ID:

dgr_414

 Coordinate:

scaffold_15203:5488782-5488932 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dgri_GLEANR_12517:17]; CDS [Dgri\GH12594-cds]; intron [Dgri\GH12594-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
CT-richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACACGCACACCAATAGCAAAACAAAAAACCAAAACAAAAAAAGGAAAAGCAATTAACCGAAAAACAACAACAACAACAAGAACAACAAGAACAAAATGAAATGAAATGCTCAATTCAATCATTTAGTGCATTTATCTCTCTCTTTCTCTCCTCTCTGTGTGTATCTCTCTCTCCTCTCCAATTATTATTATTGTTTAACAGATCAACGGCGGAGCCGGCAGCGCAGCAACTGCAACGTTTAATATCAGCCG
**************************************************......................(((...(((......((((......((.(((((.(((..................)))))))).)).....))))......)))...))).......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M041
female body
.....................................................................................................................................................................................................GCGGGTCAACGGCGGAGCC................................... 19 3 8 0.13 1 1

Anti-sense strand reads

TGTGCGTGTGGTTATCGTTTTGTTTTTTGGTTTTGTTTTTTTCCTTTTCGTTAATTGGCTTTTTGTTGTTGTTGTTGTTCTTGTTGTTCTTGTTTTACTTTACTTTACGAGTTAAGTTAGTAAATCACGTAAATAGAGAGAGAAAGAGAGGAGAGACACACATAGAGAGAGAGGAGAGGTTAATAATAATAACAAATTGTCTAGTTGCCGCCTCGGCCGTCGCGTCGTTGACGTTGCAAATTATAGTCGGC
**************************************************......................(((...(((......((((......((.(((((.(((..................)))))))).)).....))))......)))...))).......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V109
male body
...........................................................................................................................................................................................................................TCGCGTCGTTGTGGTTGCACA........... 21 3 11 0.09 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droGri2 scaffold_15203:5488732-5488982 + dgr_414 ACACGCACACCAA------------------------------------------TAGCAAAACAAAA--AACC-----------------------------------------AA------AACAAAAAAAGG------AA------------------------AAGCAATTAACCGAAAAACAACAACAA-----C----------AACAAG----------AAC---AACAAGAACAA-------------------------A------------------------------------------------------AT--GAAA------T--GAAATGCTCAATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTCTTTCTCTC---------------------------------------------------------------------CTCT---CTGTGTGTATCT--------------CTCTC--TC---CT---------CTC---CA---ATTATTAT----TATTGTTTA-------------------------------ACAGATCAACGGCGGAGCC-------------------------G--------------GCAGCGCAGCA---ACTGCAACGTTTAATATCAGCCG
droVir3 scaffold_13042:2675496-2675750 + dvi_14447 ACACACACACCCA-----------------TGCACACGTGCTCG-CAC---AAGAAC--------------------------------AA------------------------------------------------------------------------------------------G-A------ACAAGAAGAAGAAGAACAACA-----------------------------------------------------------------------------------------------------------------------ATTGATTTGT----TGCTCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTCTTTCTCTC----------CTTCTCT-----------------------------------------------------------CTGTGTGTATCT--------------CTCTC-------CTCTCCCTT-------------ATTATTGT----TTATTTA-------CAATT-----------------GA--CCAGATCAACGGCGGAGCCAGCGGCGCCAATGCGAATGCTAATGC---GAG-CGCAAATGCAGCGCAGCAGCAGCAGCAG-------CAGCAGCAG
droMoj3 scaffold_6328:925605-925841 - ATATGTACATATA-TATA--------TATATGCACACGTGCTCG-CAC---AAGAACCAA---CAAAAAAG----------------AAAA------------------------------------------------------------------------------------------G-A------AGAAGAAGAAGA----------------------------TG---AACAACAA-------------------------A------------------------------------------------------TTGTACAATTGATATGT----TGCTCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTCTTTCTCTC----------CTTCTCT-----------------------------------------------------------CTGTGTGTATCT--------------CTC----------TCTCCCC----TCCC-TT---ATTATTGT----TTATTTA-------CAATT-----------------GA--CCAGATCAACGGCGGAGCC-------------------------------AATGCGA------------------------------ACGCTAATG
droWil2 scf2_1100000004909:1909175-1909465 + ACACAGACACTCTAAAAAGCAAACCAAATA---------------CAC---AA--------AACAAACCAAA---C-------------------AAA--------AAAAAA-AAA-----------------------------------------------------------------A-A------AAAC----------------AATTTTAAA-------AAC---AACCGAAACG--------------------------A------------------------------------------------------ATGTTG------------AAAT--TCCATTCAAT-C-----------------------------------------------ATTTTAGTGCATTTAT------CTATCTATCAATTTCTC------TCTTTCTCTCTC----------TC----TCTG--------------TCTGTCTCTCTCACCTTATG--TTGTGTGTATCT---------------TCTC--TTTCTCTCT--C--GTCTCCA-TATTGTTTATTGT----TTAATTATATTAT----TT-----------------GA--CCAGATCAATGGCAGTGGC-------------------------A---ACGTTG--GCGGCGCCGCAGCG---ACTGCAA---------------C
dp5 XL_group1a:3329726-3330028 + ACAG-CA----------------------------------------CAAA--AATAAACCCACAAAAGAA--------------------------------AAACC-------------ACAA------GCAG------AACAAG---------ATGTAGAAGAAGACGAA------------------------GAAGAAG--------------------AAAGC---AAAAGAAACAA-------------------------A---------------------------------------------A--T-GATGATC-----------TGTGATCCGATCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTTTCTCTCTCTCTCTC----TCTCTCTCTCTCTG----------T--------C----------TC--TCTT--TCTCTCCCACTAT---GTGTGTGTATCT--------------CTCTCTTTCTCTCTCTCTCGTGTCTCCC--C---ATTATGAT----TACCGTTTATTTCCGGATT---------A-------TC--TCAGATCAACGGCGGAGCC-------------------------G---------GCAATGCGG-----CG---AATGCAA-------GCGCAGCCG
droPer2 scaffold_820:5038-5245 - ACCCACAAGACAA-------------------------------------A--GACAAAACAAAAC-------T-----------------------------AAAAC-------------ATAT------ACGA------AACAAC---------TACAAGAGAAAAACCAA------------------------ACA--------------------AACAA---ACAA---ACCAAAAA---CAAA-------AAAATAAAT-------------AACA----------------A-----------------------------------------------CAAAGTCAAT-T-----------------------------------------------ATA-CAGAAAAGTCACTATTGTCTCTTTTTTTCTTCT----------CTTCCCT-----------------------------------------------------------CTATATGA-----------------------------------------------------------------------------------------------------CCGTGT-TTAGGTGGCAGC----------------------------A---C--------CGGTGGT-----G---GCAGCCT-------ACTCGGCGG
droAna3 scaffold_13117:3452839-3453173 + AAACCGAAAA-------------------------------------------------------------TTTTC-------------------AAAAAGAAAACCAACAA-AAGAAACAA---CAA------G------AA--ACTGTATCAACACCGAAAG-------------------A------AAAAAAAAAAGA----------------------------TG---AAA-------------------A-------A--T-----------ACG----------------TG----------AAAATTTCGAGGATGTGAAA---------GAGAAG-GCTATTCAAT-C-----------------------------------------------ATA-TAGTGCATTTAT------CTTTCTATCTCTCTCTC----TCTCTGTCT--GTT--TCTTTCTATC----T--CT----------A--TCTC--TCTCTATG---AT---GTGTGTGT-TCTCTCTCTATCTATCTATCTCTCTTTCTCTCTCCCTTGTCTCCCAAA---ATTATTGTTTAT-TGTATATATTTTGCAATT-----------------GC--CCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCACCGCAG-------------------CAACAGTCG
droBip1 scf7180000395895:99334-99688 - ACAAACAGAA-----------------------------------------------------------AATTTTC-------------------AAAAAGAAAAACA-------AC------AACAA------G------AACAAC---------ACCCAAAGAAAAATCAA------------------------CAAAAAG--------------------AAAAG---AAAAGAA--------------------------A-------------AGCG----------------AG----------AAAA--TCGAGGATGTGAAA---------GAGAAG-GCTATTCAAT-C-----------------------------------------------ATA-TAGTGCATTTAT------CTTTCTATCTCTCTCTC----TCTCTCTCTCTCTGTC------TGT------TTCTTTCTCTATCTCTATCT------ATCTGTCTATGATGTGTGTGT-TCTCTCTCTCTCTATCTATCTATCTCTCTCTCTCCCTTGTCTCCCAAA---ATTATTGTTTAT-TGTATATATTTTGCAATT-----------------GC--CCAGATCAACGGCAGCGGC-------------------------G---GAGTTGCAACTGCACCGCAGCA---ACAACAAC----AACAACAATCG
droKik1 scf7180000302510:466548-466800 - ACAGGTACACTAC-----------------------------CAGCAG---CAACAAGATGCCCAG----------------------------------------CA-------------------GCAACAGC------AGCAAC---------TCCACATGGAGCAACAG--------C-A------ACAA----------------CAACAACA------A---C---AGCAGCAGCAG---CAACAAC----A-------A--T-----------ATG----------------TG----------CAACATCAG--------------------CAGCCC-GCCATTCAGCATACGCAGCAGATTTACTACACCTCAGAGCAAGTA------CTACAGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCATTGTCCAGCACATGCAGCAGC---AAAAGAA---GCAGC--A-------------------------G---GTGCTGCAACAACAGC-----A---GCAGCAA-------TACCAGCAG
droFic1 scf7180000453882:297687-297930 + ACACACACACC---------------------------CACTCGGCAC---AAAATAGAACAACAGATGAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAA------------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTCTCTCTCTA----------TTTC--TCAA----------TC--TCTC--TATCTTTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491023:222573-222839 + ACAAACACACG---------------------CACACCCACTCGGCAC---AATATAGAACAACAGAAGAAATTGCTAACAAAAAAAAAAAGAAAAAA--------AAAAAA-CCG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAA------------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTTTCTC----TGTCTTTCTCTCTT----------TC----TCCC----------TA--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779985:139873-140133 - ATACGCACACCAA-CACAGCTCACAAAACACACACACCCACTCGGCAC---AAAATAGAA---CAGAAAAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------A-A------ACTT----------------AACTCGAA------------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCT--C----TGTCTTTCTCTCTA----------TC----T--CT----------C--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000298389:112895-113145 + ACCCATACACAAA-----------------CACCCACCCACTCGGCAC---AAAATAGAACAACAGAAGAAATTGC-------------------AAA--------AATAAA-CGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAA-----------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTTTCTCTCTA----------TC----T--CT----------C--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414425:215252-215532 + ACACTCCCA-------------------------------CTCGGCAC---AAAATAGAACAACAGAAGAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAA-----------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCT--C----TGTCTTTCTCTCTA----------TC----TCTC----------TC--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--CCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGC----------------------------ACCG
droEug1 scf7180000409110:928799-929098 + GCA--------------------------------------------CAAA--AATAGAACAACAAAAGAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------AAA------ACAA----------------AACTCGTAAA--TAA---AAAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTTTC----TGTCTTTCTTTCTA----------TCTCTCTCTC----------TC--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--TCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGCACCGCA---ACAGCAA-------CAGCAGCAG
dm3 chrX:12542334-12542608 + A-------------------------------------------------------------ACAGA-GAAATTGC-------------------AAAAA------AAAAAA-CGA-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAAAAGTAA---CCAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTCTCTCTGTCTTCCTCTCTA----------TC----TATC----------TC--TCTC--TATCTCTGACTAT---GTGTGTGAATCT--------------CTCTA--TCTCTCTCTCCCATGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--TCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGCA----------------------CCGCAGCAG
droSim2 x:11898564-11898844 + GCA--------------------------------------------CAAA--AATAGAACAACAGA-GAAATTGC-------------------AAA--------AAAAAACCGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAAAAGTAA---CCAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTTTCTCTCTATC------TAT------CTCT----------C--TCTC--TATCTCTGACTAT---GTGTGTGAATCT--------------CTCTA--TCTCTCTCTCCCATGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--TCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGC----------------------------ACCG
droSec2 scaffold_21:296738-296985 + ACACC---------------------------------CACTCGGCACAAA--AATAGAACAACAGA-GAAATTGC-------------------AAA--------AAAAAAACGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGATAAAGTAA---CCAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTTTCTCTCTATC------TAT------CTCT----------C--TCTC--TATCTCTGACTAT---GTGTGTGAATCT--------------CTCTA--TCTCTCTCTCCCATGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------
droYak3 3R:2187932-2188142 - TCGCCCACAACAA------------------------------------------TAACA------------------------------------ATAT------TAATAA-CAATAACAA-----------------------------------------------------------C-A------ACAA----------------TAATAATA------A---CAAT---AACAACAA---CGATGTCGAGAA-------G--T-----------ACG----------------ATCCCATTGCCAAATACTTTGCCAACACGCAG---------CAAAAG-C-TA--------------------------------------------------T--------------------------C-------TCCTGTC---------------------------------------------------------------------ATCG---CTGCGAAAAGCT--------------CAC------------------------------------GGA----TTCTCTGCG----AGAATT-----------------GC--TGTGGCGAGAGGCAGC----------------------------AACAA-GTT----------------G---GCAGCTC-------TATGGACCG
droEre2 scaffold_4690:14226034-14226280 + CAGTAGCAGCA------------------------------------ACAA--AAG-------------CAATCAC-------------------AACAA----------------------------CAAAAGTAACAACAACAAC---------CACAACAGCAACAACAC------------------------ATT--------------------------AAC---AACAACAACAAAAGCAAA-------CAAACCAATCAATTCTGCGGCCAACAACAAGTGTTTAAGCCAAA----------AGAG--TTCGGCATGAAATG---------GAAGCA-GCTATACGC------------------TCCACTTCAGTGCAGGTCGGTGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGCCCA-----------------------------------------------------------CAAACAACAACAGCAGC-------------------------A---GCA--G---CAGCAG-----CA---ACAACAA-------TAACAACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
ACACGCACACCAA------------------------------------------TAGCAAAACAAAA--AACC-----------------------------------------AA------AACAAAAAAAGG------AA------------------------AAGCAATTAACCGAAAAACAACAACAA-----C----------AACAAG----------AAC---AACAAGAACAA-------------------------A------------------------------------------------------AT--GAAA------T--GAAATGCTCAATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTCTTTCTCTC---------------------------------------------------------------------CTCT---CTGTGTGTATCT--------------CTCTC--TC---CT---------CTC---CA---ATTATTAT----TATTGTTTA-------------------------------ACAGATCAACGGCGGAGCC-------------------------G--------------GCAGCGCAGCA---ACTGCAACGTTTAATATCAGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droVir3
ACACACACACCCA-----------------TGCACACGTGCTCG-CAC---AAGAAC--------------------------------AA------------------------------------------------------------------------------------------G-A------ACAAGAAGAAGAAGAACAACA-----------------------------------------------------------------------------------------------------------------------ATTGATTTGT----TGCTCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTCTTTCTCTC----------CTTCTCT-----------------------------------------------------------CTGTGTGTATCT--------------CTCTC-------CTCTCCCTT-------------ATTATTGT----TTATTTA-------CAATT-----------------GA--CCAGATCAACGGCGGAGCCAGCGGCGCCAATGCGAATGCTAATGC---GAG-CGCAAATGCAGCGCAGCAGCAGCAGCAG-------CAGCAGCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGCAGCGCAGCAGCAGCA....................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GAG-CGCAAATGCAGCGCAGCAGCAGC.....................2711.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGC---GAG-CGCAAATGCAGC................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................GAAC--------------------------------AA------------------------------------------------------------------------------------------G-A------ACAAGAAGAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.331000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................G-A------ACAAGAAGAAGAAGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGCAGCAGCAGCAG-------CA.......20200.153002000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................ACAAGAAGAAGAAGAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.141000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................A------ACAAGAAGAAGAAGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.142000100000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................ACAAGAAGAAGAAGAACAACA-----------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGCAGCAGCAGCAG-------C........20200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGCAGCAGCAGCAG-------CAGCA....24200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATATGTACATATA-TATA--------TATATGCACACGTGCTCG-CAC---AAGAACCAA---CAAAAAAG----------------AAAA------------------------------------------------------------------------------------------G-A------AGAAGAAGAAGA----------------------------TG---AACAACAA-------------------------A------------------------------------------------------TTGTACAATTGATATGT----TGCTCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTCTTTCTCTC----------CTTCTCT-----------------------------------------------------------CTGTGTGTATCT--------------CTC----------TCTCCCC----TCCC-TT---ATTATTGT----TTATTTA-------CAATT-----------------GA--CCAGATCAACGGCGGAGCC-------------------------------AATGCGA------------------------------ACGCTAATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--CCAGATCAACGGCGGAGCC-------------------------------..............................................2111.001000001
..................................................................AAAAG----------------AAAA------------------------------------------------------------------------------------------G-A------AGAAGAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251010000
droWil2
ACACAGACACTCTAAAAAGCAAACCAAATA---------------CAC---AA--------AACAAACCAAA---C-------------------AAA--------AAAAAA-AAA-----------------------------------------------------------------A-A------AAAC----------------AATTTTAAA-------AAC---AACCGAAACG--------------------------A------------------------------------------------------ATGTTG------------AAAT--TCCATTCAAT-C-----------------------------------------------ATTTTAGTGCATTTAT------CTATCTATCAATTTCTC------TCTTTCTCTCTC----------TC----TCTG--------------TCTGTCTCTCTCACCTTATG--TTGTGTGTATCT---------------TCTC--TTTCTCTCT--C--GTCTCCA-TATTGTTTATTGT----TTAATTATATTAT----TT-----------------GA--CCAGATCAATGGCAGTGGC-------------------------A---ACGTTG--GCGGCGCCGCAGCG---ACTGCAA---------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTC----------TC----TCTG--------------TCTGTCTCT.............................................................................................................................................................................................................................21200.05101000
dp5
ACAG-CA----------------------------------------CAAA--AATAAACCCACAAAAGAA--------------------------------AAACC-------------ACAA------GCAG------AACAAG---------ATGTAGAAGAAGACGAA------------------------GAAGAAG--------------------AAAGC---AAAAGAAACAA-------------------------A---------------------------------------------A--T-GATGATC-----------TGTGATCCGATCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTTTCTCTCTCTCTCTC----TCTCTCTCTCTCTG----------T--------C----------TC--TCTT--TCTCTCCCACTAT---GTGTGTGTATCT--------------CTCTCTTTCTCTCTCTCTCGTGTCTCCC--C---ATTATGAT----TACCGTTTATTTCCGGATT---------A-------TC--TCAGATCAACGGCGGAGCC-------------------------G---------GCAATGCGG-----CG---AATGCAA-------GCGCAGCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................AG------AACAAG---------ATGTAGAAGAAGACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
.............................................................................................................................................AACAAG---------ATGTAGAAGAAGACGAA------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCTC----TCTCTCTCTCTCTG----------T--------C----------T.........................................................................................................................................................................................................................................30200.1020000000200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC----TCTCTCTCTCTCTG----------T--------C----------..........................................................................................................................................................................................................................................20200.0510001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTC----TCTCTCTCTCTCTG----------T--------.....................................................................................................................................................................................................................................................29200.0510000000010
droPer2
ACCCACAAGACAA-------------------------------------A--GACAAAACAAAAC-------T-----------------------------AAAAC-------------ATAT------ACGA------AACAAC---------TACAAGAGAAAAACCAA------------------------ACA--------------------AACAA---ACAA---ACCAAAAA---CAAA-------AAAATAAAT-------------AACA----------------A-----------------------------------------------CAAAGTCAAT-T-----------------------------------------------ATA-CAGAAAAGTCACTATTGTCTCTTTTTTTCTTCT----------CTTCCCT-----------------------------------------------------------CTATATGA-----------------------------------------------------------------------------------------------------CCGTGT-TTAGGTGGCAGC----------------------------A---C--------CGGTGGT-----G---GCAGCCT-------ACTCGGCGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAACCGAAAA-------------------------------------------------------------TTTTC-------------------AAAAAGAAAACCAACAA-AAGAAACAA---CAA------G------AA--ACTGTATCAACACCGAAAG-------------------A------AAAAAAAAAAGA----------------------------TG---AAA-------------------A-------A--T-----------ACG----------------TG----------AAAATTTCGAGGATGTGAAA---------GAGAAG-GCTATTCAAT-C-----------------------------------------------ATA-TAGTGCATTTAT------CTTTCTATCTCTCTCTC----TCTCTGTCT--GTT--TCTTTCTATC----T--CT----------A--TCTC--TCTCTATG---AT---GTGTGTGT-TCTCTCTCTATCTATCTATCTCTCTTTCTCTCTCCCTTGTCTCCCAAA---ATTATTGTTTAT-TGTATATATTTTGCAATT-----------------GC--CCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCACCGCAG-------------------CAACAGTCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTATCTCTCTCTC----TCTC..................................................................................................................................................................................................................................................................................2150.201100000
..............................................................................................................................................................................................AAAAAAAAAAGA----------------------------TG---AAA-------------------A-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.111001000
..................................................................................................AAGAAAACCAACAA-AAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.101010000
droBip1
ACAAACAGAA-----------------------------------------------------------AATTTTC-------------------AAAAAGAAAAACA-------AC------AACAA------G------AACAAC---------ACCCAAAGAAAAATCAA------------------------CAAAAAG--------------------AAAAG---AAAAGAA--------------------------A-------------AGCG----------------AG----------AAAA--TCGAGGATGTGAAA---------GAGAAG-GCTATTCAAT-C-----------------------------------------------ATA-TAGTGCATTTAT------CTTTCTATCTCTCTCTC----TCTCTCTCTCTCTGTC------TGT------TTCTTTCTCTATCTCTATCT------ATCTGTCTATGATGTGTGTGT-TCTCTCTCTCTCTATCTATCTATCTCTCTCTCTCCCTTGTCTCCCAAA---ATTATTGTTTAT-TGTATATATTTTGCAATT-----------------GC--CCAGATCAACGGCAGCGGC-------------------------G---GAGTTGCAACTGCACCGCAGCA---ACAACAAC----AACAACAATCGSizeHit CountTotal NormTotal
No Reads
droKik1
ACAGGTACACTAC-----------------------------CAGCAG---CAACAAGATGCCCAG----------------------------------------CA-------------------GCAACAGC------AGCAAC---------TCCACATGGAGCAACAG--------C-A------ACAA----------------CAACAACA------A---C---AGCAGCAGCAG---CAACAAC----A-------A--T-----------ATG----------------TG----------CAACATCAG--------------------CAGCCC-GCCATTCAGCATACGCAGCAGATTTACTACACCTCAGAGCAAGTA------CTACAGCCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCATTGTCCAGCACATGCAGCAGC---AAAAGAA---GCAGC--A-------------------------G---GTGCTGCAACAACAGC-----A---GCAGCAA-------TACCAGCAGSizeHit CountTotal NormTotal
No Reads
droFic1
ACACACACACC---------------------------CACTCGGCAC---AAAATAGAACAACAGATGAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAA------------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTCTCTCTCTA----------TTTC--TCAA----------TC--TCTC--TATCTTTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACAAACACACG---------------------CACACCCACTCGGCAC---AATATAGAACAACAGAAGAAATTGCTAACAAAAAAAAAAAGAAAAAA--------AAAAAA-CCG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAA------------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTTTCTC----TGTCTTTCTCTCTT----------TC----TCCC----------TA--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATACGCACACCAA-CACAGCTCACAAAACACACACACCCACTCGGCAC---AAAATAGAA---CAGAAAAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------A-A------ACTT----------------AACTCGAA------------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCT--C----TGTCTTTCTCTCTA----------TC----T--CT----------C--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACCCATACACAAA-----------------CACCCACCCACTCGGCAC---AAAATAGAACAACAGAAGAAATTGC-------------------AAA--------AATAAA-CGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAA-----------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTTTCTCTCTA----------TC----T--CT----------C--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACACTCCCA-------------------------------CTCGGCAC---AAAATAGAACAACAGAAGAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAA-----------AA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCT--C----TGTCTTTCTCTCTA----------TC----TCTC----------TC--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--CCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGC----------------------------ACCGSizeHit CountTotal NormTotal
No Reads
droEug1
GCA--------------------------------------------CAAA--AATAGAACAACAAAAGAAATTGC-------------------AAA--------AAGAAA-CGG-----------------------------------------------------------------AAA------ACAA----------------AACTCGTAAA--TAA---AAAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTTTC----TGTCTTTCTTTCTA----------TCTCTCTCTC----------TC--TCTC--TATCTCTGACTAT---GTGTGTGTATCT--------------CTCTA--TCTCTCTCTCCCGTGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--TCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGCACCGCA---ACAGCAA-------CAGCAGCAGSizeHit CountTotal NormTotal
No Reads
dm3
A-------------------------------------------------------------ACAGA-GAAATTGC-------------------AAAAA------AAAAAA-CGA-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAAAAGTAA---CCAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTCTCTCTGTCTTCCTCTCTA----------TC----TATC----------TC--TCTC--TATCTCTGACTAT---GTGTGTGAATCT--------------CTCTA--TCTCTCTCTCCCATGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--TCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGCA----------------------CCGCAGCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................ACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GC..........................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACGGCAGC----------------------------G---GAGTTG..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAACTGCAGCA----------------------CCGC.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------GC--TCAGATCAACGGCAGC----------------------------G---G...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-----------------GC--TCAGATCAACGGCAGC----------------------------G---GA..............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGACTAT---GTGTGTGA........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACGGCAGC----------------------------G---GAGTTGC.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................GA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GC..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACGGCAGC----------------------------G---GAGTTG..........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTTCCTCTCTA----------TC----TATC----------TC--C.....................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAACTGCAGCA----------------------CCGCAGCAG2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC--TATCTCTGACTAT---GTGT............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCTCTCTCTCTCTGTC..................................................................................................................................................................................................................................................................................2040.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................AAA------AAAAAA-CGA-----------------------------------------------------------------A-A------ACAA----------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTCTCTCTCTCTCTGTC..................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................AAA------AAAAAA-CGA-----------------------------------------------------------------A-A------ACAA----------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTCTGTCT.................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T------CTCTCTGTCTCTCTCTCTCT.......................................................................................................................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTGTCTCTCTCTCTCTC......................................................................................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGTCTCTCTCTCTCTCT.....................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T------CTCTCTGTCTCTCTCTCT.........................................................................................................................................................................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------CTCTA--TCTCTCTCTCCA...................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTCTCTCTCTCTCT.....................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTCTCTCTCTCTCT.....................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCA--------------------------------------------CAAA--AATAGAACAACAGA-GAAATTGC-------------------AAA--------AAAAAACCGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGAAAAAGTAA---CCAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTTTCTCTCTATC------TAT------CTCT----------C--TCTC--TATCTCTGACTAT---GTGTGTGAATCT--------------CTCTA--TCTCTCTCTCCCATGTCTCCCACA---ATTATTGT----TTATGTATATTTTGCAATT-----------------GC--TCAGATCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGC----------------------------ACCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGGCAGC----------------------------G---GAGTTGCAACTGCAGC----------------------------A...2911.00100000010000000000
droSec2
ACACC---------------------------------CACTCGGCACAAA--AATAGAACAACAGA-GAAATTGC-------------------AAA--------AAAAAAACGG-----------------------------------------------------------------A-A------ACAA----------------AACTCGATAAAGTAA---CCAA---ACCAACGA-------------------------A------------------------------------------------------ATGTGAAA---------GAGATG-GCCATTCAAT-C-----------------------------------------------ATT-TAGTGCATTTAT------CTCTCTGTCTCTCTCTC----TGTCTTTCTCTCTATC------TAT------CTCT----------C--TCTC--TATCTCTGACTAT---GTGTGTGAATCT--------------CTCTA--TCTCTCTCTCCCATGTCTCCCACA---ATTATTGT----TTATGTATATTTTG--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCGCCCACAACAA------------------------------------------TAACA------------------------------------ATAT------TAATAA-CAATAACAA-----------------------------------------------------------C-A------ACAA----------------TAATAATA------A---CAAT---AACAACAA---CGATGTCGAGAA-------G--T-----------ACG----------------ATCCCATTGCCAAATACTTTGCCAACACGCAG---------CAAAAG-C-TA--------------------------------------------------T--------------------------C-------TCCTGTC---------------------------------------------------------------------ATCG---CTGCGAAAAGCT--------------CAC------------------------------------GGA----TTCTCTGCG----AGAATT-----------------GC--TGTGGCGAGAGGCAGC----------------------------AACAA-GTT----------------G---GCAGCTC-------TATGGACCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................GAGAA-------G--T-----------ACG----------------ATCCCATTGCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----AGAATT-----------------GC--TGTGGCGAGA......................................................................................1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------------------------------------------------------------------ATCG---CTGCGAAAAGCT--------------CAC------------------------------------GG.............................................................................................................................................2311.00100000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCT--------------CAC------------------------------------GGA----TTCTCTGC................................................................................................................................2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATT-----------------GC--TGTGGCGAGAGGC...................................................................................2111.00100000010000
droEre2
CAGTAGCAGCA------------------------------------ACAA--AAG-------------CAATCAC-------------------AACAA----------------------------CAAAAGTAACAACAACAAC---------CACAACAGCAACAACAC------------------------ATT--------------------------AAC---AACAACAACAAAAGCAAA-------CAAACCAATCAATTCTGCGGCCAACAACAAGTGTTTAAGCCAAA----------AGAG--TTCGGCATGAAATG---------GAAGCA-GCTATACGC------------------TCCACTTCAGTGCAGGTCGGTGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGCCCA-----------------------------------------------------------CAAACAACAACAGCAGC-------------------------A---GCA--G---CAGCAG-----CA---ACAACAA-------TAACAACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................AACAAGTGTTTAAGCCAAA----------AGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000020
............................................................................................................................................................................................................................................................................................................................................................................................TCAGTGCAGGTCGGTGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGC............................................................................................................................................................2512.0020002000
.............................................................................................................................................................................................................................................................................................................................................................................................CAGTGCAGGTCGGTGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------C.................................................................................................................................................................1911.0010000100
..............................................................................................................................................................................................................................................................................TCTGCGGCCAACAACAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGCCCA-----------------------------------------------------------CAAACAACAACAGC................................................................................2511.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCGGTGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGCCC..........................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................................................................................................................ACAAGTGTTTAAGCCAAA----------AGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
...............................................................................................................................................................................................................................................................................................................................................................TACGC------------------TCCACTTCAGTGCAGGTCGGTG...........................................................................................................................................................................................................................................................................................................................................2711.0011000000
.............................................................................................................................................AACAAC---------CACAACAGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020001010
................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGTCGGTGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGCCC..........................................................................................................................................................2311.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................CAGTGCAGGTCGGTGCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGCC...........................................................................................................................................................2511.0010001000
.......................................................................................................................................AACAACAACAAC---------CACAACAGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
....................................................................................................................................................................................................................................................................................................................................TGAAATG---------GAAGCA-GCTATACGC------------------TCC..............................................................................................................................................................................................................................................................................................................................................................2511.0011000000
......................................................................AATCAC-------------------AACAA----------------------------CAAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
........................................................................................................................................ACAACAACAAC---------CACAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAG-----CA---ACAACAA-------TAAC.....2050.2010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGC-------------------------A---GCA--G---CAGCA..................................25200.1021000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGC-------------------------A---GCA--G---CA.....................................19200.0510000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGC-------------------------A---GCA--G---C......................................20200.0511000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGC-------------------------A---GCA--G---.......................................20200.0511000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC-------------------------A---GCA--G---CAGCAG-----CA---ACA....................22200.0510001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGC-------------------------A---GCA--G---C......................................19200.0510000010

Generated: 05/17/2015 at 10:24 PM