dgr_400

Name	Class	Family	Strand
LOA	LINE	LOA	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TATTTTACCATGAATCCCTGGGAACGCACACCAGCATATTTCAGGCTGAGGTGTGTGCGATAGGGAGATGTGCGGACATCAACATAGAACGTAACTATCGGAATACGGGATATATCCATCCTATCCGATAGTCAAGCAGCATTGAAAGCTATAATGGGGACTAAGATAACATCGAAAGGGTAGTCCATGAAGTTCGTTCAAAGCTAGACCTACTCGGGACTCACAACAGGCTCATCATACGACGGGTCCCG ************************************************((((.(((.(((......)))))).)))).......(((((...((((((((....(((((......))))).))))))))((((......)))).((((...(((((.(((..(((...))).....)))..)))))..)))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
....................................................GTGTGCGATAGGGAGATGTGCCC................................................................................................................................................................................	23	2	20	0.05	1	1	0
..................................................................................................................TCCATCCTATCCGATAGTCAAGCAG................................................................................................................	25	0	20	0.05	1	0	1

ATAAAATGGTACTTAGGGACCCTTGCGTGTGGTCGTATAAAGTCCGACTCCACACACGCTATCCCTCTACACGCCTGTAGTTGTATCTTGCATTGATAGCCTTATGCCCTATATAGGTAGGATAGGCTATCAGTTCGTCGTAACTTTCGATATTACCCCTGATTCTATTGTAGCTTTCCCATCAGGTACTTCAAGCAAGTTTCGATCTGGATGAGCCCTGAGTGTTGTCCGAGTAGTATGCTGCCCAGGGC ************************************************((((.(((.(((......)))))).)))).......(((((...((((((((....(((((......))))).))))))))((((......)))).((((...(((((.(((..(((...))).....)))..)))))..)))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
.......................................................................CGCCTGTAGTTGTATCTTGCATTGAT..........................................................................................................................................................	26	0	20	0.05	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15127:3385-3635 +	dgr_400	TATTTTACCATGAATCCCTGGGAACGCACACCAGCATATTTCAGGCTGAGGTGTGTGCGATAGGGAGATGTGCGGACATCAA-CATAGAACGTAACTATCGGAATACGGGATATATCCATCCTATCCGATAGTCAAGCAGCATTGAAAGCTATAATGGG-GACTAAGATAACATCGAAAGGGTAGTCCATGAAGTTCGTTCAAAGCTAGACCTACTCGGGACTCACAACAGGCTCATCATACGACGGGTCCCG
dp5	Unknown_group_445:7248-7367 +		C-------------------------------AGCATATTCCAGGCAGAGGTTTTTGCCATCAGGAAAGCAGCAGAGGTCGC-TCTTCTCACTGAAAGAGCACAC-GATGCGGTCAATCTATTCGTCGACAGCCAAGCGGCAATCAGATCCAT----------------------------------------------------------------------------------------------------
droPer2	scaffold_81:172656-172793 -		TAAGCTACCG-------------GACCAATGCAGCATATTCCAGGCTGAAGTTTTTGCCATCGGGAGGGCAGCGGAGGTCGC-TCTCCTAACAGAACGAGCACAC-GATGCGGTCAACCTATTCGTCGACAGCCAAGCGGCGATAAGATCCAT----------------------------------------------------------------------------------------------------
droAna3	scaffold_13250:802093-802332 -		GAGTCCATCA-GACTCCCT----GACCACTGCAGTGTTTTCCAGGCTGAAGTAGTATCCATTAGGGAAGCACTGGAATCCCC-AGATCTAAGAGGCAAT---CGG-GATACAATATGCATCTTCTCCGACAGTCAAGCAGCCCTTAAGGCACTGGACGG-ATTCTCGTCCAACTCCAG--GACAGTCAATGACTGTCGCAGATCTCTCAACGAGATGGCTGAACAGCATGACATCTACCTCATTTGGGTTCCC
droBip1	scf7180000392952:1249-1367 +		CACT--------------------------GTAGTGTGTTCCAAGCAGAAGTAATAGCTATCGGGGAAGC-ACTTAGATCACCAGCACTTACTGGCAAT---CAA-GACACAATATGTATCTTCTCAGACAGTCAAGCGGCACTCAAAGC-------------------------------------------------------------------------------------------------------
droKik1	scf7180000301114:16895-17136 -		AATACTTCCACC------TCCCGGAGTCAGCGACGGTTTTCCAGGCGGAGGTTCTCGCGATACTGAAAGCTGCCGAACTTTC-GCTAGACCGAGGCCTTCGGAAT-ACCAAGGTGAGGATATACTCAGATAGCCAGGCGGCGATCAAATCCCTCGCACA-AGCACGGACGACTTCAAA--ACTAGTGGCCAAATGCAAAGGGGCACTAAACAGACTCGCAGAGGACAACAGGGTACAAATAGCCTGGGTACCC
droFic1	scf7180000453269:861-1108 +		TCAAGTACCATGAATCTTTAGGACAACACACCAGCATATTCCAAGCTGAGGTGTGTGCCATAGGACGGTGTGCAGAGCTCAA-TATGAAGCGCGGGTACACAAAC-AAGGACATTACGATCCTCTCGGTCAGTCGAGCGGCAATTACTGCATTCCTTAG-TAATAGAATCACCTCGAG--GCTGGTTCGAGAAGTAAGAACAAAGTTAAACCTTCTGGGCAGCAACAACAGGCTGTCATTAAGATGGATTCCA
droEle1	scf7180000490765:28178-28426 +		TAAAATACCACGAATCCCTTGGCCAATACACCAGCATATTCCAGGCTGAGGTATGTGCCATTGGACGTTGTGCAGAGCTCAA-CATACAGCGTGGATACAAGGAA-AAGGACATATCGATCCTTTCGGACAGCCGAGCAGCAATTACTGCTTTACATAGACAACAAAATCACCTCGAA--GCTAGTCCTAGAGGTGAAGAGTAAGCTAAATATACTGGGCAGTCGAAACAGGCTGGCCCTCAGATGGATTCCG
droTak1	scf7180000413637:167-407 +		TATTTTA-------TCCCTTGGCCTATATACCAGCATATTCCAGGCTGAGGTATGTGCCATTGGACGTTGTGCAGAGCTCAA-CATACAGCGTGGATACAAGGAA-AAGGACATATCGATCCATTCGGACAGTCGAGCAGCAGTTACTGCTTTACATAG-TAACAAAATCACCTCGAA--GCTAGTCCTAGAGGTGAAGAGTAAGCTAAATATATTGGGCAGCCGAAACAGGCTGGCCCTCAGAAGGATTCCG
dm3	chrUextra:2033700-2033947 +		TAAAATACCACGAAAAAGTGGGCAGATACACCAGCATTTTTCAAGCTGAAGTCTGTGCTATTGGACGCTGTGCGGAGATTAA-TCTGCAAAGGAACTATCGTGAC-AAGGACATTTCTATACTGTCCGATAGTCAAGCAGCATTAAAGGCGCTCAGCAA-AGCTAAGATAACATCTAA--GCTAGTAAATGAAGTGAGGACAGCCCTAGACAAACTAGGAGCTGTCAACAAACTCACAATAAGGTTGGTCCCG
droSim2	3l:23333205-23333452 +		TAAAATACCACGAATCAATGGGCAGATACACCAGCATTTTTCAAGCTGAGGTCTGTGCTATTGGATGCTGTGCCGAGCTTAG-TCTGCAAAGGAACTATCGTGGC-AAGGACATTTCTATACTGTCTGATAGTCAAGCAGCCATGAAGGCGCTCAAGAA-AGCTAAGATAACATCTAA--GCTAGGAAATGAAGAGAGGACAGCCCTAGACAAACTGGGAGCTGTCAACAAACTCACAATAAGGTGGGTCCCG
droSec2	scaffold_180:40747-40993 +		TAAAATACCACGAATCAATGGGCAGATACACCAGCATTTTTCATGCTGAAGTCTGTGCTATTGGACGCTGTGCGGAGTTTAA-TCTGGAAAGGAACTATCGTGGC-AA-GACATTGCTATACTGTCTGATAGTCAAGCAGCCATAAACGCGCTCAGCAA-AGCTAAGATAACATCTAA--GCTAGTAAATGAAGTGAGGACAGCCCTAGACAAACTGGGAGCTGTCAACAAACTCACAATAAGGTGGGTCCCG
droYak3	v2_chr2h_random_026:344775-344894 -		C-------------------------------AGCATATTCCAGGCGGAAGTATTCGCCATAGGGAAAGCGGCAGAGCTTGC-GCAGAGCATTGACCGCCCACAT-GAAGCGGTCAACTTGTTCGTAGACAGTCAAGCGGCGATAAGATCCAT----------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TATTTTACCATGAATCCCTGGGAACGCACACCAGCATATTTCAGGCTGAGGTGTGTGCGATAGGGAGATGTGCGGACATCAA-CATAGAACGTAACTATCGGAATACGGGATATATCCATCCTATCCGATAGTCAAGCAGCATTGAAAGCTATAATGGG-GACTAAGATAACATCGAAAGGGTAGTCCATGAAGTTCGTTCAAAGCTAGACCTACTCGGGACTCACAACAGGCTCATCATACGACGGGTCCCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................GTGTGCGATAGGGAGATGTGCCC..................................................................................................................................................................................	23	20	0.05	1	1	0
...................................................................................................................TCCATCCTATCCGATAGTCAAGCAG.................................................................................................................	25	20	0.05	1	0	1

dp5

C-------------------------------AGCATATTCCAGGCAGAGGTTTTTGCCATCAGGAAAGCAGCAGAGGTCGC-TCTTCTCACTGAAAGAGCACAC-GATGCGGTCAATCTATTCGTCGACAGCCAAGCGGCAATCAGATCCAT----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................TATTCGTCGACAGCCAAGCGGC................................................................................................................	22	20	9.25	185	2	98	13	0	7	0	0	52	13	0
.......................................................................................................................TATTCGTCGACAGCCAAGCGGCAATC............................................................................................................	26	3	3.00	9	0	2	0	0	0	0	0	7	0	0
.......................................................................................................................TATTCGTCGACAGCCAAGCGG.................................................................................................................	21	20	2.95	59	0	0	2	0	7	0	0	38	11	1
.......................................................................................................................TATTCGTCGACAGCCAAGCGGCAA..............................................................................................................	24	6	2.17	13	0	4	0	0	0	0	0	9	0	0
.......................................................................................................................TATTCGTCGACAGCCAAGCGGCA...............................................................................................................	23	6	1.83	11	0	4	0	0	0	0	0	7	0	0
.......................................................................................................................TATTCGTCGACAGCCAAGCGGCAAT.............................................................................................................	25	6	1.33	8	0	3	0	0	0	0	0	4	1	0
.....................................................................................TTCTCACTGAAAGAGCACAC-GAT................................................................................................................................................	23	8	1.13	9	0	9	0	0	0	0	0	0	0	0
.....................................................................................TTCTCACTGAAAGAGCACAC-GA.................................................................................................................................................	22	8	1.00	8	0	8	0	0	0	0	0	0	0	0
.....................................................................................TTCTCACTGAAAGAGCACAC-GATG...............................................................................................................................................	24	8	1.00	8	0	8	0	0	0	0	0	0	0	0
.......................................................................................................................TATTCGTCGACAGCCAAGCG..................................................................................................................	20	20	0.90	18	0	10	0	0	0	0	1	6	1	0
........................................................GCCATCAGGAAAGCAGCAGAGG...............................................................................................................................................................................	22	19	0.63	12	0	8	0	0	1	0	0	3	0	0
........................................................................................................................ATTCGTCGACAGCCAAGCGGC................................................................................................................	21	20	0.60	12	0	12	0	0	0	0	0	0	0	0
............................................................................................................TGCGGTCAATCTATTCGTCGA............................................................................................................................	21	6	0.50	3	0	2	0	0	0	0	1	0	0	0
.........................................................................................................................TTCGTCGACAGCCAAGCGGCAATC............................................................................................................	24	4	0.50	2	0	1	0	0	0	0	0	1	0	0
.....................................................................................TTCTCACTGAAAGAGCACAC-GATGCGG............................................................................................................................................	27	8	0.50	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................ATTCGTCGACAGCCAAGCGG.................................................................................................................	20	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.....................................................TTTGCCATCAGGAAAGCAGCAGAGG...............................................................................................................................................................................	25	14	0.36	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................TTCGTCGACAGCCAAGCGGC................................................................................................................	20	20	0.35	7	0	7	0	0	0	0	0	0	0	0
......................................................................................TCTCACTGAAAGAGCACAC-GATGCGG............................................................................................................................................	26	10	0.30	3	0	2	0	0	0	0	0	1	0	0
...................................................................................TCTTCTCACTGAAAGAGCACAC-G..................................................................................................................................................	23	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TTCTCACTGAAAGAGCACAC-G..................................................................................................................................................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................TCGACAGCCAAGCGGCAATCA...........................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................TTCGTCGACAGCCAAGCGGCAATCAGA.........................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	1	0	0
....................................................................................CTTCTCACTGAAAGAGCACAC-GA.................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................TTCGTCGACAGCCAAGCGGCAATCAG..........................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0
....................................TATTCCAGGCAGAGGTTTTTGC...................................................................................................................................................................................................	22	18	0.22	4	0	2	0	0	0	0	0	2	0	0
........................................................GCCATCAGGAAAGCAGCAGAG................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................TCTCACTGAAAGAGCACAC-GATG...............................................................................................................................................	23	10	0.20	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................CTATTCGTCGACAGCCAAGCGGC................................................................................................................	23	20	0.20	4	0	2	0	0	0	0	0	2	0	0
.......................................................................................CTCACTGAAAGAGCACAC-GATGC..............................................................................................................................................	23	11	0.18	2	0	0	1	0	0	0	0	1	0	0
.................................................................................C-TCTTCTCACTGAAAGAGCACAC-GA.................................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................GATGCGGTCAATCTATTCGTCGAC...........................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	1	0	0	0
........................................................GCCATCAGGAAAGCAGCAGAGGT..............................................................................................................................................................................	23	19	0.16	3	0	1	2	0	0	0	0	0	0	0
............................................................TCAGGAAAGCAGCAGAGG...............................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.........................................................................................................................TTCGTCGACAGCCAAGCGGCAA..............................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................ATTCGTCGACAGCCAAGCGGCA...............................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................CACTGAAAGAGCACAC-GATG...............................................................................................................................................	20	14	0.14	2	0	2	0	0	0	0	0	0	0	0
........................................................................................TCACTGAAAGAGCACAC-GATGCGG............................................................................................................................................	24	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................GAGCACAC-GATGCGGTCAATCTATTC.................................................................................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................AGCACAC-GATGCGGTCAATCT.....................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................TCTTCTCACTGAAAGAGCACAC-GA.................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................GCGGTCAATCTATTCGTCGAC...........................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................GCACAC-GATGCGGTCAATCTA....................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................TTTGCCATCAGGAAAGCAGCAGA.................................................................................................................................................................................	23	16	0.13	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TTCTCACTGAAAGAGCACAC-GATGC..............................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TCGC-TCTTCTCACTGAAAGA..........................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	0	0	1	0	0
......................................................................................TCTCACTGAAAGAGCACAC-GATGCGGTC..........................................................................................................................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................TCCAGGCAGAGGTTTTTGCCATCAGG............................................................................................................................................................................................	26	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................ACAC-GATGCGGTCAATCTAT...................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................GCCATCAGGAAAGCAGCAGAGGTC.............................................................................................................................................................................	24	19	0.11	2	0	2	0	0	0	0	0	0	0	0
........................................................GCCATCAGGAAAGCAGCAGAGGTCG............................................................................................................................................................................	25	19	0.11	2	0	1	0	0	0	0	0	1	0	0
...................................................................................................GCACAC-GATGCGGTCAATT......................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TCTCACTGAAAGAGCACAC-GA.................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	1	0	0
.........................................................CCATCAGGAAAGCAGCAGAGGTC.............................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0
......................................................................................TCTCACTGAAAGAGCACAC-GAT................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................CTATTCGTCGACAGCCAAGCGG.................................................................................................................	22	20	0.10	2	0	0	1	0	0	0	0	1	0	0
.......................................................................................CTCACTGAAAGAGCACAC-GATGCG.............................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................CTCACTGAAAGAGCACAC-GATGCGGT...........................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TCACTGAAAGAGCACAC-GATGCGGTC..........................................................................................................................................	26	13	0.08	1	0	0	0	0	0	0	0	1	0	0
........................................................................................TCACTGAAAGAGCACAC-GA.................................................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................CAGGAAAGCAGCAGAGGTCGC-TCT.......................................................................................................................................................................	24	14	0.07	1	0	0	0	0	0	0	0	1	0	0
.....................................................TTTGCCATCAGGAAAGCAGCAGAG................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
......................................................TTGCCATCAGGAAAGCAGCAGAG................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................TGCCATCAGGAAAGCAGCAGAG................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
........................................................GCCATCAGGAAAGCAGCAA..................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................CTATTCGTCGACAGCCAAGCG..................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................ATTCCAGGCAGAGGTTTTTGCC..................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................ATTCGTCGACAGCCAAGC...................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................CATCAGGAAAGCAGCAGAGG...............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................CCATCAGGAAAGCAGCAGAGG...............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
............................................................TCAGGAAAGCAGCAGAGGTC.............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.............................................................CAGGAAAGCAGCAGAGGTCGC-T.........................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................TATTCGTCGACAGCCAAGC...................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................TTCGTCGACAGCCAAGCG..................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................CCATCAGGAAAGCAGCAGAGGTCGC-..........................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0

droPer2

TAAGCTACCG-------------GACCAATGCAGCATATTCCAGGCTGAAGTTTTTGCCATCGGGAGGGCAGCGGAGGTCGC-TCTCCTAACAGAACGAGCACAC-GATGCGGTCAACCTATTCGTCGACAGCCAAGCGGCGATAAGATCCAT----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................TCAACCTATTCGTCGACAGCCAAGC...................................................................................................................	25	20	0.60	12	0	12	0	0	0	0
.................................................................................................................TCAACCTATTCGTCGACAGCCAAG....................................................................................................................	24	20	0.40	8	0	8	0	0	0	0
.................................................................................................................TCAACCTATTCGTCGACAGCCAA.....................................................................................................................	23	20	0.25	5	0	5	0	0	0	0
.....TACCG-------------GACCAATGCAGCATATTCT...................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
.....................................................................................................ACAC-GATGCGGTCAACCTATT..................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
........................................................................................TAACAGAACGAGCACAC-GATG...............................................................................................................................................	21	15	0.07	1	0	0	0	0	0	1
......................................................................AGCGGAGGTCGC-TCTCCTAACAGAAC............................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0
.......................................................................GCGGAGGTCGC-TCTCCTAACAGAAC............................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0
...................................................................................................................AACCTATTCGTCGACAGCCAAGCGG.................................................................................................................	25	20	0.05	1	0	1	0	0	0	0

droAna3

GAGTCCATCA-GACTCCCT----GACCACTGCAGTGTTTTCCAGGCTGAAGTAGTATCCATTAGGGAAGCACTGGAATCCCC-AGATCTAAGAGGCAAT---CGG-GATACAATATGCATCTTCTCCGACAGTCAAGCAGCCCTTAAGGCACTGGACGG-ATTCTCGTCCAACTCCAG--GACAGTCAATGACTGTCGCAGATCTCTCAACGAGATGGCTGAACAGCATGACATCTACCTCATTTGGGTTCCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................CCGACAGTCAAGCAGCCCTTAAGGCACT....................................................................................................	28	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................ATGACATCTACCTCATTTGGGTTCC.	25	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................TGAACAGCATGACATCTACCTCATT.........	25	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................................GGCACTGGACGG-ATTCTCGTC....................................................................................	21	15	0.07	1	0	1	0	0	0	0
.....................................................................................................................................................................CGTCCAACTCCAG--GACAGTCAATGAC............................................................	26	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................CTCAACGAGATGGCTGAACAG...........................	21	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................GAACAGCATGACATCTACCTCATTTGGGT....	29	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................CTGAACAGCATGACATCTACCTCATTTG.......	28	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................CTGAACAGCATGACATCTACC..............	21	20	0.05	1	0	0	0	0	0	1
........................................................................................................G-GATACAATATGCATCTTCTCCGA............................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................ATGACATCTACCTCATTTGGGTT...	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................TTCTCCGACAGTCAAGCAGCCCT.............................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droBip1

CACT--------------------------GTAGTGTGTTCCAAGCAGAAGTAATAGCTATCGGGGAAGC-ACTTAGATCACCAGCACTTACTGGCAAT---CAA-GACACAATATGTATCTTCTCAGACAGTCAAGCGGCACTCAAAGC-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATACTTCCACC------TCCCGGAGTCAGCGACGGTTTTCCAGGCGGAGGTTCTCGCGATACTGAAAGCTGCCGAACTTTC-GCTAGACCGAGGCCTTCGGAAT-ACCAAGGTGAGGATATACTCAGATAGCCAGGCGGCGATCAAATCCCTCGCACA-AGCACGGACGACTTCAAA--ACTAGTGGCCAAATGCAAAGGGGCACTAAACAGACTCGCAGAGGACAACAGGGTACAAATAGCCTGGGTACCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCAAGTACCATGAATCTTTAGGACAACACACCAGCATATTCCAAGCTGAGGTGTGTGCCATAGGACGGTGTGCAGAGCTCAA-TATGAAGCGCGGGTACACAAAC-AAGGACATTACGATCCTCTCGGTCAGTCGAGCGGCAATTACTGCATTCCTTAG-TAATAGAATCACCTCGAG--GCTGGTTCGAGAAGTAAGAACAAAGTTAAACCTTCTGGGCAGCAACAACAGGCTGTCATTAAGATGGATTCCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAAAATACCACGAATCCCTTGGCCAATACACCAGCATATTCCAGGCTGAGGTATGTGCCATTGGACGTTGTGCAGAGCTCAA-CATACAGCGTGGATACAAGGAA-AAGGACATATCGATCCTTTCGGACAGCCGAGCAGCAATTACTGCTTTACATAGACAACAAAATCACCTCGAA--GCTAGTCCTAGAGGTGAAGAGTAAGCTAAATATACTGGGCAGTCGAAACAGGCTGGCCCTCAGATGGATTCCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATTTTA-------TCCCTTGGCCTATATACCAGCATATTCCAGGCTGAGGTATGTGCCATTGGACGTTGTGCAGAGCTCAA-CATACAGCGTGGATACAAGGAA-AAGGACATATCGATCCATTCGGACAGTCGAGCAGCAGTTACTGCTTTACATAG-TAACAAAATCACCTCGAA--GCTAGTCCTAGAGGTGAAGAGTAAGCTAAATATATTGGGCAGCCGAAACAGGCTGGCCCTCAGAAGGATTCCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAAAATACCACGAAAAAGTGGGCAGATACACCAGCATTTTTCAAGCTGAAGTCTGTGCTATTGGACGCTGTGCGGAGATTAA-TCTGCAAAGGAACTATCGTGAC-AAGGACATTTCTATACTGTCCGATAGTCAAGCAGCATTAAAGGCGCTCAGCAA-AGCTAAGATAACATCTAA--GCTAGTAAATGAAGTGAGGACAGCCCTAGACAAACTAGGAGCTGTCAACAAACTCACAATAAGGTTGGTCCCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................TAACATCTAA--GCTAGTAAATGAAG...........................................................	24	20	57.10	1142	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	1	0	0	0	0	0	0	4	0	1	0	0	0	1	1	0	0	6	4	5	0	14	6	14	0	16	0	0	0	0	4	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	4	0	0	0	0	0	6	9	20	20	33	7	27	18	23	8	3	21	35	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	136	11	0	0	0	0	0	0	0	58	2	0	0	0	0	0	0	0	0	0	71	8	10	91	19	146	0	0	35	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	32	6	0	0	0	0	0	0	0	62	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	22	36	0	0	0	0	0	0	0
........................................................................................................................................................................TAACATCTAA--GCTAGTAAATGAAGT..........................................................	25	20	39.40	788	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	1	0	12	4	4	0	8	5	0	2	0	5	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	7	9	0	0	0	0	0	0	0	0	0	9	0	0	2	0	29	159	228	66	43	57	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	6	0	0	0	0	1	3	8	2	11	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	0	0	0	0	0	0	0
........................................................................................................................................................................TAACATCTAA--GCTAGTAAATGAAGTGA........................................................	27	20	11.80	236	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	8	0	1	37	8	0	121	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	5	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TAACATCTAA--GCTAGTAAATGAA............................................................	23	20	10.85	217	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	22	0	1	2	0	0	0	0	6	0	5	0	2	5	0	2	4	4	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	17	0	1	5	3	26	29	3	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	9	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	3	0	0	0	0	0	0
.....................................................................................TGCAAAGGAACTATCGTGAC-AAGGA..............................................................................................................................................	25	10	9.80	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	4	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	5	4	6	3	21	15	25	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TGTGCTATTGGACGCTGTGCGG..................................................................................................................................................................................	22	20	9.75	195	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	3	0	0	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	28	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	25	2	0	2	0	3	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	1	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	2	0	0	34	24	37	0	0	0	0	0	0	0
.....................................................TGTGCTATTGGACGCTGTGCGGA.................................................................................................................................................................................	23	20	9.50	190	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	2	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	18	6	0	0	1	0	4	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	1	0	4	0	1	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	15	24	0	0	0	0	0	0	0
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..............................................TGAAGTCTGTGCTATTGGACGCTGTG.....................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTTTTCAAGCTGAAGTCTGTGCTAT................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GAAGTCTGTGCTATTGGACGCTGTGC....................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AAACTAGGAGCTGTCAACAAACT...................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................ACATCTAA--GCTAGTAAATGAAGTGAG.......................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AACATCTAA--GCTAGTAAATGAA............................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGAC-AAGGA..............................................................................................................................................	21	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TAAAATACCACGAATCAATGGGCAGATACACCAGCATTTTTCAAGCTGAGGTCTGTGCTATTGGATGCTGTGCCGAGCTTAG-TCTGCAAAGGAACTATCGTGGC-AAGGACATTTCTATACTGTCTGATAGTCAAGCAGCCATGAAGGCGCTCAAGAA-AGCTAAGATAACATCTAA--GCTAGGAAATGAAGAGAGGACAGCCCTAGACAAACTGGGAGCTGTCAACAAACTCACAATAAGGTGGGTCCCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGT........	24	20	311.15	6223	0	0	9	17	0	0	2367	3655	0	152	19	0	4	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACA............................................................................................................................................	23	20	109.45	2189	0	0	3	2	0	0	0	246	2	0	233	1	1702	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACAT...........................................................................................................................................	24	20	61.35	1227	0	0	0	5	232	0	1	714	13	133	129	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATT..........................................................................................................................................	25	20	35.00	700	0	0	0	0	0	0	0	0	4	14	13	0	589	80	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGAC.............................................................................................................................................	22	20	29.10	582	1	0	1	0	0	0	0	62	0	0	0	0	518	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTG.......	25	20	23.05	461	0	0	1	1	0	0	0	331	107	21	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACAA...........................................................................................................................................	24	20	20.75	415	0	0	0	0	0	0	0	1	0	0	0	0	414	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGGG.....	27	20	15.80	316	0	0	0	3	0	0	159	151	1	2	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGC....................................................................................................................................................................................	25	4	13.75	55	0	0	0	0	0	0	55	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACAC...........................................................................................................................................	24	20	13.70	274	0	0	1	0	0	0	0	0	0	13	1	0	236	23	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGG.........	23	20	12.20	244	0	0	0	0	0	0	0	125	91	27	1	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATTT.........................................................................................................................................	26	3	11.00	33	0	0	0	0	0	0	0	1	0	1	0	0	29	2	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATA..........................................................................................................................................	25	20	8.00	160	0	0	0	0	0	0	0	18	0	2	1	0	119	20	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGG......	26	20	7.20	144	0	0	0	2	0	0	45	63	16	8	2	0	8	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAA..............	18	20	5.40	108	0	0	0	0	108	0	0	0	0	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTG.....................................................................................................................................................................................	24	4	5.00	20	0	0	0	0	0	0	11	0	9	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGA..............................................................................................................................................	21	20	3.55	71	0	0	0	0	31	0	0	18	4	0	11	0	0	7	0	0	0
........................................................................................AAAGGAACTATCGTGGC-AAGGAC.............................................................................................................................................	23	20	3.45	69	0	0	0	0	30	0	2	13	0	7	0	0	16	1	0	0	0
.......................................................................................................................TACTGTCTGATAGTCAAGCAGCCA..............................................................................................................	24	20	2.95	59	0	0	0	6	35	0	0	0	0	3	14	0	1	0	0	0	0
....................GGCAGATACACCAGCATTTTTCAA.................................................................................................................................................................................................................	24	20	2.45	49	0	0	0	0	44	0	0	0	0	2	0	0	3	0	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAG....................................................................	18	20	2.45	49	0	0	0	0	49	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TACTGTCTGATAGTCAAGCA..................................................................................................................	20	20	2.30	46	0	0	0	0	40	0	0	6	0	0	0	0	0	0	0	0	0
.......................................................................................................................TACTGTCTGATAGTCAAGCAGCCAT.............................................................................................................	25	20	2.25	45	0	0	0	1	35	0	0	0	0	0	8	0	1	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATC..........................................................................................................................................	25	20	2.20	44	0	0	0	0	0	0	0	3	0	0	0	0	41	0	0	0	0
........................................................................................AAAGGAACTATCGTGGC-AAGGACA............................................................................................................................................	24	20	2.15	43	0	0	0	0	0	0	2	6	0	1	0	0	34	0	0	0	0
...........................................................................................................................GTCTGATAGTCAAGCAGC................................................................................................................	18	20	2.05	41	0	0	0	0	41	0	0	0	0	0	0	0	0	0	0	0	0
........CACGAATCAATGGGCAGATACACCA............................................................................................................................................................................................................................	25	20	2.00	40	0	0	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGGT.....	27	20	2.00	40	0	0	0	0	0	0	0	40	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCTGTCAACAAACTCACAATAAGGT........	26	20	1.90	38	0	0	0	0	0	0	5	26	0	5	2	0	0	0	0	0	0
.......................................................................................................................TACTGTCTGATAGTCAAGCAGCC...............................................................................................................	23	20	1.85	37	0	0	0	0	36	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................AAAGGAACTATCGTGGC-AAGGACAT...........................................................................................................................................	25	20	1.70	34	0	0	0	0	28	0	2	0	0	3	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGGA.....	27	20	1.70	34	0	0	0	1	0	0	15	15	1	1	0	0	0	1	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGGAAATGAA............................................................	26	3	1.67	5	0	0	0	1	0	0	0	0	0	1	3	0	0	0	0	0	0
...................................................................................TCTGCAAAGGAACTATCGTGGC-AAGGACA............................................................................................................................................	29	20	1.60	32	0	0	0	0	0	0	24	0	8	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGT......................................................................................................................................................................................	23	4	1.50	6	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-A..................................................................................................................................................	17	20	1.40	28	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCTGTCAACAAACTCACAATAAGG.........	25	20	1.25	25	0	0	0	0	0	0	3	18	3	1	0	0	0	0	0	0	0
.....................................................................................TGCAAAGGAACTATCGTGGC-AAGGACA............................................................................................................................................	27	20	1.20	24	0	0	0	0	0	0	11	5	3	0	0	0	5	0	0	0	0
..............................................................................................................................................................................................................TAGACAAACTGGGAGCTGTCAACAAAC....................	27	20	1.00	20	0	0	2	0	0	0	6	2	3	2	5	0	0	0	0	0	0
...............................................................................TAG-TCTGCAAAGGAACTATCGTGGC-A..................................................................................................................................................	26	3	1.00	3	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0
..............................................................................................................................TGATAGTCAAGCAGCCATGAAGGCGC.....................................................................................................	26	4	1.00	4	0	0	0	1	0	0	2	0	0	0	1	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGT....................................................................................................................................................................................	25	4	1.00	4	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGCC...................................................................................................................................................................................	26	4	1.00	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
...............................................................................TAG-TCTGCAAAGGAACTATCGTGGC-...................................................................................................................................................	25	3	1.00	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATTTA........................................................................................................................................	27	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAG.........................................................................................................	24	4	1.00	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGG...............................................................................................................................................	20	20	0.95	19	0	0	0	0	0	0	0	6	0	1	9	0	1	2	0	0	0
............................................................................................................................................................................................................................GCTGTCAACAAACTCACAATAAGGT........	25	20	0.95	19	0	0	0	0	0	0	2	17	0	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACAAC..........................................................................................................................................	25	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	16	3	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGAT.............................................................................................................................................	22	20	0.90	18	0	0	0	0	0	0	0	1	0	0	0	0	11	6	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGT......	26	20	0.85	17	0	0	0	0	0	0	5	6	4	1	0	0	1	0	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAGGCGC.....................................................................................................	28	4	0.75	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
..............................................TGAGGTCTGTGCTATTGGATGCTG.......................................................................................................................................................................................	24	4	0.75	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGC.........................................................................................................................................................................................	20	4	0.75	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TATACTGTCTGATAGTCAAGCAGCCA..............................................................................................................	26	20	0.75	15	0	0	0	5	0	0	0	0	2	2	3	0	3	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCT........................................................................................................................................................................................	21	4	0.75	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
..............................................TGAGGTCTGTGCTATTGGATGCT........................................................................................................................................................................................	23	4	0.75	3	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTG.......................................................................................................................................................................................	22	4	0.75	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGA............................................................................................................................................................................................	17	12	0.75	9	0	0	0	0	0	0	6	1	2	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACT............................................................................................................................................	23	20	0.75	15	0	0	0	0	0	0	0	4	0	0	2	0	0	9	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAGGCG......................................................................................................	27	4	0.75	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATG..........................................................................................................................................................................................	19	4	0.75	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATTTC........................................................................................................................................	27	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATTTT........................................................................................................................................	27	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................AGAGAGGACAGCCCTAGACAAACTG....................................	25	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................TGTGCTATTGGATGCTGTGCCGAGCT..............................................................................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
...................................................TCTGTGCTATTGGATGCTGTGCCGAGC...............................................................................................................................................................................	27	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGGAAATGA.............................................................	25	3	0.67	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAG..........	22	20	0.55	11	0	0	0	0	0	0	5	5	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGTCAACAAACTCACAATAAGGTGGG.....	26	20	0.55	11	0	0	0	0	0	0	1	4	1	5	0	0	0	0	0	0	0
......................................TTTCAAGCTGAGGTCTGT.....................................................................................................................................................................................................	18	11	0.55	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
.................................GCATTTTTCAAGCTGAGGTCT.......................................................................................................................................................................................................	21	11	0.55	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGTCAACAAACTCACAATAAGGT........	23	20	0.50	10	0	0	0	2	0	0	4	0	2	2	0	0	0	0	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAGG........................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGA....................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGGC-AAGGACATTTCTATACTGTTA..............................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGCT...................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAA..........................................................................................................	23	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-...................................................................................................................................................	16	20	0.45	9	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGAAT............................................................................................................................................	23	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	7	2	0	0	0
.................................................................................................ATCGTGGC-AAGGACAT...........................................................................................................................................	16	20	0.45	9	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGGGA....	28	20	0.40	8	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACACC..........................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	0	0
.....................................................................................TGCAAAGGAACTATCGTGGC-AAGGACAT...........................................................................................................................................	28	20	0.40	8	0	0	0	1	0	0	1	0	2	1	0	0	3	0	0	0	0
..........................................................................................AGGAACTATCGTGGC-AAGGACAT...........................................................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	1	0	4	2	0	0	0
................................................................................................................................................................................AA--GCTAGGAAATGAAGAGAGGACAG..................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................TAG-TCTGCAAAGGAACTATCGTGGC-AAGG...............................................................................................................................................	29	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................AACTATCGTGGC-AAGGACATTTC........................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................TGAAGAGAGGACAGCCCTAGACAAAC......................................	26	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................CTGTGCCGAGCTTAG-TCTGCA....................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................AGCTTAG-TCTGCAAAGGAACTATCGTGG.....................................................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................ATAACATCTAA--GCTAGGAAATGAAGAGA........................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................AG-TCTGCAAAGGAACTATCGTGGC-...................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................TTAG-TCTGCAAAGGAACTATC.........................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................CGAGCTTAG-TCTGCAAAGGAACTATC.........................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................TTAG-TCTGCAAAGGAACTATCGTGGC-A..................................................................................................................................................	27	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................AACTATCGTGGC-AAGGACATTTCTATA....................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................TGGATGCTGTGCCGAGCTTAG-TCTGCA....................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................AA--GCTAGGAAATGAAGAGA........................................................	19	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGAAGAGAGGACAGCCCTAGACAAACTG....................................	28	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................TTAG-TCTGCAAAGGAACTATCGTGGC-...................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................ATCGTGGC-AAGGACATTTC........................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGGAAATG..............................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................AA--GCTAGGAAATGAAGAGAGGA.....................................................	22	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGCAAAGGAACTATCGTGGC-AAGGAC.............................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGG........	24	20	0.30	6	0	0	0	1	0	0	1	4	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGGGTCCC.	31	20	0.30	6	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0
...................................................................................TCTGCAAAGGAACTATCGTGGC-AAGGA..............................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	2	3	0	1	0	0	0	0	0	0	0
.....................................................................................TGCAAAGGAACTATCGTGGC-AAGGA..............................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CTAGACAAACTGGGAG................................	16	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..........................................................................................AGGAACTATCGTGGC-AAGGACA............................................................................................................................................	22	20	0.30	6	0	0	1	0	0	0	0	1	0	0	0	0	4	0	0	0	0
......................................TTTCAAGCTGAGGTCTGTGCT..................................................................................................................................................................................................	21	11	0.27	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TGAGGTCTGTGCTATTGGATGCTGTGC....................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGCCG..................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGACATAA.........................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
................................................................................................................................ATAGTCAAGCAGCCATG............................................................................................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................GAGGTCTGTGCTATTGGATGCTGT......................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................GTGGC-AAGGACATTTCTATACTG.................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGCCGAG................................................................................................................................................................................	29	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAACT........................................................................................................	25	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................TCTGTGCTATTGGATGCTGTGCCGA.................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAGT........................................................................................................	25	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTGTGCCA..................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAGTCAAGCAGCCATGAAGGCGCTCA..................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGG.....................................................................................................................................................	15	20	0.25	5	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0
................................................AGGTCTGTGCTATTGGATGCTTGC.....................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................TGCTATTGGATGCTGTGCCGAG................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................GAGGTCTGTGCTATTGGATGCT........................................................................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CTGCAAAGGAACTATCGTGGC-...................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	3	0	0	2	0	0	0	0	0	0	0
..............................................TGAGGTCTGTGCTATTGGATGCTGTG.....................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................TTTCTATACTGTCTGATAGTCAAGC...................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................GAGGTCTGTGCTATTGGATGCG........................................................................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAGGC.......................................................................................................	26	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................TGAGGTCTGTGCTATTGGATGC.........................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................TGAGGTCTGTGCTATTGGATG..........................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TTCTATACTGTCTGATAGTCAAGCAGCCA..............................................................................................................	29	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................TCTGTGCTATTGGATGCTGTGCCGT.................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAGGCGA.....................................................................................................	28	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATA............	20	20	0.20	4	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0
.......................................................................................................................TACTGTCTGATAGTCAAGCAG.................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.....................................................TGTGCTATTGGATGCT........................................................................................................................................................................................	16	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................TACTGTCTGATAGTCAAGCAGC................................................................................................................	22	20	0.20	4	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGTGGGC....	28	20	0.20	4	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCT......................................................................	16	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
........................................................................................AAAGGAACTATCGTGGC-AAGGACATT..........................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0
........................................................................................AAAGGAACTATCGTGGC-AAGGACT............................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
....................................................CTGTGCTATTGGATGCTGT......................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................TTTTTCAAGCTGAGGTCTGTGCT..................................................................................................................................................................................................	23	11	0.18	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TTTTCAAGCTGAGGTCTGTGC...................................................................................................................................................................................................	21	11	0.18	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
....................................TTTTTCAAGCTGAGGTCTGTG....................................................................................................................................................................................................	21	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
............................................................................................................................TCTGATAGTCAAGCAGCCATGAAGA........................................................................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GAGGACAGCCCTAGACAAACTGGGA.................................	25	19	0.16	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GAGGACAGCCCTAGACAAACTGGGAGC...............................	27	19	0.16	3	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................GTCTGATAGTCAAGCAGCCA..............................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................AAAGGAACTATCGTGGC-AAGGAT.............................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGAA.............................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.......................................................................................................................................................................................................................TGGGAGCTGTCAACAAACTC..................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................AAGGAACTATCGTGGC-AAGGAAC............................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0

droSec2

TAAAATACCACGAATCAATGGGCAGATACACCAGCATTTTTCATGCTGAAGTCTGTGCTATTGGACGCTGTGCGGAGTTTAA-TCTGGAAAGGAACTATCGTGGC-AA-GACATTGCTATACTGTCTGATAGTCAAGCAGCCATAAACGCGCTCAGCAA-AGCTAAGATAACATCTAA--GCTAGTAAATGAAGTGAGGACAGCCCTAGACAAACTGGGAGCTGTCAACAAACTCACAATAAGGTGGGTCCCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................AAGGAACTATCGTGGC-AA-GACATTGC........................................................................................................................................	26	1	2.00	2	1	0	0	1
............................................................................GTTTAA-TCTGGAAAGGAACTATC.........................................................................................................................................................	23	1	1.00	1	1	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGTAAATGA.............................................................	25	20	0.90	18	18	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGTAAATG..............................................................	24	20	0.90	18	16	0	1	1
.............................................................................................................................................................................................................................CTGTCAACAAACTCACAATAAGGT........	24	20	0.70	14	12	1	0	1
.....................................................................................................................................................................AGATAACATCTAA--GCTAGTAAATGAAG...........................................................	27	20	0.55	11	11	0	0	0
..................................................................................................................................................................................................TGAGGACAGCCCTAGACAAACTGGG..................................	25	20	0.50	10	10	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGTAAATGAA............................................................	26	20	0.40	8	6	0	2	0
..................................................................................................................TGCTATACTGTCTGATAGTCAAGCAGC................................................................................................................	27	20	0.40	8	7	0	1	0
.................................................................................................................................TAGTCAAGCAGCCATAAACGCGCT....................................................................................................	24	3	0.33	1	1	0	0	0
.................................................................................................................................TAGTCAAGCAGCCATAAACGCGCTC...................................................................................................	25	3	0.33	1	1	0	0	0
..................................................................................................................................................................................................TGAGGACAGCCCTAGACAAACTGGGA.................................	26	20	0.30	6	5	0	1	0
....................GGCAGATACACCAGCATTTTTCATGC...............................................................................................................................................................................................................	26	4	0.25	1	1	0	0	0
.....................................................TGTGCTATTGGACGCTGTGCGGAGTT..............................................................................................................................................................................	26	20	0.25	5	0	3	1	1
..................................................................................................................................................................................................TGAGGACAGCCCTAGACAAACTGGGAG................................	27	20	0.20	4	3	0	1	0
.....................................................................................................................TATACTGTCTGATAGTCAAGCAGCCA..............................................................................................................	26	20	0.20	4	4	0	0	0
......................................................................................................................................................................GATAACATCTAA--GCTAGTAAATGAA............................................................	25	20	0.15	3	3	0	0	0
..............................................TGAAGTCTGTGCTATTGGACGCTGTGC....................................................................................................................................................................................	27	20	0.15	3	1	1	1	0
......................................................................................................................................................................GATAACATCTAA--GCTAGTAAATGAAG...........................................................	26	20	0.15	3	3	0	0	0
...................................................................................................................................................................................................GAGGACAGCCCTAGACAAACTGGG..................................	24	20	0.10	2	2	0	0	0
..................................................................................................................................................................................................TGAGGACAGCCCTAGACAAACTG....................................	23	20	0.10	2	1	0	1	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGTAAAT...............................................................	23	20	0.10	2	1	0	1	0
...........................................................................................................................................................................................................................AGCTGTCAACAAACTCACAATAAGGT........	26	20	0.10	2	2	0	0	0
..............................................TGAAGTCTGTGCTATTGGACGCTGT......................................................................................................................................................................................	25	20	0.10	2	2	0	0	0
......................................................................................................................................................................GATAACATCTAA--GCTAGTAAATGA.............................................................	24	20	0.10	2	2	0	0	0
...............................................GAAGTCTGTGCTATTGGACGCTGTGC....................................................................................................................................................................................	26	20	0.10	2	1	0	1	0
..................................................................................................................................................................................................TGAGGACAGCCCTAGACAAAC......................................	21	20	0.10	2	2	0	0	0
..................................................................................................................................................................................................TGAGGACAGCCCTAGACAAACTGGGAGC...............................	28	20	0.10	2	2	0	0	0
.....................................................TGTGCTATTGGACGCTGTGCGGAGT...............................................................................................................................................................................	25	20	0.10	2	0	0	2	0
.....................................................................................................................................................................................................................ACTGGGAGCTGTCAACAAACTCACAATA............	28	20	0.05	1	1	0	0	0
............................................................................................................................................................................................ATGAAGTGAGGACAGCCCTAG............................................	21	20	0.05	1	0	1	0	0
..............................................................................................................................................................................................................................TGTCAACAAACTCACAATAAGGT........	23	20	0.05	1	1	0	0	0
.................................................AGTCTGTGCTATTGGACGCTGTGC....................................................................................................................................................................................	24	20	0.05	1	0	0	0	1
..............................................................................................................................................................................................................................TGTCAACAAACTCACAATAAGGTGG......	25	20	0.05	1	1	0	0	0
...............................................GAAGTCTGTGCTATTGGACGCTGTG.....................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
....................................................................................................................................................GCGCTCAGCAA-AGCTAAGATAACATC..............................................................................	26	20	0.05	1	1	0	0	0
........................................................................................................................................................................TAACATCTAA--GCTAGTAAATG..............................................................	21	20	0.05	1	1	0	0	0
................................................................................................................................................................................................................GACAAACTGGGAGCTGTCAACAAACTCA.................	28	20	0.05	1	1	0	0	0
.................................................AGTCTGTGCTATTGGACGCTGTG.....................................................................................................................................................................................	23	20	0.05	1	0	0	1	0
...................................................TCTGTGCTATTGGACGCTGTGCGGAG................................................................................................................................................................................	26	20	0.05	1	0	0	1	0
.................................................................................................................TTGCTATACTGTCTGATAGTCAAGC...................................................................................................................	25	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................GTGAGGACAGCCCTAGAC..........................................	18	20	0.05	1	1	0	0	0
..................................................................................................................TGCTATACTGTCTGATAGTCAAG....................................................................................................................	23	20	0.05	1	1	0	0	0
.......................................................................................................................................................................ATAACATCTAA--GCTAGTAAATGAAG...........................................................	25	20	0.05	1	1	0	0	0
.............................................CTGAAGTCTGTGCTATTGGA............................................................................................................................................................................................	20	20	0.05	1	0	1	0	0
..............................................................................................................................................................................................GAAGTGAGGACAGCCCTAGAC..........................................	21	20	0.05	1	0	0	0	1
..................................................................................................................TGCTATACTGTCTGATAGTCAAGCA..................................................................................................................	25	20	0.05	1	1	0	0	0
...............................................GAAGTCTGTGCTATTGGACGC.........................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
..............................................................................................................................................................................................................................TGTCAACAAACTCACAATAAGG.........	22	20	0.05	1	1	0	0	0
.AAAATACCACGAATCAATGGGCAGATA.................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
.....................................................................................................................................................................AGATAACATCTAA--GCTAGTAAATGAAGT..........................................................	28	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................TGAAGTGAGGACAGCCCTAGACAAAC......................................	26	20	0.05	1	1	0	0	0
..............................................................................................................................................................................................................TAGACAAACTGGGAGCTGTCAACAAACTC..................	29	20	0.05	1	1	0	0	0
....................GGCAGATACACCAGCATTTTTCA..................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
...................................................TCTGTGCTATTGGACGCTGTGCGGAGT...............................................................................................................................................................................	27	20	0.05	1	0	0	1	0
............................................GCTGAAGTCTGTGCTATTGG.............................................................................................................................................................................................	20	20	0.05	1	1	0	0	0
..........................................................TATTGGACGCTGTGCGGAGTTTAA-TC........................................................................................................................................................................	26	20	0.05	1	1	0	0	0
..............................................TGAAGTCTGTGCTATTGGACGCTGTG.....................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.................................................AGTCTGTGCTATTGGACGCTGTGCGG..................................................................................................................................................................................	26	20	0.05	1	0	1	0	0
............................................GCTGAAGTCTGTGCTATTGGA............................................................................................................................................................................................	21	20	0.05	1	0	0	0	1
..............................................TGAAGTCTGTGCTATTGGACGCTG.......................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
.............................................CTGAAGTCTGTGCTATTGGACGC.........................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
...................................................................................................................................................................................................GAGGACAGCCCTAGACAAACTGGGA.................................	25	20	0.05	1	1	0	0	0
.....................................................TGTGCTATTGGACGCTGTGCGGAG................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
...........................................................................................................................................................................................................................AGCTGTCAACAAACTCACAATAAGG.........	25	20	0.05	1	1	0	0	0
................................................................................................................................................................................................AGTGAGGACAGCCCTAGACAAACTGG...................................	26	20	0.05	1	1	0	0	0
.........................................................................................................................................................................................TAAATGAAGTGAGGACAGCCCTAGACA.........................................	27	20	0.05	1	0	0	1	0
.....TACCACGAATCAATGGGCAGATACACC.............................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0

droYak3

C-------------------------------AGCATATTCCAGGCGGAAGTATTCGCCATAGGGAAAGCGGCAGAGCTTGC-GCAGAGCATTGACCGCCCACAT-GAAGCGGTCAACTTGTTCGTAGACAGTCAAGCGGCGATAAGATCCAT----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................TAGACAGTCAAGCGGCGATAAGAT........................................................................................................	24	19	0.32	6	0	2	0	0	0	0	0	0	0	0	4
.............................................................................................................................TAGACAGTCAAGCGGCGATAAGATC.......................................................................................................	25	19	0.21	4	0	4	0	0	0	0	0	0	0	0	0
.............................................................................................................................TAGACAGTCAAGCGGCGATAAGA.........................................................................................................	23	19	0.21	4	0	2	0	0	0	0	2	0	0	0	0
......................................................TCGCCATAGGGAAAGCGGCAGAGCTTG............................................................................................................................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................CGCCATAGGGAAAGCGGCAGA.................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................CCCACAT-GAAGCGGTCAACTTGTTC.................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................TCAACTTGTTCGTAGACAGTCAAGCGGC................................................................................................................	28	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................GCCCACAT-GAAGCGGTCAACTTG....................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................CCCACAT-GAAGCGGTCAACTTGTT..................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................CCCACAT-GAAGCGGTCAACTTGT...................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.................................GCATATTCCAGGCGGAAGTATTCGCC..................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..................................CATATTCCAGGCGGAAGTATTCGC...................................................................................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.................................GCATATTCCAGGCGGAAGTATTCGCCAT................................................................................................................................................................................................	28	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.................................GCATATTCCAGGCGGAAGTATTCG....................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TAGACAGTCAAGCGGCGATAAG..........................................................................................................	22	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0
C-------------------------------AGCATATTCCAGGCGGAAGTATTC.....................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................TAGACAGTCAAGCGGCGATAAGATCC......................................................................................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................GCATATTCCAGGCGGAAGTATTC.....................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................GCATATTCCAGGCGGAAGTAT.......................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

dgr_400

scaffold_15127:3435-3585 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.8	-35.7	-35.6