dgr_60

ACACACATATACACGCATAAGATGCCACGAACTTGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTGTATTTTACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACACGTCCAGCGGAGGAGAGTGAATCTAGCGCAGAGAATT *********************************.....((((.(((.((((((((...((((.((((((.(((.(((...))).)))))))))))))...)))))))).))).))))........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
.........................................................................................TTGGTGTTACTTCTTACAGTGA...................................................	22	0	1	11.00	11	11	0
.........................................................................................TTGGTGTTACTTCTTGCAGTGA...................................................	22	1	1	7.00	7	7	0
...........................................................................................GGTGTTACTTCTTACAGTGA...................................................	20	0	1	1.00	1	1	0
.........................................................................................TTGGTGTTACTTCTTGCAGTGAT..................................................	23	2	1	1.00	1	1	0
.........................................................................................TTGGTGTTACTTCTTACAGTGT...................................................	22	1	1	1.00	1	0	1
.........................................................................................TTGGTGTTACTTCTCGCAGTGA...................................................	22	2	1	1.00	1	1	0
.........................................................................................TTGGTGTTCCTTCTTACAGTG....................................................	21	1	1	1.00	1	0	1
.........................................................................................TTGGGGTTACTTCTTACAGTG....................................................	21	1	1	1.00	1	0	1
........................................................................................CTTGGTGTTACTTCTTACAGTGA...................................................	23	0	1	1.00	1	1	0
..........................................................................................TGGTGTTACTTCTTACAGTGA...................................................	21	0	1	1.00	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_14853:994403-994564 -	dgr_60	candidate-rescued	ACACACA----TATACACGCA----------------------------TAAGATGCCACGAA--------------------------------------------CTTGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG----------TATT-TT--ACTCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGCGACGGCCA-------CACGTCCAGC----------------------------------------G----------GAGGAGA---GTGAATC---T---------------------------------AGCG------CAGA---------GAATT
droVir3	scaffold_12928:4279705-4279896 -	dvi-mir-971	Known_mirbase	ACACACA----CACACACGTG---CAACA-------------------------CGTCACA------------------AGCTG--------------------------AAATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC----------CT-C-TC--AACCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGCGACGGCCC--AAGGTCC-----GACCGTAAATCATACATATATATATATATATATAAGTATATAT-ATGCC------------------AGGC---TACAG---------------------------------------TGA------------AAC
droMoj3	scaffold_6328:350081-350217 +	dmo_78	confident	ACAAAAA----TAAG---------------------------AAGAGAAGAAAATATCAGAAATGA---ACGTTG----------------------------------------------CGACCGCTGTAAATTGTAATCATCAAAGCGTC----------TG-C-TA--AATCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGCGCGGCGCTCG--A-------------------------------------------------------------------------------AAC---TACAGT--------------------------------GAAACT---------------AGC
droWil2	scf2_1100000004590:3579515-3579707 -			ACACACA----------------------------------------GAGACACCATTACAGCGCCGA--CGATGTTTTCGTTTCTTG-----------------------AGCGCCGCAATGTCC-------------ACCGTTAAAACGTATTTGAACGTCC--C-AGCGAACGGTTGTGTTTTATTTCTTTCTCTCTCTTTTCAAAATTCGAAAAAACTCCTCGAAAAGAGTTCGAA-GCAG--AAGAAGA-------------------------------------------------GGAAG------------------AAGC---TAAAG---------------------------------------TGAA---------GAAAA
dp5	XL_group3a:1391604-1391818 -	dps-mir-971	Known_mirbase	ACACGAGCACATACACGCGCACAT-GAAAACCCCCAATGCCACC-------ATATATTACGGCTACGCCGCGT-G-TCT--CAGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT----------TTTGTTGGTAGCAGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGGA-GCGT--TTCCACA-------------------------------------------------AGCATCGACGAAAG------------------------------------------------------------TGAA-----------TAC
droPer2	scaffold_52:413253-413451 +	dpe_90	confident	GCGTACA----TGAAAACCC-------------CCAATGCCACC-------ATATATTACGGCTACGCCGCGT-G-TCT--CAGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT----------TTTGTTGGTAGCAGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGGA-GCGT--TTCCACA-------------------------------------------------AGCATCGACGAAAG------------------------------------------------------------TGAA-----------TAC
droAna3	scaffold_13117:3891813-3891975 +	dan_51	confident	-------------------------------------------------------------------------------------------------------------------------CGTTCACTGTAAATTGTAACCATCAAAGCGTT----------TTTTATCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGAGCCAGCTG--GAGCACATATT--------------------------------------------A----------AAAAAAA--AATAA--ATAA-----AAAATAAAAATGTCTTTGTAAAGCCCTTT--AAAAAACG-CGAAAATTTTTGGAATT
droBip1	scf7180000396383:483145-483262 -			-------------------------------------------------------------------------------------------------------------------------CGTTCACTGTAAATTGTAACCATCAAAGCGTT----------TTTTATCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGAGCCAGCTG--GAGCACACATTTAAC----------------------------------------TG---------AAAAAGA---------CTAA----------------------------------AA--------CCTA-----------AAA
droKik1	scf7180000302544:775454-775629 -			AA------------------------------------------GCATAGAAAATATCACGCATACGCCGCGTT---------------CAGAGCGAA-----ATTCCTTGGCTGGCAG--CGCACACTGTAAATTGTAATCATCAAAGCGTT----------TTTC-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGCGCCAGTACACGTACACA--CG--------------------------------------------G----------CAAGAAA-----GAACC---T-------------------------------T--AAA-AAG--TATA-----------TTT
droFic1	scf7180000454050:893066-893214 +			G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490546:934555-934728 -			GCT-------------------------------CACAGGCACCGCGAAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TTTC-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGCCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------
droRho1	scf7180000779914:464151-464332 -			ACAC-----------------------CATCGCTCACAGGCACCGCGAAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGTTCGCTGTAAATTGTAATCATCAAAGCGTT----------TTTT-TCAGAACCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------
droBia1	scf7180000298389:643125-643288 +			AC-------------------------CATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT----------TTTC-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000413998:42837-42952 +			-------------------------------------------------------------------------------------------------------------------------CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAAAAAATAA----------------------------------CCCTTTTG--------CCGA-----------AAA
droEug1	scf7180000409110:1404404-1404605 +			ACACAG---------------------CATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACACA----------------------------------------------G----------AAAGAAA-----A--TA---T--GAAGAAG----------------------------------AAG------------AAC
dm3	chrX:12956016-12956212 +	dme-mir-971	Known_mirbase	TGACAGC----TATACACGCA---CACCATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------
droSim2	x:12305277-12305462 +	dsi_358	confident	G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA-----AC----------------------------------CCCTTTTGAAAAAACC---------------ATT
droSec2	scaffold_21:701176-701361 +	dse_66	confident	G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA-----AC----------------------------------CCCTTTTGAAAAAACC---------------ATT
droYak3	X:7229728-7229892 +	dya_52	confident	G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------
droEre2	scaffold_4690:13914737-13914933 -	der_60	confident	AGACAGC----TACACACGCA---CACCATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

ACACACA----TATACACGCA----------------------------TAAGATGCCACGAA--------------------------------------------CTTGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG----------TATT-TT--ACTCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGCGACGGCCA-------CACGTCCAGC----------------------------------------G----------GAGGAGA---GTGAATC---T---------------------------------AGCG------CAGA---------GAATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	11.00	11	11	0
....................................................................................................................................................................................GGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	20	1	1.00	1	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	1.00	1	0	1
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	1.00	1	1	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	1.00	1	1	0

droVir3

ACACACA----CACACACGTG---CAACA-------------------------CGTCACA------------------AGCTG--------------------------AAATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC----------CT-C-TC--AACCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGCGACGGCCC--AAGGTCC-----GACCGTAAATCATACATATATATATATATATATAAGTATATAT-ATGCC------------------AGGC---TACAG---------------------------------------TGA------------AAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	962.00	962	0	54	164	63	2	0	0	0	0	1	0	0	0	0	78	37	26	83	30	29	0	21	100	0	0	1	0	0	8	2	2	22	1	27	0	0	0	0	0	53	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	4	87	44	13	0	0	0	0	1	1	0	4	0	2	0	1	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	175.00	175	1	3	15	3	0	0	0	0	0	0	0	0	0	0	5	2	7	3	0	2	1	1	7	0	0	0	0	0	7	1	1	14	0	17	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	4	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAAATGTAATCATCAGAGC.....................................................................................................................................................................................................................................................	24	1	44.00	44	1	5	0	9	0	0	0	0	0	0	0	0	0	0	6	2	2	1	1	1	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	35.00	35	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	18.00	18	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGG..................................................................................................................................................................	22	1	13.00	13	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	12.00	12	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAT.................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAAATGTAATCATCAGAG......................................................................................................................................................................................................................................................	23	1	7.00	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	7.00	7	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------.....................................................................................................................................................................	19	1	4.00	4	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAAATGTAATCATCAGA.......................................................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CCGCTGTAAAATGTAATCATCAGAGC.....................................................................................................................................................................................................................................................	26	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TT...................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGC..................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAAA................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGTTACTTCTTACAG---------------------------------TGAAA................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TC...................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TG--------------------------AAATGACGTCACGCCC.............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAC---------------------------------.....................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACAAAAA----TAAG---------------------------AAGAGAAGAAAATATCAGAAATGA---ACGTTG----------------------------------------------CGACCGCTGTAAATTGTAATCATCAAAGCGTC----------TG-C-TA--AATCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGCGCGGCGCTCG--A-------------------------------------------------------------------------------AAC---TACAGT--------------------------------GAAACT---------------AGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	543.00	543	190	51	43	56	189	14
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................	24	1	40.00	40	2	1	1	1	35	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	23.00	23	22	0	0	0	1	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	20.00	20	6	0	0	1	12	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	18.00	18	7	2	2	3	4	0
..........................................................AGAAATGA---ACGTTG----------------------------------------------CGACC.............................................................................................................................................................................................................................................................................	19	1	9.00	9	0	2	1	4	2	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	23	1	8.00	8	1	1	2	0	4	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	8.00	8	0	0	4	3	1	0
..............................................................................................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................	20	1	7.00	7	1	0	3	3	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	3.00	3	2	0	0	0	0	1
.........................................................CAGAAATGA---ACGTTG----------------------------------------------CGACC.............................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	3	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAT.................................................................................................................................................................	23	1	3.00	3	2	1	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	3.00	3	0	0	2	0	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------.....................................................................................................................................................................	19	1	3.00	3	0	0	0	0	3	0
....................................................................................................................................................................................GGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0	0
..............................................................................................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................GCGCGGCGCTCG--A-------------------------------------------------------------------------------AAC---TACAG.........................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAC.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................CGCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
.......................................................ATCAGAAATGA---ACGTTG----------------------------------------------CGACC.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................CGCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGA.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................TGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGATT................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGC..................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0

droWil2

ACACACA----------------------------------------GAGACACCATTACAGCGCCGA--CGATGTTTTCGTTTCTTG-----------------------AGCGCCGCAATGTCC-------------ACCGTTAAAACGTATTTGAACGTCC--C-AGCGAACGGTTGTGTTTTATTTCTTTCTCTCTCTTTTCAAAATTCGAAAAAACTCCTCGAAAAGAGTTCGAA-GCAG--AAGAAGA-------------------------------------------------GGAAG------------------AAGC---TAAAG---------------------------------------TGAA---------GAAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................AA-GCAG--AAGAAGA-------------------------------------------------GGAAG------------------AAGC---T.............................................................	23	1	3.00	3	0	0	0	3	0
.............................................................................................................................................................................................................................................GAA-GCAG--AAGAAGA-------------------------------------------------GGAAG------------------AAGC---..............................................................	23	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................................................AAGAGTTCGAA-GCAG--AAGAAGA-------------------------------------------------............................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................TTGAACGTCC--C-AGCGAACG...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................AGCGAACGGTTGTGTTTT.................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................CGTCC--C-AGCGAACGGTTG.......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................TTCTCTCTCTTTTCAAAATTCG.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................G--AAGAAGA-------------------------------------------------GGAAG------------------AAGC---TAAAG---------------------------------------TG................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................CGAA-GCAG--AAGAAGA-------------------------------------------------GGA.........................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................CC--C-AGCGAACGGTTGTGTTTTA................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................AA-GCAG--AAGAAGA-------------------------------------------------GGAAG------------------AAGC---..............................................................	22	1	1.00	1	0	0	0	1	0
........................................................................................................................................................ATTTGAACGTCC--C-AGCGAACGGTTG.......................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................CGAA-GCAG--AAGAAGA-------------------------------------------------GGAAG------------------A....................................................................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................TATTTGAACGTCC--C-AGCGAACGGTTG.......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................AACGTCC--C-AGCGAACGGTTGTGTTTT.................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
......................................................................................................................................................GTATTTGAACGTCC--C-AGC................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................GTTCGAA-GCAG--AAGAAGA-------------------------------------------------GGA.........................................................................................	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................GAAG------------------AAGC---TAAAG---------------------------------------TGAA---------GA...	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................AG--AAGAAGA-------------------------------------------------GGAAG------------------AAGC---..............................................................	18	4	0.25	1	0	0	0	1	0

dp5

ACACGAGCACATACACGCGCACAT-GAAAACCCCCAATGCCACC-------ATATATTACGGCTACGCCGCGT-G-TCT--CAGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT----------TTTGTTGGTAGCAGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGGA-GCGT--TTCCACA-------------------------------------------------AGCATCGACGAAAG------------------------------------------------------------TGAA-----------TAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	538.00	538	0	203	118	64	109	35	5	0	0	4
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAGC.....................................................................................................................................................................................................................................................	24	1	70.00	70	0	8	18	30	10	4	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	42.00	42	0	4	25	5	6	2	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	24.00	24	0	10	4	1	2	6	1	0	0	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................	25	1	14.00	14	0	2	4	7	1	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAG......................................................................................................................................................................................................................................................	23	1	12.00	12	0	7	0	0	0	5	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	11.00	11	0	0	0	0	3	8	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	10.00	10	0	10	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATGGCCA.........................................................................................................................................................................................................................................................	20	1	8.00	8	0	4	0	0	0	4	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAA.......................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	1	0	5	0	0	0	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	6.00	6	0	3	0	1	0	0	0	0	0	2
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------.....................................................................................................................................................................	19	1	4.00	4	0	0	2	1	0	1	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAA........................................................................................................................................................................................................................................................	21	1	4.00	4	0	1	0	1	0	2	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	22	1	3.00	3	0	1	1	0	1	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAGCC....................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................TGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	18	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.........................................................................................................TCCCTGGACCCCAT--CGCTC.............................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAAA................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------C....................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------.....................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................CTGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGC..................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................CTGTAAATTGTAATGGCCAAAGA.....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TTTCCCTGGACCCCAT--CGCTC.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................GGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGG..................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................TGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................TTT----------TTTGTTGGTAGCAGC.........................................................................................................................................................................................................................	18	2	1.00	2	0	0	2	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAC---------------------------------.....................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GCGTACA----TGAAAACCC-------------CCAATGCCACC-------ATATATTACGGCTACGCCGCGT-G-TCT--CAGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT----------TTTGTTGGTAGCAGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGGA-GCGT--TTCCACA-------------------------------------------------AGCATCGACGAAAG------------------------------------------------------------TGAA-----------TAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	192.00	192	24	23	46	53	42	4
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	19.00	19	0	2	4	9	3	1
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAG......................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	5	4	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................	25	1	9.00	9	0	0	1	2	6	0
..............................................................................................................................GCTGTAAATTGTAATGGCCA.........................................................................................................................................................................................................................................................	20	1	8.00	8	0	2	0	2	4	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAA.......................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	3	4	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	6.00	6	0	1	1	3	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGG..................................................................................................................................................................	22	1	5.00	5	5	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	5.00	5	0	0	0	2	3	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAA........................................................................................................................................................................................................................................................	21	1	4.00	4	0	1	0	0	3	0
........................................................................................................TTCCCTGGACCCCAT--CGCTC.............................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	2	2	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	22	1	3.00	3	0	0	0	2	0	1
......................................................................................................................................................TTT----------TTTGTTGGTAGCAGC.........................................................................................................................................................................................................................	18	2	3.00	6	3	0	0	0	3	0
................................................................................................................................TGTAAATTGTAATGGCCAAAGCT....................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	1	2	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	3.00	3	0	2	0	1	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	21	1	3.00	3	1	0	0	1	1	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAT......................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAAGC.....................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
.........................................................................................................TCCCTGGACCCCAT--CGCTC.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................GCTGTAAATTGTAATGGCCAAT.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACA.......................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................GCTGTAAATTGTAATGGCC..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0

droAna3

-------------------------------------------------------------------------------------------------------------------------CGTTCACTGTAAATTGTAACCATCAAAGCGTT----------TTTTATCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGAGCCAGCTG--GAGCACATATT--------------------------------------------A----------AAAAAAA--AATAA--ATAA-----AAAATAAAAATGTCTTTGTAAAGCCCTTT--AAAAAACG-CGAAAATTTTTGGAATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	223.00	223	18	78	12	10	4	101
..............................................................................................................................ACTGTAAATTGTAACCATCAAAGC.....................................................................................................................................................................................................................................................	24	1	29.00	29	1	15	0	1	0	12
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	26.00	26	1	3	1	1	1	19
..............................................................................................................................ACTGTAAATTGTAACCATCAAAG......................................................................................................................................................................................................................................................	23	1	6.00	6	0	1	0	0	0	5
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	5.00	5	4	0	0	0	0	1
..............................................................................................................................ACTGTAAATTGTAACCATCA.........................................................................................................................................................................................................................................................	20	1	4.00	4	1	0	0	0	0	3
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	3.00	3	1	2	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAAA................................................................................................................................................................	24	1	3.00	3	0	2	0	0	0	1
..............................................................................................................................ACTGTAAATTGTAACCATCAAA.......................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	22	1	3.00	3	0	0	1	1	0	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGC..................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0
......................................................................................................................................................GTT----------TTTTATCAGAGCCGC.........................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	2.00	2	0	0	0	1	0	1
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................ACTGTAAATTGTAACCATCAA........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................ACTGTAAATTGTAACCATCAAAGT.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TA...................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------.....................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................ACTGTAAATTGTAACCATCAAAGCT....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1

droBip1

-------------------------------------------------------------------------------------------------------------------------CGTTCACTGTAAATTGTAACCATCAAAGCGTT----------TTTTATCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGAGCCAGCTG--GAGCACACATTTAAC----------------------------------------TG---------AAAAAGA---------CTAA----------------------------------AA--------CCTA-----------AAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AA------------------------------------------GCATAGAAAATATCACGCATACGCCGCGTT---------------CAGAGCGAA-----ATTCCTTGGCTGGCAG--CGCACACTGTAAATTGTAATCATCAAAGCGTT----------TTTC-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGCGCCAGTACACGTACACA--CG--------------------------------------------G----------CAAGAAA-----GAACC---T-------------------------------T--AAA-AAG--TATA-----------TTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCT-------------------------------CACAGGCACCGCGAAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TTTC-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGCCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACAC-----------------------CATCGCTCACAGGCACCGCGAAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGTTCGCTGTAAATTGTAATCATCAAAGCGTT----------TTTT-TCAGAACCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AC-------------------------CATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT----------TTTC-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------------------------------------------------------------------------------------------------------------CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAAAAAATAA----------------------------------CCCTTTTG--------CCGA-----------AAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACACAG---------------------CATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACACA----------------------------------------------G----------AAAGAAA-----A--TA---T--GAAGAAG----------------------------------AAG------------AAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGACAGC----TATACACGCA---CACCATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	4185.00	4185	0	0	0	0	18	0	0	0	0	18	5	9	1	0	1	0	1	0	8	0	0	0	0	28	0	0	0	0	1	5	117	103	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	11	11	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	25	9	1	1	1	1	0	28	10	7	27	67	2	41	81	8	17	75	102	15	16	358	4	1	0	6	44	0	5	1	52	0	85	2	23	9	29	95	0	49	0	27	44	169	1	48	2	43	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	93	132	0	156	2	0	119	132	6	132	1	168	6	259	30	0	0	0	0	0	407	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	16	0	3	2	4	0	26	1	0	0	1	0	0	0	0	22	17	0	3	14	0	0	0	0	2	8	0	3	0	0	0	1	1	65	0	0	3	0	0	0	0	0	7	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	1	11	13	6	37	1	40	1	1	1	0	0	1	0	0	6	0	0	3	3	0	1	0	0	0	0	12	0	0	0	0	4	0	0	0	2	84	3	1	9	1	0	0	0	7	51	2	0
..............................................................................................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................	20	1	359.00	359	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	1	1	0	3	1	8	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	28	0	16	0	0	3	17	0	20	1	31	0	31	5	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	2	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	22	44	38	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................	24	1	280.00	280	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	21	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	1	0	0	0	16	0	0	0	0	0	1	0	0	1	0	1	0	0	0	1	3	0	1	0	1	2	2	0	5	1	8	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	21	0	13	0	0	4	26	0	18	0	18	2	37	10	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	2	2	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	23	1	229.00	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	8	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	2	7	0	4	2	9	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	12	0	4	0	0	6	15	1	8	1	30	2	38	6	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	3	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	1	5	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................	21	1	174.00	174	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	1	7	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	10	0	13	0	1	6	8	0	6	0	13	0	20	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	4	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................GCTGTAAATTGTAATCATCAAAGG.....................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA-----AC----------------------------------CCCTTTTGAAAAAACC---------------ATT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	285.00	285	52	0	62	7	0	0	0	0	18	13	0	133	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................	24	1	96.00	96	61	1	33	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	23	1	90.00	90	76	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGG..................................................................................................................................................................	22	1	26.00	26	9	0	16	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TTCCGTGGCTGGCAT--CGCTC.............................................................................................................................................................................................................................................................................	20	1	16.00	16	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................	19	1	16.00	16	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0
.......................................................................................................ATTCCGTGGCTGGCAT--CGCTC.............................................................................................................................................................................................................................................................................	21	1	4.00	4	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------.....................................................................................................................................................................	19	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGA.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAA.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................A--------ATTCCGTGGCTGGCAT--CGCTC.............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA-----AC----------------------------------CCCTTTTGAAAAAACC---------------ATT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	177.00	177	6	0	126	45
..............................................................................................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................	20	1	28.00	28	1	1	1	25
..............................................................................................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................	21	1	12.00	12	0	0	0	12
..............................................................................................................................GCTGTAAATTGTAATCATCAAA.......................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	7
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	6.00	6	0	0	5	1
..............................................................................................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	5
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	5.00	5	0	0	5	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................	24	1	5.00	5	1	0	1	3
..............................................................................................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	23	1	3.00	3	1	0	0	2
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	2.00	2	0	0	2	0
........................................................................................................TTCCGTGGCTGGCAT--CGCTC.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.............................................................................................................................CGCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	1.00	1	0	0	0	1
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGG..................................................................................................................................................................	22	1	1.00	1	0	0	1	0
................................................................................................................................................CAAAGCGTT----------TT-C-TCAGGC.............................................................................................................................................................................................................................	18	8	0.13	1	1	0	0	0

droYak3

G---------------------------------------CACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	227.00	227	11	11	138	63	0	2	2	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................	24	1	69.00	69	28	1	39	0	1	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	23	1	36.00	36	29	2	4	1	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................	20	1	10.00	10	0	1	0	0	5	4	0	0	0	0	0
........................................................................................................TTCCGTGGCTGGCAT--CGCTC.............................................................................................................................................................................................................................................................................	20	1	10.00	10	9	0	1	0	0	0	0	0	0	0	0
.......................................................................................................ATTCCGTGGCTGGCAT--CGCTC.............................................................................................................................................................................................................................................................................	21	1	6.00	6	5	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------.....................................................................................................................................................................	19	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................	19	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	4.00	4	1	1	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGG..................................................................................................................................................................	22	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................TCCGTGGCTGGCAT--CGCTC.............................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

AGACAGC----TACACACGCA---CACCATCGCTCACAGGCACCGCGGAGAAAATATCACGCATACGCCGCGTTG-TTTCGCTGCATGTGAGAGA--------ATTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT----------TT-C-TCAGAGCCGCTTGGTGTTACTTCTTACAG---------------------------------TGAGTGTGCCAGTCC--GTACACA------------------------------------------------G----------AAAGAAA---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	22	1	231.00	231	39	45	1	66	1	79	0
..............................................................................................................................GCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................	20	1	45.00	45	0	0	6	0	1	38	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGC.....................................................................................................................................................................................................................................................	24	1	29.00	29	1	12	0	1	1	14	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	23	1	26.00	26	0	1	2	1	0	22	0
..............................................................................................................................GCTGTAAATTGTAATCATCAA........................................................................................................................................................................................................................................................	21	1	22.00	22	0	0	0	0	0	22	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAA.......................................................................................................................................................................................................................................................	22	1	22.00	22	1	0	0	0	0	21	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	21	1	15.00	15	2	4	0	5	0	4	0
...................................................................................................................................................................................TGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	21	1	5.00	5	5	0	0	0	0	0	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	23	1	5.00	5	0	4	0	0	0	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGT..................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAA.................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------T....................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2	0
...............................................................................................................................CTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAGCG....................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGC..................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0	0	0
..............................................................................................................................GCTGTAAATTGTAATCAT...........................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
..............................................................................................................................GCTGTAAATTGTAATCATCAAAA......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGTA.................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................CGCTGTAAATTGTAATCATCA.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................GCTGTAAATTGTAATCATC..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................GCTGTAAATTGTAATCATCG.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................CGCTGTAAATTGTAATCATCAAAG......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................TTCCGTGGCTGGCAT--CGCCC.............................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................TTGGTGTTACTTCTTACAG---------------------------------TGAC.................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................A--------ATTCCGTGGCTGGCAT--CGCCC.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................CTTGGTGTTACTTCTTACAG---------------------------------TG...................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................TGTTACTTCTTACAG---------------------------------TGA..................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0

dgr_60

scaffold_14853:994453-994514 -

Known Ortholog

Canonical miRNA

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.4	-35.4	-35.3