dgr_37

Antisense to intron [Dgri\GH10697-in]; utr5 [utr5_plus_811]; utr5 [utr5_plus_810]

ACAAACTAAGAGCAGGTTACTTTCATAACACACTCAAGAGCTCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATAAAAGACATCAATTCACTAGCTTTCAATTTGTATGCTCAAATGCAACGGACAATGCCCAACAACATTATTCAGAATTA *********************************..((((...((((((..(((.(((.((..(((.((((((.........)))))).))).)).))).)))..))))))...)))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
..................................................ATAAGGTAGAGATTTTGTTGTCT......................................................................................	23	0	1	1234.00	1234	1200	34
..................................................ATAAGGTAGAGATTTTGTTGT........................................................................................	21	0	1	282.00	282	275	7
..................................................ATAAGGTAGAGATTTTGTTGTC.......................................................................................	22	0	1	100.00	100	97	3
..................................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................	23	2	1	21.00	21	21	0
..................................................ATAAGGTAGAGATTTTGCTGTCT......................................................................................	23	1	1	13.00	13	13	0
..................................................ATAAGGTAGAGATTTTGATGTCT......................................................................................	23	1	1	11.00	11	11	0
..................................................ATAAGGTAGAGATATTGTTGTCT......................................................................................	23	1	1	10.00	10	10	0
..................................................ATAAGGTAGAGATTTTGTTGTCC......................................................................................	23	1	1	8.00	8	8	0
...................................................TAAGGTAGAGATTTTGTTGTCT......................................................................................	22	0	1	7.00	7	3	4
..................................................ATAAGGTAGAGATTTTGTTGTCG......................................................................................	23	1	1	5.00	5	5	0
..................................................ATAAGGTACAGATTTTGTTGTCT......................................................................................	23	1	1	5.00	5	5	0
..................................................GTAAGGTAGAGATTTTGTTGTCT......................................................................................	23	1	1	5.00	5	5	0
..................................................ATAAGGTAGAGATTTTGTTG.........................................................................................	20	0	1	5.00	5	5	0
..................................................ATAAGGTAGAGCTTTTGTTGTCT......................................................................................	23	1	1	4.00	4	4	0
..................................................ATAAGGTAGAGATTTTGCTGT........................................................................................	21	1	1	4.00	4	4	0
..................................................ATAAGGTACAGATTTTGTTGT........................................................................................	21	1	1	3.00	3	3	0
..................................................ATAAGTTAGAGATTTTGTTGTCT......................................................................................	23	1	1	3.00	3	2	1
..................................................ATAAGGTATAGATTTTGTTGTCT......................................................................................	23	1	1	3.00	3	3	0
..................................................ATAAGGTAGCGATTTTGTTGT........................................................................................	21	1	1	3.00	3	3	0
..................................................ATAAGGTAGAGATTTTGGTGTCT......................................................................................	23	1	1	3.00	3	3	0
..................................................ATTAGGTAGAGATTTTGTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................ATAAGGTAGAGATTTTTTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................AAAAGGTAGAGATTTTGTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................ATCAGGTAGAGATTTTGTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................	22	2	1	2.00	2	2	0
..................................................ATAAGGCAGAGATTTTGTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................ATAAGGTAGAGAAATTGTTGTCC......................................................................................	23	3	1	2.00	2	2	0
..................................................ATAAGGTAGAGATTTTGTTGTCA......................................................................................	23	1	1	2.00	2	2	0
..................................................ATAAGCTAGAGATTTTGTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................ATAAGGTATAGATTTTGTTGT........................................................................................	21	1	1	2.00	2	2	0
..................................................ATAAGTTAGAGATTTTGTTGT........................................................................................	21	1	1	2.00	2	2	0
..................................................ATAAGGCAGAGATTTTGTTGT........................................................................................	21	1	1	2.00	2	2	0
..................................................ATAAGGTAGAGATTTTGATGT........................................................................................	21	1	1	2.00	2	2	0
..................................................ATAAGCTAGAGATTTTGTTGT........................................................................................	21	1	1	2.00	2	2	0
..................................................ATAAGGTAGAGATTTTGGTGT........................................................................................	21	1	1	2.00	2	2	0
..................................................ATAAGGTAGAGATTTTGATGTC.......................................................................................	22	1	1	2.00	2	2	0
..................................................ATAGGGTAGAGATTTTGTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................ATAAGGTAAAGATTTTGTTGTCT......................................................................................	23	1	1	2.00	2	2	0
..................................................ATAAGGTAGAGATTTTGTTGTA.......................................................................................	22	1	1	2.00	2	2	0
..................................................ATAAGGAAGAGATTTTGTTG.........................................................................................	20	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGGTGTC.......................................................................................	22	1	1	1.00	1	1	0
..................................................ATAAGGTGGAGATTTTGTTGTC.......................................................................................	22	1	1	1.00	1	1	0
..................................................ATAAGATAGAGATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTGTCTT.....................................................................................	24	0	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGCTGTAT......................................................................................	23	2	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTCGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTGGAGATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGACTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTCTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGCTAGAGATTTTGATGTCT......................................................................................	23	2	1	1.00	1	1	0
..................................................ATAAGGTATAGATTTTGTTGTC.......................................................................................	22	1	1	1.00	1	1	0
..................................................ATAAGGTAGATATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTCT.........................................................................................	20	2	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTCGTTGT........................................................................................	21	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTCGT........................................................................................	21	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTATCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATCAGGTAGAGATTTTGTTGTC.......................................................................................	22	1	1	1.00	1	1	0
..................................................ATAAGGTAGACATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTGTAT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTCTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATACGGTAGAGATTTTGTTGTC.......................................................................................	22	1	1	1.00	1	1	0
..................................................ATAAGGTAAAGATTTTGTTGTC.......................................................................................	22	1	1	1.00	1	1	0
....................................................AAGGTAGAGATTTTGTTGTCT......................................................................................	21	0	1	1.00	1	0	1
...................................................TAAGGTAGAGATTTTGTTGTCTT.....................................................................................	23	0	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTTTTGT........................................................................................	21	1	1	1.00	1	1	0
..................................................ATAAGGTAGGGATTTTGTTGT........................................................................................	21	1	1	1.00	1	1	0
..................................................ATTAGGTAGAGATTTTCTTGTCT......................................................................................	23	2	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTGACC......................................................................................	23	2	1	1.00	1	1	0
..................................................ATAAGGGAGAGATTTTGGTGTCT......................................................................................	23	2	1	1.00	1	1	0
...................................................TAAGGTAGAGATATTGTTGTCTTC....................................................................................	24	1	1	1.00	1	1	0
..................................................ATAAGGAAGAGATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATACGGTAGAGATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTCGAGATTTTGTTGT........................................................................................	21	1	1	1.00	1	1	0
..................................................ATAAGGTGTAGATTTTGTTGTCT......................................................................................	23	2	1	1.00	1	1	0
..................................................TTAAGGTAGAGATTTTGTTGTC.......................................................................................	22	1	1	1.00	1	0	1
..................................................ATAAGGTAGAGATTTCGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................GTAAGGTAGAGATTTTGTTGTCC......................................................................................	23	2	1	1.00	1	1	0
..................................................ATAACGTAGAGATTTTGTTGTC.......................................................................................	22	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTAGTCT......................................................................................	23	1	1	1.00	1	1	0
...................................................TAAGGTAGAGATATTGTTGTCT......................................................................................	22	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATATTGTTGTCTTT....................................................................................	25	2	1	1.00	1	1	0
..................................................ATAAGGTAGAGATATTGCTGTCT......................................................................................	23	2	1	1.00	1	1	0
..................................................ATAAAGTAGAGATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTCGAGATTTTCTTGTCT......................................................................................	23	2	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTGTTCT.....................................................................................	24	2	1	1.00	1	1	0
..................................................ATAAGGGAGAGATTTTGTTGTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTGCCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTGTCTG.....................................................................................	24	1	1	1.00	1	0	1
..................................................ATAAGGTAGAGACTTTGTTGT........................................................................................	21	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGATTTTGTTTTCT......................................................................................	23	1	1	1.00	1	1	0
..................................................ATAAGGTAGAGAAATTGTTG.........................................................................................	20	2	4	0.25	1	1	0
..................................................ATAAGGTAGAAAAATTGTTGTC.......................................................................................	22	3	8	0.13	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15252:3147206-3147364 +	dgr_37	candidate-rescued	ACAA---AC--------------------------TAAGAGCA-GGTTACT-------TTC--ATA----------ACACACTC---AAGAGCT-CTCAGATTATAAGGTAGAGATTTTGTTGTCTTC-----------TATTAT--A-----AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AATGCAACGG--------------------------------------ACAATGCCCAACAACATTA--TTCAGAATTA----
droVir3	scaffold_12963:3615395-3615566 +	dvi-mir-962	Known_mirbase	A---TTAAACA-A---------------------CTC-A-----ATTTACACAC----ACA--CAC----------A-CACATAAGAAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACTT---------TACA-TATG----GTGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AATGCAACGGAA------------------------------------CCATTTTGGAGGAACATCATATTTAGAATAA----
droMoj3	scaffold_6500:14018341-14018538 +	dmo_149	candidate-rescued	ACGG-------------------------------TC-G-----TTTTG---------------------------TCGTACTC-G-TAGAGCG-CTCAAGTTATAAGGTAGAGATATTGTTGTCTTT-TTGCATATAGCACTCT--GTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AATGCAGCAACACACAGTGGACAACGGACGATGGACGATAAACTAGGAACAATGGCAAACAACATTA--TTTCGAATTG----
droWil2	scf2_1100000004521:8625862-8626029 -	dwi_150	confident	ACAA---AA---GCTATAATTGCTGAAATGGATACAC-G-----TTTT----------------------------C-TATTTAAT-AAGGACC-CTCAAGTTATAAGGTAGAGAAAATGTTGTCTTT-ATATTTGTAACA-ATT--G----TTAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACATGCAACAACAT--------------------------------------ATA----ATACAATCA-----------A----
droAna3	scaffold_12916:11085069-11085200 +	dan_24	confident	A---TCAAATACG---------------------CTC-G-----ACTTTGG-------GCC--CAA----------C-CACCTGGCCGAGGGCA-CTCAAGCTATAAGGTAGAGAAAATAATGTCTTC-----------GTCTCC--A----AATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CAAGCAAC---------------------------------------------------------------------------
droBip1	scf7180000396572:742818-742949 +			A---TCAAATACA---------------------CAC-G-----ACTTTGG-------GCC--CAA----------C-CACCTGGTCGGGGGCA-CCCAAGCTATAAGGTAGAGAAAGTAATGTCTTC-----------GTCTCC--A----AATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CAAGCAAC---------------------------------------------------------------------------
droKik1	scf7180000302389:430835-430974 -			ACAA--------A---------------------CTC-G-----TCTCGGA-------ACT-CCAACATCCTGGAAC-TCCCTGCC-CAAGGCA-CTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG------------ACTCT--AAG--CTCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAG-------------------------------------------------------------------------
droFic1	scf7180000453932:197447-197570 -			ACAA--------A---------------------CTC-G-----GCTCGGA-------AGC--CAT----------C---CCCCCA-CTGGGCA-GTCAAGCTATAAGGTAGAGAAACTCTTGTCTTC-----------CCCTAC--A----TCCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAAC---------------------------------------------------------------------------
droEle1	scf7180000490753:30460-30607 +			ATAA--------A---------------------CTC-G-----------A-------ACC--CAA----------T-TACCTC----GGGGCA-CCCAAGCTATAAGGTAGAGAAAATGTTGTCTTC-----------C-CACT--A----CTCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC--CACGCAACAGTG------------------------------------ATAATG----ATAGCATCG--TTTGGCATTACAAT
droRho1	scf7180000778253:33713-33870 -			A---TCAAATAAA---------------------CTC-G-----GCTTTGA-------GTT--CAA----------C-TACCTCCA-CGGGGCA-CTCAAGCTATAAGGTAGAGAAACTGTTGTCTTC-----------CATACT--A-----CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC--CACGCAACAGTG------------------------------------ATAATG----ATAACATCG--TTGGACATTA----
droBia1	scf7180000302422:3830814-3830945 +			A---TCAAACAAA---------------------CTC-G-----ACCCAAA-------GGC--CAA----------C-CAACCCGT--CGGGCA-CTCAAGCTATAAGGTAGAGAAATTGTTGTCCCA-----------CACTCT--A----TTCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CATGCATCAG-------------------------------------------------------------------------
droTak1	scf7180000415871:385551-385683 +			A---TCAAATAAA---------------------CTC-G-----ACTTAAA-------ACC--CAA----------C-CAACTCGA-CGGGGCA-CCCAAGCTATAAGGTAGAGAAACTGTTGTCTGG-----------CACTCA--A----TTCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAG-------------------------------------------------------------------------
droEug1	scf7180000409063:317572-317709 +			A---TCAAACAAA---------------------CTC-G-----ACTTCAAAACCCAAACC--CAA----------C-TTCCTCGC-CGGGGCA-CACAAGCTCTAAGGTAGAGAAAATGTTGTCTTT-----------GACGCG--T----TCTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CACGCAAC---------------------------------------------------------------------------
dm3	chr2L:5641264-5641396 +	dme-mir-962	Known_mirbase	AAGA---AC--------------------------TTGGACTCGACTT-GA-------ATT--CAA----------C-TACTTCGA-TGGGGCA-CTCAGGCTATAAGGTAGAGAAATTGATGCTGTC-----------TACACT--A----TTCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CATGCAACAG-------------------------------------------------------------------------
droSim2	2l:5446041-5446150 +	dsi-mir-962	Known_mirbase	A--------------------------------------------------------------CAA----------C-TACCTCGA-TGGGGCG-CTCAGGCTATAAGGTAGAGAAATTGATGTTGTC-----------TACACT--A----TTCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CCTGCAACAG-------------------------------------------------------------------------
droSec2	scaffold_5:3718997-3719138 +	dse_179	candidate-rescued	GCAATCAAAGGAA---------------------CTC-GACTCGACTT-GA-------ATCTACAA----------C-TACCTCGA-TGGGGCA-TTCAGGCTATAAGGTAGAGAAATTGATGTTGTC-----------TACACT--A----TTCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CATGCAACAG-------------------------------------------------------------------------
droYak3	2L:13551900-13552055 -	dya_92	candidate-rescued	A---TCAAAAGAA---------------------CTC-GACTCGACTC-GA-------ATC--CAA----------C-CAACTTCA-TGGGGCA-CACAAGCTATAAGGTAGAGAAATTGTTGTCTTC-----------CACACT--A----TTCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTG------------------------------------ATAATG----ATAACATCG--TT------------
droEre2	scaffold_4929:5729725-5729876 +	der_24	candidate-rescued	AAAG---AA-------------------------CTC-GACTCGGCTCG-A-------ATC--CCA----------G-TACCTCCT-TGGGGCA-CTCAAGCTATAAGGTAGAAAAATTGTTGTCTTC-----------CACACT--A----TTCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTG------------------------------------ACAACG----ATAACATCG--TT------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

ACAA---AC--------------------------TAAGAGCA-GGTTACT-------TTC--ATA----------ACACACTC---AAGAGCT-CTCAGATTATAAGGTAGAGATTTTGTTGTCTTC-----------TATTAT--A-----AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AATGCAACGG--------------------------------------ACAATGCCCAACAACATTA--TTCAGAATTA----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................ATAAGGTAGAGATTTTGTTGTCT......................................................................................................................................................	23	1	1234.00	1234	34	1200
.......................................................................................................ATAAGGTAGAGATTTTGTTGT........................................................................................................................................................	21	1	282.00	282	7	275
.......................................................................................................ATAAGGTAGAGATTTTGTTGTC.......................................................................................................................................................	22	1	100.00	100	3	97
.......................................................................................................ATAAGGTAGAGATTTTGTTGTCC......................................................................................................................................................	23	1	8.00	8	0	8
........................................................................................................TAAGGTAGAGATTTTGTTGTCT......................................................................................................................................................	22	1	7.00	7	4	3
.......................................................................................................ATAAGGTAGAGATTTTGTTGTCG......................................................................................................................................................	23	1	5.00	5	0	5
.......................................................................................................ATAAGGTAGAGATTTTGTTG.........................................................................................................................................................	20	1	5.00	5	0	5
.......................................................................................................ATAAGGTAGAGATTTTGTTGTCA......................................................................................................................................................	23	1	2.00	2	0	2
.......................................................................................................ATAAGGTAGAGATTTTGTTGTA.......................................................................................................................................................	22	1	2.00	2	0	2
.......................................................................................................ATAAGGTAGAGATTTTGTTGTCTT.....................................................................................................................................................	24	1	1.00	1	0	1
.......................................................................................................ATAAGGTAGAGATTTTGTCT.........................................................................................................................................................	20	1	1.00	1	0	1
.........................................................................................................AAGGTAGAGATTTTGTTGTCT......................................................................................................................................................	21	1	1.00	1	1	0
........................................................................................................TAAGGTAGAGATTTTGTTGTCTT.....................................................................................................................................................	23	1	1.00	1	0	1
.......................................................................................................ATAAGGTAGAGATTTTGTTGTCTG.....................................................................................................................................................	24	1	1.00	1	1	0

droVir3

A---TTAAACA-A---------------------CTC-A-----ATTTACACAC----ACA--CAC----------A-CACATAAGAAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACTT---------TACA-TATG----GTGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AATGCAACGGAA------------------------------------CCATTTTGGAGGAACATCATATTTAGAATAA----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	23	1	452353.00	452353	437	22	417	13	498	30557	959	101726	1810	138323	1568	42	9	120	32	3	9	43	37	9	18926	32	6	323	119	160	421	241	30913	28426	8566	28584	3	17648	9	3	52	4	373	26267	0	0	0	0	0	0	0	0	0	1	0	2	0	0	1	7	7	133	0	28	26	13436	2	63	161	3	3	18	136	123	191	43	153	83	11	0	2	2	8
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCC......................................................................................................................................................	23	1	24475.00	24475	136	0	48	3	26	2911	45	125	29	4382	7	0	0	1	4	0	0	0	4	0	2172	2	0	14	1	3	10	4	1904	2207	937	2946	2	2343	0	0	0	0	16	2797	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	1249	0	5	8	0	0	0	23	13	20	7	29	31	1	0	0	0	2
.......................................................................................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................	22	1	20497.00	20497	17	0	44	1	27	1671	60	1772	60	5059	53	0	0	4	1	0	0	2	4	0	1119	0	2	29	7	13	17	18	2488	2120	689	2252	0	816	1	0	3	0	9	1395	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	2	523	0	7	19	0	0	5	45	15	32	7	45	24	7	1	2	1	4
.......................................................................................................ATAAGGTAGAGAAATTGTTGT........................................................................................................................................................	21	1	8724.00	8724	2	0	38	3	24	512	44	964	35	1516	41	0	0	3	2	0	1	4	0	0	360	1	0	32	12	5	46	26	1478	1049	360	1114	1	257	0	0	14	1	11	497	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	142	0	2	28	1	0	7	15	9	19	10	16	4	7	0	0	3	3
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTC.....................................................................................................................................................	24	1	8340.00	8340	32	0	3	0	6	1186	15	4	7	1544	8	0	0	0	2	0	0	0	2	0	747	1	0	9	2	2	10	3	679	693	328	954	0	601	0	0	0	0	6	1172	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	240	0	0	0	0	0	1	12	14	21	8	20	6	0	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	22	1	3286.00	3286	5	0	43	1	4	312	15	540	8	1002	5	0	0	2	0	0	0	0	0	0	164	1	0	1	0	2	0	7	240	179	78	254	0	102	0	0	1	0	1	214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	96	0	0	2	0	0	0	1	0	3	0	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGAAATTGTTG.........................................................................................................................................................	20	1	1084.00	1084	0	0	14	0	5	119	9	48	8	130	5	0	0	0	0	0	0	1	0	0	68	0	0	9	2	1	6	3	129	113	48	148	0	58	0	1	0	0	2	132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	14	0	0	3	1	0	1	1	0	0	1	0	0	0	1	0	1	1
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTT.....................................................................................................................................................	24	1	691.00	691	0	0	1	2	3	48	0	103	1	116	0	0	0	0	0	0	0	0	0	0	24	0	0	1	2	0	3	3	105	77	14	85	1	46	0	0	2	0	1	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	1	1	0	2	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCCC.....................................................................................................................................................	24	1	497.00	497	6	0	0	0	0	76	1	0	0	29	0	0	0	0	0	0	0	0	0	0	53	0	0	0	0	0	0	0	31	33	25	70	0	65	0	0	0	0	0	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................................................	23	1	431.00	431	0	0	0	0	1	43	1	70	1	95	0	0	0	0	0	0	0	0	0	0	37	0	0	0	0	0	0	0	34	26	14	34	0	23	0	0	0	0	0	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................................................	24	1	197.00	197	0	0	0	0	5	13	1	33	1	21	11	10	0	21	0	0	0	0	0	0	5	0	0	1	0	0	2	7	13	7	5	13	0	3	0	0	3	0	5	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................ACATCAAT-TCACTAGCTTTCA.................................................................................................	21	1	194.00	194	0	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	19	0	0	1	0	0	0	0	49	24	13	32	0	12	0	0	0	0	0	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTC.........................................................................................................................................................	20	1	192.00	192	1	0	0	0	1	22	0	0	0	48	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	15	15	3	28	0	11	0	0	0	0	1	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTCT....................................................................................................................................................	25	1	167.00	167	0	0	0	0	0	39	0	1	1	38	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	15	20	2	13	0	5	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA................................................................................................	22	1	167.00	167	0	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	1	44	24	20	45	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTTC......................................................................................................................................................	23	1	166.00	166	2	0	0	0	0	17	0	0	1	20	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	18	17	8	26	0	9	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCA......................................................................................................................................................	23	1	164.00	164	0	0	6	1	1	11	4	6	0	35	0	0	0	0	0	0	0	1	0	0	6	0	0	2	0	2	2	3	11	14	8	10	0	4	0	0	3	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	1	0	3	5	0	0	0	0	0	0	0	1
..........................................................................................................AGGTAGAGAAATTGTTGTCT......................................................................................................................................................	20	1	157.00	157	0	0	0	0	1	28	1	24	0	30	1	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	11	9	3	2	0	9	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCCT.....................................................................................................................................................	24	1	138.00	138	1	0	1	0	0	7	0	0	0	19	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	13	14	3	18	0	12	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCG......................................................................................................................................................	23	1	110.00	110	25	1	0	0	0	4	0	19	0	30	1	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	1	6	2	1	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................GTAGAGAAATTGTTGTCT......................................................................................................................................................	18	1	98.00	98	0	0	1	0	1	18	0	16	1	9	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	9	11	0	5	0	5	0	0	0	0	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTT..........................................................................................................................................................	19	1	91.00	91	0	0	0	0	0	16	0	4	0	9	0	0	0	0	0	0	0	1	0	0	8	0	0	0	0	0	1	0	12	13	5	8	0	5	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	21	1	80.00	80	0	0	7	2	0	0	0	9	1	13	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	10	10	2	12	0	2	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTT.......................................................................................................................................................	22	1	67.00	67	0	0	0	0	0	3	0	6	0	18	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	1	6	3	1	14	0	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTCA....................................................................................................................................................	25	1	62.00	62	0	0	0	0	0	1	0	0	0	16	0	0	0	0	0	0	0	0	0	0	8	0	0	1	0	0	0	0	7	5	8	2	0	3	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTCC.........................................................................................................................................................	20	1	60.00	60	1	0	0	0	0	3	0	0	1	11	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	7	6	5	9	0	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTTT....................................................................................................................................................	25	1	60.00	60	0	0	0	0	0	0	0	7	0	17	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	7	6	2	6	0	3	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GGTAGAGAAATTGTTGTCT......................................................................................................................................................	19	1	47.00	47	0	0	0	0	0	10	0	5	1	6	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	8	5	0	1	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGT...........................................................................................................................................................	18	1	45.00	45	0	0	0	0	0	2	0	2	1	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	7	5	3	6	0	7	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTA.......................................................................................................................................................	22	1	41.00	41	0	0	1	0	0	4	1	0	0	9	0	0	0	1	0	0	0	0	0	0	8	0	0	0	0	0	2	0	1	4	1	4	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................	21	1	38.00	38	0	0	8	0	0	1	0	4	0	7	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	4	1	2	5	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTCC......................................................................................................................................................	22	1	34.00	34	0	0	3	0	0	5	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	3	2	0	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTCTC.....................................................................................................................................................	23	1	34.00	34	0	0	1	0	0	7	0	1	1	8	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	1	2	2	0	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACATCAAT-TCACTAGCTTTC..................................................................................................	20	1	29.00	29	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	5	1	5	0	3	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTTTC...................................................................................................................................................	26	1	29.00	29	0	0	0	0	0	2	0	0	0	10	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	2	1	4	0	2	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTTCT.....................................................................................................................................................	24	1	25.00	25	0	0	0	0	0	1	0	7	0	5	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTC..........................................................................................................................................................	19	1	24.00	24	0	0	0	0	0	3	0	0	0	11	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	4	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTCTC...................................................................................................................................................	26	1	24.00	24	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	6	3	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTAC......................................................................................................................................................	23	1	23.00	23	0	0	0	0	0	3	0	2	0	3	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	1	1	0	0	4	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTAA....................................................................................................................................................	25	1	23.00	23	0	0	0	0	0	0	1	0	3	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	3	2	0	1	1	0	0	0	0	0	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGC........................................................................................................................................................	21	1	20.00	20	0	0	0	0	0	1	0	8	0	4	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTAA......................................................................................................................................................	23	1	18.00	18	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	3	0	2	0	0	1	1
........................................................................................................TAAGGTAGAGAAATTGTTGTCTAT....................................................................................................................................................	24	1	16.00	16	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTAT....................................................................................................................................................	25	1	15.00	15	0	0	0	0	0	0	0	3	3	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTAAA...................................................................................................................................................	26	1	15.00	15	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTTCC.....................................................................................................................................................	24	1	15.00	15	0	0	0	0	0	2	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	1	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGGTAGAGAAATTGTTGTCC......................................................................................................................................................	20	1	13.00	13	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	24	1	12.00	12	0	0	1	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGGTAGAGAAATTGTTGTC.......................................................................................................................................................	19	1	11.00	11	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTTA....................................................................................................................................................	25	1	11.00	11	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTCC........................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTG.....................................................................................................................................................	24	1	10.00	10	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GGTAGAGAAATTGTTGTCTC.....................................................................................................................................................	20	1	9.00	9	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GTAGAGAAATTGTTGTCC......................................................................................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCCCT....................................................................................................................................................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	1	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACGG-------------------------------TC-G-----TTTTG---------------------------TCGTACTC-G-TAGAGCG-CTCAAGTTATAAGGTAGAGATATTGTTGTCTTT-TTGCATATAGCACTCT--GTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AATGCAGCAACACACAGTGGACAACGGACGATGGACGATAAACTAGGAACAATGGCAAACAACATTA--TTTCGAATTG----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................ATAAGGTAGAGATATTGTTGTCT......................................................................................................................................................	23	1	14885.00	14885	52	0	89	144	1	14599
.......................................................................................................ATAAGGTAGAGATATTGTTGT........................................................................................................................................................	21	1	2016.00	2016	17	0	46	87	0	1866
.......................................................................................................ATAAGGTAGAGATATTGTTGTC.......................................................................................................................................................	22	1	1358.00	1358	11	0	9	17	0	1321
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTC.....................................................................................................................................................	24	1	867.00	867	8	0	3	9	0	847
........................................................................................................TAAGGTAGAGATATTGTTGTCT......................................................................................................................................................	22	1	513.00	513	5	0	4	6	0	498
........................................................................................................TAAGGTAGAGATATTGTTGTCTTC-...................................................................................................................................................	24	1	301.00	301	3	0	0	0	0	298
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTC-...................................................................................................................................................	25	1	130.00	130	1	0	0	0	0	129
.......................................................................................................ATAAGGTAGAGATATTGTTGTCC......................................................................................................................................................	23	1	119.00	119	1	0	0	0	1	117
.......................................................................................................ATAAGGTAGAGATATTGTTG.........................................................................................................................................................	20	1	112.00	112	4	0	3	12	0	93
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTCC-...................................................................................................................................................	25	1	88.00	88	6	0	0	1	0	81
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTT.....................................................................................................................................................	24	1	88.00	88	1	0	2	2	0	83
........................................................................................................TAAGGTAGAGATATTGTTGTCTT.....................................................................................................................................................	23	1	67.00	67	4	0	0	2	0	61
........................................................................................................TAAGGTAGAGATATTGTTGTC.......................................................................................................................................................	21	1	54.00	54	2	0	0	1	0	51
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTT-C..................................................................................................................................................	26	1	34.00	34	0	0	0	0	0	34
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTT-...................................................................................................................................................	25	1	31.00	31	0	0	0	2	0	29
........................................................................................................TAAGGTAGAGATATTGTTGTCTTT-...................................................................................................................................................	24	1	27.00	27	0	0	0	0	0	27
........................................................................................................TAAGGTAGAGATATTGTTGTCTTT-C..................................................................................................................................................	25	1	26.00	26	0	0	0	0	0	26
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTCA-...................................................................................................................................................	25	1	16.00	16	0	0	0	1	0	15
........................................................................................................TAAGGTAGAGATATTGTTGTCTTC-C..................................................................................................................................................	25	1	16.00	16	0	0	0	0	0	16
.......................................................................................................ATAAGGTAGAGATATTGTTGTCA......................................................................................................................................................	23	1	16.00	16	0	0	0	1	0	15
........................................................................................................TAAGGTAGAGATATTGTTGTCTC.....................................................................................................................................................	23	1	15.00	15	1	0	1	0	0	13
........................................................................................................TAAGGTAGAGATATTGTTGT........................................................................................................................................................	20	1	15.00	15	1	0	0	2	0	12
.......................................................................................................ATAAGGTAGAGATATTGTTGC........................................................................................................................................................	21	1	10.00	10	1	0	0	0	0	9
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTA.....................................................................................................................................................	24	1	8.00	8	1	0	0	0	0	7
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTCC-C..................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	6
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTC-C..................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	6
.......................................................................................................ATAAGGTAGAGATATTGTTGTT.......................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	6
........................................................................................................TAAGGTAGAGATATTGTTGTCTTC-A..................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	4
........................................................................................................TAAGGTAGAGATATTGTTGTCC......................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	4
.......................................................................................................ATAAGGTAGAGATATTGTTGTCCC.....................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	4
.................................................................................CTC-G-TAGAGCG-CTCAAGTT.............................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTT-T..................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
................................................................................ACTC-G-TAGAGCG-CTCAAGTT.............................................................................................................................................................................	20	1	3.00	3	1	0	0	0	0	2
.........................................................................................................AAGGTAGAGATATTGTTGTCT......................................................................................................................................................	21	1	3.00	3	2	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTT..........................................................................................................................................................	19	1	3.00	3	0	0	1	0	0	2
.......................................................................................................ATAAGGTAGAGATATTGTC..........................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3
........................................................................................................TAAGGTAGAGATATTGTTGTCTTA-...................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.......................................................................................................ATAAGGTAGAGATATTGTTC.........................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTC-A..................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
.......................................................................................................ATAAGGTAGAGATATTGTTGTA.......................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.......................................................................................................ATAAGGTAGAGATATTGTTGA........................................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0
.............................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................TAAGGTAGAGATATTGTTGTCTTT-TTC................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTCCCC-...................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGT...........................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTA-...................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTCG-...................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................TT-TTGCATATAGCACTCT--GTTATGT..........................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTG.......................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGATATTGTTT.........................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTT-AA.................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTTC......................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTT-TCT................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
........................................................................................................TAAGGTAGAGATATTGTTGTCTCA-...................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..........................................................................................................AGGTAGAGATATTGTTGTCT......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTT-TC.................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTTT-TT.................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0
........................................................................................................TAAGGTAGAGATATTGTTG.........................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................TAAGGTAGAGATATTGTTGTT.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTCTCC-A..................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTTGTAA......................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................AAGGTAGAGATATTGTTGTC.......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................TAAGGTAGAGATATTGTTGTCTTT-T..................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................TAAGGTAGAGATATTGTTGTCTTC-CC.................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................ATAAGGTAGAGATATTGTCT.........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

ACAA---AA---GCTATAATTGCTGAAATGGATACAC-G-----TTTT----------------------------C-TATTTAAT-AAGGACC-CTCAAGTTATAAGGTAGAGAAAATGTTGTCTTT-ATATTTGTAACA-ATT--G----TTAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACATGCAACAACAT--------------------------------------ATA----ATACAATCA-----------A----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................	23	1	1876.00	1876	26	11	1762	14	63
.......................................................................................................ATAAGGTAGAGAAAATGTTGTC.......................................................................................................................................................	22	1	1235.00	1235	12	4	1179	13	27
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCC......................................................................................................................................................	23	1	53.00	53	7	1	43	0	2
........................................................................................................TAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................	22	1	32.00	32	0	1	28	1	2
.......................................................................................................ATAAGGTAGAGAAAATGTTGT........................................................................................................................................................	21	6	26.67	160	0	1	156	0	3
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCA......................................................................................................................................................	23	1	23.00	23	0	1	22	0	0
........................................................................................................................................................TTAAGACATCACTTTCACTAGC......................................................................................................	22	1	11.00	11	1	2	4	1	3
.......................................................................................................ATAAGGTAGAGAAAATGTTG.........................................................................................................................................................	20	6	6.50	39	0	0	39	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCTT.....................................................................................................................................................	24	1	5.00	5	0	0	5	0	0
........................................................................................................................................................TTAAGACATCACTTTCACTAG.......................................................................................................	21	1	5.00	5	1	1	3	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCTA.....................................................................................................................................................	24	1	4.00	4	0	0	3	0	1
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCTC.....................................................................................................................................................	24	1	3.00	3	0	0	2	0	1
......................................................................................................TATAAGGTAGAGAAAATGTTGTCT......................................................................................................................................................	24	1	3.00	3	0	0	2	0	1
..............................................................................................................................................................CATCACTTTCACTAGCTTTCA.................................................................................................	21	1	3.00	3	0	0	2	0	1
......................................................................................................TATAAGGTAGAGAAAATGTTGTC.......................................................................................................................................................	23	1	3.00	3	0	0	3	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCG......................................................................................................................................................	23	1	3.00	3	1	0	2	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTTGTCCC.....................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
..............................................................................................................................................................CATCACTTTCACTAGCTTTCAA................................................................................................	22	1	2.00	2	0	0	2	0	0
........................................................................................................................................................TTAAGACATCACTTTCACTA........................................................................................................	20	1	1.00	1	0	0	0	0	1
........................................................................................................................................................TTAAGACATCACTTTCACTAGCA.....................................................................................................	23	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................CATCACTTTCACTAGCTTTC..................................................................................................	20	1	1.00	1	0	0	1	0	0
..................................................................................TAAT-AAGGACC-CTCAAGTT.............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................TAAGACATCACTTTCACTAGCT.....................................................................................................	22	1	1.00	1	0	0	0	0	1
........................................................................................................................................................TTAAGACATCACTTTCACTAGCG.....................................................................................................	23	1	1.00	1	0	0	1	0	0
........................................................................................................................................................TTAAGACATCACTTTCACTAGCT.....................................................................................................	23	1	1.00	1	1	0	0	0	0
.........................................................................................................AAGGTAGAGAAAATGTTGTC.......................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTTGTT.......................................................................................................................................................	22	6	0.83	5	0	0	5	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTT..........................................................................................................................................................	19	6	0.67	4	0	0	4	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTTGTA.......................................................................................................................................................	22	6	0.33	2	0	0	2	0	0
.......................................................................................................ATAAGGTAGAGAAAATGT...........................................................................................................................................................	18	6	0.17	1	0	0	0	0	1
......................................................................................................TATAAGGTAGAGAAAATGTTGT........................................................................................................................................................	22	6	0.17	1	0	0	1	0	0
........................................................................................................TAAGGTAGAGAAAATGTTGT........................................................................................................................................................	20	6	0.17	1	0	1	0	0	0
.......................................................................................................ATAAGGTAGAGAAAATGTCT.........................................................................................................................................................	20	10	0.10	1	0	0	1	0	0

droAna3

A---TCAAATACG---------------------CTC-G-----ACTTTGG-------GCC--CAA----------C-CACCTGGCCGAGGGCA-CTCAAGCTATAAGGTAGAGAAAATAATGTCTTC-----------GTCTCC--A----AATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CAAGCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................ATAAGGTAGAGAAAATAATGTCT......................................................................................................................................................	23	1	1274.00	1274	8	0	0	26	1118	122
.......................................................................................................ATAAGGTAGAGAAAATAATGTC.......................................................................................................................................................	22	1	1238.00	1238	26	1	0	57	1110	44
.......................................................................................................ATAAGGTAGAGAAAATAATGT........................................................................................................................................................	21	1	170.00	170	4	0	0	8	152	6
.......................................................................................................ATAAGGTAGAGAAAATAATG.........................................................................................................................................................	20	1	79.00	79	4	0	0	3	68	4
..............................................................................................................................................................CATCAATTTCCCTAGCTTGCAT................................................................................................	22	1	11.00	11	0	0	0	0	8	3
.......................................................................................................ATAAGGTAGAGAAAATAAT..........................................................................................................................................................	19	1	6.00	6	0	0	0	0	4	2
........................................................................................................TAAGGTAGAGAAAATAATGTC.......................................................................................................................................................	21	1	4.00	4	4	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAAATAATGTCC......................................................................................................................................................	23	1	3.00	3	0	1	0	0	2	0
.......................................................................................................ATAAGGTAGAGAAAATAATGTCA......................................................................................................................................................	23	1	3.00	3	0	0	0	1	1	1
.......................................................................................................ATAAGGTAGAGAAAATAATGTT.......................................................................................................................................................	22	1	3.00	3	0	0	0	0	3	0
......................................................................................................TATAAGGTAGAGAAAATAATGT........................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0
........................................................................................................TAAGGTAGAGAAAATAATGTCT......................................................................................................................................................	22	1	2.00	2	1	0	0	0	1	0
.......................................................................................................ATAAGGTAGAGAAAATAATGTCTTT-----------T........................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0
.......................................................................................................ATAAGGTAGAGAAAATAATGA........................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
.......................................................................................................ATAAGGTAGAGAAAATAATGTCTT.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................................................................................................ATAAGGTAGAGAAAATAATGTAA......................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................CATCAATTTCCCTAGCTTGCATT...............................................................................................	23	1	1.00	1	0	0	0	1	0	0
.......................................................................................................ATAAGGTAGAGAAAATAATGTCTTT-----------.........................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................CATCAATTTCCCTAGCTTGCA.................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................ATCAATTTCCCTAGCTTGCAT................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................ACATCAATTTCCCTAGCTTGCAT................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.......................................................................................................ATAAGGTAGAGAAAATAATGG........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................ACATCAATTTCCCTAGCTTGCA.................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAAATA............................................................................................................................................................	17	1	1.00	1	0	0	0	1	0	0
.......................................................................................................ATAAGGTAGAGAAAATAATGC........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................AAGGTAGAGAAAATAATGTC.......................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................TAAGGTAGAGAAAATAATGT........................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................CATCAATTTCCCTAGCTTGC..................................................................................................	20	1	1.00	1	0	0	0	1	0	0

droBip1

A---TCAAATACA---------------------CAC-G-----ACTTTGG-------GCC--CAA----------C-CACCTGGTCGGGGGCA-CCCAAGCTATAAGGTAGAGAAAGTAATGTCTTC-----------GTCTCC--A----AATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CAAGCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACAA--------A---------------------CTC-G-----TCTCGGA-------ACT-CCAACATCCTGGAAC-TCCCTGCC-CAAGGCA-CTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG------------ACTCT--AAG--CTCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAA--------A---------------------CTC-G-----GCTCGGA-------AGC--CAT----------C---CCCCCA-CTGGGCA-GTCAAGCTATAAGGTAGAGAAACTCTTGTCTTC-----------CCCTAC--A----TCCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATAA--------A---------------------CTC-G-----------A-------ACC--CAA----------T-TACCTC----GGGGCA-CCCAAGCTATAAGGTAGAGAAAATGTTGTCTTC-----------C-CACT--A----CTCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC--CACGCAACAGTG------------------------------------ATAATG----ATAGCATCG--TTTGGCATTACAAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A---TCAAATAAA---------------------CTC-G-----GCTTTGA-------GTT--CAA----------C-TACCTCCA-CGGGGCA-CTCAAGCTATAAGGTAGAGAAACTGTTGTCTTC-----------CATACT--A-----CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC--CACGCAACAGTG------------------------------------ATAATG----ATAACATCG--TTGGACATTA----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A---TCAAACAAA---------------------CTC-G-----ACCCAAA-------GGC--CAA----------C-CAACCCGT--CGGGCA-CTCAAGCTATAAGGTAGAGAAATTGTTGTCCCA-----------CACTCT--A----TTCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CATGCATCAG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A---TCAAATAAA---------------------CTC-G-----ACTTAAA-------ACC--CAA----------C-CAACTCGA-CGGGGCA-CCCAAGCTATAAGGTAGAGAAACTGTTGTCTGG-----------CACTCA--A----TTCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

A---TCAAACAAA---------------------CTC-G-----ACTTCAAAACCCAAACC--CAA----------C-TTCCTCGC-CGGGGCA-CACAAGCTCTAAGGTAGAGAAAATGTTGTCTTT-----------GACGCG--T----TCTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CACGCAAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAGA---AC--------------------------TTGGACTCGACTT-GA-------ATT--CAA----------C-TACTTCGA-TGGGGCA-CTCAGGCTATAAGGTAGAGAAATTGATGCTGTC-----------TACACT--A----TTCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CATGCAACAG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................ATAAGGTAGAGAAATTGATGCTGTC-----------.........................................................................................................................................	25	1	41535.00	41535	0	0	0	0	0	5	0	0	0	1	1	20	1	0	0	0	0	0	0	0	22	2	3	0	0	0	0	0	0	0	0	0	0	0	0	43	170	33	30	49	60	35	158	36	20	44	279	41	93	35	115	85	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	1	1	3	0	3	3	0	0	0	0	0	9	0	0	138	0	2	23	0	0	4	2	9	1	0	0	8	0	5	2	2	45	0	0	2	7	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	3	2	1	0	0	0	0	5	1	7	0	0	4	4	75	206	390	203	312	1057	74	73	47	50	0	0	0	0	0	14	0	3	2	0	15	0	2	0	2	1	0	1	13	41	0	0	2	7	1	64	0	4	0	14	0	0	3908	76	5947	97	348	0	2	711	2	3005	68	3	0	0	0	1	53	100	9	5	9	10	0	4	9	9	4	357	960	15	875	261	162	466	812	254	66	408	319	0	1	3	0	0	0	0	0	9	6	0	4	0	0	1	6	0	90	1	0	70	0	0	0	0	1	2	0	0	3	0	0	1	0	0	1	1	0	0	1	0	0	155	1158	16	73	20	177	2	38	0	4	0	0	1	3	3	7	5	35	48	1132	75	6	40	28	105	37	133	563	7017	880	1045	0	0	15	1505	243	7	1	21	2	1	0	3	6	1	3	0	449	19	953	116	192	249	348	647	1	7	15	5	0
.......................................................................................................ATAAGGTAGAGAAATTGATGCTGTC-----------T........................................................................................................................................	26	1	13984.00	13984	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	15	55	10	13	13	20	9	30	20	0	12	104	17	22	8	16	33	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	21	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	18	56	113	32	68	105	21	11	16	13	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	2	0	0	1	1	0	0	0	0	0	0	0	0	688	17	1942	23	26	0	0	157	1	1024	25	0	1	0	0	0	11	37	0	3	0	0	0	0	0	12	0	82	166	4	122	80	63	98	307	114	33	205	84	2	0	0	0	0	0	0	0	1	1	0	1	0	0	1	2	0	47	0	0	15	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	143	858	10	79	6	91	12	38	0	0	0	0	0	0	0	1	0	7	42	312	26	0	12	18	61	37	112	158	3632	288	343	0	2	15	641	157	0	0	5	0	1	0	0	2	1	0	0	71	2	154	38	26	50	52	151	0	3	4	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGCTG......................................................................................................................................................	23	1	12620.00	12620	0	0	0	0	0	2	0	0	0	0	0	4	0	0	0	0	0	0	0	0	3	0	1	24	0	0	0	0	0	0	0	0	0	0	0	12	49	10	7	14	32	8	71	14	12	8	94	10	25	15	27	22	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	12	0	0	3	0	0	0	0	4	2	0	0	0	0	0	0	0	6	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	27	70	83	29	62	196	27	18	16	16	0	0	0	0	0	4	0	0	4	0	4	1	0	0	2	0	0	0	4	6	0	0	0	0	4	6	0	0	0	13	5	1	1393	21	2477	28	32	0	0	339	0	1328	49	0	0	0	0	0	9	23	0	4	5	1	0	0	17	7	5	150	321	7	254	4	8	19	112	23	11	14	15	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	27	0	0	8	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	59	425	11	34	7	90	4	22	0	2	0	0	0	2	9	3	4	3	14	239	22	1	12	2	19	11	58	161	1793	205	282	0	0	4	383	92	0	0	4	0	0	0	0	0	0	1	0	126	2	375	64	36	82	66	61	1	3	1	3	0
.......................................................................................................ATAAGGTAGAGAAATTGATGCTGT.....................................................................................................................................................	24	1	7426.00	7426	0	0	0	0	0	0	0	0	0	0	0	10	1	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	52	7	6	11	12	4	65	13	5	10	73	9	24	5	21	16	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	5	0	0	0	0	0	0	3	0	0	90	1	3	13	0	0	2	7	2	1	0	0	2	0	1	2	1	36	0	0	2	9	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	10	24	63	22	60	53	11	1	3	4	0	0	0	0	0	0	0	5	0	2	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	7	0	3	0	4	0	0	382	21	622	27	5	0	0	54	1	391	8	0	0	0	0	0	12	27	4	1	1	0	0	0	1	0	0	109	227	1	183	25	29	78	284	49	13	56	53	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	12	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	77	475	13	47	24	79	5	25	0	0	0	0	0	1	1	0	1	2	17	88	21	1	19	14	29	17	56	42	1977	69	49	0	0	3	439	115	1	0	0	0	0	0	0	1	0	0	0	14	2	49	22	21	28	33	32	0	6	1	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGCT.......................................................................................................................................................	22	1	2870.00	2870	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	29	0	0	0	0	0	0	0	0	0	0	0	3	14	1	4	2	5	4	29	4	3	0	21	0	6	10	12	7	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	1	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	12	15	9	16	22	3	5	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	4	3	4	59	9	368	7	18	0	0	52	0	288	13	0	0	0	0	0	2	9	0	2	1	1	0	0	4	2	0	31	71	3	138	5	10	37	144	20	8	23	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	92	2	8	5	21	1	7	0	0	0	0	0	3	0	1	0	1	3	64	10	0	3	3	8	6	22	14	582	17	16	0	0	1	130	31	2	0	2	0	0	0	0	0	0	0	1	16	0	61	19	6	16	15	23	0	1	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATG.........................................................................................................................................................	20	1	1202.00	1202	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	74	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	2	2	0	12	1	0	0	12	1	4	1	7	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	2	4	32	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	60	1	173	2	3	0	0	50	0	146	13	0	0	0	0	0	1	2	4	0	0	0	0	0	0	0	0	14	24	0	30	1	2	1	28	1	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	17	1	0	0	8	2	1	0	0	0	0	0	0	2	1	0	0	1	42	2	0	2	1	2	1	7	16	159	36	76	0	0	0	31	6	0	0	2	0	0	0	0	0	0	0	0	9	1	23	2	2	0	1	4	0	0	0	1	0
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.......................................................................................................ATAAGGTAGAGAAATTGATGCTGGT-----------.........................................................................................................................................	25	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGCTA......................................................................................................................................................	23	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATT.........................................................................................................................................................	20	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TAGAGAAATTGATGCTGTC-----------T........................................................................................................................................	20	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AAGGTAGAGAAATTGATGCTGTC-----------.........................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A--------------------------------------------------------------CAA----------C-TACCTCGA-TGGGGCG-CTCAGGCTATAAGGTAGAGAAATTGATGTTGTC-----------TACACT--A----TTCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CCTGCAACAG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGT.....................................................................................................................................................	24	1	5415.00	5415	0	40	0	3	2	0	28	37	0	0	134	0	26	5145	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTT.......................................................................................................................................................	22	1	4495.00	4495	1	22	0	3	97	1	36	72	1	0	168	3	15	4076	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTG......................................................................................................................................................	23	1	3519.00	3519	0	2	0	1	64	1	10	13	0	0	57	0	15	3356	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------.........................................................................................................................................	25	1	2980.00	2980	0	243	19	5	65	1	22	39	0	0	122	6	14	2444	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------T........................................................................................................................................	26	1	663.00	663	0	52	2	1	1	0	16	37	1	0	95	1	5	452	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGT........................................................................................................................................................	21	1	241.00	241	0	2	0	0	47	3	3	3	0	0	17	0	1	165	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATG.........................................................................................................................................................	20	1	190.00	190	0	3	0	0	114	1	0	0	0	0	10	0	0	62	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTT......................................................................................................................................................	23	1	168.00	168	0	0	0	0	0	0	1	1	0	0	2	0	0	164	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGA...........................................................................................................................................................	18	1	99.00	99	0	0	0	0	95	0	0	0	0	0	2	0	0	2	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTT-----------.........................................................................................................................................	25	1	91.00	91	0	1	0	0	0	0	0	0	0	0	0	0	0	90	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTA......................................................................................................................................................	23	1	88.00	88	0	0	0	0	0	0	0	0	0	0	0	0	0	88	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGAT..........................................................................................................................................................	19	1	82.00	82	0	0	0	0	74	2	0	0	0	0	1	0	0	5	0	0	0
.............................................................................................................................................................ACTTCAGTTTCATTGCCTTTCA.................................................................................................	22	1	61.00	61	0	1	0	0	38	0	1	0	0	0	0	0	0	21	0	0	0
.......................................................................................................ATAAGGTAGAGAAATT.............................................................................................................................................................	16	1	38.00	38	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------A........................................................................................................................................	26	1	30.00	30	0	0	0	0	0	0	0	0	0	0	1	0	0	29	0	0	0
.............................................................................................................................................................ACTTCAGTTTCATTGCCTTTC..................................................................................................	21	1	19.00	19	0	0	0	0	18	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................CTTCAGTTTCATTGCCTTTCA.................................................................................................	21	1	18.00	18	0	3	0	0	4	0	0	1	0	0	0	0	0	10	0	0	0
.............................................................................................................................................................ACTTCAGTTTCATTGCCT.....................................................................................................	18	1	17.00	17	0	0	0	0	16	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTA-----------.........................................................................................................................................	25	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGTC-----------T........................................................................................................................................	25	1	15.00	15	0	2	0	0	0	0	0	0	0	0	2	0	0	11	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGA.....................................................................................................................................................	24	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0
..............................................................................................................................................................CTTCAGTTTCATTGCCTTTCAA................................................................................................	22	1	12.00	12	0	1	0	0	5	0	0	1	0	0	0	0	0	5	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATGTTG......................................................................................................................................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	1	0	0	9	0	0	0
.............................................................................................................................................................ACTTCAGTTTCATTGCCTTTCAA................................................................................................	23	1	10.00	10	0	0	0	0	0	0	0	1	0	0	0	0	0	9	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTA.......................................................................................................................................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGTC-----------.........................................................................................................................................	24	1	9.00	9	0	0	0	0	0	0	1	0	0	0	0	0	0	8	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGT.....................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	1	0	0	1	0	0	7	0	0	0
.......................................................................................................ATAAGGTAGAGAAAT..............................................................................................................................................................	15	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------C........................................................................................................................................	26	1	7.00	7	0	5	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTAA.....................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTG.......................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGC.....................................................................................................................................................	24	1	5.00	5	0	2	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0
..............................................................................................................................................................CTTCAGTTTCATTGCCTT....................................................................................................	18	1	5.00	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACTTCAGTTTCATTGCCTT....................................................................................................	19	1	5.00	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACTTCAGTTTCATTGCCTTT...................................................................................................	20	1	5.00	5	0	0	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------TT.......................................................................................................................................	27	1	4.00	4	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------TA.......................................................................................................................................	27	1	4.00	4	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGG.....................................................................................................................................................	24	1	4.00	4	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATGTT.......................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTG............................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------TAA......................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTC......................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTG-----------.........................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGAAA.........................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..............................................................................................................................................................CTTCAGTTTCATTGCCTTTC..................................................................................................	20	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................AAGGTAGAGAAATTGATG.........................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTA-----------A........................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------G........................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGGTAGAGAAATTGATGTT.......................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATA.........................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATT.........................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................AGGTAGAGAAATTGATGTTGT.....................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGTA-----------.........................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGAA-----------A........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................AAGGTAGAGAAATTGATGTTG......................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------TTT......................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................AGAGAAATTGATGTTGTC-----------T........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATG.........................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTAG.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................AGAGAAATTGATGTTG......................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................CTTCAGTTTCATTGCCTTTCAAA...............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................AAGGTAGAGAAATTGATGTTGTC-----------AT.......................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGGA-----------C........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................AGAGAAATTGATGTTGT.....................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTGT......................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................AGAGAAATTGATGTTGTC-----------.........................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................GGGGCG-CTCAGGCTATAAGGTA.....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGTC-----------C........................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TCAGACTTCAGTTTCATTGCCT.....................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TAGAGAAATTGATGTTGTC-----------.........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................TTCAGTTTCATTGCCTTTCA.................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................AAGGTAGAGAAATTGATGTTGTC-----------.........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................AGGTAGAGAAATTGATGTTGTC-----------.........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................CTTCAGTTTCATTGCCTTT...................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TAGAGAAATTGATGTT.......................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................GAGAAATTGATGTTGTC-----------.........................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................CTTCAGTTTCATTGCCTTTCT.................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................TAGAGAAATTGATGTTGTC-----------T........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................AGGTAGAGAAATTGATGTTGTC-----------ATA......................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................TAGAGAAATTGATGTTGT.....................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGAA..........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................TATAAGGTAGAGAAATTGATGT........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................GAAATTGATGTTGTC-----------.........................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATA.............................................................................................................................................................	16	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GCAATCAAAGGAA---------------------CTC-GACTCGACTT-GA-------ATCTACAA----------C-TACCTCGA-TGGGGCA-TTCAGGCTATAAGGTAGAGAAATTGATGTTGTC-----------TACACT--A----TTCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CATGCAACAG-------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................ATAAGGTAGAGAAATTGATGTT.......................................................................................................................................................	22	1	819.00	819	7	649	157	6
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGT.....................................................................................................................................................	24	1	764.00	764	2	697	61	4
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------.........................................................................................................................................	25	1	754.00	754	3	542	200	9
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------T........................................................................................................................................	26	1	486.00	486	0	352	130	4
.......................................................................................................ATAAGGTAGAGAAATTGATGTTG......................................................................................................................................................	23	1	393.00	393	4	376	10	3
.......................................................................................................ATAAGGTAGAGAAATTGATGT........................................................................................................................................................	21	1	28.00	28	2	22	4	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGTC-----------T........................................................................................................................................	25	1	9.00	9	1	6	2	0
.......................................................................................................ATAAGGTAGAGAAATTGATG.........................................................................................................................................................	20	1	7.00	7	0	7	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTT......................................................................................................................................................	23	1	6.00	6	0	6	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTT-----------.........................................................................................................................................	25	1	6.00	6	0	5	1	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGTC-----------.........................................................................................................................................	24	1	4.00	4	0	4	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------TT.......................................................................................................................................	27	1	4.00	4	0	2	2	0
........................................................................................................TAAGGTAGAGAAATTGATGTTGT.....................................................................................................................................................	23	1	4.00	4	0	3	1	0
........................................................................................................TAAGGTAGAGAAATTGATGTTG......................................................................................................................................................	22	1	3.00	3	0	3	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGG.....................................................................................................................................................	24	1	1.00	1	0	1	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTT-----------CT.......................................................................................................................................	27	1	1.00	1	0	0	0	1
........................................................................................................TAAGGTAGAGAAATTGATGTT.......................................................................................................................................................	21	1	1.00	1	0	0	1	0
.......................................................................................................ATAAGGTAGAGAAATTGA...........................................................................................................................................................	18	1	1.00	1	0	0	1	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTA-----------.........................................................................................................................................	25	1	1.00	1	0	1	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGA.....................................................................................................................................................	24	1	1.00	1	0	1	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTTGTC-----------TA.......................................................................................................................................	27	1	1.00	1	0	1	0	0
.......................................................................................................ATAAGGTAGAGAAATTGATGTC.......................................................................................................................................................	22	1	1.00	1	0	1	0	0
..........................................................................................................AGGTAGAGAAATTGATGTT.......................................................................................................................................................	19	1	1.00	1	0	1	0	0

droYak3

A---TCAAAAGAA---------------------CTC-GACTCGACTC-GA-------ATC--CAA----------C-CAACTTCA-TGGGGCA-CACAAGCTATAAGGTAGAGAAATTGTTGTCTTC-----------CACACT--A----TTCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTG------------------------------------ATAATG----ATAACATCG--TT------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................	22	1	1280.00	1280	30	51	23	1	1	16	1158	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	23	1	633.00	633	13	14	4	0	0	2	600	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGT........................................................................................................................................................	21	1	129.00	129	1	18	1	0	0	2	107	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	22	1	45.00	45	0	2	0	0	0	0	43	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTG.........................................................................................................................................................	20	1	23.00	23	0	2	0	0	0	1	20	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCC......................................................................................................................................................	23	1	5.00	5	2	0	1	0	0	0	2	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCA......................................................................................................................................................	23	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTC.......................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCTT.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGT...........................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................TATAAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................AAGGTAGAGAAATTGTTGTC.......................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTT.......................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................AGGTAGAGAAATTGTTGTC.......................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................CATCAGTTTAACTATCTTTCA.................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................AAGGTAGAGAAATTGTTGTCT......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTT..........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................ATAAGGTAGAGAAATTGTTGTCG......................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

AAAG---AA-------------------------CTC-GACTCGGCTCG-A-------ATC--CCA----------G-TACCTCCT-TGGGGCA-CTCAAGCTATAAGGTAGAAAAATTGTTGTCTTC-----------CACACT--A----TTCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTG------------------------------------ACAACG----ATAACATCG--TT------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................ATAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................	22	1	7500.00	7500	22	11	35	3	6700	729	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGT........................................................................................................................................................	21	1	605.00	605	3	1	1	0	549	51	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGTCT......................................................................................................................................................	23	1	300.00	300	7	0	4	0	258	31	0
.......................................................................................................ATAAGGTAGAAAAATTGTTG.........................................................................................................................................................	20	1	82.00	82	1	0	1	0	71	9	0
........................................................................................................TAAGGTAGAAAAATTGTTGTCT......................................................................................................................................................	22	1	68.00	68	1	0	0	0	65	2	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGTCA......................................................................................................................................................	23	1	19.00	19	0	0	0	0	18	1	0
........................................................................................................TAAGGTAGAAAAATTGTTGTC.......................................................................................................................................................	21	1	7.00	7	1	0	0	0	5	1	0
.........................................................................................................AAGGTAGAAAAATTGTTGTC.......................................................................................................................................................	20	1	6.00	6	0	0	0	0	6	0	0
.......................................................................................................ATAAGGTAGAAAAATTGTC..........................................................................................................................................................	19	1	6.00	6	0	0	0	0	6	0	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGTT.......................................................................................................................................................	22	1	4.00	4	0	0	0	0	4	0	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGTA.......................................................................................................................................................	22	1	3.00	3	0	0	0	0	1	2	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGTCC......................................................................................................................................................	23	1	3.00	3	0	0	0	0	3	0	0
........................................................................................................TAAGGTAGAAAAATTGTTGTCTT.....................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................CTGCAGTTTAACTATCTTTCA.................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGC........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................TAAGGTAGAAAAATTGTTGT........................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGTCTC.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................ATAAGGTAGAAAAATTGTTGTGA......................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................TAAGGTAGAAAAATTGTTGTCTTC-----------.........................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................ATAAGGTAGAAAAATTGTTT.........................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................TAAGGTAGAAAAATTGTTGTCA......................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dgr_37

scaffold_15252:3147256-3147314 +

Known Ortholog

Canonical miRNA

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads