dgr_382

CDS [Dgri\GH13525-cds]; exon [dgri_GLEANR_13433:2]; exon [dgri_GLEANR_13433:3]; CDS [Dgri\GH13525-cds]; intron [Dgri\GH13525-in]; Antisense to intron [Dgri\GH13395-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

GTCATGCCGGCCTGACGGCGTAGGGAAGAAGGGGGTCTACGGCCCTGACCCACGCCGAGAGTTTGTGTCGGTTGTTGTCGTCGTCGTCGTCGTCGTCGTAGTCGTCGTCGTTGTCGTCGTCCAATCAGTCCTTTACGGGTGTCTAAACGCGTTTAGCAGACCAGGGTCAAGTGGCGTGCTGCTCCTTCTGCTA ************************************************(((.(((........((((((..........((.((....((.((.((....)).)).))....)).)).)))).))........))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
..................CGTAGGTATGAAGGGGGCCT...........................................................................................................................................................	20	3	1	3.00	3	2	1
..................CGTAGGTATGAAGGGGGCC............................................................................................................................................................	19	3	5	1.60	8	8	0
..................CGTTGGTAAGAAGGGGGCCT...........................................................................................................................................................	20	3	2	1.50	3	2	1
...................GTTGGTATGAAGGGGGTC............................................................................................................................................................	18	3	20	1.40	28	26	2
..................CGTTGGTATGAAGGGGGTCT...........................................................................................................................................................	20	3	6	1.33	8	8	0
..................CGTTGGTATGAAGGGGGTC............................................................................................................................................................	19	3	15	1.33	20	16	4
...................GTTGGTATGAAGGGGGTCT...........................................................................................................................................................	19	3	11	1.18	13	13	0
.................GCGTTGGTATGAAGGGGGTCT...........................................................................................................................................................	21	3	1	1.00	1	1	0
..................CGTTGGTAAGAAGGGGGCC............................................................................................................................................................	19	3	8	1.00	8	5	3
...................GTAGGTATGAAGGGGGCC............................................................................................................................................................	18	3	16	0.63	10	8	2
..................CGTAGGTAAGAAGGGGGCCTC..........................................................................................................................................................	21	3	2	0.50	1	1	0
...................GTAGGTATGAAGGGGGCCT...........................................................................................................................................................	19	3	5	0.40	2	2	0
..................CGTAGGTATGAAGGGGGT.............................................................................................................................................................	18	2	3	0.33	1	1	0
.................GCGTTGGTAAGAAGGGGG..............................................................................................................................................................	18	2	5	0.20	1	1	0
....................TAGGTATGAAGGGGGCCT...........................................................................................................................................................	18	3	14	0.14	2	0	2
...................GTAGCTATGAAGGGGGTCT...........................................................................................................................................................	19	3	9	0.11	1	1	0
....................TTGGGATGAAGGGGGCCT...........................................................................................................................................................	18	3	14	0.07	1	1	0

Species	Coordinate	ID	Alignment
droGri2	scaffold_15126:1132305-1132497 +	dgr_382	CAGTACGGCCGGACTG--C-CG-CAT-----CCCTTC------------TT-------------------CCCCCAGATGCCGGGACTGGGTGCGGCTC--------TCAAACAC------------------------------------------------------------A-GCCAAC---------AACAGCAGCAGC-AG---CAGCAGCAGCA---T---------------------------CAGCAGC---AG--C---AACA---GCAGCAGG---------------------------------------------------------------------------------------------TTAGTCAGGAAA----TGCCCACAG------------------------------------------------ATTTG-------CGCAAA-------------------------------------------------T-C----------------GTCTGGT-----------C----------CCAG--TTCACCGCACGACGAGGAAGACGAT
droVir3	scaffold_12963:2099161-2099308 +		CAGTACCGCCGGCTTG--C-CG-CAT-----CCGTTT------------TT-------------------CCCCCAGATGCCGGGGCTGGGTGCGGCAC--------TGAAGCACACG-------------------------------------------------------------CACG---------ATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTCAGGACA----TGCCCACGG------------------------------------------------ATTTG-------CGCAAG-------------------------------------------------T-C----------------TTCGGGT-----------C----------CCAG--CTCTCCCCACGAGGAGGAAGACAAC
droMoj3	scaffold_6500:27252822-27253017 +		CAGCGCGGCAGGACTG--C-CG-CAT-----CCCTTC------------TT-------------------CCCCCAGATGCCAGGGCTGGGCGCGGCAC--------TGAAGCACACA-------------------------------------------------------------CAGC---------AGCAGCAGCAGC-AG---CAGCAGCAACAACAACAA------------------------CAACAGC---AA--C---AGCA---GCAACAA------------------------------------------------------------------------------------------------AATCAGGAGA----TGCCCACGG------------------------------------------------ATCTG-------CGCAAG-------------------------------------------------T-C----------------CTCAGGT-----------C----------CTAG--TTCGCCGCATGAGGAGGAAGCCGAG
droWil2	scf2_1100000004511:8238140-8238288 +		GGCTACT------------------------------------------------------------------------------------------------------TAGCAAATA-------------------------------------------------------------CAGC---------AGCAGCAGCAGC-AG---CAGCAGC------------------------------------AGCAG--------C------A---GGAGAAG--------------------------------------------------------------------------TCAGCAGCCAGG--------GGACTTAAAAACTCGCTCCCCAGACAATTGCCACATCATGCTTGTTTGCGTGCACATTAACGCCG-----------------------------------------------------------------------------------------------------------------------------------------ACGACGATGAAGATGAA
dp5	4_group3:6651666-6651841 +		CCCCA--GCCACACCG--C-CC-CC---------------------------------------------------------------------------------------------ATCCGCCCTGGGTCT-----------------------------G---GCCCAGCACC-AGCA--CCATCT-CCACCACCAACAA-------CAACAGCAGCAGCAGCAA------------------------CAGCAGC---AG--C---AGCA---GCACTACGC----C-CT--CAAATG----------------------GAACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCCAGACCTCGATA--------CTCAGCTCGTTCCGGCACCT--G----CGCGACGAGGA---GGAC
droPer2	scaffold_0:6739365-6739545 -		TGTTCCGCCGGGTCCG--C-CG-CCA-----C---------CACCGTTCCTTGCC------GC----CCAGTTCCAAA---------TGGCCGCCGCCC--------T------------------------------------------------------G---GCCCACCATC----------------ACCAGCAGCAG-CAG---CAGCAGCAGCAGCAACAA------------------------CAGCAG--------CAGCAGCA---TCCTCATC------C--GC-------------------------------------------------------------------------------------------CCG----TGCCAACAG------------------------------------------------GACCG-------C-CGCA-------------------------------------------------T-G----------------GTCCGCCCCCGCATCTGCC----------------------------------GCCCGGC
droAna3	scaffold_12943:926299-926472 -		CGGCATGGTCAGCCAG--G-GG-CAG-----CCCAGC------------CA-------------------CGCCCAGGTGAT------CAG---CGCCA--------TCAATCAGATG-------------------------------------------------------------TACC---------ATCAGCAGCAAC-AC---CAGCAGCAGCAGCAACAG------------------------CCGTCGC-----AGC---AACA---GAGCAAC------C-CG--CAAATG----------------------AA-----------TCCTGCATATCAGTTCCAGCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGGGCCAGGCCAA
droBip1	scf7180000394524:3350-3527 +		TGGTGTGGCCGGGATGAAT-GG-CAA-----C---------CAC----------------CTGGCAG---GCATCAA----------------------------------------------------------------CTTCAACATGGACATGGCGGCGGCTGCCTACCAGC----------------AGCAACAGCAG-CAG---CAACAGCAGAAGCATCCC------------------------CAACAGC---AG--C---AGCA---GCAGCAGG------C--GC-------A-------------------------------------------------------CAACAACGGATTCAACGTGGCC----------------------G---------------------------------------------------------------------------------------------------------------------------ACTTCAGTA--------------------------------------------------TGGCCGGATTC
droKik1	scf7180000302390:602936-603121 -		CAACTCGCCGGTCCAT---------------------GTACTGGCGGCTCCCCCC------TC----ATATCCCCAGAAGTCAGC---------GGCAG--------T------------------------------------------------------G---GTGCAGCAGC-AGCA--GCAAGCGGCAGCAGCGGC-A-------CAGCAGCAGCAGCACCAC------------------------CACCAGCAGCAT--C------AGCACCAGCAGTCCAAGCC--AC-------------------------------CG-----------------------------ACGCCA--------------------------------------------------------------------------------------------------------A-------------------------------------------------C-C----------------ACGCCGC-----------C----------TCTG--CTTAGCG------GAGGA--GGAGT
droFic1	scf7180000454073:2496309-2496497 -		CAATGCGACTGGAATG--C-GC-CAGCCCAC------GCAG-----------------------------------------------------------------CTGATGC-----AGCCCAATCT----------------------------------G---ATGCAGCAGC----------------AGCAGCAGCAA-CAG---CAGCAGCAGCAGCAACAA------------------------CAACAGC-----AGC---AACA---GCAGCAGC------A--GC-------AGA-TGATGGGCCTGGGCGG-----------------------------------ACCCAACCA--------------------------------------------------GCTGGGCGGCGGACAAATGTCCGTCGGCGGACAGCACGGCGGC---------------------------------------------------------------------------------------------------------------------------------------AT
droEle1	scf7180000491006:115208-115401 -		CACTACGGCGGAC-TG--CT-GGTGA-CCCC------GACG-----------------------------------------------------------------GCCAAGC-----CGCCGCAGGAGATCTGCCACCATCAT-------------------------------C-------------------ACCAGCAC-CAGCAG------------CAGTCACAGCAGCAACAGCAACA---TGCACAGCAGC-----AGC---AACA---GCAACATG------C-------------------------------ACAGCA-----------------------------GCAGCAGCGAATGCACCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGAGTATTGCCGCCC-----------------GCCTGCCCAC
droRho1	scf7180000777214:473823-473982 -		CGTATCGCCCCCACTG--C-CG-C------------------------------CGTACATGCCGAC---------------------------GG--------------------------------------------------------------------------CCCCGC----------------AGCAACAGCAA-CAG---CAGCAGCAGCAGCAACAA------------------------CAACAGC---AG--C---AGCA---GCAACAGT------T--GC-------TGAACGGACGGCCTAGTCCG-----------------------------------ACGGCATCGGGGTCGTCG----------------------------------------------------GGCGGCC-----------------------------------------------------------------------------------------------------------------------------------GCTC--CTCGGCGC------------ATTCC
droBia1	scf7180000301547:15695-15921 +		CACCCCAGCAGCAACA---------------------GCAGC------------AGCAACCGCCCAC---GCCCCAG----------------------------------------------------------------CAG-------------------------------C-------------------AGCAGGTG-CAGCAG------------CAAGCACAGCAGGCGCAACAGCA---GGCGCAGCAGC-----AGC---AACA---GCAGCA---------------------------------------------------------------------------GCAGCAGAGTCAGCAGCAGGCTC----------------------GACTGCCGCAG------------------------------------------CATTATCCGCAGGCTCCTGGCCAGCATCCGTTGTATCCGGGGGTGGGAGCACCCGCCGTCCAAGCGGGACAACCTCC--------------------------------------------CAC----------TCCCCAG
droTak1	scf7180000415254:730498-730666 -		AGGAGTGGTCGGTCAG--G-TG-CCT-----CCCTAC------------GC-------------------CCGACAGCAGTCGGC--GGGAGGCGGCAAGCCGGGCGTCTTGAACA------------------------------------------------------CGCAGC----------------AACAATTCCAG-CAG---CAACAGCAGCAGCAACAA------------------------CAGCAG--------CAACAGCT---GAGGCAC------C-AG--CAAATG----------------------ATGCA-----------------------------GATGCAGGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGTGGC
droEug1	scf7180000409533:177813-177992 +		CAGTGAGCAGCGGTTG--A-AG-CGT-----CGCTGC---------------------------------------------------------------------------------TGCCGCAGAAAAT--GGCC----------------------------------GCAGC----------------GACAACAGCAG-CAG---CAACAGCAGCAGCAATAA---------------------CAATAGCAGC-----AAC---ATCG---GCAACA-----------GC-AAT--A--------------------GCAACATGAATGAAA--------------------CCTGCAGC-----CACGTTGCAC----------------------GG------------------------------CAACGCCG---------------------------------------------------------------------------------------------------------------ATGAT-----------------GATAACGATGATAATGACAAT
dm3	chrX:13417130-13417303 +		CACTACGGCGGCC-TG--CT-GGTGA-CCTC------GACG-----------------------------------------------------------------GCCAAGC-----AGCCGCAGGAGATCTGTCACCATCAT-------------------------------C-------------------ACCAGCAT-CAGCAG------------CAGCATCAGCAGCAGCATCAGCAGCAGCAGCAGCAGC---AG--C---AGCA---GCAACA----------------------------------------GCAACA-----------------------------GCAGCAGCGCATGCACCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGA-------------------------------------GT
droSim2	x:12753865-12754048 +		CACTACGGCGGCC-TG--CT-GGTGA-CCTC------GACG-----------------------------------------------------------------GCGAAGC-----AGCCGCAGGAGATCTGTCACCATCAT-------------------------------C-------------------ACCAGCAT-CAG---CAGCAGCAGCAGCAACA---------------------TGCACAGCAGC-----AGC---AACA---GCAACA---------------------------------------------------------------------------GCAGCAGCGCATGCACCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGAGTATTGCAGCACGT--TTGCCCGC---GATGAA----GG
droSec2	scaffold_20:49874-50057 +		CACTACGGCGGCC-TG--CT-GGTGA-CCTC------GACG-----------------------------------------------------------------GCGAAGC-----AGCCGCAGGAGATCTGTCACCATCAT-------------------------------C-------------------ACCAGCAT-CAG---CAGCAGCAGCAGCAACA---------------------TGCACAGCAGC-----AGC---AACA---GCAACA---------------------------------------------------------------------------GCAGCAGCGCCTGCAGCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGAGTATTGCTGCACGT--TTGCCCGC---GATGAA----GG
droYak3	3R:11629588-11629758 +		CGCATCC--------------------------CTCC------------CT-------------------GCCCG--------------------------------TCATGC-----AGCAGCAC---------CACCTGCAG-------------------------------C-------------------AGCAGCAA-CAGCAG------------CAACAACAGCAGCAGCAGCAGCA---GGAGCAGCAGC-----ATC---TGCA---GGAGCAG---------------C--A--------------------GCAGCATCT--------------------------GCAGCAACTGCACCACCATGCGC----------------------AC---------------------------------------------------CACCAC-----------------------------------------------------------------------------------------CTGCC----------TCAGC-CTCTCCACACCAC----------CA
droEre2	scaffold_4770:1184505-1184675 -		CGCCACAGCCATGCGG--C-GG-CGA-CCCA------AACG---------------------------------CAGG------TCGCCGC---CGCCG--------------------------------------------T------------------T---GC-CAACAGCAGACAAC---------AACAACAGCAAC-AA---CAGCAGCAGCAGCAGCAG------------------------CAACAAC---AG--C---AGCA---GCAACAGA------C--GGCAAG------------------------CAGCA-----------------------------ACAGCAACGCA----G--------------------------------------------------------CGCCC--------------------------------------------------------------------------------------------GCTCCA----------------------------------------TCGCCG------CAGAAGGACTAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

CAGTACGGCCGGACTG--C-CG-CAT-----CCCTTC------------TT-------------------CCCCCAGATGCCGGGACTGGGTGCGGCTC--------TCAAACAC------------------------------------------------------------A-GCCAAC---------AACAGCAGCAGC-AG---CAGCAGCAGCA---T---------------------------CAGCAGC---AG--C---AACA---GCAGCAGG---------------------------------------------------------------------------------------------TTAGTCAGGAAA----TGCCCACAG------------------------------------------------ATTTG-------CGCAAA-------------------------------------------------T-C----------------GTCTGGT-----------C----------CCAG--TTCACCGCACGACGAGGAAGACGAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droVir3

CAGTACCGCCGGCTTG--C-CG-CAT-----CCGTTT------------TT-------------------CCCCCAGATGCCGGGGCTGGGTGCGGCAC--------TGAAGCACACG-------------------------------------------------------------CACG---------ATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTCAGGACA----TGCCCACGG------------------------------------------------ATTTG-------CGCAAG-------------------------------------------------T-C----------------TTCGGGT-----------C----------CCAG--CTCTCCCCACGAGGAGGAAGACAAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........GCTTG--C-CG-CAT-----CCGTTT------------TT-------------------CCCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ACG-------------------------------------------------------------CACG---------ATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTCAGGA.................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGCGCGGCAGGACTG--C-CG-CAT-----CCCTTC------------TT-------------------CCCCCAGATGCCAGGGCTGGGCGCGGCAC--------TGAAGCACACA-------------------------------------------------------------CAGC---------AGCAGCAGCAGC-AG---CAGCAGCAACAACAACAA------------------------CAACAGC---AA--C---AGCA---GCAACAA------------------------------------------------------------------------------------------------AATCAGGAGA----TGCCCACGG------------------------------------------------ATCTG-------CGCAAG-------------------------------------------------T-C----------------CTCAGGT-----------C----------CTAG--TTCGCCGCATGAGGAGGAAGCCGAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................TCAGGAGA----TGCCCACGG------------------------------------------------AT................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
.............................................................................ATGCCAGGGCTGGGCGCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................AGCAGCAACAACAACAA------------------------CAACAGC---A..............................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CAACAA------------------------CAACAGC---AA--C---AGCA---GCAACA..........................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................CAACAACAA------------------------CAACAGC---AA--C---AGCA---GCAA............................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...................................................................................................................ACA-------------------------------------------------------------CAGC---------AGCAGCAGCAGC-A.......................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CAACAA------------------------CAACAGC---AA--C---AGCA---................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................AACAA------------------------CAACAGC---AA--C---AGCA---GCA.............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................GCAGCAACAACAACAA------------------------CAACAGC---...............................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................AGCAGCAACAACAACAA------------------------CAAC.....................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droWil2

GGCTACT------------------------------------------------------------------------------------------------------TAGCAAATA-------------------------------------------------------------CAGC---------AGCAGCAGCAGC-AG---CAGCAGC------------------------------------AGCAG--------C------A---GGAGAAG--------------------------------------------------------------------------TCAGCAGCCAGG--------GGACTTAAAAACTCGCTCCCCAGACAATTGCCACATCATGCTTGTTTGCGTGCACATTAACGCCG-----------------------------------------------------------------------------------------------------------------------------------------ACGACGATGAAGATGAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................GC------------------------------------AGCAG--------C------A---GGAGAAG--------------------------------------------------------------------------TC.............................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	2
....................................................................................................................................................................................................................GCAGC------------------------------------AGCAG--------C------A---GGAGAAG--------------------------------------------------------------------------TC.............................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	1
.........................................................................................................................................................................................................AGC-AG---CAGCAGC------------------------------------AGCAG--------C------A---................................................................................................................................................................................................................................................................................................................................	19	20	0.30	6	0	0	0	6	0
...................................................................................................................ATA-------------------------------------------------------------CAGC---------AGCAGCAGCAGC-AG---CA.................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	1	0
.....................................................................................................................A-------------------------------------------------------------CAGC---------AGCAGCAGCAGC-AG---CAGCA..............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................CAGC-AG---CAGCAGC------------------------------------AGCAG--------C------....................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0

dp5

CCCCA--GCCACACCG--C-CC-CC---------------------------------------------------------------------------------------------ATCCGCCCTGGGTCT-----------------------------G---GCCCAGCACC-AGCA--CCATCT-CCACCACCAACAA-------CAACAGCAGCAGCAGCAA------------------------CAGCAGC---AG--C---AGCA---GCACTACGC----C-CT--CAAATG----------------------GAACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCCAGACCTCGATA--------CTCAGCTCGTTCCGGCACCT--G----CGCGACGAGGA---GGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................CACCAACAA-------CAACAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------CTCAGCTCGTTCCGGCACCT--.......................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAACAA-------CAACAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	1	0	2	0	0	0	0	0
....................................................................................................................................................................................................................ACAGCAGCAGCAGCAA------------------------CA.......................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	2	0	0	0	0	0
......................................................................................................................................................................................................AACAA-------CAACAGCAGCAGCAGCAA------------------------CAG......................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAACAA-------CAACAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................CAACAA-------CAACAGCAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAACAA-------CAACAGCAGCAGCAGCAA------------------------C........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................AACAA-------CAACAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAGCAGCAGCAGCAA------------------------CAGCAG...................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................CAA------------------------CAGCAGC---AG--C---AGCA---GC..............................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................ACAGCAGCAGCAGCAA------------------------CAGCAGC---A..............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

TGTTCCGCCGGGTCCG--C-CG-CCA-----C---------CACCGTTCCTTGCC------GC----CCAGTTCCAAA---------TGGCCGCCGCCC--------T------------------------------------------------------G---GCCCACCATC----------------ACCAGCAGCAG-CAG---CAGCAGCAGCAGCAACAA------------------------CAGCAG--------CAGCAGCA---TCCTCATC------C--GC-------------------------------------------------------------------------------------------CCG----TGCCAACAG------------------------------------------------GACCG-------C-CGCA-------------------------------------------------T-G----------------GTCCGCCCCCGCATCTGCC----------------------------------GCCCGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................AGCAGCAACAA------------------------CAGCAG--------C..........................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................................AGCAACAA------------------------CAGCAG--------CAGCAGC....................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................C----------------ACCAGCAGCAG-CAG---CAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0

droAna3

CGGCATGGTCAGCCAG--G-GG-CAG-----CCCAGC------------CA-------------------CGCCCAGGTGAT------CAG---CGCCA--------TCAATCAGATG-------------------------------------------------------------TACC---------ATCAGCAGCAAC-AC---CAGCAGCAGCAGCAACAG------------------------CCGTCGC-----AGC---AACA---GAGCAAC------C-CG--CAAATG----------------------AA-----------TCCTGCATATCAGTTCCAGCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGGGCCAGGCCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................GCCCAGGTGAT------CAG---CGCCA--------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5
.......................................................................GCCCAGGTGAT------CAG---CGCCA--------TC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	2	0	0	0	0	1
......................................................................CGCCCAGGTGAT------CAG---CGCCA--------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.........................G-----CCCAGC------------CA-------------------CGCCCAGGTGAT------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	1
.................................................................................................................AGATG-------------------------------------------------------------TACC---------ATCAGCAGCAAC-........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................CGC-----AGC---AACA---GAGCAAC------C-CG--CAAA.........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................GC-----AGC---AACA---GAGCAAC------C-CG--CAAATG----------------------A................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............G--G-GG-CAG-----CCCAGC------------CA-------------------CGCCCAGGTGAT------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
......................................................................CGCCCAGGTGAT------CAG---CGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................GCAGCAGCAACAG------------------------CCGTCGC-----AGC---AAC....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AACA---GAGCAAC------C-CG--CAAATG----------------------.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...............................CCCAGC------------CA-------------------CGCCCAGGTGAT------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................TGCATATCAGTTCCAGCAGCA............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................A-------------------CGCCCAGGTGAT------CAG---CGCCA--------TCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................G------------------------CCGTCGC-----AGC---AACA---GAGCAAC------C-.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................CGCCCAGGTGAT------CAG---CGCCA--------TC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................AG------------------------CCGTCGC-----AGC---AACA---GAGC............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................TCCAGCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGGG.........	22	1	1.00	1	1	0	0	0	0	0
....................................C------------CA-------------------CGCCCAGGTGAT------CAG---CGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
........................................................................CCCAGGTGAT------CAG---CGCCA--------TCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................GCAGCAGCAACAG------------------------CCGTCGC-----.............................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................GCAACAG------------------------CCGTCGC-----AGC---AAC....................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1
....................................................................................................................................................................................................GCAGCAAC-AC---CAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0
...........................................................................................................................................................................................................C-AC---CAGCAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................GCAAC-AC---CAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

TGGTGTGGCCGGGATGAAT-GG-CAA-----C---------CAC----------------CTGGCAG---GCATCAA----------------------------------------------------------------CTTCAACATGGACATGGCGGCGGCTGCCTACCAGC----------------AGCAACAGCAG-CAG---CAACAGCAGAAGCATCCC------------------------CAACAGC---AG--C---AGCA---GCAGCAGG------C--GC-------A-------------------------------------------------------CAACAACGGATTCAACGTGGCC----------------------G---------------------------------------------------------------------------------------------------------------------------ACTTCAGTA--------------------------------------------------TGGCCGGATTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAACTCGCCGGTCCAT---------------------GTACTGGCGGCTCCCCCC------TC----ATATCCCCAGAAGTCAGC---------GGCAG--------T------------------------------------------------------G---GTGCAGCAGC-AGCA--GCAAGCGGCAGCAGCGGC-A-------CAGCAGCAGCAGCACCAC------------------------CACCAGCAGCAT--C------AGCACCAGCAGTCCAAGCC--AC-------------------------------CG-----------------------------ACGCCA--------------------------------------------------------------------------------------------------------A-------------------------------------------------C-C----------------ACGCCGC-----------C----------TCTG--CTTAGCG------GAGGA--GGAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAATGCGACTGGAATG--C-GC-CAGCCCAC------GCAG-----------------------------------------------------------------CTGATGC-----AGCCCAATCT----------------------------------G---ATGCAGCAGC----------------AGCAGCAGCAA-CAG---CAGCAGCAGCAGCAACAA------------------------CAACAGC-----AGC---AACA---GCAGCAGC------A--GC-------AGA-TGATGGGCCTGGGCGG-----------------------------------ACCCAACCA--------------------------------------------------GCTGGGCGGCGGACAAATGTCCGTCGGCGGACAGCACGGCGGC---------------------------------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACTACGGCGGAC-TG--CT-GGTGA-CCCC------GACG-----------------------------------------------------------------GCCAAGC-----CGCCGCAGGAGATCTGCCACCATCAT-------------------------------C-------------------ACCAGCAC-CAGCAG------------CAGTCACAGCAGCAACAGCAACA---TGCACAGCAGC-----AGC---AACA---GCAACATG------C-------------------------------ACAGCA-----------------------------GCAGCAGCGAATGCACCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGAGTATTGCCGCCC-----------------GCCTGCCCAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGTATCGCCCCCACTG--C-CG-C------------------------------CGTACATGCCGAC---------------------------GG--------------------------------------------------------------------------CCCCGC----------------AGCAACAGCAA-CAG---CAGCAGCAGCAGCAACAA------------------------CAACAGC---AG--C---AGCA---GCAACAGT------T--GC-------TGAACGGACGGCCTAGTCCG-----------------------------------ACGGCATCGGGGTCGTCG----------------------------------------------------GGCGGCC-----------------------------------------------------------------------------------------------------------------------------------GCTC--CTCGGCGC------------ATTCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACCCCAGCAGCAACA---------------------GCAGC------------AGCAACCGCCCAC---GCCCCAG----------------------------------------------------------------CAG-------------------------------C-------------------AGCAGGTG-CAGCAG------------CAAGCACAGCAGGCGCAACAGCA---GGCGCAGCAGC-----AGC---AACA---GCAGCA---------------------------------------------------------------------------GCAGCAGAGTCAGCAGCAGGCTC----------------------GACTGCCGCAG------------------------------------------CATTATCCGCAGGCTCCTGGCCAGCATCCGTTGTATCCGGGGGTGGGAGCACCCGCCGTCCAAGCGGGACAACCTCC--------------------------------------------CAC----------TCCCCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGAGTGGTCGGTCAG--G-TG-CCT-----CCCTAC------------GC-------------------CCGACAGCAGTCGGC--GGGAGGCGGCAAGCCGGGCGTCTTGAACA------------------------------------------------------CGCAGC----------------AACAATTCCAG-CAG---CAACAGCAGCAGCAACAA------------------------CAGCAG--------CAACAGCT---GAGGCAC------C-AG--CAAATG----------------------ATGCA-----------------------------GATGCAGGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGCGGTGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAGTGAGCAGCGGTTG--A-AG-CGT-----CGCTGC---------------------------------------------------------------------------------TGCCGCAGAAAAT--GGCC----------------------------------GCAGC----------------GACAACAGCAG-CAG---CAACAGCAGCAGCAATAA---------------------CAATAGCAGC-----AAC---ATCG---GCAACA-----------GC-AAT--A--------------------GCAACATGAATGAAA--------------------CCTGCAGC-----CACGTTGCAC----------------------GG------------------------------CAACGCCG---------------------------------------------------------------------------------------------------------------ATGAT-----------------GATAACGATGATAATGACAAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

CACTACGGCGGCC-TG--CT-GGTGA-CCTC------GACG-----------------------------------------------------------------GCCAAGC-----AGCCGCAGGAGATCTGTCACCATCAT-------------------------------C-------------------ACCAGCAT-CAGCAG------------CAGCATCAGCAGCAGCATCAGCAGCAGCAGCAGCAGC---AG--C---AGCA---GCAACA----------------------------------------GCAACA-----------------------------GCAGCAGCGCATGCACCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGA-------------------------------------GT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................AGCGCATGCACCATGCAC----------------------AT---------------------------------------------------CC...........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACCAGCAT-CAGCAG------------CAGCATC................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CCAGCAT-CAGCAG------------CAGCATCA...............................................................................................................................................................................................................................................................................................................................................................................	21	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GCAACA-----------------------------GCAGCAGCGCATG..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TACGGCGGCC-TG--CT-GGTGA-CCTC------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................AGCAG------------CAGCATCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCAGCAGCATCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................C---AGCA---GCAACA----------------------------------------GCAACA-----------------------------GCAGCAGA.......................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GCAG------------CAGCATCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGCAGCAGC---AG--C---AGCA---GCAACA----------------------------------------G.................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGCAGCAGC---AG--C---AGCA---GCAACA----------------------------------------GC................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC---AG--C---AGC....................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CAGCAG------------CAGCATCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CACTACGGCGGCC-TG--CT-GGTGA-CCTC------GACG-----------------------------------------------------------------GCGAAGC-----AGCCGCAGGAGATCTGTCACCATCAT-------------------------------C-------------------ACCAGCAT-CAG---CAGCAGCAGCAGCAACA---------------------TGCACAGCAGC-----AGC---AACA---GCAACA---------------------------------------------------------------------------GCAGCAGCGCATGCACCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGAGTATTGCAGCACGT--TTGCCCGC---GATGAA----GG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................C-------------------ACCAGCAT-CAG---CAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................A---GCAACA---------------------------------------------------------------------------GCAGCAGCG......................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CACTACGGCGGCC-TG--CT-GGTGA-CCTC------GACG-----------------------------------------------------------------GCGAAGC-----AGCCGCAGGAGATCTGTCACCATCAT-------------------------------C-------------------ACCAGCAT-CAG---CAGCAGCAGCAGCAACA---------------------TGCACAGCAGC-----AGC---AACA---GCAACA---------------------------------------------------------------------------GCAGCAGCGCCTGCAGCATGCAC----------------------AT---------------------------------------------------CCGCAT-----------------------------------------------------------------------------------------CCGCCGAGTATTGCTGCACGT--TTGCCCGC---GATGAA----GG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................GCAGCAGCAACA---------------------TGCACAGCAGC-----AGC---A......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................ACAGCAGC-----AGC---AACA---GCAACA---------------------------------------------------------------------------G..............................................................................................................................................................................................................................................	22	12	0.08	1	0	0	1	0
.........................................................................................................................................................................................................AT-CAG---CAGCAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	1	0
........................................................................................................................................................................................................CAT-CAG---CAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1
..................................................................................................................................................................................................................................................................C-----AGC---AACA---GCAACA---------------------------------------------------------------------------GCAGCAG........................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0

droYak3

CGCATCC--------------------------CTCC------------CT-------------------GCCCG--------------------------------TCATGC-----AGCAGCAC---------CACCTGCAG-------------------------------C-------------------AGCAGCAA-CAGCAG------------CAACAACAGCAGCAGCAGCAGCA---GGAGCAGCAGC-----ATC---TGCA---GGAGCAG---------------C--A--------------------GCAGCATCT--------------------------GCAGCAACTGCACCACCATGCGC----------------------AC---------------------------------------------------CACCAC-----------------------------------------------------------------------------------------CTGCC----------TCAGC-CTCTCCACACCAC----------CA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................AGCAG---------------C--A--------------------GCAGCATCT--------------------------GCAGCA.........................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGCAG------------CAACAACAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCA---GGAGCAGC.....................................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGCAGCAA-CAGCAG------------CAACAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCA---.............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................GCAG------------CAACAACAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AA-CAGCAG------------CAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................G------------CAACAACAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CAGCAG------------CAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCAGCAGCAGCAGCA---GGAGC........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CAA-CAGCAG------------CAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................GCAG-------------------------------C-------------------AGCAGCAA-CAGCAG------------C......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................AGCAGCAGCAGCAGCA---GGAGCA.......................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CGCCACAGCCATGCGG--C-GG-CGA-CCCA------AACG---------------------------------CAGG------TCGCCGC---CGCCG--------------------------------------------T------------------T---GC-CAACAGCAGACAAC---------AACAACAGCAAC-AA---CAGCAGCAGCAGCAGCAG------------------------CAACAAC---AG--C---AGCA---GCAACAGA------C--GGCAAG------------------------CAGCA-----------------------------ACAGCAACGCA----G--------------------------------------------------------CGCCC--------------------------------------------------------------------------------------------GCTCCA----------------------------------------TCGCCG------CAGAAGGACTAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------------------------TCGCCG------CAGAAGGACT..	18	1	20.00	20	0	0	0	0	0	0	20
.GCCACAGCCATGCGG--C-GG-CGA-CCCA------AAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................AACAGA------C--GGCAAG------------------------CAGCA-----------------------------ACA............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................GA-CCCA------AACG---------------------------------CAGG------TCGCCGC---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................C---AG--C---AGCA---GCAACAGA------C--GG.............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCAACAGA------C--GGCAAG------------------------CAGC.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................AGCA-----------------------------ACAGCAACGCA----G--------------------------------------------------------CGCCC--------------------------------------------------------------------------------------------GCTCC.................................................................	26	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GCA----G--------------------------------------------------------CGCCC--------------------------------------------------------------------------------------------GCTCCA----------------------------------------TCGCC...................	20	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................C---AGCA---GCAACAGA------C--GGCA...........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................A-----------------------------ACAGCAACGCA----G--------------------------------------------------------CGCCC--------------------------------------------------------------------------------------------GT....................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................CAAC---------AACAACAGCAAC-AA---CAGCA..............................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	1	0	0
..................................................................................................................................................................................ACAAC---------AACAACAGCAAC-AA---CAGC...............................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................AACAGCAAC-AA---CAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	1	0	1	0
......................................................................................................................................................................................................................AGCAGCAGCAGCAG------------------------CAACAAC---AG--C---AGCA---................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................AACAGCAAC-AA---CAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................AGCAGCAGCAG------------------------CAACAAC---AG--C---AGC....................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................CAGCAAC-AA---CAGCAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................CAGCAAC-AA---CAGCAGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0

dgr_382

scaffold_15126:1132355-1132447 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads