ID:

dgr_362

 Coordinate:

scaffold_15112:3109721-3109871 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.0 -8.8 -8.6 -8.4

Flybase annnotation

CDS [Dgri\GH22725-cds]; exon [dgri_GLEANR_7054:4]; intron [Dgri\GH22725-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGTGCTGAATGGCATACGGGAGCCTGGTGGTACAGTGCATGCCACCGCAGGTACTATTTACCTACCTATTATAAATGAGAAATATAATTCTAATTTACGCATATATTTGACAGCAATCTGATGGGAACATATAATGATACCACAACTACCAAAGGCGTTCTTTGGCATTCTTCTACAGGTACACCTTCCTCATTAAACCGTGTGCAGATGATGATAAGGCCTAGATCTGATTGAAGTAGTAGGTGAATAGT
*******************************************************************************************************************.......(((.......................((((((.....))))))...)))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M041
female body
 V109
male body
...................................................................................................................................................................................................AACCGTGTGCAGATGATGATAAGGC............................... 25 0 1 4.00 4 2 2
.............................GTACAGTGCATGCCACCGCA.......................................................................................................................................................................................................... 20 0 1 2.00 2 2 0
......................................................................................................................................................AAAGGCGTTCTTTGGCATTCT................................................................................ 21 0 1 2.00 2 0 2
............................GGTACAGTGCATGCCACCGCA.......................................................................................................................................................................................................... 21 0 1 2.00 2 2 0
..................................................................................................................................................................................................AAACCGTGTGCAGATGATG...................................... 19 0 1 2.00 2 2 0
.....................................................................................................................................................................................................................ATAAGGCCTAGATCTGATTGAAGTAGTA.......... 28 0 1 2.00 2 0 2
...........GCATACGGGAGCCTGGTGGTACAG........................................................................................................................................................................................................................ 24 0 1 2.00 2 1 1
.......................................................................................................................................................................................................................................TGAGGTAGTAGTTGTATAGT 20 3 10 1.20 12 2 10
.......................................................................................................................................................................................................GTGTGCAGATGATGATAAGGC............................... 21 0 1 1.00 1 1 0
...........................................................................................................................................................................TCTACAGGTACACCTTCCTCATT......................................................... 23 0 1 1.00 1 1 0
.......................................................................................................................................................................................................................AAGGCCTAGATCTGATTGAAGTA............. 23 0 1 1.00 1 0 1
......................................................................................................................................................AAAGGCGTTCTTTGGCATTCTTCTACA.......................................................................... 27 0 1 1.00 1 0 1
...................GAGCCTGGTGGTACAGTGCA.................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0
...........................................................................................................................................................................................CCTCATTAAACCGTGTGCAGATGATG...................................... 26 0 1 1.00 1 0 1
...............................................................................................................................................AACTACCAAAGGCGTTCTTTG....................................................................................... 21 0 1 1.00 1 0 1
..........................................................................................................................................................................................................................GCCTAGATCTGATTGAAGTA............. 20 0 1 1.00 1 1 0
...................................................................................................................................................................................................AACCGTGTGCAGATGATGATAAGG................................ 24 0 1 1.00 1 0 1
...................................................................................................................ATCTGATGGGAACATATAATGATACC.............................................................................................................. 26 0 1 1.00 1 0 1
...................................................................................................................................TAATGATACCACAACTACCA.................................................................................................... 20 0 1 1.00 1 1 0
......................................................................................................................................................AAAGGCGTTCTTTGGCATT.................................................................................. 19 0 1 1.00 1 0 1
........................................................................................................................................................................................................................................GAAGTAGTAGGTGAATAGT 19 0 1 1.00 1 0 1
.......AATGGCATACGGGAGCCTGGTGCTACAG........................................................................................................................................................................................................................ 28 1 1 1.00 1 0 1
..................................................................................................................................................................TGGCATTCTTCTACAGGTACACCTT................................................................ 25 0 1 1.00 1 1 0
...............ACGGGAGCCTGGTGGTACAGTGCATG.................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0
....................................................................................................................................................................................................ACCGTGTGCAGATGATGATAAGGCCTAG........................... 28 0 1 1.00 1 1 0
...................................................................................................................................TAATGATACCACAACTACC..................................................................................................... 19 0 1 1.00 1 1 0
................................................................................................................................................ACTACCAAAGGCGTTCTTTG....................................................................................... 20 0 1 1.00 1 0 1
...........GCATACGGGAGCCTGGTG.............................................................................................................................................................................................................................. 18 0 2 1.00 2 2 0
......................................................................................................................................................AAAGGCGTTCTTTGGCATTCTT............................................................................... 22 0 1 1.00 1 0 1
................CGGGAGCCAGGTGGTACAGTG...................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1
...........................................................................................................................................................................TCTACAGGTACACCTTCCT............................................................. 19 0 1 1.00 1 1 0
..............................................................................................................................................................................................................GATGATGATAAGGCCTAGATCT....................... 22 0 1 1.00 1 1 0
.............................................................................................................................................ACAACTACCAAAGGCGTTCTTT........................................................................................ 22 0 1 1.00 1 1 0
........................................................................................................................................................................................................................AGGCCTAGATCTGATTGAAGTAGTA.......... 25 0 1 1.00 1 1 0
..................................................................................................................................................................................................AAACCGTGTGCAGATGATGAT.................................... 21 0 1 1.00 1 1 0
...............................................................................................................................................................................................ATTAAACCGTGTGCAGATGATG...................................... 22 0 1 1.00 1 1 0
.......................................................................................................................................................................................................................................TGAGGTAGTAGGTGTATAGT 20 2 1 1.00 1 0 1
..............................................................................................................................................................................................................GATGATGATAAGGCCTAGATCTGATT................... 26 0 1 1.00 1 1 0
.........................GGTGGTACAGTGCATGCC................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0
.....................................................................................................................................................................................................................................ATTGAAGTAGTAGGTGAATA.. 20 0 1 1.00 1 0 1
...................................................................................................................................................................................................AACCGTGTGCAGATGATCATA................................... 21 1 1 1.00 1 0 1
....................................................................................................................TCTGATGGGAACATATAATGATACCA............................................................................................................. 26 0 1 1.00 1 1 0
...........GCATACGGGAGCCTGGTGGTA........................................................................................................................................................................................................................... 21 0 2 1.00 2 1 1
................................................................................................................................................ACTACCAAAGGCGTTCTTT........................................................................................ 19 0 1 1.00 1 1 0
...........GCATACGGGAGCCTGGTGGTACAGTGC..................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0
.............ATACGGGAGCCTGGTGGTACAGTG...................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0
.......................................................................................................................................................AAGGCGTTCTTTGGCATTCT................................................................................ 20 0 1 1.00 1 0 1
....................................................................................................................................................................................................................................GATTGAAGTAGCAGGTGAATA.. 21 1 1 1.00 1 0 1
....................................................................................................................................................................................................................................GATTGAAGTAGTAGGTGAATA.. 21 0 1 1.00 1 0 1
......................................................................................................................................................AAAGGCGTTCTTTGGCATTC................................................................................. 20 0 1 1.00 1 1 0
.......................................................................................................................................................................................................................................TGAGGTAGTAGGTTTATAGT 20 3 7 0.86 6 2 4
................................................................................................................GCAATCTGATGGGAACATA........................................................................................................................ 19 0 3 0.67 2 1 1
.......................................................................................................................................................................................................................................TGAGGTAGTAGGTGTATACT 20 3 2 0.50 1 0 1
...........GCATACGGGAGCCTGGTGG............................................................................................................................................................................................................................. 19 0 2 0.50 1 1 0
....CTGAATGGCATACGGGAG..................................................................................................................................................................................................................................... 18 0 2 0.50 1 1 0
...........GCATACGGGAGCCTGGTGGTACA......................................................................................................................................................................................................................... 23 0 2 0.50 1 0 1
........ATGGCATACGGGAGCCTGGTG.............................................................................................................................................................................................................................. 21 0 2 0.50 1 0 1
.......AATGGCATACGGGAGCCTGGTGG............................................................................................................................................................................................................................. 23 0 2 0.50 1 0 1
..............TACGGGAGCCTGGTGGTACA......................................................................................................................................................................................................................... 20 0 2 0.50 1 0 1
.......................................................................................................................................GTTACCACATCTACCGAAGGCG.............................................................................................. 22 3 2 0.50 1 0 1
.........TGGCATACGGGAGCCTGGTGGT............................................................................................................................................................................................................................ 22 0 2 0.50 1 1 0
............CATACGGGAGCCTGGTGGT............................................................................................................................................................................................................................ 19 0 2 0.50 1 0 1
...........GCATACGGGAGCCTGGTGGT............................................................................................................................................................................................................................ 20 0 2 0.50 1 0 1
.............ATACGGGAGCCTGGTGGTACA......................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0
.....TGAATGGCATACGGGAGCCTGGT............................................................................................................................................................................................................................... 23 0 2 0.50 1 1 0
.........................................................................................................................................................................................................................................AGGTAGTAGGTGTATAGT 18 2 3 0.33 1 1 0
..............TACGGGAGCCTGGTGGTA........................................................................................................................................................................................................................... 18 0 3 0.33 1 0 1
.............................................................................................................GCGGCAATCTGATGGGAACATAT....................................................................................................................... 23 2 4 0.25 1 0 1
............................................................................................................AACAGCAATCTGATGGGAAC........................................................................................................................... 20 1 5 0.20 1 0 1
.......................................................................................................................................................................................................................................TGAGGTAGTAGGTTTATAG. 19 3 11 0.18 2 0 2
..........................................................................................................ATGACAGCAATCTGATGGGA............................................................................................................................. 20 1 7 0.14 1 0 1
.............................................................................................................ACAGCAATCTGATGGGAA............................................................................................................................ 18 0 8 0.13 1 0 1

Anti-sense strand reads

ACACGACTTACCGTATGCCCTCGGACCACCATGTCACGTACGGTGGCGTCCATGATAAATGGATGGATAATATTTACTCTTTATATTAAGATTAAATGCGTATATAAACTGTCGTTAGACTACCCTTGTATATTACTATGGTGTTGATGGTTTCCGCAAGAAACCGTAAGAAGATGTCCATGTGGAAGGAGTAATTTGGCACACGTCTACTACTATTCCGGATCTAGACTAACTTCATCATCCACTTATCA
********************************************************************************.......(((.......................((((((.....))))))...)))******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V109
male body
.............................................................................................................TATCATGAGACTACCCTTGTA......................................................................................................................... 21 3 4 0.25 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droGri2 scaffold_15112:3109671-3109921 - dgr_362 TGTGCTGAATGGCATACGGGAGCCTGGTGGTACAGTG---CATGCCACCGCAGGTACTATTTACC----------TACCTATTATAAA--TGA------------------------G-----------AAATA-----TAATTCTAATTTA------------------CGCATATA-TTTGACAGCAATCTGATGGGAACATATA---------ATGATACCACA----------------------------------ACT------ACCAAAGGCGTTCTTTGGCATTCT---TCTACAGGTA------CACCTTCCTCATTAAACCGTGTGCAGATGATGATAAGGCCTAGATCTG-AT-------T------------------GAAGTAGT---------AGGTGAATAGT
droVir3 scaffold_12875:2925471-2925683 + TGTGCTGAAATATATACAGGCGGCTGGTGGTACAACA---AATGTCACGCAAGGTTGGTATATCC---TT----------GATATC-----------------------------------CAAAAA------T-----A--------------------AGCATACTTATTCATA-T-TTTTTCAGTAATCTAATGGGAAAATATA---------ATGAGTCCACA----------------------------------TAT------GGAAAAGGCATAAATTGGCTTCTA---TTTTCTGGCC------ATAACGCCTCATTGAAAAATGTACAAATGATGATAAGGCATA---------------------------------------------------------------
droMoj3 scaffold_6473:7913963-7914198 + GGCATACTGAGGC---ACGGCGCCTGGTGGTACGACC---GATGCGGTCTCAGGTTAGTGCTAGATACTT----------TCTATACAATGGCAC---------------------AGATA-------TCT---------------ATG-T---------ACAT-----A-TCGTATC-TCTTTCAGTAATCTCAATGGTCAATACTTCAA---------TCACAGC-------------TCCA---------AA------GAT------GCTCGGAGTATTTTTTGGCT---------TGGCGCAC------AGAGCACATCCTTCAAGAAAGTACAAATGATGCTGCGACCCAAGACTG------------------------------------------------CTCAATTTA
droWil2 scf2_1100000004514:2183336-2183597 + AT--------CTTATCATGGGGCCTGGTGGTATGAAGACGATGGCAGCCTCAGGTGAGTTTTACTAAGA-----T-----TTTATTAA--TA------------------------------------------------T---TTAATTGATTTTACTTAC-----CTTTCGGTATATCCATTTAGCAATCTCAATGGACATTATATACCAAATGGAGAGGTCATT----------------------T---TGGATTTTCGA------GGTAAAGGCATTTTCTGGTATTCCGACTGGCACGATG------AAGATTATTCATTTAAATCGGTTCAGATGATGATACGACCGAGATCAT-AA-------T-----------------------------------AGGACAATAAT
dp5 4_group4:1865465-1865687 + TGTGCCGTCACTTACTCCAGTGCTTGGTGGTACAATT---CGTGTCATGACAGGTAAAAACATTT---AC----ATACT-----CG--------T---------------------AGCTCCAAAAA------G-----A--------------------AGGGCGTTCACCGATCTCTTTGCTTAGCCATCTGGCTGGAAATTATG---------GCGATAACTCC----------------------------------TAT------GGAAAGGGCATCGTCTGGGCTACG---TTTAAGGGTC------ACAACTACTCGCTGAAAGGCGCTCAGATGATGATAAGGCCGAG--------------------------------------------------------------
droPer2 scaffold_10:873763-873985 + TGTGCAGTCACTTACTCCAGTGCTTGGTGGTACAATT---CGTGTCATGACAGGTGAAAACACTT---AC----ATACT-----CG--------T---------------------AGCTCCAAAAA------G-----A--------------------AGGGCTTTCACCGATCTCTTTGCTTAGCCATCTGGCTGGAAATTATG---------GCGATAACTCC----------------------------------TCT------GGAAAGGGCATCCTCTGGGCTACG---TTTAAGGGTC------ACAACTACTCGCTGAAAGGCGCTCAGATGATGATAAGACCGAG--------------------------------------------------------------
droAna3 scaffold_13266:6970355-6970624 + TGTGCCCAGTACCACATTGGCGCTTGGTGGTACGATG---CGTGCCTAAACAGGTACATTAAATATTGA-----A-------TATAC-----------------------------------------------TTTAT-ATTATTTATTTGTA---CTAAT-----TTATTTGTA-T-ATTTAAAGTAATCTGAATGGCCAATATTTAAACTATGA-GAGTCCGATTACCACAATTTCTACCGACGTTAACCGAT-----ATA------TTAAATGGAATTCATTTGAG----------------T------CCAGCAAGCCCCTAAAGTTCGTTCAGATGATGATTCGCCCGAAATTTG-GG-------T------------------GC---------------TTTTAAATATT
droBip1 scf7180000396574:244210-244424 - TGTGCAGTCACGTACAGTAGTGCATGGTGGTATAACG---CCTGTCACCATAGGTAATATCTATC---GT----TTTT-----ACG--------T---------------------AGCCG-------TTAAAG-----T--------------------ACGAC------TTTTG-T-TTTCTCAGCAATCTGGCTGGAAACTATG---------GCGATAACACA----------------------------------CAT------GGAAAGGGTATCAACTGGTATCAA---TTCAAGGGGC------ACACCTACTCGCTAAAGCGGGCTCAAATGATGATAAGACCAAGA-------------------------------------------------------------
droKik1 scf7180000302270:609381-609642 - TGCGCCGCCAGGTTTACTGGTGCCTGGTGGTACAGGA---ATTGCCACGTGAGGTAAGTCTTGTTTA-TTACGAA-----------TTATGATAT---------------------GGTTT-------AAA---------------ATG-AA-----------------ATTTGTT-T-CTCATTAGCAACTTGTGCGGCAAATATG---------GCGATAATACC----------------------------------CAT------GGAAAGGGAGTGACCTGGAATTCA---TTTAGGGGTC------ACGACTACTCCCTCAAGCGCGCCGTGATGATGATCAGACCGAGAACGTCAGCCCTAAACTGAACTAACAGTTTT--------------------TGTATAATTGT
droFic1 scf7180000453924:516238-516456 - TGCGCCACAAATTACAACAGTGCTTGGTGGTACAACG---CCTGTCATCACAGGTAAATACTTCT---AC------------TAGAAA--TGT-----------------------------------------TTTATATTCACTATTTTA-----TTTTT------------TT-T-TCTTCAAGCAACTTGGCTGGCAAATACG---------GCGACAACACC----------------------------------CAT------GGAAAGGGCATCAACTGGTATCAG---TTTAAGGGGC------ACACCTACTCGCTAAAACGTGCGCAAATGATGATAAGACCGAAA-------------------------------------------------------------
droEle1 scf7180000491013:255243-255506 + TGCGCTAAAAACCACGGTGGAGGTTGGTGGTTCATTG---GTTGTGCATATAGGTATGAATATTA---AA------------TAAAAT--CAA-----------------------------------------ACTATTAC--TTTAATTATA---GCAAT------------TT-C-TTTCACAGTTTCCTTAATGGCAAATTCTTTAGTGATGGTAAAAGA--------------------------G--AAAGCGTAGAA------AGGCATGGAATATATTGGGGCTCC---TTTCATAGCTACGACTACCAAATGTCACTTACCTTTGTGGAAATGATGATTAGGCCTAAATCCC-TT-------T--------------AAGTAC---------------AATTGTACATT
droRho1 scf7180000780136:61653-61861 - TGTGCCACAAATTACAACGCCGCTTGGTGGTACAATG---CCTGTCACCACAGGTAAAGATTTTT---AT----ATATT-----T-------------------------------------------------TTTAT-ATTTTTAATTTAT-------AC------------TT-T-TTCTCTAGCCACTTGACTGGCAAGTATG---------GCGATAACAAC----------------------------------CAT------GGAAAGGGCATCAACTGGTATCAG---TTTAAGGGTC------ACACCTACTCGCTAAAACGTGCACAAATGTTGATAAGGCC-----------------------------------------------------------------
droBia1 scf7180000302292:599587-599848 - TGTGCGAA---TTACTTTGGCGGTTGGTGGTACCAGA---AATGTTTTTGGAGGTATTTATTTTC---TT------------ATTAAA--TAA------------------------GCT-------GATTACA-----TTTCACTTATTTACA---ACAAT------------TA-T-AATTTCAGTAAGCTCACAGGAAAGTACTACAAAGATGGAATATCA--------------------------CCAAGT-----AAT------GCAATTGGAATTCACTGGAGTTAT---TTTCGGGGCT------ACAAAAACTCGCTAATTTTTGCTGAAATGATGATAAAGCCCAAGTCCA-AG-------T------------------AAACCAGTG--------CTGTAAATAAA
droTak1 scf7180000415820:267379-267635 - TGTGCGGAATATTTTCTTGGTGGTTGGTGGTACCACA---GCTGTTTCCACTGGTATACTTATTC---AA------------ATTAAC--TGA------------------------------------TTAAA-----TATGACTAATTTACA---AAAAT------------TA-T-AATTACAGTAAGCTCACTGGAAAATACTACAAAGATGGAAAATCACCG----------------------------------TAT------GGTTATGGAATTCATTGGAGTGGA---TTTCGTGCCC------ATAAGAATTCGATAACATTTGCTGAAATGATGATTAGGCCCAAGTCCT-TG-------T------------------GAACCAAGC--------ATGTAACTAAA
droEug1 scf7180000409672:6929878-6930099 - TGTGCTACAAATTACAGCAGTGCTTGGTGGTACAATG---CCTGCCATCACAGGTATACATATTT---TC------------TAACAT--TAA------------------------GTTTAAGCCTGAAAATG-----TAATAT----------------------TTATTCATG-T-TTTTTTAGCAACTTGGCTGGTAAATATG---------GTGATACTGCT----------------------------------CAT------GGAAAGGGCATTAACTGGTATCAG---TGGAAGGGAC------ACACCTACTCGCTAAAACGTGCCCAAATGATGATCAGACC-----------------------------------------------------------------
dm3 chr2L:6357261-6357497 - TGTGCCGAGGAGTATGTGGGTGCTTGGTGGCATTTGA---ACTGCACTTACAGGTAATTATTTTG---TA-CGATTAT-----TTG--------C---------------------AGATT-------TT----------------AAGCAAT-------TT------------TA-T-TATTTCAGTAATCTATTCGGCATCTATGTGAAAGGTGATGAGGGG--------------------------C--AGTACTTTCAG------TGGAAGGGCATCGTCTGGCATTCT---TGGCGCACTG------AGAGTTATTCCTACAAGGTGATGCAAATGATGGTTCGACCGAAATGCC-AT-------T------------------G---------------------------
droSim2 x:16894336-16894612 + TGTGCCGCCGACGAATATGGTGGCTGGTGGTACTACG---ACTGCGCCAAGAGGTAAGTACGCCC---AT------------TATAGA--CAC------------------------G-T-------GTGTATG-----TAATACTAATCGGC-------GG------------AG-T-AACTGCAGCATGCTCAATGGCAAGTTCTACAAGGAGGGCC-----GCT-C--------------------GC--GG------AATGGAAAAACCAATGGCATCATGTGGGGCTCC---TGGCACAACAACGATTGGACCTACTCGCTCACCTTCGTGGAGATGATGATAAGGCCGCGAATAA-AT-------TAGA-----------------AATAATATTAATAATAGGAAA-ATGG
droSec2 scaffold_5:4427913-4428149 - TGTGCCGAGGAGTATGTGGGTGCTTGGTGGCATGTCA---ACTGCACTTACAGGTAATTATCTTG---TA-CGGTTAT-----TAG--------T---------------------AGATT-------TT----------------AAGCAAC-------TT------------TA-T-TATTTCAGTAATCTATTCGGCATCTATGTGAAAGGTGATGAGGGC--------------------------C--AGTACTTTCAG------TGGAAGGGGATCGTCTGGCACTCT---TGGCGCACTG------AGAGTTATTCCTACAAAGTGATGCAAATGATGGTTCGACCGAAATGCT-AT-------T------------------G---------------------------
droYak3 2L:17156715-17156767 - TGCGCGGAGCACCATCAGGGAGCTTGGTGGTACGACT---TCTGTTCGCGAAGGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:6770631-6770901 - TGTGCAGCCGACCATGGCGGTGGTTGGTGGTTTCACT---CGTGTTTTTCAAGGTAAAGATATGA---AA------------TTAAAA--T---TGGATTTGTGAGAAGTTTCTAC------------------TT----T---ATAATTCATA---TTACT------------TC-A-TATTACAGCTCGCTAAATGGACTTTATTTCAGAGAAGGGGAAACCGTC----------------------------------ATT------CTGAATGGAATTCACTGGGGTCGC---T------GGA------AATTCCACTCTTTAACTTTTGTTCAGATGATGATAAGACCGAAATTCT-TC-------T------------------AGATTAACGTTTAAAG-AAGTGTATAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
TGTGCTGAATGGCATACGGGAGCCTGGTGGTACAGTG---CATGCCACCGCAGGTACTATTTACC----------TACCTATTATAAA--TGA------------------------G-----------AAATA-----TAATTCTAATTTA------------------CGCATATA-TTTGACAGCAATCTGATGGGAACATATA---------ATGATACCACA----------------------------------ACT------ACCAAAGGCGTTCTTTGGCATTCT---TCTACAGGTA------CACCTTCCTCATTAAACCGTGTGCAGATGATGATAAGGCCTAGATCTG-AT-------T------------------GAAGTAGT---------AGGTGAATAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................AACCGTGTGCAGATGATGATAAGGC..................................................................2514.00422
.............................GTACAGTG---CATGCCACCGCA..............................................................................................................................................................................................................................................................................................................................................................................2012.00220
.................................................................................................................................................................................................................................................................................AAAGGCGTTCTTTGGCATTCT---.........................................................................................................................2112.00202
............................GGTACAGTG---CATGCCACCGCA..............................................................................................................................................................................................................................................................................................................................................................................2112.00220
......................................................................................................................................................................................................................................................................................................................................AAACCGTGTGCAGATGATG.........................................................................1912.00220
.........................................................................................................................................................................................................................................................................................................................................................ATAAGGCCTAGATCTG-AT-------T------------------GAAGTAGT---------A..........2812.00202
...........GCATACGGGAGCCTGGTGGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................2412.00211
...........................................................................................................................................................................................................................................................................................................................................GTGTGCAGATGATGATAAGGC..................................................................2111.00110
.........................................................................................................................................................................................................................................................................................................TCTACAGGTA------CACCTTCCTCATT............................................................................................2311.00110
...........................................................................................................................................................................................................................................................................................................................................................AAGGCCTAGATCTG-AT-------T------------------GAAGTA......................2311.00101
.................................................................................................................................................................................................................................................................................AAAGGCGTTCTTTGGCATTCT---TCTACA...................................................................................................................2711.00101
...................GAGCCTGGTGGTACAGTG---CA........................................................................................................................................................................................................................................................................................................................................................................................2011.00110
...............................................................................................................................................................................................................................................................................................................................CCTCATTAAACCGTGTGCAGATGATG.........................................................................2611.00101
..................................................................................................................................................................................................................................A----------------------------------ACT------ACCAAAGGCGTTCTTTG...................................................................................................................................2111.00101
..............................................................................................................................................................................................................................................................................................................................................................GCCTAGATCTG-AT-------T------------------GAAGTA......................2011.00110
.......................................................................................................................................................................................................................................................................................................................................AACCGTGTGCAGATGATGATAAGG...................................................................2411.00101
.............................................................................................................................................................................................ATCTGATGGGAACATATA---------ATGATACC..................................................................................................................................................................................................2611.00101
.............................................................................................................................................................................................................TA---------ATGATACCACA----------------------------------ACT------ACCA................................................................................................................................................2011.00110
.................................................................................................................................................................................................................................................................................AAAGGCGTTCTTTGGCATT..............................................................................................................................1911.00101
......................................................................................................................................................................................................................................................................................................................................................................................................GAAGTAGT---------AGGTGAATAGT1911.00101
.............................................................................................................................................................................................................................................................................................TGGCATTCT---TCTACAGGTA------CACCTT...................................................................................................2511.00110
...............ACGGGAGCCTGGTGGTACAGTG---CATG......................................................................................................................................................................................................................................................................................................................................................................................2611.00110
........................................................................................................................................................................................................................................................................................................................................ACCGTGTGCAGATGATGATAAGGCCTAG..............................................................2811.00110
.............................................................................................................................................................................................................TA---------ATGATACCACA----------------------------------ACT------ACC.................................................................................................................................................1911.00110
.....................................................................................................................................................................................................................................................................ACT------ACCAAAGGCGTTCTTTG...................................................................................................................................2011.00101
...........GCATACGGGAGCCTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................1821.00220
.................................................................................................................................................................................................................................................................................AAAGGCGTTCTTTGGCATTCT---T........................................................................................................................2211.00101
.........................................................................................................................................................................................................................................................................................................TCTACAGGTA------CACCTTCCT................................................................................................1911.00110
..................................................................................................................................................................................................................................................................................................................................................GATGATGATAAGGCCTAGATCT..........................................................2211.00110
................................................................................................................................................................................................................................ACA----------------------------------ACT------ACCAAAGGCGTTCTTT....................................................................................................................................2211.00110
............................................................................................................................................................................................................................................................................................................................................................AGGCCTAGATCTG-AT-------T------------------GAAGTAGT---------A..........2511.00110
......................................................................................................................................................................................................................................................................................................................................AAACCGTGTGCAGATGATGAT.......................................................................2111.00110
...................................................................................................................................................................................................................................................................................................................................ATTAAACCGTGTGCAGATGATG.........................................................................2211.00110
..................................................................................................................................................................................................................................................................................................................................................GATGATGATAAGGCCTAGATCTG-AT-------T------------------............................2611.00110
.........................GGTGGTACAGTG---CATGCC....................................................................................................................................................................................................................................................................................................................................................................................1811.00110
..........................................................................................................................................................................................................................................................................................................................................................................AT-------T------------------GAAGTAGT---------AGGTGAATA..2011.00101
..............................................................................................................................................................................................TCTGATGGGAACATATA---------ATGATACCA.................................................................................................................................................................................................2611.00110
...........GCATACGGGAGCCTGGTGGTA..................................................................................................................................................................................................................................................................................................................................................................................................2121.00211
.....................................................................................................................................................................................................................................................................ACT------ACCAAAGGCGTTCTTT....................................................................................................................................1911.00110
...........GCATACGGGAGCCTGGTGGTACAGTG---C.........................................................................................................................................................................................................................................................................................................................................................................................2711.00110
.............ATACGGGAGCCTGGTGGTACAGTG---..........................................................................................................................................................................................................................................................................................................................................................................................2411.00110
..................................................................................................................................................................................................................................................................................AAGGCGTTCTTTGGCATTCT---.........................................................................................................................2011.00101
........................................................................................................................................................................................................................................................................................................................................................................G-AT-------T------------------GAAGTAGT---------AGGTGAATA..2111.00101
.................................................................................................................................................................................................................................................................................AAAGGCGTTCTTTGGCATTC.............................................................................................................................2011.00110
..........................................................................................................................................................................................GCAATCTGATGGGAACATA.....................................................................................................................................................................................................................1930.67211
...........GCATACGGGAGCCTGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................1920.50110
....CTGAATGGCATACGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................1820.50110
...........GCATACGGGAGCCTGGTGGTACA................................................................................................................................................................................................................................................................................................................................................................................................2320.50101
........ATGGCATACGGGAGCCTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................2120.50101
.......AATGGCATACGGGAGCCTGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................2320.50101
..............TACGGGAGCCTGGTGGTACA................................................................................................................................................................................................................................................................................................................................................................................................2020.50101
.........TGGCATACGGGAGCCTGGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................2220.50110
............CATACGGGAGCCTGGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................1920.50101
...........GCATACGGGAGCCTGGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................2020.50101
.............ATACGGGAGCCTGGTGGTACA................................................................................................................................................................................................................................................................................................................................................................................................2120.50110
.....TGAATGGCATACGGGAGCCTGGT......................................................................................................................................................................................................................................................................................................................................................................................................2320.50110
..............TACGGGAGCCTGGTGGTA..................................................................................................................................................................................................................................................................................................................................................................................................1830.33101
.......................................................................................................................................................................................ACAGCAATCTGATGGGAA.........................................................................................................................................................................................................................1880.13101
droVir3
TGTGCTGAAATATATACAGGCGGCTGGTGGTACAACA---AATGTCACGCAAGGTTGGTATATCC---TT----------GATATC-----------------------------------CAAAAA------T-----A--------------------AGCATACTTATTCATA-T-TTTTTCAGTAATCTAATGGGAAAATATA---------ATGAGTCCACA----------------------------------TAT------GGAAAAGGCATAAATTGGCTTCTA---TTTTCTGGCC------ATAACGCCTCATTGAAAAATGTACAAATGATGATAAGGCATA---------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GGCATACTGAGGC---ACGGCGCCTGGTGGTACGACC---GATGCGGTCTCAGGTTAGTGCTAGATACTT----------TCTATACAATGGCAC---------------------AGATA-------TCT---------------ATG-T---------ACAT-----A-TCGTATC-TCTTTCAGTAATCTCAATGGTCAATACTTCAA---------TCACAGC-------------TCCA---------AA------GAT------GCTCGGAGTATTTTTTGGCT---------TGGCGCAC------AGAGCACATCCTTCAAGAAAGTACAAATGATGCTGCGACCCAAGACTG------------------------------------------------CTCAATTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droWil2
AT--------CTTATCATGGGGCCTGGTGGTATGAAGACGATGGCAGCCTCAGGTGAGTTTTACTAAGA-----T-----TTTATTAA--TA------------------------------------------------T---TTAATTGATTTTACTTAC-----CTTTCGGTATATCCATTTAGCAATCTCAATGGACATTATATACCAAATGGAGAGGTCATT----------------------T---TGGATTTTCGA------GGTAAAGGCATTTTCTGGTATTCCGACTGGCACGATG------AAGATTATTCATTTAAATCGGTTCAGATGATGATACGACCGAGATCAT-AA-------T-----------------------------------AGGACAATAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TGTGCCGTCACTTACTCCAGTGCTTGGTGGTACAATT---CGTGTCATGACAGGTAAAAACATTT---AC----ATACT-----CG--------T---------------------AGCTCCAAAAA------G-----A--------------------AGGGCGTTCACCGATCTCTTTGCTTAGCCATCTGGCTGGAAATTATG---------GCGATAACTCC----------------------------------TAT------GGAAAGGGCATCGTCTGGGCTACG---TTTAAGGGTC------ACAACTACTCGCTGAAAGGCGCTCAGATGATGATAAGGCCGAG--------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................ATAACTCC----------------------------------TAT------GGAAAGGG............................................................................................................................................1911.0010100000000
droPer2
TGTGCAGTCACTTACTCCAGTGCTTGGTGGTACAATT---CGTGTCATGACAGGTGAAAACACTT---AC----ATACT-----CG--------T---------------------AGCTCCAAAAA------G-----A--------------------AGGGCTTTCACCGATCTCTTTGCTTAGCCATCTGGCTGGAAATTATG---------GCGATAACTCC----------------------------------TCT------GGAAAGGGCATCCTCTGGGCTACG---TTTAAGGGTC------ACAACTACTCGCTGAAAGGCGCTCAGATGATGATAAGACCGAG--------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TGTGCCCAGTACCACATTGGCGCTTGGTGGTACGATG---CGTGCCTAAACAGGTACATTAAATATTGA-----A-------TATAC-----------------------------------------------TTTAT-ATTATTTATTTGTA---CTAAT-----TTATTTGTA-T-ATTTAAAGTAATCTGAATGGCCAATATTTAAACTATGA-GAGTCCGATTACCACAATTTCTACCGACGTTAACCGAT-----ATA------TTAAATGGAATTCATTTGAG----------------T------CCAGCAAGCCCCTAAAGTTCGTTCAGATGATGATTCGCCCGAAATTTG-GG-------T------------------GC---------------TTTTAAATATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................CTACCGACGTTAACCGAT-----ATA------TTAAATGG............................................................................................................................................2920.501100000
..........................................................................................................................................................................................................................................................................................CATTTGAG----------------T------CCAGCAAGCCCCTA...........................................................................................2320.501000010
............................................................................................................................................................................................................................................................................................................................GCAAGCCCCTAAAGTTCGTTCAG...............................................................................2320.501100000
.........................................................................................................................................................................................AGTAATCTGAATGGCCAATATTTAAACT.............................................................................................................................................................................................................2820.501100000
.......................................................................................................................................................................................................................................................................................ATTCATTTGAG----------------T------CCAGCAAGCCCCTA...........................................................................................2620.501100000
............................................................................................................................................................................................................ATTTAAACTATGA-GAGTCCGA................................................................................................................................................................................................2120.501000010
.................................................................................................................................................................................................................................ATTACCACAATTTCTACCGACGT..........................................................................................................................................................................2320.501000010
................................................................................................................................................................................................................................................................................................AG----------------T------CCAGCAAGCCCCTAAAGTTCGTTCAG...............................................................................2920.501100000
..............................................................................................................................................................................................................................................................................................................................................TTCAGATGATGATTCGCCCGA...............................................................2120.501100000
.........................................................................................................................................................................................................................................................................................................................CCAGCAAGCCCCTAAAGTTCGTTCAGAT.............................................................................2820.501100000
..........................................................................................................................................................................................................................................................................................................................................TTCGTTCAGATGATGATTCGCCCG................................................................2420.501100000
...........................................................................................................................................................................................................................................................................................ATTTGAG----------------T------CCAGCAAGCCCCTA...........................................................................................2220.501000010
....................................................................................................................................................................................................................................................................................GGAATTCATTTGAG----------------T------CCAGCAAGCC...............................................................................................2520.501100000
..............................................................................................................................................................................................................................................................................................................................AAGCCCCTAAAGTTCGTTC.................................................................................1920.501100000
.................................................................................................................................................................................................................................................................................................G----------------T------CCAGCAAGCCCCTAAAGTTCGT...................................................................................2420.501000010
........................................................................................................................................................................................................................................................................................TTCATTTGAG----------------T------CCAGCAAGCCCCT............................................................................................2420.501000001
...................................................................................................................................................................................................................................TACCACAATTTCTACCGACGTTAACCG....................................................................................................................................................................2720.501100000
...........................................................................................................................................................................................................TATTTAAACTATGA-GAGTCCGAT...............................................................................................................................................................................................2320.501000010
.................................................................................................................................................................................................................................................................................................G----------------T------CCAGCAAGCCCCTAAAGTT......................................................................................2120.501000010
...............................................................................................................................................................................................................................CGATTACCACAATTTCTACCGACGTTA........................................................................................................................................................................2720.501100000
..........................................................................................................................................................................................................................................................................................CATTTGAG----------------T------CCAGCAAGCCCCTAAAG........................................................................................2620.501100000
..............................................................................................................................................................................................................TTAAACTATGA-GAGTCCGATT..............................................................................................................................................................................................2120.501000010
........................................................................................................................................................................................................CAATATTTAAACTATGA-GAGTCCGA................................................................................................................................................................................................2520.501000010
................................................................................................................................................................................................................................................................................................................................................CAGATGATGATTCGCCCGAA..............................................................2020.501100000
.....................................................................................................................................................................................................................ATGA-GAGTCCGATTACCACA........................................................................................................................................................................................2030.331000010
.............ACATTGGCGCTTGGTGGTA..................................................................................................................................................................................................................................................................................................................................................................................................1930.331100000
.....................................................................................................................................................................................................................ATGA-GAGTCCGATTACCACAAT......................................................................................................................................................................................2230.331000010
....................................................................................................................................................................................................................TATGA-GAGTCCGATTACCACA........................................................................................................................................................................................2130.331000010
droBip1
TGTGCAGTCACGTACAGTAGTGCATGGTGGTATAACG---CCTGTCACCATAGGTAATATCTATC---GT----TTTT-----ACG--------T---------------------AGCCG-------TTAAAG-----T--------------------ACGAC------TTTTG-T-TTTCTCAGCAATCTGGCTGGAAACTATG---------GCGATAACACA----------------------------------CAT------GGAAAGGGTATCAACTGGTATCAA---TTCAAGGGGC------ACACCTACTCGCTAAAGCGGGCTCAAATGATGATAAGACCAAGA-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGCGCCGCCAGGTTTACTGGTGCCTGGTGGTACAGGA---ATTGCCACGTGAGGTAAGTCTTGTTTA-TTACGAA-----------TTATGATAT---------------------GGTTT-------AAA---------------ATG-AA-----------------ATTTGTT-T-CTCATTAGCAACTTGTGCGGCAAATATG---------GCGATAATACC----------------------------------CAT------GGAAAGGGAGTGACCTGGAATTCA---TTTAGGGGTC------ACGACTACTCCCTCAAGCGCGCCGTGATGATGATCAGACCGAGAACGTCAGCCCTAAACTGAACTAACAGTTTT--------------------TGTATAATTGTSizeHit CountTotal NormTotal
No Reads
droFic1
TGCGCCACAAATTACAACAGTGCTTGGTGGTACAACG---CCTGTCATCACAGGTAAATACTTCT---AC------------TAGAAA--TGT-----------------------------------------TTTATATTCACTATTTTA-----TTTTT------------TT-T-TCTTCAAGCAACTTGGCTGGCAAATACG---------GCGACAACACC----------------------------------CAT------GGAAAGGGCATCAACTGGTATCAG---TTTAAGGGGC------ACACCTACTCGCTAAAACGTGCGCAAATGATGATAAGACCGAAA-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGCGCTAAAAACCACGGTGGAGGTTGGTGGTTCATTG---GTTGTGCATATAGGTATGAATATTA---AA------------TAAAAT--CAA-----------------------------------------ACTATTAC--TTTAATTATA---GCAAT------------TT-C-TTTCACAGTTTCCTTAATGGCAAATTCTTTAGTGATGGTAAAAGA--------------------------G--AAAGCGTAGAA------AGGCATGGAATATATTGGGGCTCC---TTTCATAGCTACGACTACCAAATGTCACTTACCTTTGTGGAAATGATGATTAGGCCTAAATCCC-TT-------T--------------AAGTAC---------------AATTGTACATTSizeHit CountTotal NormTotal
No Reads
droRho1
TGTGCCACAAATTACAACGCCGCTTGGTGGTACAATG---CCTGTCACCACAGGTAAAGATTTTT---AT----ATATT-----T-------------------------------------------------TTTAT-ATTTTTAATTTAT-------AC------------TT-T-TTCTCTAGCCACTTGACTGGCAAGTATG---------GCGATAACAAC----------------------------------CAT------GGAAAGGGCATCAACTGGTATCAG---TTTAAGGGTC------ACACCTACTCGCTAAAACGTGCACAAATGTTGATAAGGCC-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGTGCGAA---TTACTTTGGCGGTTGGTGGTACCAGA---AATGTTTTTGGAGGTATTTATTTTC---TT------------ATTAAA--TAA------------------------GCT-------GATTACA-----TTTCACTTATTTACA---ACAAT------------TA-T-AATTTCAGTAAGCTCACAGGAAAGTACTACAAAGATGGAATATCA--------------------------CCAAGT-----AAT------GCAATTGGAATTCACTGGAGTTAT---TTTCGGGGCT------ACAAAAACTCGCTAATTTTTGCTGAAATGATGATAAAGCCCAAGTCCA-AG-------T------------------AAACCAGTG--------CTGTAAATAAASizeHit CountTotal NormTotal
No Reads
droTak1
TGTGCGGAATATTTTCTTGGTGGTTGGTGGTACCACA---GCTGTTTCCACTGGTATACTTATTC---AA------------ATTAAC--TGA------------------------------------TTAAA-----TATGACTAATTTACA---AAAAT------------TA-T-AATTACAGTAAGCTCACTGGAAAATACTACAAAGATGGAAAATCACCG----------------------------------TAT------GGTTATGGAATTCATTGGAGTGGA---TTTCGTGCCC------ATAAGAATTCGATAACATTTGCTGAAATGATGATTAGGCCCAAGTCCT-TG-------T------------------GAACCAAGC--------ATGTAACTAAASizeHit CountTotal NormTotal
No Reads
droEug1
TGTGCTACAAATTACAGCAGTGCTTGGTGGTACAATG---CCTGCCATCACAGGTATACATATTT---TC------------TAACAT--TAA------------------------GTTTAAGCCTGAAAATG-----TAATAT----------------------TTATTCATG-T-TTTTTTAGCAACTTGGCTGGTAAATATG---------GTGATACTGCT----------------------------------CAT------GGAAAGGGCATTAACTGGTATCAG---TGGAAGGGAC------ACACCTACTCGCTAAAACGTGCCCAAATGATGATCAGACC-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGTGCCGAGGAGTATGTGGGTGCTTGGTGGCATTTGA---ACTGCACTTACAGGTAATTATTTTG---TA-CGATTAT-----TTG--------C---------------------AGATT-------TT----------------AAGCAAT-------TT------------TA-T-TATTTCAGTAATCTATTCGGCATCTATGTGAAAGGTGATGAGGGG--------------------------C--AGTACTTTCAG------TGGAAGGGCATCGTCTGGCATTCT---TGGCGCACTG------AGAGTTATTCCTACAAGGTGATGCAAATGATGGTTCGACCGAAATGCC-AT-------T------------------G---------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................TCTATGTGAAAGGTGATGAGG....................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CGAGGAGTATGTGGGTGCTTGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTTCAG------TGGAAGGGCATCGTCTGG..................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TTCGGCATCTATGTGAAAGGTGATG.......................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TATGTGAAAGGTGATGAGGG...................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TCCTACAAGGTGATGCAAATGATGGT.......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GG--------------------------C--AGTACTTTCAG------TGGAAGGGCA..........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ATGTGAAAGGTGATGAGGGG--------------------------C--.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TCT---TGGCGCACTG------AGAGTTATTCCTACA..........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................T---TGGCGCACTG------AGAGTTATTCCTACAA.........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................ATCTATGTGAAAGGTGATGAGGC...................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGAGGGG--------------------------C--AGTACTTTCAG------TGGAAGG.............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGTGCCGAGGAGTATGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................TTCAG------TGGAAGGGCATCGTCTGG..................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
TGTGCCGAGGAGTATGTGGGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAAGGTGATGCAAATGATGGTTCGA...................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGTGCCGAGGAGTATGTGGGTGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCATCTATGTGAAAGGTGATGAGGGA--------------------------........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................CT---TGGCGCACTG------AGAGTTATTCCTA............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGAGGGG--------------------------C--AGTACTTTCAG------TGGAAG..............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TACTTTCAG------TGGAAGGGCATCGTCTGG..................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TGAAAGGTGATGAGGGG--------------------------C--AGT..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GA---ACTGCACTTACAGGTTCG........................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................ATTATTTTG---TA-CGATTGG-----...............................................................................................................................................................................................................................................................................................................................................18150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GAAAGGTGATGAGGGG--------------------------G--T....................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droSim2
TGTGCCGCCGACGAATATGGTGGCTGGTGGTACTACG---ACTGCGCCAAGAGGTAAGTACGCCC---AT------------TATAGA--CAC------------------------G-T-------GTGTATG-----TAATACTAATCGGC-------GG------------AG-T-AACTGCAGCATGCTCAATGGCAAGTTCTACAAGGAGGGCC-----GCT-C--------------------GC--GG------AATGGAAAAACCAATGGCATCATGTGGGGCTCC---TGGCACAACAACGATTGGACCTACTCGCTCACCTTCGTGGAGATGATGATAAGGCCGCGAATAA-AT-------TAGA-----------------AATAATATTAATAATAGGAAA-ATGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................GCAAGTTCTACAAGGAGGGC........................................................................................................................................................................................................2012.00220000000000000000
......................................................................................................................................................................................................GCAAGTTCTACAAGGAGGGG........................................................................................................................................................................................................2011.00110000000000000000
droSec2
TGTGCCGAGGAGTATGTGGGTGCTTGGTGGCATGTCA---ACTGCACTTACAGGTAATTATCTTG---TA-CGGTTAT-----TAG--------T---------------------AGATT-------TT----------------AAGCAAC-------TT------------TA-T-TATTTCAGTAATCTATTCGGCATCTATGTGAAAGGTGATGAGGGC--------------------------C--AGTACTTTCAG------TGGAAGGGGATCGTCTGGCACTCT---TGGCGCACTG------AGAGTTATTCCTACAAAGTGATGCAAATGATGGTTCGACCGAAATGCT-AT-------T------------------G---------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGCGCGGAGCACCATCAGGGAGCTTGGTGGTACGACT---TCTGTTCGCGAAGGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGTGCAGCCGACCATGGCGGTGGTTGGTGGTTTCACT---CGTGTTTTTCAAGGTAAAGATATGA---AA------------TTAAAA--T---TGGATTTGTGAGAAGTTTCTAC------------------TT----T---ATAATTCATA---TTACT------------TC-A-TATTACAGCTCGCTAAATGGACTTTATTTCAGAGAAGGGGAAACCGTC----------------------------------ATT------CTGAATGGAATTCACTGGGGTCGC---T------GGA------AATTCCACTCTTTAACTTTTGTTCAGATGATGATAAGACCGAAATTCT-TC-------T------------------AGATTAACGTTTAAAG-AAGTGTATAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:20 PM