ID:

dgr_36

 Coordinate:

scaffold_14906:4172175-4172237 +

 Confidence:

candidate

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-60.1 -59.9 -59.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCTTTGTAATATGTTTTTTTGTTAATTGCACAAACTCCCGTCGGGATTCGTCTTCAGGGAGGGATTTATAGCTTTCGTTTAGTACTCGCTGTGAATCTCTCCCTGATGCTGAATCCCGACGGGATTCAAAATCTAGACAAATTTAACCTGGAGCCAGCAATAC

***********************************(((((((((((((((...(((((((((((((((((((...............)))))))))))))))))))...)))))))))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M041

female body

 V109

male body
..................................................TCTTCAGGGAGGGATTTATAGC........................................................................................... 22 0 1 4.00 4 2 2
.........................................................................................TGTGAATCTCTCCCTGATGCTGA................................................... 23 0 1 1.00 1 0 1
..........................................................................................GTGAATCTCTCCCTGATGCTG.................................................... 21 0 1 1.00 1 1 0

Anti-sense strand reads

AGAAACATTATACAAAAAAACAATTAACGTGTTTGAGGGCAGCCCTAAGCAGAAGTCCCTCCCTAAATATCGAAAGCAAATCATGAGCGACACTTAGAGAGGGACTACGACTTAGGGCTGCCCTAAGTTTTAGATCTGTTTAAATTGGACCTCGGTCGTTATG

************************************(((((((((((((((...(((((((((((((((((((...............)))))))))))))))))))...)))))))))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M041

female body
.................................................................................................................GGGGCTGTCCTAAGTTTG................................ 18 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droGri2 scaffold_14906:4172125-4172287 + dgr_36 candidate TCTTTGTAATATGTTTTTTTGTTAATTGCACAAACTCCCGTCGGGATTCGTCTTCAGGGAGGGATTTATAGCTTTCGTTTAGTACTCGCTGTGAATCTCTCCCTGATGCTGAATCCCGACGGGATTCAAAATCTAGACAAATTTAACCTGGAGCCAGCAATAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
TCTTTGTAATATGTTTTTTTGTTAATTGCACAAACTCCCGTCGGGATTCGTCTTCAGGGAGGGATTTATAGCTTTCGTTTAGTACTCGCTGTGAATCTCTCCCTGATGCTGAATCCCGACGGGATTCAAAATCTAGACAAATTTAACCTGGAGCCAGCAATACSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................TCTTCAGGGAGGGATTTATAGC...........................................................................................2214.00422
.........................................................................................TGTGAATCTCTCCCTGATGCTGA...................................................2311.00101
..........................................................................................GTGAATCTCTCCCTGATGCTG....................................................2111.00110

Generated: 10/20/2015 at 06:45 PM