dgr_401

Name	Class	Family	Strand
Bilbo	LINE	LOA	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#####################----------------------------- TTTTGCTCTATGTTGTATATTACTGATAAGATTATTTTTCCGATTGCATTTATAAAATTTGCTATCTTGGCTGGTCCTAAGCTTGCCATCATTGACAGATTGGGTATGAAATAACTGTCTAAGGTGGCGAAACGTTTCCTGCCAAGCGCAGGGTAGAAGCAGAAGTGCTCAGGAGATTCTTCCTCGTGCTCTTCTTTACAGCTTCTGCAGAAGTCCTTGTAGGGCAACTGGAGTTTGTTTGCATGTATTCC ************************************************...........((((((((((((((...((((((((((((...(((((.(((.........))))))))...))))))))...))))...))).))).))))))))....(((((.((..(((((....)))))...)).)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
........................................................................GGTCCTAAGCTTGCCATCATTGACA..........................................................................................................................................................	25	0	1	1.00	1	1	0
.........................................................................................................................................................................................................................TGTAGGGCAACTGGATTTTGTT............	22	1	1	1.00	1	0	1
..................................................................................................................................................................................................TTTACAGCTTCTGCAGAAGTCCTT.................................	24	0	1	1.00	1	1	0

Species	Coordinate	ID	Alignment
droGri2	scaffold_15203:567546-567796 -	dgr_401	TTTTGCTCTATGTTGTATATTACTGATAAGATTATTTTTCCGATTGCATTTATAAAATTTGCTATCTTGGCTGGTCCTAAGCTTGCCATCATTGACAGATTGGGTATGAAATAACTGTCTAAGGTGGCGAAACGT--------------------------------------------------------------TTCCTGCCAAGCGCAGGGTAGAAGCAGA---AGTGCTCAGGAGATTCTTCCTCGTGCTCTTCTTTACAGCTTCTGCAGAAGTCCTTGTAGGGCAACTGGAGTTTGTTTGCATGTATTCC----
dp5	Unknown_singleton_3880:560-775 +		T--------------------------------------CCAGATGCTCTTATAAAGTTTGCGTCCTTTCTGGGACATAACGTAGACATCTCCGAGATGTCGTTCAGAAAGGCAGTGCCTAAGTGTTGTAGCCTC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGAGCAGAACAGGTGTTCCTTTGTCTCCTCCTCGTCCTCGTCTTTGCAGCTGCGGCAGAAATCATTGTATGGGGCACCCAGCCTGTTTGCGTGGATGCC----
droPer2	scaffold_490:4913-5138 +		AGTTTTTCCA----------------------------TCCAGATGCTCTTATAAAATTAGCGATCTTTTTGGGCCAAAGTGTAGACATCTCCGAGATGTCGGTTAGAAAAGCAGAGCCTAAGTATTGTAGCATC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGAGCAGAACAGGTGTTCCACTGTCTCCTCCTCGTCCTCGTCTCTGCAGCTACGGTAGAAATCATTATGTGGGGCACCCAGCCTGTTGGCGTGGATGCC----
droAna3	scaffold_13260:772224-772429 -		T--------------------------------------T----------TTTTAATTTTTCTATCCTGTTTGGATCTGTTTCTGACACCATCGAGATGTCGTTGAGAAACCAATCATCTAGGTGTTGAAGTCTG--------------------------------------------------------------AGCGACTGCAGAGCTCGGCAGCGGCAAAAAAGATGCTCGACAGTTTCTTCCTCTTCTTCGTCCCTACATCTGCGGCAGTAGTCGTTGTGGGGTAAGTTCATTCGCCTAGCATGTGCTAC----
droBip1	scf7180000391645:20144-20281 -		G--------------------------------------------------------------------------------------------------------------------CCCAAGAAATTGAATCGG--------------------------------------------------------------ATGCGCCCCAGCGCAGGGCATTGACACAGGAGGTGTGTAACTGTCTCTTCCTCTTCTTCGTCTCCACAGCTCCTGCAGTAGTCATAAAGTGGCACCGCTAGTCTAGCCGCGTGTGCTCC----
droKik1	scf7180000300849:15903-16044 +		T--------------------------------------C------------------------------------------------------------------------------CGAAGTGTCGGGCTCTT--------------------------------------------------------------TGTCTGTTGAGTGCCGGGCAGTGGCACAACAGGTGCTCTGGTGTCTCCTGCTCGCTTGGTTCTTTGCAGCTTCTGCATTGTGTGTTGTAGGGTAGACCCATCTTACAGGCTTGCGTGCCTACT
droEle1	scf7180000491226:8719-8934 -		T--------------------------------------CCGGTTGCTTTCATGAATTTTATTATTCGCTTTAGGTTTATACTCGCCAGTTCAGATAGACTGTTCATGAAGGGATTCCCCAAGTGGTACAGTTTA--------------------------------------------------------------GATCTGCAAAGGGCCGGGCAGGAACAGAACAGGTGTTCCACCGTTTCCTCCTCCTCCTCGTCCCTGCAGCTTCTGCAGAAATCGTTTTGGGGCGCGCCCAGTCTGCTTGCATGTGTGCC----
droRho1	scf7180000776829:25309-25467 -		C-----------------------------------------------------------------------------------------------AGGTTGTTTATGAAAGGATATCCTAAGTGTTTCAGTCTG--------------------------------------------------------------AGCCTGCATAGGGCTGGGCATGAACAGAGTAGGTGTTCCACCGTTTCCTCTTCTTCCTCATCCCTGCAGCTTCTGCAAAAATCGTTTTTTGGGGCTTTTAGCCTGCCGGCGTGTGCGCC----
droBia1	scf7180000301352:30511-30626 +		T--------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCAAAGAGTAGGACAGAAGCAGAGGAGATGATTTACCG---CCTTATCTTCTTCATCCATGCAATTTCTACAGAAGTCATATTTTGGTGCTTTTAGGCTCCCGACATGTGTGCC----
droTak1	scf7180000411755:1326-1541 -		T--------------------------------------CCGGTTTCTTTCATGAATTTTATTATTCGCTTTAGGCTTATATTCGCCAGTTCAGATAAACAACTCATGAAGGGATTCCCTAAGTGGTACAGTCTA--------------------------------------------------------------GACCTGCATAGGGCCGGGCAGGAACAGAACAGGTGTTCCACCGTTTCCTCCTCCTCCTCGTCCCTGCAGCTTCTGCAGAAATCGTTTTGGGGTGCGCCCAGTCTGCTTGCATGTGTGCC----
droYak3	3L:23717339-23717561 -		A--------------------------------------TTATTTTTT---AGAAAT--------------------------TGT--------------------------CACCACCTAAAAACTCTAGCTTTGCATTGCCTTAAGATAATAATTATTCAAATTCAACATAGAAATAATAATAGTAATAATAATTTTCGCTTTCAGTGCTGGACAGTGGCATAGTAGATGCTCTACCGTTTCTTCCATTTCTTCGTCCCTACAGCTACGGCAGAAATCATTGTACGGGGCATTTAGTCTTCTGGCATGGGTGCC----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TTTTGCTCTATGTTGTATATTACTGATAAGATTATTTTTCCGATTGCATTTATAAAATTTGCTATCTTGGCTGGTCCTAAGCTTGCCATCATTGACAGATTGGGTATGAAATAACTGTCTAAGGTGGCGAAACGT--------------------------------------------------------------TTCCTGCCAAGCGCAGGGTAGAAGCAGA---AGTGCTCAGGAGATTCTTCCTCGTGCTCTTCTTTACAGCTTCTGCAGAAGTCCTTGTAGGGCAACTGGAGTTTGTTTGCATGTATTCC----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................GGTCCTAAGCTTGCCATCATTGACA...............................................................................................................................................................................................................................	25	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................TTTACAGCTTCTGCAGAAGTCCTT.....................................	24	1	1.00	1	1	0

dp5

T--------------------------------------CCAGATGCTCTTATAAAGTTTGCGTCCTTTCTGGGACATAACGTAGACATCTCCGAGATGTCGTTCAGAAAGGCAGTGCCTAAGTGTTGTAGCCTC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGAGCAGAACAGGTGTTCCTTTGTCTCCTCCTCGTCCTCGTCTTTGCAGCTGCGGCAGAAATCATTGTATGGGGCACCCAGCCTGTTTGCGTGGATGCC----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCTG..................	24	13	7.15	93	0	87	3	0	0	0	0	3	0	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCTGT.................	25	13	5.77	75	0	67	8	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAGGC...............................................................................................................................................................................................................	26	17	5.12	87	0	80	6	0	1	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAGG................................................................................................................................................................................................................	25	17	4.35	74	0	65	6	0	0	0	0	0	3	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCTGTT................	26	13	4.31	56	0	52	1	0	0	0	0	3	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGAGCAGAA..............................................................................................	25	12	2.33	28	0	0	0	0	0	0	0	20	8	0
................................................................CCTTTCTGGGACATAACGTAGACATC......................................................................................................................................................................................................................................	26	3	2.00	6	0	1	0	0	0	0	0	4	1	0
............................................................................................................................................................................................................TGAGAGCTGGACAGGAGCAGAACAGG..........................................................................................	26	10	1.60	16	0	2	0	0	0	0	0	8	6	0
........................................................................................TCTCCGAGATGTCGTTCAGAAAGGC...............................................................................................................................................................................................................	25	18	1.56	28	0	24	3	0	0	0	0	1	0	0
.................................................TTATAAAGTTTGCGTCCTTTCTGGGA.....................................................................................................................................................................................................................................................	26	2	1.50	3	0	0	0	0	0	0	0	3	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGGG..............................	23	17	1.47	25	0	13	1	0	0	0	2	4	5	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGG.....................................................................................................	24	20	1.45	29	0	26	0	0	0	0	0	3	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGGGG.............................	24	17	1.41	24	0	16	3	0	1	0	1	1	2	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAGGCA..............................................................................................................................................................................................................	27	15	1.40	21	0	20	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATTGTA..................................	25	19	1.37	26	0	22	0	0	0	0	1	2	1	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCT...................	23	18	1.22	22	0	21	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGC.....................	21	19	1.16	22	0	20	1	0	1	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAG.................................................................................................................................................................................................................	24	19	1.00	19	0	18	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGAG...................................................................................................	20	14	0.93	13	0	0	0	0	0	0	0	4	9	0
.......................................................................................................................................................................................................................................................................................CATTGTATGGGGCACCCAGCCTGT.................	24	13	0.92	12	0	12	0	0	0	0	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGA....................................................................................................	25	20	0.85	17	0	11	0	0	0	0	0	6	0	0
.......................................................................................................................................................................................................................................................................................CATTGTATGGGGCACCCAGCCTGTT................	25	13	0.85	11	0	11	0	0	0	0	0	0	0	0
.......................................................................................................TCAGAAAGGCAGTGCCTAAGTGTTG................................................................................................................................................................................................	25	4	0.75	3	0	2	0	0	0	0	1	0	0	0
.......................................................................................................................TAAGTGTTGTAGCCTC--------------------------------------------------------------CTTCTGCTG..................................................................................................................	25	4	0.75	3	0	0	0	0	0	0	0	3	0	0
........................................................................................TCTCCGAGATGTCGTTCAGAAAGG................................................................................................................................................................................................................	24	18	0.72	13	0	11	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................CATTGTATGGGGCACCCAGCCTG..................	23	13	0.69	9	0	9	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTTGCGTGG.........	25	15	0.67	10	0	10	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGGAG...................................................................................................	22	14	0.64	9	0	6	0	0	0	0	0	2	1	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAG......................	20	19	0.63	12	0	12	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTTGCGTG..........	24	15	0.60	9	0	8	0	0	0	0	0	0	1	0
......................................................................TGGGACATAACGTAGACATCTCCGAG................................................................................................................................................................................................................................	26	5	0.60	3	0	1	0	0	0	0	0	2	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGGGGC............................	25	17	0.59	10	0	3	2	0	0	0	0	4	1	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGGAGCAGA...............................................................................................	26	12	0.58	7	0	0	0	0	0	0	0	7	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATTGTAT.................................	26	19	0.53	10	0	5	1	0	1	0	0	3	0	0
....................................................................................................................................................................................................................................................................................AATCATTGTATGGGGCACCCAGC.....................	23	19	0.53	10	0	8	1	0	1	0	0	0	0	0
........................................................................................TCTCCGAGATGTCGTTCAGAAAGGCA..............................................................................................................................................................................................................	26	16	0.50	8	0	8	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGAGAGCTGGACAGGAGCAGAA..............................................................................................	22	12	0.50	6	0	0	0	0	0	0	0	5	1	0
..................................................TATAAAGTTTGCGTCCTTTCTGGGA.....................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................TGTTCCTTTGTCTCCTCCTCGTCC..................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TAAGTGTTGTAGCCTC--------------------------------------------------------------CTTCTGC....................................................................................................................	23	4	0.50	2	0	2	0	0	0	0	0	0	0	0
......................................................................................CATCTCCGAGATGTCGTTCAGAAAGGC...............................................................................................................................................................................................................	27	17	0.47	8	0	1	2	0	0	0	0	5	0	0
.........................................................................................................................................................................................................................................................................GCTGCGGCAGAAATCATTGTATGGG..............................	25	17	0.47	8	0	3	0	0	1	0	3	0	1	0
............................................................................................................................................................................................................TGAGAGCTGGACAGGAGCAGAACA............................................................................................	24	11	0.45	5	0	2	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAGG.....................................................................................................	21	20	0.45	9	0	8	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................AATCATTGTATGGGGCACCCAG......................	22	19	0.42	8	0	7	0	0	0	0	0	1	0	0
......................................................................TGGGACATAACGTAGACATCTCCGAGA...............................................................................................................................................................................................................................	27	5	0.40	2	0	1	0	0	0	0	0	1	0	0
....................................................................TCTGGGACATAACGTAGACATCT.....................................................................................................................................................................................................................................	23	5	0.40	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGGA....................................................................................................	21	20	0.40	8	0	0	0	0	0	0	1	7	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACA.......................................................................................................	22	20	0.40	8	0	5	1	0	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGCGTG..........	26	13	0.38	5	0	2	0	0	3	0	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGGAGC..................................................................................................	23	13	0.38	5	0	4	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGAGC..................................................................................................	21	13	0.38	5	0	0	0	0	0	0	0	5	0	0
....................................................................................................................................................................................................................................................................................AATCATTGTATGGGGCACCCAGCC....................	24	19	0.37	7	0	6	1	0	0	0	0	0	0	0
..........................................................................................TCCGAGATGTCGTTCAGAAAGGC...............................................................................................................................................................................................................	23	19	0.37	7	0	5	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCC....................	22	19	0.37	7	0	6	1	0	0	0	0	0	0	0
..........................................................................................TCCGAGATGTCGTTCAGAAAGGCAG.............................................................................................................................................................................................................	25	17	0.35	6	0	4	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGG.....................................................................................................	18	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGG.....................................................................................................	20	20	0.35	7	0	4	0	0	0	0	0	3	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATTG....................................	23	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...............................................................TCCTTTCTGGGACATAACGTAGACA........................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TGTTGTAGCCTC--------------------------------------------------------------CTTCTGCTGAGAGC.............................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TGTTGTAGCCTC--------------------------------------------------------------CTTCTGCTGAGAAA.............................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAA..................................................................................................................................................................................................................	23	19	0.32	6	0	6	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGCG............	24	13	0.31	4	0	3	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGCGTT..........	26	13	0.31	4	0	3	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGA....................................................................................................	19	20	0.30	6	0	0	0	0	0	0	0	3	3	0
...............................................................................................................................................................................................................................................................................GCAGAAATCATTGTATGGG..............................	19	17	0.29	5	0	4	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATG................................	21	17	0.29	5	0	2	0	0	1	0	0	0	2	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAGGAG...................................................................................................	23	14	0.29	4	0	2	0	0	0	0	0	2	0	0
.........................................................................................CTCCGAGATGTCGTTCAGAAAGG................................................................................................................................................................................................................	23	18	0.28	5	0	4	1	0	0	0	0	0	0	0
.........................................................................................CTCCGAGATGTCGTTCAGAAAGGC...............................................................................................................................................................................................................	24	18	0.28	5	0	3	2	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAGGCAG.............................................................................................................................................................................................................	28	15	0.27	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................TCAGAAAGGCAGTGCCTAAGTGTTGT...............................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
................................................................................................ATGTCGTTCAGAAAGGCAGTGCC.........................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................TGTCGTTCAGAAAGGCAGTGCCTAAG.....................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGGGGCAC..........................	27	16	0.25	4	0	1	3	0	0	0	0	0	0	0
................................................................................................ATGTCGTTCAGAAAGGCAGTGCCTAAG.....................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGAGCAGA...............................................................................................	24	12	0.25	3	0	2	0	0	0	0	0	1	0	0
....................................................................................................CGTTCAGAAAGGCAGTGCCTAAGT....................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.................................................................CTTTCTGGGACATAACGTAGACATCTC....................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAG......................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
....................................................................................................CGTTCAGAAAGGCAGTGCCTAAGTGT..................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGAC........................................................................................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGAGCAG................................................................................................	23	12	0.25	3	0	1	0	0	0	0	0	1	1	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATTGT...................................	24	20	0.25	5	0	4	1	0	0	0	0	0	0	0
....................................................................................................CGTTCAGAAAGGCAGTGCCTAAGTG...................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TCCGAGATGTCGTTCAGAAAGGCA..............................................................................................................................................................................................................	24	17	0.24	4	0	3	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGG...............................	22	17	0.24	4	0	3	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................TTGTATGGGGCACCCAGCCTG..................	21	13	0.23	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGCGT...........	25	13	0.23	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTATGGGGCACCCAGCCTGTTTGCG............	26	13	0.23	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGC.............	23	13	0.23	3	0	2	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGCTGCGGCAGAAATCATTGTA..................................	23	19	0.21	4	0	1	0	0	0	0	0	0	3	0
................................................................................................................................TAGCCTC--------------------------------------------------------------CTTCTGCTGAGAGCTGG..........................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................TGGGACATAACGTAGACATCTCCGA.................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................CCTAAGTGTTGTAGCCTC--------------------------------------------------------------CTT........................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	1	0	0
......................................................................TGGGACATAACGTAGACATCTCC...................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAG......................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	4	0	0
.......................................................................................................................TAAGTGTTGTAGCCTC--------------------------------------------------------------CTT........................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................GGGACATAACGTAGACATCTC....................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................CTCCGAGATGTCGTTCAGAAAG.................................................................................................................................................................................................................	22	20	0.20	4	0	1	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAGGA....................................................................................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................TAAGTGTTGTAGCCTC--------------------------------------------------------------CTTC.......................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TGTAGCCTC--------------------------------------------------------------CTTCTGCTGAGAGCT............................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TCTCCGAGATGTCGTTCAGAAAGGCAG.............................................................................................................................................................................................................	27	16	0.19	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................CTCCGAGATGTCGTTCAGAAAGGCA..............................................................................................................................................................................................................	25	16	0.19	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GAGAGCTGGACAGGAGCAGAAC.............................................................................................	22	11	0.18	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGAGAGCTGGACAGGAGCAGAAC.............................................................................................	23	11	0.18	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCTT..................	24	17	0.18	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATTGTATG................................	27	17	0.18	3	0	0	0	0	0	0	0	0	3	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCTGC.................	25	17	0.18	3	0	0	3	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAGGAGCAGA...............................................................................................	27	12	0.17	2	0	2	0	0	0	0	0	0	0	0
.....................................................................CTGGGACATAACGTAGAC.........................................................................................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGAGCAGAAG.............................................................................................	26	12	0.17	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................TGAGAGCTGGACAGGAGCAGA...............................................................................................	21	12	0.17	2	0	1	0	0	0	0	0	0	1	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAA...................................................................................................................................................................................................................	22	19	0.16	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CATTGTATGGGGCACCCAGCC....................	21	19	0.16	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................CTC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAG......................................................................................................	24	19	0.16	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AATCATTGTATGGGGCACCCAGCCTG..................	26	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTGTATGGGGCACCCAGCCTGTTTG..............	25	13	0.15	2	0	1	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................TGTATGGGGCACCCAGCCTGTTTG..............	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTGTATGGGGCACCCAGCCTGTT................	23	13	0.15	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAGGAGC..................................................................................................	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTG..............	22	13	0.15	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAG.....................................................................................................................................................................................................................	20	20	0.15	3	0	2	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................CTGCTGAGAGCTGGACAGGA....................................................................................................	20	20	0.15	3	0	2	0	0	0	0	1	0	0	0
.........................................................................................CTCCGAGATGTCGTTCAGAAAGGCAG.............................................................................................................................................................................................................	26	16	0.13	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GCAGAAATCATTGTATGGGGCACCCA.......................	26	16	0.13	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTTGCGT...........	23	16	0.13	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGGGGCA...........................	26	16	0.13	2	0	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCTGCGGCAGAAATCATTGTATGG...............................	24	17	0.12	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTGCGGCAGAAATCATTGTATGGGG.............................	25	17	0.12	2	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCTGCGGCAGAAATCATTGTATGGGG.............................	26	17	0.12	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCGGCAGAAATCATTGTATGGGG.............................	23	17	0.12	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCTGGACAGGAGCAGAACAGGTGTT......................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................TGAGAGCTGGACAGGAGCAGAACAGGTG........................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................CATTGTATGGGGCACCCAGCCT...................	22	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.............................................................................TAACGTAGACATCTCCGAGAA..............................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CATTGTATGGGGCACCCAGC.....................	20	19	0.11	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCC...................	23	19	0.11	2	0	0	2	0	0	0	0	0	0	0
..........................................................................................TCCGAGATGTCGTTCAGAAAGG................................................................................................................................................................................................................	22	19	0.11	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GCAGCTGCGGCAGAAATCATTGTA..................................	24	19	0.11	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AAATCATTGTATGGGGCACCCAGC.....................	24	19	0.11	2	0	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGCTGCGGCAGAAATCATTGTAT.................................	24	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATTGTAA.................................	26	19	0.11	2	0	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AATCATTGTATGGGGCACCC........................	20	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGA....................................................................................................................................................................................................................	21	20	0.10	2	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATT.....................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................TCTCCGAGATGTCGTTCAGAA...................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................GCCTC--------------------------------------------------------------CTTCTGCTGAGAGCTGGAC........................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGG..........................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................TCTCCGAGATGTCGTTCAGAAAG.................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAG......................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTTCTGCTGAGAGCTGGACAGGA....................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGG.....................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAA.................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GAGCTGGACAGGAGCAGAACAGGT.........................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AGCTGGACAGGAGCAGAACAGGT.........................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGAGAGCTGGACAGGAGCAGAACAG...........................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................CTTCTGCTGAGAGCTGGACAGGAGCA.................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAGGAGCA.................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGGAGCA.................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CTGCTGAGAGCTGGACAGGAGCAGAA..............................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................ACAGGAGCAGAACAGGTG........................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTATGGGGCACCCAGCCTG..................	20	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AAATCATTGTATGGGGCACCCAGCCTGT.................	28	13	0.08	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTGTATGGGGCACCCAGCCTGTTTGC.............	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTATGGGGCACCCAGCCTGTTTGC.............	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTATGGGGCACCCAGCCTGTTT...............	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ATCATTGTATGGGGCACCCAGCCTGTT................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTGTATGGGGCACCCAGCCTGTTC...............	24	13	0.08	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCTGTA................	26	13	0.08	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATTGTATGGGGCACCCAGCCTG..................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CTGCTGAGAGCTGGACAGGAGC..................................................................................................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GTATGGGGCACCCAGCCTGTTTGC.............	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGCGA...........	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCAGCCTGG.................	25	13	0.08	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATTGTATGGGGCACCCAGCCTGTT................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTA...............	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTATGGGGCACCCAGCCTGTTTGCA............	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTT...............	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TGTATGGGGCACCCAGCCTGTT................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGCGAA..........	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GCTGAGAGCTGGACAGGAG...................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TATGGGGCACCCAGCCTGTTTGCAAA..........	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GGGGCACCCAGCCTGTTTGCGTGT.........	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTTGCGTGT.........	25	15	0.07	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATGGGGCACCCAGCCTGTTTGAA............	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTTGCGTGGT........	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGGGGCACC.........................	28	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GCAGAAATCATTGTATGGGGCACCCAGC.....................	28	16	0.06	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCTGCGGCAGAAATCATTGTATGGGGCA...........................	28	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GGGGCACCCAGCCTGTTTG..............	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTGCGGCAGAAATCATTGTATGG...............................	23	17	0.06	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................CAGCTGCGGCAGAAATCATTGTATGG...............................	26	17	0.06	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCATTGTATGG...............................	28	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTTG..............	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGCTGCGGCAGAAATCATTGTATGGG..............................	27	17	0.06	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................CAGAAATCATTGTATGGGGCACCCAGCC....................	28	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GGCAGAAATCATTGTATGGGG.............................	21	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCTGCGGCAGAAATCATTGTATGGGGC............................	27	17	0.06	1	0	1	0	0	0	0	0	0	0	0
............................................................................................CGAGATGTCGTTCAGAAAGGCAG.............................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TCCGAGATGTCGTTCAGAAAGGCAC.............................................................................................................................................................................................................	25	17	0.06	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CAGAAATCATTGTATGGGGCACCCAG......................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTTGC.............	21	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTATGGGA.............................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GCAGAAATCATTGTATGGGG.............................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGAAATCATTGTATGGGGCACT.........................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CAGAAATCATTGTATGGGGCACCC........................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCGGCAGAAATCATTGTATGG...............................	21	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGGGGCACCCAGCCTGTTT...............	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CAGAAATCATTGTATGGGGCACCCAGC.....................	27	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGCTGCGGCAGAAATCATTGTATG................................	25	17	0.06	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................GAAATCATTGTATGGGGCAC..........................	20	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAGGA...............................................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GAAATCATTGTATGGGGCACCCAGCC....................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................CCTC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGA....................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAGGT...............................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CAGAAATCATTGTATGGGG.............................	19	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCGGCAGAAATCATTGTAAA................................	21	18	0.06	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AAATCATTGTATGGGGCACCCAGCC....................	25	19	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GAAATCATTGTATGGGGC............................	18	19	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCATTGTATGGGGCACCCA.......................	19	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AGCTGCGGCAGAAATCATTGTA..................................	22	19	0.05	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................CATTGTATGGGGCACCCAG......................	19	19	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................CATCTCCGAGATGTCGTTCAGAA...................................................................................................................................................................................................................	23	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................ATCTCCGAGATGTCGTTCAGAAAGA................................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAGGAGCAGAACAGGTGTTC.....................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ATCATTGTATGGGGCACCCAGC.....................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GCTGCGGCAGAAATCATTGTAT.................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................CGAGATGTCGTTCAGAAAGGC...............................................................................................................................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................CCGAGATGTCGTTCAGAAAGGC...............................................................................................................................................................................................................	22	19	0.05	1	0	0	0	1	0	0	0	0	0	0
......................................................................................CATCTCCGAGATGTCGTTCAGAAAG.................................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AATCATTGTATGGGGCACCCA.......................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTGTATGGGGCACCCAGCCTGC.................	22	19	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................ACATCTCCGAGATGTCGTTCAGAAA..................................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TCTCCGAGATGTCGTTCAGA....................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAG......................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................CCTC--------------------------------------------------------------CTTCTGCTGAGAGCTGGAC........................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGA....................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACA.......................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGCTGCGGCAGAAATCATT.....................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGA.........................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACA.......................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAA......................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGA.........................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGACA..................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGCAGCTGCGGCAGAAATCA.......................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TTGTATGGGGCACCCAGCCT...................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GCAGCTGCGGCAGAAATCATTG....................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGAA........................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................CCTC--------------------------------------------------------------CTTCTGCTGAGAGCTGG..........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

AGTTTTTCCA----------------------------TCCAGATGCTCTTATAAAATTAGCGATCTTTTTGGGCCAAAGTGTAGACATCTCCGAGATGTCGGTTAGAAAAGCAGAGCCTAAGTATTGTAGCATC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGAGCAGAACAGGTGTTCCACTGTCTCCTCCTCGTCCTCGTCTCTGCAGCTACGGTAGAAATCATTATGTGGGGCACCCAGCCTGTTGGCGTGGATGCC----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACA.......................................................................................................	22	20	7.05	141	3	138	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGG.....................................................................................................	24	20	6.40	128	5	123	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAG......................................................................................................	23	20	6.15	123	2	121	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGAG...................................................................................................	26	6	1.50	9	0	9	0	0	0	0
.....................................................AAAATTAGCGATCTTTTTGGGC.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................CATC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAG......................................................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................ATC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACA.......................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACA.......................................................................................................	21	20	0.70	14	0	14	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGAGC..................................................................................................	27	6	0.67	4	0	4	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGA.........................................................................................................	20	20	0.65	13	0	13	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGG..........................................................................................................	19	20	0.55	11	0	11	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAG......................................................................................................	22	20	0.50	10	0	10	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGA....................................................................................................	25	20	0.35	7	7	0	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGG.....................................................................................................	23	20	0.35	7	0	7	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGAC........................................................................................................	21	20	0.30	6	6	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ATCATTATGTGGGGCACCCAGCCTGT.................	26	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAC......................................................................................................	23	20	0.20	4	0	4	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGAA........................................................................................................	21	20	0.20	4	0	4	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGAGCA.................................................................................................	28	6	0.17	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................TTCCACTGTCTCCTCCTCGTCCT.................................................................	23	20	0.15	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................TCCACTGTCTCCTCCTCGTCCT.................................................................	22	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGGT....................................................................................................	25	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................CAGGTGTTCCACTGTCTCCTCCTCG.....................................................................	25	18	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................TTCCACTGTCTCCTCCTCGTCCTCG...............................................................	25	18	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................TTCCACTGTCTCCTCCTCGTCC..................................................................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGGA....................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAGGAG...................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................TGTTCCACTGTCTCCTCCTA......................................................................	20	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................GAGCTGGACAGGAGCAGA...............................................................................................	18	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................CAGAACAGGTGTTCCACTGTCTCCTC.........................................................................	26	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................TCTGCTGAGAGCTGGACAG......................................................................................................	19	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................AGGAGCAGAACAGGTGTTC.....................................................................................	19	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................CAGAACAGGTGTTCCACTGAA..............................................................................	21	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GTGTTCCACTGTCTCCTCC........................................................................	19	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................CTGCTGAGAGCTGGACAG......................................................................................................	18	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................TGTTCCACTGTCTCCTCCTCGTCC..................................................................	24	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................TTCCACTGTCTCCTCCTCGTC...................................................................	21	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................ACAGGTGTTCCACTGTCTCCTCCTC......................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................ACAGGTGTTCCACTGTCTC............................................................................	19	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................C--------------------------------------------------------------CTTCTGCTGAGAGCTGGACAGT.....................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................TC--------------------------------------------------------------CTTCTGCTGAGAGCTGGACT.......................................................................................................	22	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................TTCCACTGTCTCCTCCTCGTCCTC................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACAGGA....................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................TGTTCCACTGTCTCCTCCTCG.....................................................................	21	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................TTCTGCTGAGAGCTGGACA.......................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................TGCTGAGAGCTGGACAGGAG...................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................TCCACTGTCTCCTCCTCGTCC..................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

T--------------------------------------T----------TTTTAATTTTTCTATCCTGTTTGGATCTGTTTCTGACACCATCGAGATGTCGTTGAGAAACCAATCATCTAGGTGTTGAAGTCTG--------------------------------------------------------------AGCGACTGCAGAGCTCGGCAGCGGCAAAAAAGATGCTCGACAGTTTCTTCCTCTTCTTCGTCCCTACATCTGCGGCAGTAGTCGTTGTGGGGTAAGTTCATTCGCCTAGCATGTGCTAC----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................TCTTCTTCGTCCCTACATCTGCGGC...............................................	25	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCCCTACATCTGCGGCAGTAGTCGTT.....................................	26	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................TCTAGGTGTTGAAGTCTG--------------------------------------------------------------AGCGACTGCA.................................................................................................................	28	4	0.25	1	1	0	0	0	0	0

droBip1

G--------------------------------------------------------------------------------------------------------------------CCCAAGAAATTGAATCGG--------------------------------------------------------------ATGCGCCCCAGCGCAGGGCATTGACACAGGAGGTGTGTAACTGTCTCTTCCTCTTCTTCGTCTCCACAGCTCCTGCAGTAGTCATAAAGTGGCACCGCTAGTCTAGCCGCGTGTGCTCC----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T--------------------------------------C------------------------------------------------------------------------------CGAAGTGTCGGGCTCTT--------------------------------------------------------------TGTCTGTTGAGTGCCGGGCAGTGGCACAACAGGTGCTCTGGTGTCTCCTGCTCGCTTGGTTCTTTGCAGCTTCTGCATTGTGTGTTGTAGGGTAGACCCATCTTACAGGCTTGCGTGCCTACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T--------------------------------------CCGGTTGCTTTCATGAATTTTATTATTCGCTTTAGGTTTATACTCGCCAGTTCAGATAGACTGTTCATGAAGGGATTCCCCAAGTGGTACAGTTTA--------------------------------------------------------------GATCTGCAAAGGGCCGGGCAGGAACAGAACAGGTGTTCCACCGTTTCCTCCTCCTCCTCGTCCCTGCAGCTTCTGCAGAAATCGTTTTGGGGCGCGCCCAGTCTGCTTGCATGTGTGCC----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C-----------------------------------------------------------------------------------------------AGGTTGTTTATGAAAGGATATCCTAAGTGTTTCAGTCTG--------------------------------------------------------------AGCCTGCATAGGGCTGGGCATGAACAGAGTAGGTGTTCCACCGTTTCCTCTTCTTCCTCATCCCTGCAGCTTCTGCAAAAATCGTTTTTTGGGGCTTTTAGCCTGCCGGCGTGTGCGCC----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T--------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCAAAGAGTAGGACAGAAGCAGAGGAGATGATTTACCG---CCTTATCTTCTTCATCCATGCAATTTCTACAGAAGTCATATTTTGGTGCTTTTAGGCTCCCGACATGTGTGCC----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T--------------------------------------CCGGTTTCTTTCATGAATTTTATTATTCGCTTTAGGCTTATATTCGCCAGTTCAGATAAACAACTCATGAAGGGATTCCCTAAGTGGTACAGTCTA--------------------------------------------------------------GACCTGCATAGGGCCGGGCAGGAACAGAACAGGTGTTCCACCGTTTCCTCCTCCTCCTCGTCCCTGCAGCTTCTGCAGAAATCGTTTTGGGGTGCGCCCAGTCTGCTTGCATGTGTGCC----	Size	Hit Count	Total Norm	Total
No Reads

droYak3

A--------------------------------------TTATTTTTT---AGAAAT--------------------------TGT--------------------------CACCACCTAAAAACTCTAGCTTTGCATTGCCTTAAGATAATAATTATTCAAATTCAACATAGAAATAATAATAGTAATAATAATTTTCGCTTTCAGTGCTGGACAGTGGCATAGTAGATGCTCTACCGTTTCTTCCATTTCTTCGTCCCTACAGCTACGGCAGAAATCATTGTACGGGGCATTTAGTCTTCTGGCATGGGTGCC----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................TTCTTCGTCCCTACAGCTACGGCAGAAA..........................................	28	20	2.35	47	0	0	0	0	0	0	0	0	0	0	47
...........................................................................................................................................................................................................................................................................TACGGCAGAAATCATTGTACGGGGCA...........................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTCTTCCATTTCTTCGTCCCTACAGC.....................................................	26	20	1.35	27	0	6	0	0	0	0	0	0	0	0	21
................................................................................................................................................................................................................................................TTTCTTCCATTTCTTCGTCCCTACAG......................................................	26	20	1.00	20	0	0	0	0	0	0	0	0	0	0	20
...........................................................................................................................................................................................................................................................................TACGGCAGAAATCATTGTACGGGGC............................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTCTTCGTCCCTACAGCTACGGCAGA............................................	26	20	0.55	11	0	0	0	0	0	0	0	0	0	0	11
...................................................................................................................................................................................................................................................CTTCCATTTCTTCGTCCCTACAGCTACGGCA..............................................	31	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6
.............................................................................................................................................................................................................................................................TTCGTCCCTACAGCTACGGCAGAAAT.........................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4
...........................................................................................................................................................................................................................................TACCGTTTCTTCCATTTCTTCGTCCC...........................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTTCGTCCCTACAGCTACGGCAGAAAA.........................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.................................................................................................................................................................................................................................................TTCTTCCATTTCTTCGTCCCTACA.......................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TCTTCGTCCCTACAGCTACGGCAGAAAA.........................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................TGCTGGACAGTGGCATAGTAGATGCTC.....................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CTTCCATTTCTTCGTCCCTACAGC.....................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CATTTCTTCGTCCCTACAGCTACGGC...............................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CTGGACAGTGGCATAGTAGATGCTC.....................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TTTCTTCCATTTCTTCGTCCCT..........................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................TTCCATTTCTTCGTCCCTACAGCTACGG................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................TAGTAGATGCTCTACCGTTTCTTCCATT.....................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTCCATTTCTTCGTCCCTACAGCTAC..................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TCCATTTCTTCGTCCCTACAGCTACGGCA..............................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGCATAGTAGATGCTCTACCGTTTC............................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAGTAGATGCTCTACCGTTTCTTCC........................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAGTAGATGCTCTACCGTTTCTTCCAT......................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CGTTTCTTCCATTTCTTCGTCCCTA.........................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGCATAGTAGATGCTCTACCGTTTCTTC.........................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................TCCATTTCTTCGTCCCTACAGCTACGG................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

dgr_401

scaffold_15203:567596-567746 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-46.7	-46.5	-46.5