dgr_54

TTCGGTTTGTTCTTTTACAGCAGTGCATCCGGGTGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGTATTTGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCGGAAATCAACTTACTCAAATCTGCTATAAGTTTATTAAA *********************************((((((((((..((((((((.((...(((((((((((............)).)))))))))...)).)))))))))))))....)))))**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
......................................................................................AAAAACTTGACACGTTGAGCTCG...................................................	23	0	1	43.00	43	30	13
.........................................................................................AACTTGACACGTTGAGCTCGT..................................................	21	0	1	12.00	12	6	6
.........................................................................................AACTTGACACGTTGAGCTCGTT.................................................	22	1	1	5.00	5	4	1
........................................................................................AAACTTGACACGTTGAGCTCGT..................................................	22	0	1	5.00	5	3	2
..................................................AGTTCCACTATTCAAGTTTTGA........................................................................................	22	0	1	3.00	3	0	3
......................................................................................AAAAACTTGACACGTTGAGCT.....................................................	21	0	1	2.00	2	2	0
..................................................AGTTCCACTATTCAAGTTTTG.........................................................................................	21	0	1	2.00	2	0	2
......................................................................................AAAAACTTGACACGTTGAGCTCGT..................................................	24	0	1	2.00	2	1	1
.......................................................................................AAAACTTGACACGTTGAGCTCG...................................................	22	0	1	2.00	2	0	2
.........................................................................................AACTTGACACGTTGAGCTCG...................................................	20	0	1	2.00	2	0	2
.........................................................................................AACTTGACACGTTGAGCT.....................................................	18	0	1	1.00	1	0	1
......................................................................................AAAAACTTGACGCGTTGAGCTCG...................................................	23	1	1	1.00	1	1	0
......................................................................................AAAAACTTGACACGTTGAGC......................................................	20	0	1	1.00	1	0	1
......................................................................................AAAAACTTGACACGTTGGGCTCG...................................................	23	1	1	1.00	1	1	0
......................................................................................AAAAACTTGACACGTTGAGCTTG...................................................	23	1	1	1.00	1	1	0
.................................................GAGTTCCACTATTCAAGTTTT..........................................................................................	21	0	1	1.00	1	0	1
..........................................................................................ACTTGACACGTTGAGCTCGT..................................................	20	0	1	1.00	1	0	1
......................................................................................AAAAACTTGACACGTTGAGCTC....................................................	22	0	1	1.00	1	0	1
................................................GAAGTTCCACTATTCAAGTTTTGA........................................................................................	24	2	1	1.00	1	0	1
........................................................................................AAACTTGACACGTTGAGCTCG...................................................	21	0	1	1.00	1	0	1

AAGCCAAACAAGAAAATGTCGTCACGTAGGCCCACAGACGGTGTGAATGCTCAAGGTGATAAGTTCAAAACTCGCATAAACTTTAGTTTTTGAACTGTGCAACTCGAGCACACACGCAACGCCTTTAGTTGAATGAGTTTAGACGATATTCAAATAATTT **********************************((((((((((..((((((((.((...(((((((((((............)).)))))))))...)).)))))))))))))....)))))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
.............................GCCCACAGAATGTGTGAA.................................................................................................................	18	2	2	0.50	1	1	0
....................GTAACGTGGGCCTACAGAC.........................................................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15203:8445730-8445889 +	dgr_54	confident	TTCGGTTTG---TTCTTTT----------------------ACAGCAGTGCATCC-GGG--TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTATTT-GAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCGGAA--A-TCAACTTACTCAAATCTGCTATAAGTTTATTAAA-------------------------
droVir3	scaffold_12928:1264093-1264217 -	dvi-mir-969	Known_mirbase	TGTGGTGTCGCTTT---CA----------------------AGAGCAGC----TC-GCG--CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGCG-G-CA---------------------------------TTCAA-------------------------
droMoj3	scaffold_6473:13724315-13724413 +	dmo_81	confident	TG-------------------------------------------------------------GCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--T--GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGCA----CAAG--------------------------TTCAACAAA-------------------------
droWil2	scf2_1100000004909:12029398-12029479 +	dwi_49	confident	----------------------------------------------------------------CTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTG-----------------------------------------------------------------------
dp5	XL_group3a:1977520-1977609 -	dps-mir-969	Known_mirbase	CA----------TC-----------------------------------T------AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTG-------------------------------------------------------------------------
droPer2	scaffold_11:2701281-2701370 +	dpe_84	confident	CA----------TC-----------------------------------T------AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTG-------------------------------------------------------------------------
droAna3	scaffold_13335:1607996-1608102 -	dan_60	confident	ATGTGTTT-------------------------ATTTTTT---------TTGG-AAAAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTG-------------------------------------------------------------------------
droBip1	scf7180000395454:59915-60063 +			TGTG--------TCTT----G----------TAATTTTTT---------TTGG-AAAAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCA-G-ATACGATCAACATTAAAAAACC-------------TTAAT-------------------TTTATT
droKik1	scf7180000302696:1720101-1720223 +			AA----------GT-----------------------------------G------AAG--ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAG-ACAAAAGCAAC--------------AATCAGTTAATAAAA-------------------------
droFic1	scf7180000453872:337516-337630 -			CC------------------------------------------------------GGT--TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG-G-ACAACTCCAGCTTTCG---------------------CAA-------------------------
droEle1	scf7180000491193:225600-225728 +			CACG---------------GG----------TAATCTCCC--------------AAAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG-G-ACAACTTCAG---------------------TTTAACAGA-------------------------
droRho1	scf7180000779986:498611-498731 -			AGAAGTATG---TTCTTTG--ACGTCGCTGGGAATC-C---------------CCGAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTG-------------------------------------------------------------------------
droBia1	scf7180000302291:42494-42520 -			TC----------AC-----TGAAGTCAGCAACAATC--------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAA-------------------------
droTak1	scf7180000415843:458245-458346 -			TC----------AA------------------------CCTACAGCATCG------AAT--ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTG-------------------------------------------------------------------------
droEug1	scf7180000408176:664506-664637 -			TC----------CC------------------------CC--------------TGAAATCTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG-G-ACTTCATCAGCTT--GAAAGCCTG----------CTTAAA-------------------------
dm3	chrX:18018375-18018479 +	dme-mir-969	Known_mirbase	TTCG---------------GT----------GAATC-C---------------CC-AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------
droSim2	x:17118154-17118250 +	dsi-mir-969	Known_mirbase	AT----------C------------------------C---------------CC-AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------
droSec2	scaffold_8:326582-326678 +	dse_88	confident	AT----------C------------------------C---------------CC-AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------
droYak3	X:16642307-16642477 +	dya_48	confident	TG----------TTC---GGG----------GTATC-C---------------CC-AAA--CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGATG-G-TCTACCGCAATTC--GAAAGACAGTTGTAACTTAATTAAAAAAGTTCCATAGCATGTGTGTTAAT
droEre2	scaffold_4690:8346003-8346113 +	der_63	confident	GTTG------CGTTT---GGG----------AAGTT-C---------------CC-AAA--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TTCGGTTTG---TTCTTTT----------------------ACAGCAGTGCATCC-GGG--TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTATTT-GAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGTTGCGGAA--A-TCAACTTACTCAAATCTGCTATAAGTTTATTAAA-------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................AAAAACTTGACACGTTGAGCTCG...............................................................................	23	1	43.00	43	13	30
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	12.00	12	6	6
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	5.00	5	1	4
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	5.00	5	2	3
..............................................................................AGTTCCACTATTCAAGTTTTGA.......................................................................................................................	22	1	3.00	3	3	0
.....................................................................................................................AAAAACTTGACACGTTGAGCT.................................................................................	21	1	2.00	2	0	2
..............................................................................AGTTCCACTATTCAAGTTTTG........................................................................................................................	21	1	2.00	2	2	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGT..............................................................................	24	1	2.00	2	1	1
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	2.00	2	2	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	2.00	2	2	0
........................................................................................................................AACTTGACACGTTGAGCT.................................................................................	18	1	1.00	1	1	0
.....................................................................................................................AAAAACTTGACACGTTGAGC..................................................................................	20	1	1.00	1	1	0
.............................................................................GAGTTCCACTATTCAAGTTTT.........................................................................................................................	21	1	1.00	1	1	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT..............................................................................	20	1	1.00	1	1	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTC................................................................................	22	1	1.00	1	1	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	1.00	1	1	0

droVir3

TGTGGTGTCGCTTT---CA----------------------AGAGCAGC----TC-GCG--CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGGCG-G-CA---------------------------------TTCAA-------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	262.00	262	6	78	7	1	1	0	2	0	0	2	0	0	0	0	43	6	1	10	10	4	1	14	6	0	0	0	1	1	8	1	1	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	31	7	0	0	0	0	0	0	3	3	0	1	3	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTG........................................................................................................................	21	1	217.00	217	0	2	32	0	0	0	0	0	0	0	0	0	0	0	21	10	8	17	19	10	0	19	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	59	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGA.......................................................................................................................	22	1	210.00	210	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50	27	10	24	18	11	0	9	17	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	110.00	110	0	19	5	1	0	0	0	0	0	0	0	0	0	0	23	10	0	12	6	7	0	8	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	97.00	97	0	19	0	1	0	4	0	0	0	0	0	0	0	0	25	6	2	6	10	2	0	12	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	39.00	39	0	4	0	0	0	0	0	0	0	0	0	0	0	0	16	2	0	1	3	0	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	37.00	37	0	4	2	1	0	0	1	0	0	0	0	0	0	0	8	0	0	3	0	0	2	2	1	0	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	30.00	30	2	2	0	0	0	3	0	0	0	1	0	0	0	0	3	1	0	1	0	0	1	1	0	0	0	0	0	0	3	2	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTT.........................................................................................................................	20	1	16.00	16	0	0	4	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTC................................................................................	21	1	14.00	14	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTTTT.........................................................................................................................	21	1	14.00	14	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	1	1	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGG..............................................................................	21	1	10.00	10	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGAG......................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	7.00	7	0	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GAAAACTTGACACGTTGAGCTCG...............................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT............................................................................	23	1	6.00	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTT..........................................................................................................................	19	1	5.00	5	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTA.............................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTTT..........................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTC.............................................................................	22	1	4.00	4	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGT..............................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC................................................................................	20	1	4.00	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTTCCACTAATCAAGTTTTG........................................................................................................................	20	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTT........................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCC............................................................................	23	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGT.......................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GAAAACTTGACACGTTGAGCT.................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT.............................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAGTCGAAAACTTGACACGTTGAGCT.................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT..............................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCT...............................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCA...............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CTTGACACGTTGAGCTCGTTT............................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CGAGTTCCACTAATCAAGTTT..........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGA..............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GAGCGG--ATTCGAAAGTCG.....................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GTTCCACTAATCAAGTTTTGA.......................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAGTCGAAAACTTGACACGTTGAGC..................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGCT.............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTTTT...........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................G--ATTCGAAAGTCGAAAACTTGA............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTT...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGG..............................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCT...............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCT.................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CGAAAACTTGACACGTTGAGC..................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCG...............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCT.................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAATCAAGTTTTG........................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTT................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCC.................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCA............................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGTC.............................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCT............................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAAA...........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TG-------------------------------------------------------------GCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--T--GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGGCA----CAAG--------------------------TTCAACAAA-------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	260.00	260	78	4	36	50	52	40
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	35.00	35	11	0	2	1	5	16
.........................................................................................................................ACTTGACACGTTGAGCTCGT..............................................................................	20	1	11.00	11	11	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	8.00	8	5	0	2	0	0	1
.....................................................................................................................AAAAACTTGACACGTTGAGCTCG...............................................................................	23	1	8.00	8	2	0	0	5	0	1
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	8.00	8	0	0	2	3	1	2
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	7.00	7	0	0	0	0	7	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	5.00	5	2	0	1	0	2	0
..............................................................................AGTTCCACTAATCAAGTTTTG........................................................................................................................	21	1	5.00	5	2	0	1	2	0	0
..............................................................................AGTTCCACTAATCAAGTTTT.........................................................................................................................	20	1	4.00	4	3	0	0	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGT..............................................................................	24	1	4.00	4	1	0	0	1	0	2
.............................................................................GAGTTCCACTAATCAAGTTTT.........................................................................................................................	21	1	3.00	3	0	1	2	0	0	0
..............................................................................AGTTCCACTAATCAAGTTTTGA.......................................................................................................................	22	1	3.00	3	0	0	0	2	0	1
..............................................................................AGTTCCACTAATCAAGTTT..........................................................................................................................	19	1	2.00	2	0	0	1	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCT.................................................................................	21	1	2.00	2	0	0	1	1	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT.............................................................................	23	1	2.00	2	1	0	0	0	0	1
.............................................................................GAGTTCCACTAATCAAGTTT..........................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTCGC..............................................................................	24	1	1.00	1	0	0	0	0	1	0
...........................................................................GCGAGTTCCACTAATCAAG.............................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................AACTTGACACGTTGAGCTCGG..............................................................................	21	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................AAAAACTTGACACGTTGAG...................................................................................	19	1	1.00	1	0	0	1	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGTT.............................................................................	24	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................AAAAACTTGACACGTTGAGCTC................................................................................	22	1	1.00	1	0	0	0	1	0	0
............................................................................................................................TGACACGTTGAGCTCGTA.............................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCC.................................................................................	18	1	1.00	1	0	0	0	0	1	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	1.00	1	1	0	0	0	0	0

droWil2

----------------------------------------------------------------CTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTG-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	1452.00	1452	1048	12	17	149	226
............................................................................TGAGTTCCACTAAGCAAGTTTT.........................................................................................................................	22	1	118.00	118	4	3	0	3	108
........................................................................................................................AACTTGACACGTTGAGCTCGG..............................................................................	21	1	85.00	85	85	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTT.........................................................................................................................	21	1	63.00	63	1	1	0	12	49
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	57.00	57	48	0	3	0	6
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	49.00	49	46	1	0	0	2
..........................................................................................................................CTTGACACGTTGAGCTCGTCT............................................................................	21	1	31.00	31	31	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	26.00	26	25	1	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	23.00	23	22	0	0	1	0
...........................................................................ATGAGTTCCACTAAGCAAGTTT..........................................................................................................................	22	1	22.00	22	0	1	0	0	21
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	22.00	22	4	1	2	10	5
............................................................................TGAGTTCCACTAAGCAAGTTT..........................................................................................................................	21	1	22.00	22	0	0	0	1	21
...........................................................................ATGAGTTCCACTAAGCAAGTT...........................................................................................................................	21	1	14.00	14	0	0	0	0	14
........................................................................................................................AACTTGACACGTTGAGCTCGTCT............................................................................	23	1	9.00	9	9	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT..........................................................................................................................	20	1	7.00	7	0	0	0	1	6
..........................................................................................................................CTTGACACGTTGAGCTCGTCC............................................................................	21	1	4.00	4	4	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC................................................................................	20	1	4.00	4	4	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	4.00	4	4	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTT...........................................................................................................................	20	1	4.00	4	0	0	0	0	4
.......................................................................................................................AAACTTGACACGTTGAGCTCGG..............................................................................	22	1	3.00	3	3	0	0	0	0
..............................................................................AGTTCCACTAAGCAAGTTTT.........................................................................................................................	20	1	3.00	3	0	0	0	1	2
...........................................................................ATGAGTTCCACTAAGCAAGTTTT.........................................................................................................................	23	1	3.00	3	0	0	0	0	3
.......................................................................................................................AAACTTGACACGTTGAGCTCGC..............................................................................	22	1	3.00	3	3	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTTTTT........................................................................................................................	23	1	3.00	3	0	0	0	0	3
........................................................................................................................AACTTGACACGTTGAGCTC................................................................................	19	1	2.00	2	2	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTTTTG........................................................................................................................	23	1	2.00	2	0	0	0	0	2
.........................................................................................................................ACTTGACACGTTGAGCTCGTCT............................................................................	22	1	1.00	1	1	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGTCC............................................................................	22	1	1.00	1	1	0	0	0	0
............................................................................TGAGTTCCACTAAGCAAG.............................................................................................................................	18	1	1.00	1	0	0	0	0	1
.........................................................................................................................ACTTGACACGTTGAGCTCGT..............................................................................	20	1	1.00	1	0	1	0	0	0
............................................................................TGAGTTCCACTAAGCAAGTTTTA........................................................................................................................	23	1	1.00	1	0	0	0	0	1
..................................................................................................GGGCAT--ATTTCAAAAACAAA...................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................CTTGACACGTTGAGCTCGTCG............................................................................	21	1	1.00	1	1	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTT........................................................................................................................	22	1	1.00	1	0	0	0	0	1
........................................................................................................................AACTTGACACGTTGAGCTCGTCG............................................................................	23	1	1.00	1	1	0	0	0	0

dp5

CA----------TC-----------------------------------T------AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	110.00	110	1	16	10	17	2	55	6	0	1	2
.............................................................................GAGTTCCACCATGCAAGTTTT.........................................................................................................................	21	1	73.00	73	0	17	0	35	0	20	1	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC................................................................................	20	1	28.00	28	2	2	0	14	0	10	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	16.00	16	0	3	0	6	0	7	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGTTT..........................................................................................................................	20	1	11.00	11	0	7	0	3	0	1	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	8.00	8	0	3	0	1	1	3	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	7.00	7	0	1	0	1	1	4	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	5.00	5	0	3	0	2	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	4.00	4	0	1	0	0	0	3	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	4.00	4	0	0	0	4	0	0	0	0	0	0
............................................................................CGAGTTCCACCATGCAAGTTTT.........................................................................................................................	22	1	4.00	4	0	1	0	3	0	0	0	0	0	0
........................................................AGG--AGCCTGTTCTACGTGC..............................................................................................................................................	19	1	3.00	3	0	1	0	0	0	0	0	0	0	2
......................................................................................................................AAAACTTGACACGTTGAGCTCGT..............................................................................	23	1	3.00	3	0	1	0	1	0	1	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCT.................................................................................	19	1	2.00	2	0	0	0	1	0	1	0	0	0	0
..............................................................................AGTTCCACCATGCAAGTTTTG........................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGTTC..........................................................................................................................	20	1	2.00	2	0	0	0	2	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTG.............................................................................	22	1	2.00	2	0	0	0	0	1	1	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA..............................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGC..............................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCG...............................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGTGT............................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................GTTCCACCATGCAAGTTTT.........................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGTTTTG........................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTA.............................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................GAATCCAAAAACTTGACACGTTGAGCTCC...............................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTT................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTC................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

CA----------TC-----------------------------------T------AGG--AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATAT-GAATCCAAAAACTTGACACGTTGAGCTCGTGCGTG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	162.00	162	29	2	3	52	73	3
.............................................................................GAGTTCCACCATGCAAGTTTT.........................................................................................................................	21	1	56.00	56	0	3	0	19	32	2
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	17.00	17	0	1	0	8	8	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	15.00	15	2	0	0	8	5	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	12.00	12	0	0	0	2	9	1
.......................................................................................................................AAACTTGACACGTTGAGCTC................................................................................	20	1	9.00	9	0	0	0	3	6	0
.............................................................................GAGTTCCACCATGCAAGTTT..........................................................................................................................	20	1	7.00	7	0	0	0	2	3	2
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	7.00	7	0	0	0	2	5	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGT..............................................................................	23	1	7.00	7	0	0	0	3	3	1
............................................................................CGAGTTCCACCATGCAAGTTTT.........................................................................................................................	22	1	7.00	7	0	0	0	3	4	0
........................................................................................................................AACTTGACACGTTGAGCTCGTG.............................................................................	22	1	3.00	3	0	0	0	1	2	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	2.00	2	0	0	0	0	2	0
........................................................................................................................AACTTGACACGTTGAGCTC................................................................................	19	1	2.00	2	0	0	0	0	2	0
........................................................................................................................AACTTGACACGTTGAGCTCGG..............................................................................	21	1	2.00	2	2	0	0	0	0	0
.............................................................................GAGTTCCACCATGCAAGT............................................................................................................................	18	1	2.00	2	0	0	0	0	2	0
......................................................................................................................AAAACTTGACACGTTGAGCTC................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................AAACTTGACACGTTGAGCT.................................................................................	19	1	1.00	1	0	0	0	1	0	0
..............................................................................AGTTCCACCATGCAAGTTTTG........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droAna3

ATGTGTTT-------------------------ATTTTTT---------TTGG-AAAAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	153.00	153	14	9	3	80	24	23
.............................................................................GAGTTCCACTAAGCAAGTTTT.........................................................................................................................	21	1	65.00	65	4	0	0	15	0	46
........................................................................................................................AACTTGACACGTTGAGCTCGTC.............................................................................	22	1	22.00	22	2	1	0	8	4	7
............................................................................CGAGTTCCACTAAGCAAGTTTT.........................................................................................................................	22	1	13.00	13	1	0	0	7	0	5
.............................................................................GAGTTCCACTAAGCAAGTTT..........................................................................................................................	20	1	11.00	11	0	0	0	4	0	7
........................................................................................................................AACTTGACACGTTGAGCTCGTCT............................................................................	23	1	8.00	8	1	0	0	6	0	1
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	6.00	6	0	1	1	1	2	1
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	5.00	5	1	0	0	2	2	0
..............................................................................AGTTCCACTAAGCAAGTTTT.........................................................................................................................	20	1	3.00	3	0	0	0	3	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT..............................................................................	20	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	2.00	2	1	0	0	0	1	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	2.00	2	0	1	0	1	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTT.............................................................................	23	1	1.00	1	0	0	0	1	0	0
.......................................................................................................................AAACTTGACACGTTGAG...................................................................................	17	1	1.00	1	0	0	0	1	0	0
..........................................................................................................................CTTGACACGTTGAGCTCGTCT............................................................................	21	1	1.00	1	0	0	0	0	1	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	1.00	1	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTC................................................................................	19	1	1.00	1	0	0	0	1	0	0
............................................................................CGAGTTCCACTAAGCAAGTTT..........................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT............................................................................	23	1	1.00	1	0	0	0	1	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTG........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................CGAGTTCCACTAAGCAAGTTTG.........................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTCA............................................................................	23	1	1.00	1	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA..............................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	1.00	1	0	0	0	1	0	0

droBip1

TGTG--------TCTT----G----------TAATTTTTT---------TTGG-AAAAT--ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGGCA-G-ATACGATCAACATTAAAAAACC-------------TTAAT-------------------TTTATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AA----------GT-----------------------------------G------AAG--ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAG-ACAAAAGCAAC--------------AATCAGTTAATAAAA-------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CC------------------------------------------------------GGT--TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG-G-ACAACTCCAGCTTTCG---------------------CAA-------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACG---------------GG----------TAATCTCCC--------------AAAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG-G-ACAACTTCAG---------------------TTTAACAGA-------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAAGTATG---TTCTTTG--ACGTCGCTGGGAATC-C---------------CCGAAA--TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TC----------AC-----TGAAGTCAGCAACAATC--------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAA-------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TC----------AA------------------------CCTACAGCATCG------AAT--ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TC----------CC------------------------CC--------------TGAAATCTCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG-G-ACTTCATCAGCTT--GAAAGCCTG----------CTTAAA-------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCG---------------GT----------GAATC-C---------------CC-AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................GAGTTCCACTAAGCAAGTTTT.........................................................................................................................	21	1	1843.00	1843	0	0	0	0	10	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	3	2	76	105	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	44	0	0	83	5	14	1	0	0	1	217	1	0	0	1	0	0	0	0	0	0	0	0	0	0	16	10	0	2	0	4	8	20	0	41	2	28	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	115	111	0	83	0	0	32	118	2	83	5	79	0	112	0	0	0	0	0	0	107	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	28	3	0	0	0	9	7	0	4	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	23	50	24	43	0	0	6	1	0	0	0	0	0	0	4	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	2	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	1512.00	1512	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	8	6	10	9	1	1	0	1	0	0	0	0	0	1	1	0	1	1	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	3	0	5	0	4	3	4	0	6	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	2	3	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	31	0	33	0	0	9	11	6	16	11	15	5	29	52	0	0	0	0	0	46	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	11	29	9	17	2	6	6	23	0	4	4	7	1	0	0	0	0	0	0	0	21	18	0	0	2	0	1	1	0	2	6	0	2	0	0	0	0	3	4	3	0	5	0	1	1	0	0	0	0	2	6	0	0	0	1	3	0	11	1	3	0	2	0	0	0	1	1	45	28	12	39	34	130	84	43	6	3	0	1	0	7	19	0	15	58	0	0	1	6	2	1	2	2	1	1	0	5	6	0	4	0	9	178	58	5	12	7	6	0	0	1	15	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT..........................................................................................................................	20	1	219.00	219	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	3	0	0	0	7	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	13	0	6	0	0	4	9	0	11	1	11	0	6	2	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	11	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	9	22	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	54.00	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	1	1	0	0	1	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	2	1	5	0	0	0	0	3	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	49.00	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	5	4	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	5	2	0	1	0	0	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTATC...........................................................................	24	1	38.00	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AGTTCCACTAAGCAAGTTTT.........................................................................................................................	20	1	37.00	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	0	0	0	1	2	0	4	0	3	0	2	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0
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........................................................................................................................AACTTGACACGTTGAGCTCGTTT............................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA..............................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTG.........................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAT............................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTA............................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTATC......................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACACGTTGAGCTCGTTCC...........................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTGATC.....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AT----------C------------------------C---------------CC-AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	913.00	913	598	11	250	5	0	5	1	3	4	8	2	4	3	19	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGG..............................................................................	21	1	104.00	104	54	2	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	58.00	58	39	3	13	0	0	2	0	0	0	0	0	0	0	1	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTT.........................................................................................................................	21	1	51.00	51	2	0	0	1	1	46	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	36.00	36	26	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT..........................................................................................................................	20	1	33.00	33	1	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGT............................................................................................................................	18	1	30.00	30	0	0	0	0	1	29	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	5.00	5	3	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTT...........................................................................................................................	19	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT...............................................................................................	26	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC................................................................................	19	1	3.00	3	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTC................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAA............................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTC........................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTTGAGATC--GTTTTAAAA........................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAA....................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT............................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTC................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTAAA...........................................................................	24	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AT----------C------------------------C---------------CC-AAG--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	114.00	114	11	23	35	45
.............................................................................GAGTTCCACTAAGCAAGTTTT.........................................................................................................................	21	1	85.00	85	0	2	0	83
.............................................................................GAGTTCCACTAAGCAAGTTT..........................................................................................................................	20	1	33.00	33	0	1	0	32
..............................................................................AGTTCCACTAAGCAAGTTTT.........................................................................................................................	20	1	2.00	2	0	0	0	2
..................................................................................................GAGATC--GTTTTAAAAACAAA...................................................................................................	20	1	2.00	2	0	0	2	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	2.00	2	0	0	2	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	2.00	2	0	0	1	1
........................................................................................................................AACTTGACACGTTGAGCTCGTA.............................................................................	22	1	1.00	1	0	0	0	1
...........................................................................................................................TTGACACGTTGAGCTCGTTCGTGT........................................................................	24	1	1.00	1	0	0	0	1
...........................................................................................................................TTGACACGTTGAGCTCGTTCGT..........................................................................	22	1	1.00	1	0	0	0	1
............................................................................CGAGTTCCACTAAGCAAGTT...........................................................................................................................	20	1	1.00	1	0	0	0	1
..............................................................................AGTTCCACTAAGCAAGTTT..........................................................................................................................	19	1	1.00	1	0	0	0	1
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	1.00	1	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGT............................................................................................................................	18	1	1.00	1	0	0	0	1

droYak3

TG----------TTC---GGG----------GTATC-C---------------CC-AAA--CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGATG-G-TCTACCGCAATTC--GAAAGACAGTTGTAACTTAATTAAAAAAGTTCCATAGCATGTGTGTTAAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	393.00	393	143	17	100	6	39	76	12	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTT.........................................................................................................................	21	1	61.00	61	1	2	1	0	15	42	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	27.00	27	4	0	22	0	0	1	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGG..............................................................................	21	1	21.00	21	21	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	19.00	19	9	1	8	0	1	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	9.00	9	2	1	3	1	0	1	1	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTT..........................................................................................................................	20	1	9.00	9	0	0	0	0	1	8	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	7.00	7	3	0	2	0	1	1	0	0	0	0	0
.............................................................................................................................................TTGTGGGATG-G-TCTACCGC.........................................................	19	1	5.00	5	0	0	0	0	2	3	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT...............................................................................................	26	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT..............................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGC..............................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAA...................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTC................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAG...................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAAC................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAA....................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................CGAGTTCCACTAAGCAAGTTTT.........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................TTGTGGGATG-G-TCTACCGCA........................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTA........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTT........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...............................................................................GTTCCACTAAGCAAGTTTT.........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTC................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACA.....................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTA............................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGTAAA...........................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGTTT............................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................GAGATC--GTTTTAAAAACAAA...................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTG.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

GTTG------CGTTT---GGG----------AAGTT-C---------------CC-AAA--TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATG--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................AACTTGACACGTTGAGCTCGT..............................................................................	21	1	299.00	299	27	10	26	5	82	149	0
.............................................................................GAGTTCCACTAAGCAAGTTTT.........................................................................................................................	21	1	217.00	217	6	0	9	0	5	197	0
.............................................................................GAGTTCCACTAAGCAAGTTT..........................................................................................................................	20	1	44.00	44	0	0	3	0	1	40	0
........................................................................................................................AACTTGACACGTTGAGCTCG...............................................................................	20	1	11.00	11	1	0	0	0	4	6	0
..............................................................................AGTTCCACTAAGCAAGTTTT.........................................................................................................................	20	1	8.00	8	0	0	2	0	0	6	0
........................................................................................................................AACTTGACACGTTGAGCTCGTT.............................................................................	22	1	7.00	7	1	0	2	0	2	2	0
........................................................................................................................AACTTGACACGTTGAGCTCGC..............................................................................	21	1	3.00	3	0	3	0	0	0	0	0
.......................................................................................................................AAACTTGACACGTTGAGCTCGT..............................................................................	22	1	3.00	3	0	0	0	0	1	2	0
................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT...............................................................................................	26	1	3.00	3	0	0	0	0	0	3	0
........................................................................................................................AACTTGACACGTTGAGCTCGTA.............................................................................	22	1	2.00	2	0	0	1	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGTTTTA........................................................................................................................	22	1	2.00	2	0	0	1	0	0	1	0
.......................................................................................................................AAACTTGACACGTTGAGCTCG...............................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................AAAACTTGACACGTTGAGCTCG...............................................................................	22	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................AAAACTTGACACGTTGAGCTCGT..............................................................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................AACTTGACACGTTGAGCTCGTC.............................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................AACTTGACACGTTGAGCTCGA..............................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.............................................................................GAGTTCCACTAAGCAAGTTTTG........................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................ACTTGACACGTTGAGCTCGT..............................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................TTGAGATC--GTTTTAAAAACAAA...................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGTT...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................................................GAGTTCCACTAAGCAAGTTTTT........................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................GAGATC--GTTTTAAAAACAAA...................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

dgr_54

scaffold_15203:8445780-8445839 +

Known Ortholog

Canonical miRNA

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.0	-31.0	-31.0