ID:

dgr_377

 Coordinate:

scaffold_15126:180937-181087 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.3

Flybase annnotation

exon [dgri_GLEANR_13361:3]; CDS [Dgri\GH13445-cds]; intron [Dgri\GH13445-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGTGGGTCTGCAACTGATCGGCAAGGAGCTGTTCATGTTCAGATCGTGGGGTTATGATCAGTTTTATATATGTGAAGAAAACTCGATATTGCAAAAGCTTTGGTTACTCCTAGATAGTGTTTATACTCTTATATTCATTACATTTGTTTTAGTTCTATTAATTTGTTATAAAATACGACGAGAAACACGGTCACCACATTGTTACGTCAAACCACGAAATGTTAGAAAATAATATATCACAAAGAGTTATA
********************************************************************************************************************************************....((((((.(((.((((............)))).)))..)))))).............*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M041
female body
 V109
male body
......................................TCAGATCAAGGGGTAATGAT................................................................................................................................................................................................. 20 3 2 3.00 6 0 6
.....................................TTCAGATCGAGAGGTAATGAT................................................................................................................................................................................................. 21 3 2 3.00 6 1 5
.....................................TTCAGATCAAGGGGTAATGAT................................................................................................................................................................................................. 21 3 2 2.00 4 0 4
............ACTGATCGGCAAGGAGCTGTT.......................................................................................................................................................................................................................... 21 0 1 2.00 2 1 1
......................................TCAGATCATGAGGTAATGAT................................................................................................................................................................................................. 20 3 3 2.00 6 0 6
............................................................................................................................................................................ATACGACGAGAAACACGGTCACCACATT................................................... 28 0 1 1.00 1 1 0
.......................................................................................................................................................................................................TGTTACGTCAAACCACGAAA................................ 20 0 1 1.00 1 1 0
............................................................................................................................................CATTTGTTTTAGTTCTATTA........................................................................................... 20 0 1 1.00 1 1 0
..............................GTTCATGTTCAGATCGTGGGG........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0
.................................................................................CTCGATATTGCAAAAGCTTTGG.................................................................................................................................................... 22 0 1 1.00 1 1 0
............................................................................................................................................................................ATACGACGAGAAACACGGTCACCA....................................................... 24 0 1 1.00 1 1 0
..............................GTTCATGTTCAGATCGTGGGGT....................................................................................................................................................................................................... 22 0 1 1.00 1 0 1
...............GATCGGCAAGGAGCTGTT.......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0
......................................................................TGTGAAGAAAACTCGATATTGCAAAAGC......................................................................................................................................................... 28 0 1 1.00 1 0 1
........................................................................................................................................................................................ACACGGTCACCACATTGTTACGTCAAA........................................ 27 0 1 1.00 1 0 1
...................................................................................................................................................................................GAGAAACACGGTCACCACATT................................................... 21 0 1 1.00 1 1 0
.........................................GATCGTGGGGTTATGATC................................................................................................................................................................................................ 18 0 1 1.00 1 1 0
..........................................................................................GCAAAAGCTTTGGTTACTCCTAGATA....................................................................................................................................... 26 0 1 1.00 1 1 0
............................................................................................................................................................................ATACGACGAGAAACACGGTCA.......................................................... 21 0 1 1.00 1 1 0
................................................................................................................GATAGTGTTTATACTCTTATATTC................................................................................................................... 24 0 1 1.00 1 1 0
.......................................................................................................................................................................................AACACGGTCACCACATTGTTACG............................................. 23 0 1 1.00 1 1 0
............................................................................................................CCTAGATAGTGTTTATACT............................................................................................................................ 19 0 1 1.00 1 1 0
.......................................................................................................................................................................ATAAAATACGACCAGAAACACG.............................................................. 22 1 1 1.00 1 0 1
......................................................................TGTGAAGAAAACTCGATATTG................................................................................................................................................................ 21 0 1 1.00 1 1 0
.................................CATGTTCAGATCGTGGGGTTATGATCA............................................................................................................................................................................................... 27 0 1 1.00 1 0 1
...............................................................................................AGCTTTGGTTACTCCTAGATAGTGTTT................................................................................................................................. 27 0 1 1.00 1 0 1
............ACTGATCGGCAAGGAGCTGTTCATG...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1
....................................................................................................TGGTTACTCCTAGATAGTG.................................................................................................................................... 19 0 1 1.00 1 1 0
.....GCCTGCAACTGATCGGCAAGGAG............................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0
.........GCAACTGATCGGCAAGGAGCTGTT.......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1
..........................................................................................................................................................................AAATACGACGAGAAACACGGTCACC........................................................ 25 0 1 1.00 1 1 0
................................................................................................GCTTTGGTTACTCCTAGATAGTGTT.................................................................................................................................. 25 0 1 1.00 1 0 1
.....................................................................ATGTGAAGAAAACTCGATA................................................................................................................................................................... 19 0 1 1.00 1 1 0
.........................................................................................................ACTCCTAGATAGTGTTTATACT............................................................................................................................ 22 0 1 1.00 1 1 0
......................AAGGAGCTGTTCATGTTCAG................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0
..............................GTTCATGTTCAGATCGTGGGGTTA..................................................................................................................................................................................................... 24 0 1 1.00 1 0 1
.....................................TTCAGATCATGGGGTAATG................................................................................................................................................................................................... 19 2 1 1.00 1 0 1
.GTGGGTCTGCAACTGATCGG...................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0
............ACTGATCGGCCAGGAGCTGTT.......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1
....GGTCTGCAACTGATCGGCAAG.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1
..........................................................................................................................................................................AAATACGACGAGAAACACGGT............................................................ 21 0 1 1.00 1 1 0
.................................CATGTTCAGATCGTGGGGTTATG................................................................................................................................................................................................... 23 0 1 1.00 1 0 1
..................................................................................................................................................................................CGAGAAACACGGTCACCACATTGTTACG............................................. 28 0 1 1.00 1 1 0
.....................................TTCAGATCAAGGGGTAATG................................................................................................................................................................................................... 19 3 10 0.60 6 1 5
.....................................TTCAGATCGAGAGGTAATG................................................................................................................................................................................................... 19 3 13 0.46 6 0 6
......................................TCAGATCAAGGGGTAATG................................................................................................................................................................................................... 18 3 20 0.25 5 4 1
......................................TCAGATCGAGAGGTAATGAT................................................................................................................................................................................................. 20 3 5 0.20 1 0 1

Anti-sense strand reads

ACACCCAGACGTTGACTAGCCGTTCCTCGACAAGTACAAGTCTAGCACCCCAATACTAGTCAAAATATATACACTTCTTTTGAGCTATAACGTTTTCGAAACCAATGAGGATCTATCACAAATATGAGAATATAAGTAATGTAAACAAAATCAAGATAATTAAACAATATTTTATGCTGCTCTTTGTGCCAGTGGTGTAACAATGCAGTTTGGTGCTTTACAATCTTTTATTATATAGTGTTTCTCAATAT
***************************************************....((((((.(((.((((............)))).)))..)))))).............******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M041
female body
 V109
male body
...........................................................................................GTTTTCGAAACCAAAGGG.............................................................................................................................................. 18 2 14 8.71 122 122 0
...........................................................................TCTTTTGAGCTATAACGTTTT........................................................................................................................................................... 21 0 1 1.00 1 1 0
......................TTCCTCGACAAGTACAAGTCT................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0
....................................................................................................................................................................................TCTTTGTGCCAGTGGTGTAAC.................................................. 21 0 1 1.00 1 1 0
..................................................................................................................................................................................GCTCTTTGTGCCAGTGGTGTA.................................................... 21 0 1 1.00 1 1 0
...................................................................................................................................................................................................TGTAACAATGCAGTTTGGTGC................................... 21 0 1 1.00 1 0 1
...........................................................................................GTTTTCGAAACCAAAGGGG............................................................................................................................................. 19 2 3 0.67 2 2 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droGri2 scaffold_15126:180887-181137 - dgr_377 -----------TGTGGGTCTGCAACTGATCGGCAAGGAGCTGTTCATGTTCAGATCGTGGGGTTATGATCAGTTTTATATATGTGAAGAAAACTCGATAT-----------TGCAAAAGCTTTGGTTACTCCTAGAT-AGT--------------------------GTTTATA--CTCTT--ATA-----TT---CATTACATTTGT---------TTTAGTTCTATTAATTTGTT-----------ATAAAATACGACGAGAAACACGGTCACCACATTGTTACGTCAAACCACGAAATGTTAGAAAATAATATA----TCACAAAGAGTTATA
droVir3 scaffold_12723:3291551-3291715 + -----------T-TGAGCCTGCAGCTTGTCAACTCGGAGCTGTTTATGGTCACATCGTGGGGCTTTGATCAGTTTTATATATGTGAATATGAAACGATAA-----------GT------GTTTGGTTAGTTAC---C-AAT--------------------------TTATATAATCCGTT--TTA-----TT---CGATA-----------CTTGTGATACTC-----------ATATTAGTGTTCT------------------------------------------------------------------------------TATATACG--
droMoj3 scaffold_6500:6500696-6500896 - dmo_1477 -----------TCTGAGTCTACAGCTGATCAATTCGGAGCTCTTCATGGTCAGATCATTGGGCTTCTATGAGTACTACATATGCGAATATGAGACACGGCAACAGAAATTATGCAAGATCCTTAAAAACCCC--------------------------------GATTTTTATA--TTCCTTCGGTGGCAATTATTC-TTGCAATTATATTAGCCGTAAAATTA-----------ATATTAAAGAATT------------------------------------------------------------------------------CAAAAAGGAA
droWil2 scf2_1100000004516:92155-92230 - -----------TCTTAGCCTTGTGTTAATTGATTCCGAAATATATATGATTCGATCAGAGGGTTACGATGATAATTATATTTGTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group4:6134160-6134234 - -----------TCTCAGTCTGGTGCTGTCCAACTCGACATTGTATATGAGGAGATCTTTCGGGTACGACAACTACTATATCTGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_16:760775-760849 + -----------TCTCAGTCTGGTGCTGTCCAACTCGACATTGTATATGAGGAGATCTTTCGGGTACGACAACTACTATATCTGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:5061320-5061349 - AAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCCATAATATAATCTGATA
droEle1 scf7180000491046:3618414-3618527 - -----------TCTCAGTCTGGAACTGGCCAATTCCTCGCTGTACATGCGACCAGCTTTCGGCCACGACGACTACTATATCTGCGAATACAAACTTTCCA-----------TTGGGGTACTTTGGCTTTCCCTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414060:1255-1432 + GACGGAACCTATCTCAGCCTGCAATTGGTGAACTCCACGCTGTACATGCGACCATCTTATGGGGAAGATGACTACTATATCTGCGAGTACAAGTTCTCCC-----------TTTGGCAATTATGGCTTTCCCTAGAA-CCCACACATAG---------------GATTATTATA--TTCGTCTCGGG----TTT---------------------------TTCCTGTGGCTTTGTT-----------A---------------------------------------------------------------------------------------
droEug1 scf7180000409463:1675609-1675802 + -----------CCTAAGCCTGGTACTGGTCAACTCCTCGCTGTACATGAGACGATCTAGTGGTATAGATGACTACTATATCTGCGAGTACAACTTCACCC-----------CTTGGCAATATTGGGTCTCATTTGAAACACAGACA-AGGACTGTCATTACCTTAATTTGT-----------TGTTTTCTATTGCTC-GTACAATTAT---------TACTTTTCTTTAAATTTATT-----------A---------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
-----------TGTGGGTCTGCAACTGATCGGCAAGGAGCTGTTCATGTTCAGATCGTGGGGTTATGATCAGTTTTATATATGTGAAGAAAACTCGATAT-----------TGCAAAAGCTTTGGTTACTCCTAGAT-AGT--------------------------GTTTATA--CTCTT--ATA-----TT---CATTACATTTGT---------TTTAGTTCTATTAATTTGTT-----------ATAAAATACGACGAGAAACACGGTCACCACATTGTTACGTCAAACCACGAAATGTTAGAAAATAATATA----TCACAAAGAGTTATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................ACTGATCGGCAAGGAGCTGTT....................................................................................................................................................................................................................................................................................................2112.00211
.............................................................................................................................................................................................................................................................ATACGACGAGAAACACGGTCACCACATT.......................................................2811.00110
........................................................................................................................................................................................................................................................................................TGTTACGTCAAACCACGAAA....................................2011.00110
.........................................................................................................................................................................................................CATTTGT---------TTTAGTTCTATTA..........................................................................................................2011.00110
.........................................GTTCATGTTCAGATCGTGGGG..................................................................................................................................................................................................................................................................................2111.00110
............................................................................................CTCGATAT-----------TGCAAAAGCTTTGG...................................................................................................................................................................................................................2211.00110
.............................................................................................................................................................................................................................................................ATACGACGAGAAACACGGTCACCA...........................................................2411.00110
.........................................GTTCATGTTCAGATCGTGGGGT.................................................................................................................................................................................................................................................................................2211.00101
..........................GATCGGCAAGGAGCTGTT....................................................................................................................................................................................................................................................................................................1811.00110
.................................................................................TGTGAAGAAAACTCGATAT-----------TGCAAAAGC........................................................................................................................................................................................................................2811.00101
.........................................................................................................................................................................................................................................................................ACACGGTCACCACATTGTTACGTCAAA............................................2711.00101
....................................................................................................................................................................................................................................................................GAGAAACACGGTCACCACATT.......................................................2111.00110
....................................................GATCGTGGGGTTATGATC..........................................................................................................................................................................................................................................................................1811.00110
................................................................................................................GCAAAAGCTTTGGTTACTCCTAGAT-A.....................................................................................................................................................................................................2611.00110
.............................................................................................................................................................................................................................................................ATACGACGAGAAACACGGTCA..............................................................2111.00110
......................................................................................................................................GAT-AGT--------------------------GTTTATA--CTCTT--ATA-----TT---C...........................................................................................................................................2411.00110
........................................................................................................................................................................................................................................................................AACACGGTCACCACATTGTTACG.................................................2311.00110
..................................................................................................................................CCTAGAT-AGT--------------------------GTTTATA--CT..............................................................................................................................................................1911.00110
.................................................................................TGTGAAGAAAACTCGATAT-----------TG...............................................................................................................................................................................................................................2111.00110
............................................CATGTTCAGATCGTGGGGTTATGATCA.........................................................................................................................................................................................................................................................................2711.00101
.....................................................................................................................AGCTTTGGTTACTCCTAGAT-AGT--------------------------GTTT.....................................................................................................................................................................2711.00101
.......................ACTGATCGGCAAGGAGCTGTTCATG................................................................................................................................................................................................................................................................................................2511.00101
..........................................................................................................................TGGTTACTCCTAGAT-AGT--------------------------G........................................................................................................................................................................1911.00110
....................GCAACTGATCGGCAAGGAGCTGTT....................................................................................................................................................................................................................................................................................................2411.00101
...........................................................................................................................................................................................................................................................AAATACGACGAGAAACACGGTCACC............................................................2511.00110
......................................................................................................................GCTTTGGTTACTCCTAGAT-AGT--------------------------GTT......................................................................................................................................................................2511.00101
................................................................................ATGTGAAGAAAACTCGATA.............................................................................................................................................................................................................................................1911.00110
...............................................................................................................................ACTCCTAGAT-AGT--------------------------GTTTATA--CT..............................................................................................................................................................2211.00110
.................................AAGGAGCTGTTCATGTTCAG...........................................................................................................................................................................................................................................................................................2011.00110
.........................................GTTCATGTTCAGATCGTGGGGTTA...............................................................................................................................................................................................................................................................................2411.00101
............GTGGGTCTGCAACTGATCGG................................................................................................................................................................................................................................................................................................................2011.00110
...............GGTCTGCAACTGATCGGCAAG............................................................................................................................................................................................................................................................................................................2111.00101
...........................................................................................................................................................................................................................................................AAATACGACGAGAAACACGGT................................................................2111.00110
............................................CATGTTCAGATCGTGGGGTTATG.............................................................................................................................................................................................................................................................................2311.00101
...................................................................................................................................................................................................................................................................CGAGAAACACGGTCACCACATTGTTACG.................................................2811.00110
droVir3
-----------T-TGAGCCTGCAGCTTGTCAACTCGGAGCTGTTTATGGTCACATCGTGGGGCTTTGATCAGTTTTATATATGTGAATATGAAACGATAA-----------GT------GTTTGGTTAGTTAC---C-AAT--------------------------TTATATAATCCGTT--TTA-----TT---CGATA-----------CTTGTGATACTC-----------ATATTAGTGTTCT------------------------------------------------------------------------------TATATACG--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................ATATGTGAATATGAAACGATAA-----------GT------.........................................................................................................................................................................................................................2413.003002000000000000000000000000000000000000000000000000000000000010
........................................TGTTTATGGTCACATCGTGGG...................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
.............................CAACTCGGAGCTGTTTATGGTC.............................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000020
..............................................................................................................................................................................ATCCGTT--TTA-----TT---CGATA-----------CTTGTGA.....................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................TCAACTCGGAGCTGTTTATGG...............................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................TGCAGCTTGTCAACTCGGAGC........................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
....................GCAGCTTGTCAACTCGGAG.........................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................AATATGAAACGATAA-----------GT------GTTTGG...................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................ATATAATCCGTT--TTA-----TT---CGATA-----------CTT.........................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................GTCACATCGTGGGGCTTTGATCA.........................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................GAAACGATAA-----------GT------GTTTGG...................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CCGTT--TTA-----TT---CGATA-----------CTT.........................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GATACTC-----------ATATTAGTGTTC.........................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
...............................ACTCGGAGCTGTTTATGGTCA............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................GTGGGGCTTTGATCAGTTTTAT..................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................ATGAAACGATAA-----------GT------GTTTGG...................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................TGTTTATGGTCACATCGTGGGGCTTTGA............................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................A-----TT---CGATA-----------CTTGTGATACT.................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TTA-----TT---CGATA-----------CTTGTGATACTC-----------AT...................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................GTTTATGGTCACATCGTGGGG..................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................GATAA-----------GT------GTTTGGTTAGTTAC---C-AAT--------------------------TT.......................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................TTGTGATACTC-----------ATATTAGTG............................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................ACGATAA-----------GT------GTTTGGTTA................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CGATA-----------CTTGTGATACTC-----------ATATTAGTGTT..........................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
....................GCAGCTTGTCAACTCGGAGC........................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
........................................TGTTTATGGTCACATCGTGG....................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................GCCTGCAGCTTGTCAACTCGGAGCT.......................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
.........................TTGTCAACTCGGAGCTGTTTATGGT..............................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................TCGTGGGGCTTTGATCAGT.......................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................GAATATGAAACGATAA-----------GT------GTTTGGTTA................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............AGCCTGCAGCTTGTCAACTCGGAGCT.......................................................................................................................................................................................................................................................................................................2611.001000000000000000000000100000000000000000000000000000000000000000
........................................................................................ATGAAACGATAA-----------GT------GTTTGGTTA................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................CGATA-----------CTTGTGATACTC-----------ATATT................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GATACTC-----------ATATTAGTGTTCT------------------------------------------------------------------------------T.........2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
-----------TCTGAGTCTACAGCTGATCAATTCGGAGCTCTTCATGGTCAGATCATTGGGCTTCTATGAGTACTACATATGCGAATATGAGACACGGCAACAGAAATTATGCAAGATCCTTAAAAACCCC--------------------------------GATTTTTATA--TTCCTTCGGTGGCAATTATTC-TTGCAATTATATTAGCCGTAAAATTA-----------ATATTAAAGAATT------------------------------------------------------------------------------CAAAAAGGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................AATTCGGAGCTCTTCATGGTC.............................................................................................................................................................................................................................................................................................2112.002100001
................GTCTACAGCTGATCAATTCGGAGCT.......................................................................................................................................................................................................................................................................................................2512.002200000
......................................GCTCTTCATGGTCAGATCAT......................................................................................................................................................................................................................................................................................2011.001000001
....................................................................................................................GATCCTTAAAAACCCC--------------------------------GATTTTTAT...................................................................................................................................................................2511.001100000
...........................................................................................................ATTATGCAAGATCCTTAAAAACCCC--------------------------------............................................................................................................................................................................2511.001100000
...................TACAGCTGATCAATTCGGAG.........................................................................................................................................................................................................................................................................................................2011.001100000
........................................TCTTCATGGTCAGATCATTGGGCTT...............................................................................................................................................................................................................................................................................2511.001100000
................................................GTCAGATCATTGGGCTTCTATGA.........................................................................................................................................................................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................ATTAAAGAATT------------------------------------------------------------------------------CAAAAAGGA.2011.001100000
..................CTACAGCTGATCAATTCGGAGC........................................................................................................................................................................................................................................................................................................2211.001100000
..................CTACAGCTGATCAATTCGGA..........................................................................................................................................................................................................................................................................................................2011.001100000
.................TCTACAGCTGATCAATTCGGAGC........................................................................................................................................................................................................................................................................................................2311.001100000
..................CTACAGCTGATCAATTCGGAGCTCTT....................................................................................................................................................................................................................................................................................................2611.001000001
...............................................GGTCAGATCATTGGGCTTCTATGA.........................................................................................................................................................................................................................................................................2411.001000001
....................................................................................................................................................................................................C-TTGCAATTATATTAGCCGTAA.....................................................................................................................2211.001100000
................................................................................................................................................................................................................ATTAGCCGTAAAATTA-----------ATATT................................................................................................2111.001100000
............................................................................................................TTATGCAAGATCCTTAAAAACCCC--------------------------------G...........................................................................................................................................................................2511.001000001
..................CTACAGCTGATCAATTCGGAGCTCTTC...................................................................................................................................................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................TTATATTAGCCGTAAAATTA-----------.....................................................................................................2011.001100000
.......................................................................GTACTACATATGCGAATATGAGACACGG.............................................................................................................................................................................................................................................2821.002200000
.................................................................................................................................................................................................ATTC-TTGCAATTATATTAGCC.........................................................................................................................2120.501100000
...................................................................................................CAACAGAAATTATGCAAGATCCTT.....................................................................................................................................................................................................................2420.501100000
......................................................................................................................................................................................CGGTGGCAATTATTC-TTGCAATT..................................................................................................................................2320.501100000
............................................................................................GACACGGCAACAGAAATTATGCAAG...........................................................................................................................................................................................................................2520.501100000
.....................................................ATCATTGGGCTTCTATGA.........................................................................................................................................................................................................................................................................1820.501100000
..........................................................................................GAGACACGGCAACAGAAATTATGCAAG...........................................................................................................................................................................................................................2720.501100000
......................................................................................ATATGAGACACGGCAACAGA......................................................................................................................................................................................................................................2020.501000001
.................................................................................................GGCAACAGAAATTATGCAAGATCCTT.....................................................................................................................................................................................................................2620.501100000
.....................................................................................AATATGAGACACGGCAACAGAAATTATG...............................................................................................................................................................................................................................2820.501100000
..............................................................................ATATGCGAATATGAGACACGGCA...........................................................................................................................................................................................................................................2320.501100000
.......................................................................................................AGAAATTATGCAAGATCCTT.....................................................................................................................................................................................................................2020.501100000
.................................................................................................................................................................................TCCTTCGGTGGCAATTATTC-TTGCA.....................................................................................................................................2520.501100000
...........................................................................TACATATGCGAATATGAGACACGGCAACA........................................................................................................................................................................................................................................2920.501100000
.................................................................................TGCGAATATGAGACACGGC............................................................................................................................................................................................................................................1920.501000001
..............................................................................................................................................................................................ATTATTC-TTGCAATTATATT.............................................................................................................................2020.501100000
......................................................................................................................................................................................CGGTGGCAATTATTC-TTGCA.....................................................................................................................................2020.501100000
....................................................................................................................................................................GATTTTTATA--TTCCTTCGGTG.....................................................................................................................................................2120.501100000
.....................................................................................AATATGAGACACGGCAACA........................................................................................................................................................................................................................................1920.501100000
......................................................................................................CAGAAATTATGCAAGATCCTT.....................................................................................................................................................................................................................2120.501100000
.........................................................................ACTACATATGCGAATATGAGACACGGCAA..........................................................................................................................................................................................................................................2920.501100000
droWil2
-----------TCTTAGCCTTGTGTTAATTGATTCCGAAATATATATGATTCGATCAGAGGGTTACGATGATAATTATATTTGTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................GATTCGATCAGAGGGTTACGAT...........................................................................................................................................................................................................................................................................2219.00900900
...........................................ATATGATTCGATCAGAGGGT.................................................................................................................................................................................................................................................................................2017.00700700
.........................................ATATATGATTCGATCAGAGGGT.................................................................................................................................................................................................................................................................................2217.00700700
...................................................CGATCAGAGGGTTACGATG..........................................................................................................................................................................................................................................................................1916.00602400
.........................................ATATATGATTCGATCAGAGG...................................................................................................................................................................................................................................................................................2015.00500500
.........................................ATATATGATTCGATCAGAGGG..................................................................................................................................................................................................................................................................................2114.00400400
...................................................CGATCAGAGGGTTACGATGA.........................................................................................................................................................................................................................................................................2014.00402200
...............................................GATTCGATCAGAGGGTTACGATG..........................................................................................................................................................................................................................................................................2313.00300300
...........................................ATATGATTCGATCAGAGGGTT................................................................................................................................................................................................................................................................................2113.00300300
...........................................ATATGATTCGATCAGAGGGTTACGATG..........................................................................................................................................................................................................................................................................2713.00300300
.............................................ATGATTCGATCAGAGGGTTACGAT...........................................................................................................................................................................................................................................................................2412.00200200
...................................................CGATCAGAGGGTTACGAT...........................................................................................................................................................................................................................................................................1812.00202000
................................................ATTCGATCAGAGGGTTACGAT...........................................................................................................................................................................................................................................................................2112.00200200
.......................................................CAGAGGGTTACGATGATAATTAT..................................................................................................................................................................................................................................................................2312.00200200
.........................................ATATATGATTCGATCAGAGGGTT................................................................................................................................................................................................................................................................................2312.00200200
.......................................ATATATATGATTCGATCAGAGG...................................................................................................................................................................................................................................................................................2212.00201100
........................................TATATATGATTCGATCAGAGGGTT................................................................................................................................................................................................................................................................................2412.00200200
.................................................TTCGATCAGAGGGTTACGATGAT........................................................................................................................................................................................................................................................................2312.00200200
...............................................GATTCGATCAGAGGGTTACGATGATAATT....................................................................................................................................................................................................................................................................2911.00100100
...........................................ATATGATTCGATCAGAGGGTTACGATGA.........................................................................................................................................................................................................................................................................2811.00100100
.......................................ATATATATGATTCGATCAGAGGGT.................................................................................................................................................................................................................................................................................2411.00100100
.........................................ATATATGATTCGATCAGAGGGTTACGATG..........................................................................................................................................................................................................................................................................2911.00100100
....................................GAAATATATATGATTCGATCAGAGGG..................................................................................................................................................................................................................................................................................2611.00100100
.................................................TTCGATCAGAGGGTTACGATG..........................................................................................................................................................................................................................................................................2111.00100100
...........................................ATATGATTCGATCAGAGGGTTACGAT...........................................................................................................................................................................................................................................................................2611.00100100
..................................................TCGATCAGAGGGTTACGATG..........................................................................................................................................................................................................................................................................2011.00100100
.................................................TTCGATCAGAGGGTTACGATGATAATT....................................................................................................................................................................................................................................................................2711.00100100
.....................................AAATATATATGATTCGATCAGAGGGT.................................................................................................................................................................................................................................................................................2611.00100100
...............................................GATTCGATCAGAGGGTTAC..............................................................................................................................................................................................................................................................................1911.00100100
...........................................ATATGATTCGATCAGAGGGTTAC..............................................................................................................................................................................................................................................................................2311.00100100
.........................................ATATATGATTCGATCAGAGGGTTAC..............................................................................................................................................................................................................................................................................2511.00100100
..........................................TATATGATTCGATCAGAGG...................................................................................................................................................................................................................................................................................1911.00101000
................GCCTTGTGTTAATTGATTCCGAAAT.......................................................................................................................................................................................................................................................................................................2511.00100100
..............................................TGATTCGATCAGAGGGTTACGATGATAAT.....................................................................................................................................................................................................................................................................2911.00100100
............................................TATGATTCGATCAGAGGGTTACGATGA.........................................................................................................................................................................................................................................................................2711.00100100
.......................................................CAGAGGGTTACGATGATAATT....................................................................................................................................................................................................................................................................2111.00100100
........................................TATATATGATTCGATCAGAGGG..................................................................................................................................................................................................................................................................................2211.00100100
.....................................................ATCAGAGGGTTACGATGAT........................................................................................................................................................................................................................................................................1911.00100100
.........................................ATATATGATTCGATCAGAGGGTTACGAT...........................................................................................................................................................................................................................................................................2811.00100100
..........................................TATATGATTCGATCAGAGGGT.................................................................................................................................................................................................................................................................................2111.00100100
...........................................ATATGATTCGATCAGAGGGTTACGATGAT........................................................................................................................................................................................................................................................................2911.00100100
....................................................GATCAGAGGGTTACGATG..........................................................................................................................................................................................................................................................................1811.00101000
...................................................CGATCAGAGGGTTACGATGATAATT....................................................................................................................................................................................................................................................................2511.00100100
........................................TATATATGATTCGATCAGAGGGT.................................................................................................................................................................................................................................................................................2311.00100100
.............................................ATGATTCGATCAGAGGGTTACGATGAT........................................................................................................................................................................................................................................................................2711.00100100
...............................ATTCCGAAATATATATGATT.............................................................................................................................................................................................................................................................................................2011.00101000
...........................................ATATGATTCGATCAGAGGGTTA...............................................................................................................................................................................................................................................................................2211.00100100
....................................................GATCAGAGGGTTACGATGATAATT....................................................................................................................................................................................................................................................................2411.00100100
..............TAGCCTTGTGTTAATTGATTCCGAAATAT.....................................................................................................................................................................................................................................................................................................2911.00100100
...................................................CGATCAGAGGGTTACGATGAT........................................................................................................................................................................................................................................................................2111.00100100
....................................GAAATATATATGATTCGATCAGAGGGT.................................................................................................................................................................................................................................................................................2711.00100100
..................CTTGTGTTAATTGATTCCGA..........................................................................................................................................................................................................................................................................................................2011.00100100
dp5
-----------TCTCAGTCTGGTGCTGTCCAACTCGACATTGTATATGAGGAGATCTTTCGGGTACGACAACTACTATATCTGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............AGTCTGGTGCTGTCCAACTCGACATT.......................................................................................................................................................................................................................................................................................................2614.0040400000000
...........................................ATATGAGGAGATCTTTCGG..................................................................................................................................................................................................................................................................................1913.0030300000000
............CTCAGTCTGGTGCTGTCCAACT..............................................................................................................................................................................................................................................................................................................2213.0030300000000
...........................................ATATGAGGAGATCTTTCGGGTA...............................................................................................................................................................................................................................................................................2212.0021100000000
................GTCTGGTGCTGTCCAACTC.............................................................................................................................................................................................................................................................................................................1912.0020200000000
...............AGTCTGGTGCTGTCCAACTCGA...........................................................................................................................................................................................................................................................................................................2212.0020200000000
...............AGTCTGGTGCTGTCCAACT..............................................................................................................................................................................................................................................................................................................1912.0020200000000
...........................................ATATGAGGAGATCTTTCGGGT................................................................................................................................................................................................................................................................................2112.0020200000000
.........................................GTATATGAGGAGATCTTTCGGGT................................................................................................................................................................................................................................................................................2312.0020000002000
..................................CGACATTGTATATGAGGAGATCTTTCGG..................................................................................................................................................................................................................................................................................2812.0020200000000
....................GGTGCTGTCCAACTCGACATT.......................................................................................................................................................................................................................................................................................................2112.0020200000000
..............CAGTCTGGTGCTGTCCAACTCGA...........................................................................................................................................................................................................................................................................................................2312.0020200000000
.............................................ATGAGGAGATCTTTCGGGT................................................................................................................................................................................................................................................................................1912.0020200000000
..................................................GAGATCTTTCGGGTACGACAACTACT....................................................................................................................................................................................................................................................................2611.0010100000000
................GTCTGGTGCTGTCCAACTCGACATT.......................................................................................................................................................................................................................................................................................................2511.0010100000000
................GTCTGGTGCTGTCCAACTCGACATTGT.....................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................GTCCAACTCGACATTGTATATGAGGA............................................................................................................................................................................................................................................................................................2611.0010100000000
......................................ATTGTATATGAGGAGATCTTTC....................................................................................................................................................................................................................................................................................2211.0010000001000
.......................................................CTTTCGGGTACGACAACTACTATATCT..............................................................................................................................................................................................................................................................2711.0010100000000
..................................................GAGATCTTTCGGGTACGA............................................................................................................................................................................................................................................................................1811.0010100000000
.........................................GTATATGAGGAGATCTTTC....................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................GATCTTTCGGGTACGACAAC........................................................................................................................................................................................................................................................................2011.0010100000000
........................................TGTATATGAGGAGATCTTTCGGGT................................................................................................................................................................................................................................................................................2411.0010100000000
............................................TATGAGGAGATCTTTCGGGT................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................GTATATGAGGAGATCTTTCGGGTACGA............................................................................................................................................................................................................................................................................2711.0010100000000
.............................................ATGAGGAGATCTTTCGGG.................................................................................................................................................................................................................................................................................1811.0010100000000
.......................GCTGTCCAACTCGACATTGTATATGAGG.............................................................................................................................................................................................................................................................................................2811.0010100000000
............CTCAGTCTGGTGCTGTCCAACTCG............................................................................................................................................................................................................................................................................................................2411.0010100000000
..................CTGGTGCTGTCCAACTCGA...........................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................CTTTCGGGTACGACAACTACT....................................................................................................................................................................................................................................................................2111.0010100000000
......................TGCTGTCCAACTCGACATTGT.....................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................ATGAGGAGATCTTTCGGGTACGAC...........................................................................................................................................................................................................................................................................2411.0010000001000
.........................................GTATATGAGGAGATCTTTCGG..................................................................................................................................................................................................................................................................................2111.0010000001000
......................................ATTGTATATGAGGAGATCTTTCGG..................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................AGATCTTTCGGGTACGAC...........................................................................................................................................................................................................................................................................1811.0010100000000
......................................ATTGTATATGAGGAGATCT.......................................................................................................................................................................................................................................................................................1911.0010100000000
................GTCTGGTGCTGTCCAACTCGA...........................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................GTCCAACTCGACATTGTAT...................................................................................................................................................................................................................................................................................................1911.0010100000000
...............AGTCTGGTGCTGTCCAACTCGAC..........................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................ACGACAACTACTATATCTGC............................................................................................................................................................................................................................................................2011.0010100000000
..................................CGACATTGTATATGAGGAGAT.........................................................................................................................................................................................................................................................................................2111.0010100000000
..................CTGGTGCTGTCCAACTCGAC..........................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................ATGAGGAGATCTTTCGGGTA...............................................................................................................................................................................................................................................................................2011.0011000000000
...........................................................CGGGTACGACAACTACTATA.................................................................................................................................................................................................................................................................2011.0010000010000
............................CCAACTCGACATTGTATATGAGGA............................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................GACAACTACTATATCTGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2011.0010100000000
...................TGGTGCTGTCCAACTCGACATT.......................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................CGACAACTACTATATCTGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.0010100000000
................GTCTGGTGCTGTCCAACTCGAC..........................................................................................................................................................................................................................................................................................................2211.0010100000000
...........TCTCAGTCTGGTGCTGTCCAACT..............................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................GGAGATCTTTCGGGTACGAC...........................................................................................................................................................................................................................................................................2011.0010100000000
.............TCAGTCTGGTGCTGTCCAACTCGACA.........................................................................................................................................................................................................................................................................................................2611.0010100000000
droPer2
-----------TCTCAGTCTGGTGCTGTCCAACTCGACATTGTATATGAGGAGATCTTTCGGGTACGACAACTACTATATCTGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AAAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCCATAATATAATCTGATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droEle1
-----------TCTCAGTCTGGAACTGGCCAATTCCTCGCTGTACATGCGACCAGCTTTCGGCCACGACGACTACTATATCTGCGAATACAAACTTTCCA-----------TTGGGGTACTTTGGCTTTCCCTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GACGGAACCTATCTCAGCCTGCAATTGGTGAACTCCACGCTGTACATGCGACCATCTTATGGGGAAGATGACTACTATATCTGCGAGTACAAGTTCTCCC-----------TTTGGCAATTATGGCTTTCCCTAGAA-CCCACACATAG---------------GATTATTATA--TTCGTCTCGGG----TTT---------------------------TTCCTGTGGCTTTGTT-----------A---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
-----------CCTAAGCCTGGTACTGGTCAACTCCTCGCTGTACATGAGACGATCTAGTGGTATAGATGACTACTATATCTGCGAGTACAACTTCACCC-----------CTTGGCAATATTGGGTCTCATTTGAAACACAGACA-AGGACTGTCATTACCTTAATTTGT-----------TGTTTTCTATTGCTC-GTACAATTAT---------TACTTTTCTTTAAATTTATT-----------A---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 10:21 PM