ID:

dgr_38

 Coordinate:

scaffold_14906:9800268-9800357 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-51.4 -51.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCATTGATATGATCAGGCTGTCTATTTATATAGTACCCATTGTCTCATGTTACGATTGTAGTCGTCGTTGGCGTTCAAGCCGTTGTATTACTGCCGTAATATAACGACATTTAACGCCGACGGCGACTCCAATCGCAACAATTTAAAAGCAGCGTACCACGCCTAACTTTTTGGGGGAATTTCGATAATA
***********************************............((((.((((((.((((((((((((((((.((..(((((((((((....)))))))))))...)).)))))))))))))))).)))))).))))...............*********************************** 		Read size # Mismatch Hit Count Total Norm Total V109
male body
..................................................TACGATTGTAGTCGTCGTTGGC...................................................................................................................... 22 0 1 4.00 4 4
...................................................GCGATTGTAGTCGTCGTTGGC...................................................................................................................... 21 1 1 3.00 3 3
...................................................ACGATTGTAGTCGTCGTTGGC...................................................................................................................... 21 0 1 3.00 3 3
...................................................ACGATTGTAGTCGTCGTGGG....................................................................................................................... 20 1 1 1.00 1 1
..................................................TACGATTGTAGTCGTCGCTGGC...................................................................................................................... 22 1 1 1.00 1 1
..................................................TACGATTGTAGTCGTCGTTGG....................................................................................................................... 21 0 1 1.00 1 1

Anti-sense strand reads

AGTAACTATACTAGTCCGACAGATAAATATATCATGGGTAACAGAGTACAATGCTAACATCAGCAGCAACCGCAAGTTCGGCAACATAATGACGGCATTATATTGCTGTAAATTGCGGCTGCCGCTGAGGTTAGCGTTGTTAAATTTTCGTCGCATGGTGCGGATTGAAAAACCCCCTTAAAGCTATTAT
***********************************............((((.((((((.((((((((((((((((.((..(((((((((((....)))))))))))...)).)))))))))))))))).)))))).))))...............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droGri2 scaffold_14906:9800218-9800407 + dgr_38 TCATTGATATGATCAGGCTGTCTATTTATATAGTACCCATTGTCTCATGTTACGATTGTAGTCGTCGTTGGCGTTCAAGCCGTTGTATTACTGCCGTAATATAACGACATTTAACGCCGACGGCGACTCCAATCGCAACAATTTAAAAGCAGCGTACCACGCCTAACTTTTTGGGGGAATTTCGATAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
TCATTGATATGATCAGGCTGTCTATTTATATAGTACCCATTGTCTCATGTTACGATTGTAGTCGTCGTTGGCGTTCAAGCCGTTGTATTACTGCCGTAATATAACGACATTTAACGCCGACGGCGACTCCAATCGCAACAATTTAAAAGCAGCGTACCACGCCTAACTTTTTGGGGGAATTTCGATAATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................TACGATTGTAGTCGTCGTTGGC......................................................................................................................2214.00404
...................................................ACGATTGTAGTCGTCGTTGGC......................................................................................................................2113.00303
..................................................TACGATTGTAGTCGTCGTTGG.......................................................................................................................2111.00101

Generated: 05/15/2015 at 02:17 PM