	25	2	230.50	461	303	1	0	1	154	2
..........................................................................AGGCCGTGCTATGTGACAATA.........................................................................................................................................................................	21	1	160.00	160	30	45	1	0	71	13
.......................................................................................................................................TATTGCACATCTCCCGGCCTT............................................................................................................	21	2	144.50	289	147	10	0	1	126	5
........................................................................................................................................ATTGCACATCTCCCGGCCTACAA.........................................................................................................	23	1	132.00	132	66	0	0	0	66	0
........................................................................................................................................ATTGCACATCTCCCGGCCTACT..........................................................................................................	22	1	127.00	127	23	0	0	0	104	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTC............................................................................................................	21	2	102.50	205	149	13	0	1	36	6
.......................................................................................................................................TATTGCACATCTCCCGGCCTACG..........................................................................................................	23	1	101.00	101	28	3	0	0	70	0
.......................................................................................................................................TATTGCACATCTCCCGGCCA.............................................................................................................	20	2	81.00	162	117	3	0	1	41	0
.........................................................................................................................................TTGCACATCTCCCGGCCTACA..........................................................................................................	21	1	79.00	79	9	0	0	0	70	0
..........................................................................AGGCCGTGCTATGTGACAATATGA......................................................................................................................................................................	24	1	68.00	68	16	16	1	1	32	2
...........................................................................................................................................GCACATCTCCCGGCCTAC...........................................................................................................	18	1	67.00	67	18	1	0	0	48	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACAT.........................................................................................................	24	1	64.00	64	6	1	0	0	57	0
..........................................................................................................................................TGCACATCTCCCGGCCTAC...........................................................................................................	19	1	64.00	64	23	0	0	0	41	0
..........................................................................AGGCCGTGCTATGTGACAATATA.......................................................................................................................................................................	23	1	62.00	62	11	18	1	0	30	2
.......................................................................................................................................TATTGCACATCTCCCGGCCTAG...........................................................................................................	22	2	53.00	106	64	4	0	0	35	3
........................................................................................................................................ATTGCACATCTCCCGGCCTAA...........................................................................................................	21	2	52.50	105	76	0	0	0	29	0
..........................................................................AGGCCGTGCTATGTGACAATATGT......................................................................................................................................................................	24	1	51.00	51	6	22	0	0	23	0
......................................................................................................................................ATATTGCACATCTCCCGGCCTAC...........................................................................................................	23	1	43.00	43	38	0	0	0	5	0
......................................................................................................................................ATATTGCACATCTCCCGGCCT.............................................................................................................	21	2	42.00	84	22	5	0	1	56	0
..........................................................................AGGCCGTGCTATGTGACAATATAA......................................................................................................................................................................	24	1	42.00	42	19	13	1	0	2	7
..........................................................................AGGCCGTGCTATGTGACAAT..........................................................................................................................................................................	20	1	40.00	40	9	6	0	0	21	4
...........................................................................GGCCGTGCTATGTGACAATATG.......................................................................................................................................................................	22	1	34.00	34	32	0	0	0	2	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACAC.........................................................................................................	24	1	29.00	29	6	0	0	0	23	0
.......................................................................................................................................TATTGCACATCTCCCGGC...............................................................................................................	18	2	28.50	57	40	4	0	0	13	0
.........................................................................................................................................TTGCACATCTCCCGGCCTA............................................................................................................	19	2	27.50	55	34	0	0	0	21	0
..........................................................................AGGCCGTGCTATGTGACAATATGC......................................................................................................................................................................	24	1	25.00	25	1	4	1	0	9	10
.........................................................................................................................................TTGCACATCTCCCGGCCT.............................................................................................................	18	2	23.50	47	24	0	0	0	23	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTG............................................................................................................	21	2	22.00	44	9	2	0	0	33	0
.........................................................................................................................................TTGCACATCTCCCGGCCTACAA.........................................................................................................	22	1	21.00	21	4	0	0	0	17	0
...........................................................................................................................................GCACATCTCCCGGCCTACA..........................................................................................................	19	1	21.00	21	1	0	0	0	20	0
..........................................................................AGGCCGTGCTATGTGACAATAA........................................................................................................................................................................	22	1	21.00	21	7	3	1	0	4	6
...........................................................................GGCCGTGCTATGTGACAATAT........................................................................................................................................................................	21	1	17.00	17	17	0	0	0	0	0
........................................................................................................................................ATTGCACATCTCCCGGCCC.............................................................................................................	19	2	15.50	31	0	0	0	0	31	0
..........................................................................AGGCCGTGCTATGTGACAATAC........................................................................................................................................................................	22	1	15.00	15	0	0	0	0	15	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACAG.........................................................................................................	24	1	14.00	14	4	0	0	0	10	0
..........................................................................AGGCCGTGCTATGTGACAATAAA.......................................................................................................................................................................	23	1	14.00	14	10	0	0	0	4	0
..........................................................................................................................................TGCACATCTCCCGGCCTACA..........................................................................................................	20	1	13.00	13	2	1	0	0	10	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACAAC........................................................................................................	25	1	11.00	11	1	1	0	0	9	0
........................................................................................................................................ATTGCACATCTCCCGGCCTACAAA........................................................................................................	24	2	11.00	22	17	1	0	0	4	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACAAT........................................................................................................	25	1	11.00	11	5	1	0	0	5	0
......................................................................................................................................ATATTGCACATCTCCCGGCCTA............................................................................................................	22	2	10.50	21	12	0	0	0	9	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTACTC.........................................................................................................	24	1	9.00	9	7	0	0	0	2	0
......................................................................................................................................ATATTGCACATCTCCCGGCCTACA..........................................................................................................	24	1	9.00	9	5	0	0	0	4	0
.......................................................................................................................................TATTGCACATCTCCCGGCCTAAC..........................................................................................................	23	2	9.00	18	4	0	0	0	14	0

droWil2

GGTGGGGA----A---A--AA---GAAGGAGTCAATGAC--------------CACAAATTTTCAAACATTCTTTGGACGGACTTG--TCAAATATGTTTGG------A-TATAAAATTCAACAATTGGACAACATATTGATCAAAACCGGGCCAAAAATTGTT---GGAAAATTCTTC----------------------------------AAA------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................TGGACGGACTTG--TCAAATATGT......................................................................................................................................................................	22	1	6851.00	6851	2	735	236	5856	22
........................................................................TTTGGACGGACTTG--TCAAATATGT......................................................................................................................................................................	24	1	647.00	647	5	76	65	500	1
......................................................................................................................................ATATTGATCAAAACCGGGCCA.............................................................................................................	21	1	374.00	374	13	16	21	322	2
..........................................................................TGGACGGACTTG--TCAAATATG.......................................................................................................................................................................	21	1	320.00	320	0	120	62	137	1
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAA.........................................................................................................	24	1	267.00	267	33	50	6	178	0
..........................................................................TGGACGGACTTG--TCAAATATGTT.....................................................................................................................................................................	23	1	226.00	226	0	75	11	140	0
.......................................................................................................................................TATTGATCAAAACCGGGCCA.............................................................................................................	20	1	221.00	221	29	6	28	155	3
........................................................................TTTGGACGGACTTG--TCAAATATG.......................................................................................................................................................................	23	1	178.00	178	1	37	21	119	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAA..........................................................................................................	23	1	155.00	155	24	24	4	103	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAA...........................................................................................................	22	1	140.00	140	9	26	6	99	0
..........................................................................TGGACGGACTTG--TCAAATATGTTAA...................................................................................................................................................................	25	1	134.00	134	0	33	0	101	0
..........................................................................TGGACGGACTTG--TCAAATATGTAA....................................................................................................................................................................	24	1	125.00	125	0	52	0	73	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAA............................................................................................................	21	1	85.00	85	14	16	6	48	1
...........................................................................GGACGGACTTG--TCAAATATGT......................................................................................................................................................................	21	1	78.00	78	0	72	0	6	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAAA........................................................................................................	25	1	75.00	75	3	16	0	56	0
........................................................................TTTGGACGGACTTG--TCAAATAT........................................................................................................................................................................	22	1	71.00	71	1	17	4	49	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAA............................................................................................................	22	1	66.00	66	3	9	2	52	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAAA...........................................................................................................	23	1	64.00	64	6	14	1	43	0
..........................................................................TGGACGGACTTG--TCAAATATGTAAA...................................................................................................................................................................	25	1	63.00	63	0	29	0	34	0
........................................................................TTTGGACGGACTTG--TCAAATA.........................................................................................................................................................................	21	1	53.00	53	9	3	22	19	0
..........................................................................TGGACGGACTTG--TCAAATATGTC.....................................................................................................................................................................	23	1	49.00	49	8	0	22	11	8
..........................................................................TGGACGGACTTG--TCAAATATGTA.....................................................................................................................................................................	23	1	46.00	46	0	13	0	33	0
........................................................................TTTGGACGGACTTG--TCAAAT..........................................................................................................................................................................	20	1	45.00	45	2	2	15	25	1
..........................................................................TGGACGGACTTG--TCAAATATGTTA....................................................................................................................................................................	24	1	44.00	44	0	14	0	30	0
........................................................................TTTGGACGGACTTG--TCAAATATGA......................................................................................................................................................................	24	1	41.00	41	0	1	1	39	0
......................................................................................................................................ATATTGATCAAAACCGGGCC..............................................................................................................	20	1	41.00	41	16	0	4	21	0
.........................................................................TTGGACGGACTTG--TCAAATATGT......................................................................................................................................................................	23	1	40.00	40	0	15	4	21	0
..........................................................................TGGACGGACTTG--TCAAATAT........................................................................................................................................................................	20	1	34.00	34	0	8	8	18	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAAAA.......................................................................................................	26	1	32.00	32	0	8	1	23	0
........................................................................TTTGGACGGACTTG--TCAAATATGTAA....................................................................................................................................................................	26	1	29.00	29	0	7	0	22	0
..........................................................................TGGACGGACTTG--TCAAATATGA......................................................................................................................................................................	22	1	28.00	28	0	5	5	18	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAAAA..........................................................................................................	24	1	26.00	26	0	4	1	21	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAAAAA.........................................................................................................	25	1	23.00	23	2	0	0	21	0
.........................................................................TTGGACGGACTTG--TCAAATATG.......................................................................................................................................................................	22	1	21.00	21	2	9	3	7	0
..........................................................................TGGACGGACTTG--TCAAATATGTTAAA------............................................................................................................................................................	26	1	21.00	21	0	8	0	13	0
........................................................................TTTGGACGGACTTG--TCAAATATGTAAA...................................................................................................................................................................	27	1	19.00	19	0	11	0	8	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAAAAA......................................................................................................	27	1	19.00	19	0	4	1	14	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAC.........................................................................................................	24	1	16.00	16	6	4	0	6	0
.................................................................................................TTTGG------A-TATAAAATTCAACAATTGG.......................................................................................................................................	25	1	15.00	15	0	11	0	4	0
........................................................................TTTGGACGGACTTG--TCAAATATGTA.....................................................................................................................................................................	25	1	14.00	14	0	3	0	11	0
..........................................................................TGGACGGACTTG--TCAAATATGC......................................................................................................................................................................	22	1	12.00	12	0	1	1	10	0
.......................................................................................................................................TATTGATCAAAACCGGGCC..............................................................................................................	19	1	11.00	11	7	1	1	2	0
...........................................................................GGACGGACTTG--TCAAATATG.......................................................................................................................................................................	20	1	11.00	11	0	11	0	0	0
.........................................................................................................................................TTGATCAAAACCGGGCCAAAAAT........................................................................................................	23	1	10.00	10	0	5	0	5	0
......................................................................................................................................ATATTGATCAAAACCGGGC...............................................................................................................	19	1	10.00	10	3	0	0	7	0
........................................................................................................................................ATTGATCAAAACCGGGCCAAAAA.........................................................................................................	23	1	10.00	10	0	6	0	4	0
............................................................................GACGGACTTG--TCAAATATGT......................................................................................................................................................................	20	1	10.00	10	0	10	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATATGTC.....................................................................................................................................................................	25	1	9.00	9	2	0	4	3	0
..................................................................................................TTGG------A-TATAAAATTCAACAATTGGAC.....................................................................................................................................	26	1	9.00	9	8	0	0	1	0
........................................................................TTTGGACGGACTTG--TCAAAA..........................................................................................................................................................................	20	1	8.00	8	1	0	6	1	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAAAAAA........................................................................................................	26	1	8.00	8	0	0	0	8	0
.................................................................................................TTTGG------A-TATAAAATTCAACAATTGGAC.....................................................................................................................................	27	1	8.00	8	5	3	0	0	0
..........................................................................TGGACGGACTTG--TCAAATATGTTC....................................................................................................................................................................	24	1	8.00	8	4	3	1	0	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAT.........................................................................................................	24	1	8.00	8	0	1	1	6	0
.........................................................................................................................................TTGATCAAAACCGGGCCAAAAA.........................................................................................................	22	1	8.00	8	0	5	0	3	0
..........................................................................TGGACGGACTTG--TCAAATATGTCC....................................................................................................................................................................	24	1	7.00	7	0	7	0	0	0
...........................................................................GGACGGACTTG--TCAAATATGTAA....................................................................................................................................................................	23	1	7.00	7	0	7	0	0	0
........................................................................................................................................ATTGATCAAAACCGGGCCAAA...........................................................................................................	21	1	7.00	7	1	4	0	2	0
...........................................................................GGACGGACTTG--TCAAATATGTTAA...................................................................................................................................................................	24	1	6.00	6	0	6	0	0	0
........................................................................................................................................ATTGATCAAAACCGGGCCAAAA..........................................................................................................	22	1	6.00	6	2	3	0	1	0
.........................................................................................................................................TTGATCAAAACCGGGCCAAAAAA........................................................................................................	23	1	6.00	6	0	4	0	2	0
.......................................................................................................................................TATTGATCAAAACCGGGCCT.............................................................................................................	20	1	5.00	5	5	0	0	0	0
...........................................................................GGACGGACTTG--TCAAATATGTAAA...................................................................................................................................................................	24	1	5.00	5	0	5	0	0	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAACA........................................................................................................	25	1	5.00	5	0	2	0	3	0
.......................................................................CTTTGGACGGACTTG--TCAAAT..........................................................................................................................................................................	21	1	5.00	5	0	1	0	4	0
.....................................................................................................................................CATATTGATCAAAACCGGGCCA.............................................................................................................	22	1	5.00	5	0	0	0	5	0
........................................................................TTTGGACGGACTTG--TCAAATAAA.......................................................................................................................................................................	23	1	5.00	5	0	3	1	1	0
......................................................................................................................................ATATTGATCAAAACCGGGCCT.............................................................................................................	21	1	5.00	5	1	0	1	3	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAC..........................................................................................................	23	1	5.00	5	4	1	0	0	0
.........................................................................TTGGACGGACTTG--TCAAATAT........................................................................................................................................................................	21	1	4.00	4	0	1	3	0	0
..........................................................................TGGACGGACTTG--TCAAATATGAAA....................................................................................................................................................................	24	1	4.00	4	0	3	0	1	0
........................................................................................................................................ATTGATCAAAACCGGGCCAAAAAA........................................................................................................	24	1	4.00	4	0	2	0	2	0
...........................................................................GGACGGACTTG--TCAAATATGTT.....................................................................................................................................................................	22	1	4.00	4	0	4	0	0	0
........................................................................TTTGGACGGACTTG--TCAAA...........................................................................................................................................................................	19	1	4.00	4	0	0	1	3	0
........................................................................TTTGGACGGACTTG--TCAAATATGAAA....................................................................................................................................................................	26	1	4.00	4	0	3	0	1	0
.........................................................................................................................................TTGATCAAAACCGGGCCAAA...........................................................................................................	20	1	3.00	3	0	1	0	2	0
..................................................................................................TTGG------A-TATAAAATTCAACAATTGGA......................................................................................................................................	25	1	3.00	3	0	2	0	1	0
.................................................................................................TTTGG------A-TATAAAATTCAACAATTGGA......................................................................................................................................	26	1	3.00	3	0	2	0	1	0
.........................................................................TTGGACGGACTTG--TCAAATATGTC.....................................................................................................................................................................	24	1	3.00	3	0	0	0	1	2
........................................................................TTTGGACGGACTTG--TCAAATATA.......................................................................................................................................................................	23	1	3.00	3	0	1	1	1	0
.........................................................................TTGGACGGACTTG--TCAAATATGTA.....................................................................................................................................................................	24	1	3.00	3	0	0	0	3	0
.........................................................................................................................................TTGATCAAAACCGGGCCAAAA..........................................................................................................	21	1	3.00	3	0	1	0	2	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAT..........................................................................................................	23	1	3.00	3	1	0	0	2	0
.......................................................................................................................................TATTGATCAAAACCGGGCT..............................................................................................................	19	1	3.00	3	3	0	0	0	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAAT........................................................................................................	25	1	3.00	3	1	0	0	2	0
.................................................................................................TTTGG------A-TATAAAATTCAACAATTG........................................................................................................................................	24	1	2.00	2	0	2	0	0	0
.................................................................................................TTTGG------A-TATAAAATTCAACAATTGGACA....................................................................................................................................	28	1	2.00	2	0	2	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATATGTG.....................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
........................................................................................................................................ATTGATCAAAACCGGGCCA.............................................................................................................	19	1	2.00	2	0	1	0	1	0
.....................................................................................................................................CATATTGATCAAAACCGGGC...............................................................................................................	20	1	2.00	2	1	0	0	1	0
........................................................................TTTGGACGGACTTG--TCAAATATGTTTGG------............................................................................................................................................................	28	1	2.00	2	0	1	0	1	0
..........................................................................TGGACGGACTTG--TCAAATATGTG.....................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
.......................................................................CTTTGGACGGACTTG--TCAAAA..........................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
..........................................................................TGGACGGACTTG--TCAAATATGTTAT...................................................................................................................................................................	25	1	2.00	2	0	1	0	1	0
........................................................................TTTGGACGGACTTG--TCAAATATGAA.....................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAAAC.......................................................................................................	26	1	2.00	2	0	0	0	2	0
.......................................................................CTTTGGACGGACTTG--TCAAATA.........................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
........................................................................TTTGGACGGACTTG--TCAAATATT.......................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
.........................................................................TTGGACGGACTTG--TCAAATATGTAAA...................................................................................................................................................................	26	1	2.00	2	0	1	0	1	0
...........................................................................GGACGGACTTG--TCAAATATGTTT....................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0
..........................................................................TGGACGGACTTG--TCAAATAA........................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAAAT..........................................................................................................	24	1	2.00	2	0	0	0	2	0
..........................................................................TGGACGGACTTG--TCAAATATGTTTGG------A-..........................................................................................................................................................	27	1	2.00	2	0	1	1	0	0
..........................................................................TGGACGGACTTG--TCAAATATAA......................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
..................................................................................................TTGG------A-TATAAAATTCAACAATTGGACA....................................................................................................................................	27	1	2.00	2	0	2	0	0	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAAG........................................................................................................	25	1	2.00	2	0	0	0	2	0
..........................................................................TGGACGGACTTG--TCAAATATGTTG....................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0
..........................................................................TGGACGGACTTG--TCAAATATGTCA....................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0
.................................................................................................TTTGG------A-TATAAAATTCAACAATTGGT......................................................................................................................................	26	1	2.00	2	0	0	0	2	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAAT...........................................................................................................	23	1	2.00	2	0	1	0	1	0
..........................................................................TGGACGGACTTG--TCAAATATGTGA....................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0
........................................................................................................................................ATTGATCAAAACCGGGCCAA............................................................................................................	20	1	2.00	2	0	0	0	2	0
.........................................................................................................................................TTGATCAAAACCGGGCCG.............................................................................................................	18	1	1.00	1	1	0	0	0	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAAATAA......................................................................................................	27	1	1.00	1	0	0	0	1	0
..........................................................................TGGACGGACTTG--TCAAATATGAA.....................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAAACAA.......................................................................................................	26	1	1.00	1	0	0	0	1	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAAACC.........................................................................................................	24	1	1.00	1	1	0	0	0	0
...........................................................................GGACGGACTTG--TCAAATATGTTTGG------A-TA........................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATG.........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
........................................................................TTTGGACGGACTTG--TCAAATATGTAG....................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................TTGG------A-TATAAAATTCAACAATTG........................................................................................................................................	23	1	1.00	1	0	1	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATATGTTAT...................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
......................................................................................................................................ATATTGATCAAAACCGGGCT..............................................................................................................	20	1	1.00	1	0	0	0	0	1
.........................................................................TTGGACGGACTTG--TCAAATA.........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..........................................................................TGGACGGACTTG--TCAAATATGG......................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.............................................................................ACGGACTTG--TCAAATATG.......................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATATTA......................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
........................................................................TTTGGACGGACTTG--TCAAATATGG......................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.........................................................................................................................................TTGATCAAAACCGGGCCAAAAATA.......................................................................................................	24	1	1.00	1	0	0	0	1	0
............................................................................GACGGACTTG--TCAAATATGTTA....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
......................................................................................................................................ATATTGATCAAAACCGGGCCAAAAAAA.......................................................................................................	27	1	1.00	1	0	0	0	1	0
........................................................................TTTGGACGGACTTG--TCAAATAA........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.....................................................................................................................................CATATTGATCAAAACCGGGCC..............................................................................................................	21	1	1.00	1	1	0	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATATGTACA...................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATATGTGG....................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.........................................................................................................................................TTGATCAAAACCGGGCCA.............................................................................................................	18	1	1.00	1	1	0	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATATAA......................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
........................................................................TTTGGACGGACTTG--TCAAATAC........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.......................................................................CTTTGGACGGACTTG--TCAAATAG........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.........................................................................TTGGACGGACTTG--TCAAAT..........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TATTGATCAAAACCGGGC...............................................................................................................	18	1	1.00	1	0	1	0	0	0
..................................................................................................TTGG------A-TATAAAATTCAACAATTGG.......................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...........................................................................GGACGGACTTG--TCAAATATGTA.....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...................................................................................................TGG------A-TATAAAATTCAACAATTGG.......................................................................................................................................	23	1	1.00	1	0	1	0	0	0
........................................................................................................................................ATTGATCAAAACCGGGCCAAAAAAA.......................................................................................................	25	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TATTGATCAAAACCGGGCCAT............................................................................................................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................ATATTGATCAAAACCGGG................................................................................................................	18	1	1.00	1	1	0	0	0	0
..........................................................................TGGACGGACTTG--TCAAATATGTTT....................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0

droPer2

TATATACA-----------------------------------------------------------------------------------------T------ACATA-GTTTAA---------------AAAATATTGCACACTTCTCAGACTACAAATGTGAACTGTC----TGGT-----------------------------CTTCAAAAAATAAA------ACATAC-----CACACATGTAT--------GTATGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................TTGCACACTTCTCAGACTACA..........................................................................................................	21	1	577.00	577	57	489	31	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAA.........................................................................................................	22	1	502.00	502	14	479	9	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAAA........................................................................................................	23	1	69.00	69	1	65	3	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTAC...........................................................................................................	20	1	31.00	31	3	25	3	0	0	0
..........................................................................................................................................TGCACACTTCTCAGACTACA..........................................................................................................	20	1	28.00	28	0	28	0	0	0	0
..........................................................................................................................................TGCACACTTCTCAGACTACAA.........................................................................................................	21	1	27.00	27	0	27	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAAAA.......................................................................................................	24	1	21.00	21	0	20	1	0	0	0
.......................................................................................................................................TATTGCACACTTCTCAGACTAC...........................................................................................................	22	1	15.00	15	2	10	3	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAAAAA......................................................................................................	25	1	12.00	12	0	11	1	0	0	0
.......................................................................................................................................TATTGCACACTTCTCAGACTACA..........................................................................................................	23	1	5.00	5	0	4	1	0	0	0
...........................................................................................................................................GCACACTTCTCAGACTACAA.........................................................................................................	20	1	5.00	5	0	5	0	0	0	0
........................................................................................................................................ATTGCACACTTCTCAGACTACA..........................................................................................................	22	1	4.00	4	0	4	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAAAAAA.....................................................................................................	26	1	4.00	4	0	4	0	0	0	0
.......................................................................................................................................TATTGCACACTTCTCAGACTA............................................................................................................	21	1	3.00	3	1	1	1	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTA............................................................................................................	19	1	3.00	3	0	3	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAG.........................................................................................................	22	1	3.00	3	2	1	0	0	0	0
........................................................................................................................................ATTGCACACTTCTCAGACTAC...........................................................................................................	21	1	3.00	3	0	2	1	0	0	0
..........................................................................................................................................TGCACACTTCTCAGACTACAAA........................................................................................................	22	1	3.00	3	0	3	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACG..........................................................................................................	21	1	3.00	3	3	0	0	0	0	0
...........................................................................................................................................GCACACTTCTCAGACTACA..........................................................................................................	19	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................TATTGCACACTTCTCAGACTACAA.........................................................................................................	24	1	2.00	2	0	2	0	0	0	0
..........................................................................................................................................TGCACACTTCTCAGACTAC...........................................................................................................	19	1	2.00	2	0	2	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAC.........................................................................................................	22	1	2.00	2	1	1	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACT.............................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................TATTGCACACTTCTCAGACTACAAAA.......................................................................................................	26	1	2.00	2	0	2	0	0	0	0
..........................................................................................................................................TGCACACTTCTCAGACTACAAAA.......................................................................................................	23	1	2.00	2	0	2	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACTACAAG........................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................ATTGCACACTTCTCAGACTACAAAA.......................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................TGCACACTTCTCAGACTACAAAAAA.....................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................TGCACACTTCTCAGACTACAAAAA......................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................TATTGCACACTTCTCAGACT.............................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..TATACA-----------------------------------------------------------------------------------------T------ACATA-GTTTAA---------------AAAAT................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................ATTGCACACTTCTCAGACTACAA.........................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................TATTGCACACTTCTCAGACTACAAA........................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................TTGCACACTTCTCAGACG.............................................................................................................	18	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................................ACTTCTCAGACTACAAAA.......................................................................................................	18	2	0.50	1	0	1	0	0	0	0

droAna3

AAAGTGCG---AA---A--A------------------T--------------AGCAA-AACATAAACACTTGCAGGACGGGGAGCGTGACAATATATATAT------TTTATAAA---------------CATATATTGCACACCTCCCGGCCTATAAGTGTAAATGTTC----CTAC---------AGGTAAAACT------------TCTAAGGAAAAACTT--------------CATTTTT--GAGAAGCTCAGAATTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................TATTGCACACCTCCCGGCCTAT...........................................................................................................	22	1	128673.00	128673	1956	122854	3853	5	4	1
.......................................................................................................................................TATTGCACACCTCCCGGCCTAC...........................................................................................................	22	1	26620.00	26620	1	26612	7	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTA............................................................................................................	21	1	15798.00	15798	320	14295	1174	3	2	4
.......................................................................................................................................TATTGCACACCTCCCGGCCTATA..........................................................................................................	23	1	13540.00	13540	293	12930	316	0	1	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAA.........................................................................................................	24	1	4483.00	4483	107	4229	147	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCT.............................................................................................................	20	1	3454.00	3454	258	2959	228	5	1	3
.......................................................................................................................................TATTGCACACCTCCCGGCCTATT..........................................................................................................	23	1	1738.00	1738	47	1665	26	0	0	0
........................................................................................................................................ATTGCACACCTCCCGGCCTAT...........................................................................................................	21	1	1643.00	1643	138	1498	7	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAAA........................................................................................................	25	1	1287.00	1287	137	1052	98	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTAA...........................................................................................................	22	1	1139.00	1139	26	1069	44	0	0	0
..........................................................................AGGACGGGGAGCGTGACAATAT........................................................................................................................................................................	22	1	898.00	898	114	736	40	0	7	1
.......................................................................................................................................TATTGCACACCTCCCGGCCC.............................................................................................................	20	1	837.00	837	0	837	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCC..............................................................................................................	19	1	593.00	593	14	575	4	0	0	0
........................................................................................................................................ATTGCACACCTCCCGGCCTAC...........................................................................................................	21	1	345.00	345	0	345	0	0	0	0
..........................................................................AGGACGGGGAGCGTGACAATA.........................................................................................................................................................................	21	1	336.00	336	32	275	19	0	10	0
..........................................................................AGGACGGGGAGCGTGACAAT..........................................................................................................................................................................	20	1	278.00	278	29	220	23	0	6	0
.........................................................................................................................................TTGCACACCTCCCGGCCTAT...........................................................................................................	20	1	273.00	273	14	258	1	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATC..........................................................................................................	23	1	232.00	232	0	227	5	0	0	0
......................................................................................................................................ATATTGCACACCTCCCGGCCTAT...........................................................................................................	23	1	229.00	229	5	219	5	0	0	0
........................................................................................................................................ATTGCACACCTCCCGGCCTATA..........................................................................................................	22	1	206.00	206	25	180	1	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAAAA.......................................................................................................	26	1	185.00	185	51	114	20	0	0	0
..........................................................................AGGACGGGGAGCGTGACAATATA.......................................................................................................................................................................	23	1	172.00	172	49	118	2	0	2	1
........................................................................................................................................ATTGCACACCTCCCGGCCTA............................................................................................................	20	1	145.00	145	24	114	7	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATG..........................................................................................................	23	1	130.00	130	3	121	6	0	0	0
..........................................................................AGGACGGGGAGCGTGACAATATAA......................................................................................................................................................................	24	1	84.00	84	14	68	0	0	2	0
..........................................................................AGGACGGGGAGCGTGACAA...........................................................................................................................................................................	19	1	80.00	80	6	55	16	0	3	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAT.........................................................................................................	24	1	77.00	77	0	76	1	0	0	0
..........................................................................AGGACGGGGAGCGTGACAATAC........................................................................................................................................................................	22	1	61.00	61	0	61	0	0	0	0
..........................................................................AGGACGGGGAGCGTGACA............................................................................................................................................................................	18	1	60.00	60	10	39	11	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTT............................................................................................................	21	1	59.00	59	7	44	8	0	0	0
.........................................................................................................................................TTGCACACCTCCCGGCCTAC...........................................................................................................	20	1	59.00	59	0	59	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAC.........................................................................................................	24	1	59.00	59	0	58	1	0	0	0
..........................................................................AGGACGGGGAGCGTGACAATAA........................................................................................................................................................................	22	1	58.00	58	6	50	1	0	1	0
......................................................................................................................................ATATTGCACACCTCCCGGCCTAC...........................................................................................................	23	1	58.00	58	0	58	0	0	0	0
........................................................................................................................................ATTGCACACCTCCCGGCCTATAA.........................................................................................................	23	1	54.00	54	2	52	0	0	0	0
..........................................................................................................................................TGCACACCTCCCGGCCTAT...........................................................................................................	19	1	46.00	46	0	46	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAAAAA......................................................................................................	27	1	43.00	43	23	16	4	0	0	0
........................................................................................................................................ATTGCACACCTCCCGGCCT.............................................................................................................	19	1	42.00	42	16	26	0	0	0	0
........................................................................................................................................ATTGCACACCTCCCGGCCTATT..........................................................................................................	22	1	40.00	40	2	38	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTGC...........................................................................................................	22	1	40.00	40	0	40	0	0	0	0
......................................................................................................................................ATATTGCACACCTCCCGGCCTA............................................................................................................	22	1	35.00	35	1	33	1	0	0	0
.........................................................................................................................................TTGCACACCTCCCGGCCTATA..........................................................................................................	21	1	34.00	34	0	34	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTAG...........................................................................................................	22	1	34.00	34	7	24	3	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATTT.........................................................................................................	24	1	34.00	34	2	31	0	1	0	0
.......................................................................................................................................TATTGCACACCTCCCGGC...............................................................................................................	18	1	31.00	31	0	24	7	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAG.........................................................................................................	24	1	29.00	29	2	27	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCA.............................................................................................................	20	1	28.00	28	2	22	4	0	0	0
......................................................................................................................................ATATTGCACACCTCCCGGCCT.............................................................................................................	21	1	27.00	27	2	25	0	0	0	0
..........................................................................AGGACGGGGAGCGTGACAAC..........................................................................................................................................................................	20	1	24.00	24	1	23	0	0	0	0
...........................................................................................................................................GCACACCTCCCGGCCTAT...........................................................................................................	18	1	24.00	24	0	22	2	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTC............................................................................................................	21	1	21.00	21	0	9	12	0	0	0
..........................................................................AGGACGGGGAGCGTGACAAA..........................................................................................................................................................................	20	1	21.00	21	0	19	2	0	0	0
......................................................................................................................................ATATTGCACACCTCCCGGCCTATA..........................................................................................................	24	1	20.00	20	1	19	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTG............................................................................................................	21	1	19.00	19	0	19	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAAT........................................................................................................	25	1	17.00	17	1	15	1	0	0	0
..........................................................................AGGACGGGGAGCGTGACAATT.........................................................................................................................................................................	21	1	16.00	16	2	12	1	0	1	0
.........................................................................................................................................TTGCACACCTCCCGGCCTA............................................................................................................	19	1	15.00	15	2	12	1	0	0	0
...........................................................................GGACGGGGAGCGTGACAATAT........................................................................................................................................................................	21	1	14.00	14	14	0	0	0	0	0
.........................................................................................................................................TTGCACACCTCCCGGCCTATAA.........................................................................................................	22	1	14.00	14	0	14	0	0	0	0
........................................................................................................................................ATTGCACACCTCCCGGCCTATAAA........................................................................................................	24	1	13.00	13	3	10	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAAG........................................................................................................	25	1	13.00	13	0	13	0	0	0	0
.......................................................................................................................................TATTGCACACCTCCCGGCCTATAAC........................................................................................................	25	1	13.00	13	1	11	1	0	0	0

droBip1

GAAAAGTGCGCGA---A--A------------------T--------------ATCAA-AACATAAACACTTGCAGGACGGGATGTGTGACAATATTTTAAT------T-ATTAAA---------------CAAATATTGCACACCTCCTGGCCTTTAAATGTAAATGTTT----CTAC-----------------------------TGCCGAAGGAAAAACTT--------------CATTTTC--G--TA-----GCTCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTAAAATATCTGT---GAAATCA----------------------------------------------------------AAAAAATAATT------------------------------------------ATGTAATTTA-------------------------------------------------------------------------------------------------TTTTT--G--GT-----TCTTGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAAGCGC-------------------------------C--------------TGCAAATACACAAGCATTTGCAGGCCGGGTCGCGTGCCAATGTATTGAC---------TTCAG---------------GCTATATTGCACACCTCCCGGCCCATAAATGCAA---------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAAAGT-G-----------------------------AG--------------TGCACGTACACAAACATTTGCAGGTGGGGTTGTGGGCAAATATATTTAT------T-TTTCAA---------------GTTATATTGCACACTTCCCGGCCTTTAAATGT-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droYak3

GTGAAATCATAAA---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026

Head

M043

Female-body

M056

Embryo

V046

Embryo

V052

Head

V058

Head

V120

Male-body

SRR1275488

Male larvae

SRR1275486

Male prepupae

SRR1275484

Male prepupae

GSM1528802

follicle cells

No Reads

dgr_62

scaffold_15245:17564630-17564694 +

Known Ortholog

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.9	-31.9	-31.1