dgr_359

exon [dgri_GLEANR_7092:6]; CDS [Dgri\GH22767-cds]; exon [dgri_GLEANR_7092:5]; CDS [Dgri\GH22767-cds]; intron [Dgri\GH22767-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

##################################################---------------------------------------------------------------------------################################################## GCAACAACAACAACAGCAACAGCAGCAATAATAGCACAACAACAACTGAGGTGGCCTGTTCGTGACAACCGCCAAAGCCACCAGGACAACAGCAGCAGCAGCAACAACAACAACACCAACAACAGCAACAACAACAGTTATCACAACAGCAACATCAGCCACCACCGGCACCGCC ************************************************.....(((((..((.............((....)).............))....................)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
................................................................................CCAGGACAACAGCAGCAGCA...........................................................................	20	0	1	1.00	1	1
.....................................AACAATAACTGAGGTGTCC.......................................................................................................................	19	2	10	0.10	1	1
GCAACAACAACAACAGCAAC...........................................................................................................................................................	20	0	20	0.05	1	1

CGTTGTTGTTGTTGTCGTTGTCGTCGTTATTATCGTGTTGTTGTTGACTCCACCGGACAAGCACTGTTGGCGGTTTCGGTGGTCCTGTTGTCGTCGTCGTCGTTGTTGTTGTTGTGGTTGTTGTCGTTGTTGTTGTCAATAGTGTTGTCGTTGTAGTCGGTGGTGGCCGTGGCGG ************************************************.....(((((..((.............((....)).............))....................)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
...................................................................GGGCGGTATCGGTGGTCCAGT.......................................................................................	21	3	3	1.00	3	3	0
....................................................................GGCGGTACCGGTGGTCCAGT.......................................................................................	20	3	10	0.60	6	5	1
...................................................................GGGCGGTATCGGTGGTCCA.........................................................................................	19	3	18	0.11	2	2	0
.....................................................................GCTGTCTCGGTGGTCCAGT.......................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15112:2113285-2113459 -	dgr_359	GCAACAACAA---CAACAGCAACAGCAGCAATAATAGCA-CAACAACAACTGAGGTGGCC-TGTTCGTGACAACCGCCAAA------------------GCC------A------------CCAGGACAACAGCAGCAGCAGCAACAACAACA---------------A-------C------AC------CAACAACAGCAAC-AACAACAGTTATC---------AC---------AACA------GCAACATCAGCCACC--------------------A------CC---GGCA-CCG-CC
droVir3	scaffold_9769:4554-4731 +		GCAGCAACAG---CAACAACACCAGCAGCAACAGCAGCAGCAACAGCAACAAGAGCAGCAGCAACAACAG------------------------CAGCAGCAACA---C------------CAGTACCAACAGCAGCATCAGCA------------------------ACAGCA-------------------A---------C-AACAGCAAATACAGCAGCAGCAAC------------------------AACAGCTCGAGGGACTCCAGCATCAGCCAAA------TC---AGCCGCCTGAC
droMoj3	scaffold_6540:28255754-28255923 +		GCAACAGAAG---CAACAGCAACAGCAGCAACAGAAGCAACAGCAACAGCAGAAGCAACAGCAGAGAGAA------------------------CAGCAGCA------ACTGCAA------CAGCAGCAACAGCAGCAAC------------------------------AACA-GCAGC---AA------CTGCAACAGCAGC-AACAACAGCAGCA---------AC---------TGCA------ACAGCAGCAACAA---------------------CA------TC---AGCA-ACA-GC
droWil2	scf2_1100000003252:4687-4871 -		GCAACAATAT---CAACAGCAACAGCAACAATATCAACAGCAACAGCAACAATATCAACAGCAACAGCAACAACAGCAGCAGCAACAGGA---------------------ACAACTGCAGCAGCA---ACAATATCAACAGCA------------------------ACAGCAA-C------AACAGCAGGAG------CAACA-ATATCAACAGCA---------AC---------AGCA------ACAACAGCAGCAG---------------------CA------AC---AGCA-ACA-AC
dp5	2:6797411-6797578 +		GCAGCAGCAGGTACAGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAACTGCAGCAGCAGCAACTGCA---------------------------GCAGCA------G------------CAACAGCAGCAACAGCAGCAGCA------------------------ACATCA-------------GCAGCAG------CAACA-TCAGCAACAGCA---------AC---------AGCAACAACAGCAGCTGCAGCCCCC--------------------A------CC---AAGA-CCC-CC
droPer2	scaffold_0:634981-635154 +		GCAACATCAG---CAGCAACAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATCAG------------------------CAACAGCA------A------------CATCAGCAGCAACAGCAGCAGCA------------------------GCAACAA-C------AGCAGCAGCAG------CAACA-TCAGCAACAGCA---------AC---------AGCAACAACAGCAGCTGCAGCCCCC--------------------C------CC---AAGA-CCC-CC
droAna3	scaffold_13337:9289895-9290065 +		GCAACATCAG---CAGCAGCAGCAGCAGCAATATCAGCAGCATCAGCAACTACTGTCGCAGCAGCAGCAGCTCTTG------------------TCGCAGCA------A------------CAACAGCAGCAGCAGCAGCAGCA------------------------ATACCA-GC------AGCCG---CAGCAG---CATC----AGCAGCATCA---------CT---------TCCA------GCAGCAACAGCAGCA--------------------G------CA---GCCG-CCG-CT
droBip1	scf7180000395895:8219-8388 +		ACAACAACAA---CAACAACAACAGCAGCAGTAGTAGCAACAACAACAGTAGTAGCAGCAGTAGCAACAA------------------------CAACAGCA------A------------CATCAACAACAGCAGCAGCAGTA------------------------ATTCCA-GCAAC---AA------CAACAACAACAAT-AGCAGCAGCAACA---------AC---------AGCA------GTAGTAGCAGCCA---------------------CA------AC---AATA-CAC-CA
droKik1	scf7180000302698:119989-120152 +		GCAACAGCAA---CACCAGCAGCAACATCAACAACAACATCAACAACAACTTCAACAGCAACTTCAACAA------------------------CAGCAGCA------AATTCAA------CAACAGCAGAAAAATCAAC------------------------------AACA-GCAGCAACATCAACAAGAG------CAACT-TCAACAACAGCA---------AC---------TTCA------ACAAC------------------------------A------GC---AGCA-ACA-TC
droFic1	scf7180000453833:145246-145403 +		GCGACAACAT---CAGCAACATCTACAGCGGCAATAGCAACAGCAGCAGCGGCAGCAACAGCACCGGCAG------------------------CAACAGCA------G------------CAGCACCGGCAGCAGCAACAA----------------------------------C------AACAACAAGAG------CAAT-AGCAACAGCAATA---------CC---------ACCT------GCAACAGCAGCAA---------------------CA------CC---AGCA-CCA-CC
droEle1	scf7180000491273:2055501-2055668 +		GCAACAGCAG---CAACAGCAACAGCAACAGCAATCGCGTTATCAACAGCGACC--AGTAGT-GGCCGGTTATGGCCTGCAACGTCCCATGCATCCGCA---------C------------TACCAACAGCAACAGCAACAGCA------------------------GCAGCA-------------------G---------C-AACAGCAGGCAC---------------------ACCA------GCAACATCAGCAG---------------------CACCAGCAA---------CTA-CC
droRho1	scf7180000760202:71922-72098 +		GCAGCAACAA---CAACAGCAGCAGCAACAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAG------------------------CAACAGCA------A------------CAACAACAACAGCAGCAACAGCA------------------------ACAACAA-C------A----------------------ACAGCAGCTGCAACAACA---ACATCAGGTCTTGGC------ACAGCAACAACCTCA--------------------G-CCTGGACAACAAGT-CATCAC
droBia1	scf7180000298389:1471523-1471704 -		GCAGCAACAA---CAACAGCAGAAGCAGAAGGAGCAGCAGCAACCACAACAGCGGCAACACCAGCAGCAGCAACAGCAGAAA------------CAACAGCA---ACATCAGCCA------CAGCAGCAGCAATAGCAAC------------------------------AA----A------AGCAACAAAAG------CAAC-AACAGCAGCAACAGCAGCAACAAC---------A---------GCAGCAACAG------------------------CA------CC---AGCA-ACA-AC
droTak1	scf7180000415769:659445-659615 -		GCAAGTTCAG---CAGCAACAGCAACAGCATCACCATGTACAAACCACCCAGATTCAGCACATTCAAGTGCAATCTGCACC------------------GCC------C------------CCGCAACAACAGCAGCAGCAGCA------------------------ACAACA-GC------AGCA------G---------C-AACAGCAGCAGCAGCAGCAATCCC---------A---------GCAGCAACAGACGAC--------------------G------CC---TGTA-CAG-AC
droEug1	scf7180000409631:95126-95277 +		ACAACAACAA---CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA------------------------CAACAACA------A------------CAACAACAACAACAACAACAACA------------------------ACAACAA-C------A----------------------ACAACAACAACA------ACAAC---------A---------ACAACAACAACAA---------------------------CAAC---AACA-CAC-AC
dm3	chr3R:14866559-14866726 +		GCAGCAACTG---GAAAAACAGCAACAGCAGCAGCAACAGCAGCAGCAACAACATCACCAACAGCAACAC------------------------CAACAACA------A------------CACCAACAGCAACAACATCAGCA------------------------ACACCAA-C------AGCAACATATA------CAAC-AACAACATCAACA---------CC---------AGCA------GCAACATCAGCCACT--------------------A------CC---GCCA-ACT-CT
droSim2	3l:8237021-8237188 -		GCATCAACAA---CAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACATCAGCAGAATATGCATCACCATCAACATCAGCAGCAACACAT---------------------GCAGCAGCAGCAGCA------------AC------AACAACA---------------A---C----------AT------CAG------CAGC-AGCAGCAGCAACAACAACAACATC---------A---------GCAGCAGCAA------------------------CA---CCAA---------CAG-CA
droSec2	scaffold_0:726873-727039 -		GCATCAACAA---CAACAGCAGCAGCAGCAGCAGCAGCAACAACATCAGCAGAA---TATGCATCACCATCAACATCAGCAGCAACACAT---------------------GCAG------CAGCA------------AC------AACAACAACATCAGCAGCAGCAACACCA--------------------------------ACAGCAGCAACAACAGCAACATC---------A---------GCAGCAACAA------------------------------CAA------CA-GCA-TC
droYak3	3R:18798182-18798352 +		GCAGCAGCAA---CAGCAGCAACAGCAGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCAACATCAGCA---------------------------A------------CAACAGCAACAACAGCAGCAGCA------------------------ACAGCAA-C------AACA------GCAAAAGCAGC-AACAGCAGCAACA---------AC---------AGCA------GCAACAGCAGCAACA--------------------A------CA---GCAA-CAG-CA
droEre2	scaffold_4784:3586587-3586754 +		GCAGCATCAA---CAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAACAACAG------------------------CAACAGCA------G------------CAGCAGCAACAGCAGCAGCATCA------------------------ACAGCAA-C------AGCA------G---------C-AACAGCAACAGCA---------GCAGCAGTTGCAGCC------ACAACAGCAGCTGCA--------------------G-CCGCAA---------CAG-CA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GCAACAACAA---CAACAGCAACAGCAGCAATAATAGCA-CAACAACAACTGAGGTGGCC-TGTTCGTGACAACCGCCAAA------------------GCC------A------------CCAGGACAACAGCAGCAGCAGCAACAACAACA---------------A-------C------AC------CAACAACAGCAAC-AACAACAGTTATC---------AC---------AACA------GCAACATCAGCCACC--------------------A------CC---GGCA-CCG-CC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................CCAGGACAACAGCAGCAGCA.....................................................................................................................................................................	20	1	1.00	1	1	0
GCAACAACAA---CAACAGCAAC...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0

droVir3

GCAGCAACAG---CAACAACACCAGCAGCAACAGCAGCAGCAACAGCAACAAGAGCAGCAGCAACAACAG------------------------CAGCAGCAACA---C------------CAGTACCAACAGCAGCATCAGCA------------------------ACAGCA-------------------A---------C-AACAGCAAATACAGCAGCAGCAAC------------------------AACAGCTCGAGGGACTCCAGCATCAGCCAAA------TC---AGCCGCCTGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................TACCAACAGCAGCATCAGCA------------------------..........................................................................................................................................	20	11	0.27	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCAAC------------------------AACAGCTCGAGGGACTCCAGC................................	26	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGCAGCATCAGCA------------------------ACAGCA-------------------.................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCAGCATCAGCA------------------------ACAGCA-------------------A---------C-A....................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CAAGAGCAGCAGCAACAACAG------------------------CAG.................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CAGCAACAGCAACAAGAGCAG........................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CA------------------------ACAGCA-------------------A---------C-AACAGCAAATACAGCA.....................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................C------------CAGTACCAACAGCAGCATCAG....................................................................................................................................................................	22	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AC------------------------AACAGCTCGAGGGACTCC...................................	20	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................C------------CAGTACCAACAGCAGCATCAGCA------------------------ACA.......................................................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................C------------CAGTACCAACAGCAGCATCAGCA------------------------ATT.......................................................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CAGCAGCAACA---C------------CAGTACCAA................................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................A-------------------A---------C-AACAGCAAATACAGCAGCAG.................................................................................	23	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................C------------CAGTACCAACAGCAGCATCAGCA------------------------A.........................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................A---C------------CAGTACCAACAGCAGCATC......................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AAC------------------------AACAGCTCGAGGGACTCCAGC................................	24	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................AACAGCAAATACAGCAGCAGC................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAGCTCGAGGGACTCCAGCATCAGC..........................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CGAGGGACTCCAGCATCAGCC.........................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AC------------------------AACAGCTCGAGGGACTCCA..................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ACCAACAGCAGCATCAGCA------------------------ACAGCA-------------------A---------C-.....................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AAC------------------------AACAGCTCGAGGGACTCC...................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACAGCAGCAGCAACAGCAACAAGAG...........................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAAATACAGCAGCAGCAAC------------------------AACAGCT..............................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CAAC------------------------AACAGCTCGAGGGACT.....................................	20	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCAAC------------------------AACAGCTCGAGGGA.......................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................C------------------------AACAGCTCGAGGGACTCCAG.................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAGCAAATACAGCAGCAGCAAC------------------------.....................................................	22	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CTCGAGGGACTCCAGCATCAGCCA........................	24	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CAGCATCAGCA------------------------ACAGCA-------------------A---------C-AACAG................................................................................................	24	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CAGCATCAGCA------------------------ACAGCA-------------------A---------C-AACAGC...............................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CAAGAGCAGCAGCAACAACAG------------------------....................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ACAGCAACAAGAGCAGCAGCAACA................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CAACAGCAACAAGAGCAGCAG.....................................................................................................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATACAGCAGCAGCAAC------------------------AACAGTC..............................................	23	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CAACAACACCAGCAGCAACA.................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CAACAGCAGCATCAGCA------------------------ACAGCA-------------------.................................................................................................................	23	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CAACACCAGCAGCAACAGCA..............................................................................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................ATCAGCA------------------------ACAGCA-------------------A---------C-AACAGC...............................................................................................	21	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAGCAGCATCAGCA------------------------ACAGCA-------------------A---------C-A....................................................................................................	23	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAGCAACAG---CAACAACACC...........................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AGCAGCAACAGCAGCAGCAACAG....................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CAGCATCAGCA------------------------ACAGCA-------------------A---------C-A....................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AG---CAACAACACCAGCAGC.....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GCAGCAGCAACAACAG------------------------CAGCA...............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCAGCAACAGCAGCAGCAACA.....................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AGCAGCAACAACAG------------------------CAGCA...............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGCAGCAGCAACAACAG------------------------CAGCAGCAACA---......................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GCAGCAGCAACAACAG------------------------CAG.................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AGCAGCAACAACAG------------------------CAGCAGCA............................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAGCAGCATCAGCA------------------------ACAGCA-------------------A---------T-.....................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCAACAGCAGCAGCAACAGC...................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................CAACAGCAGCAGCAACAGCA..................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACCAGCAGCAACAGCAGCAGCA........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACAGCAGCAGCAACAGCAACA...............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AACAAGAGCAGCAGCAACAA...............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCAGCAACAGCAGCAGCAACAGCAAC................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CAACAAGAGCAGCAGCAACA................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................CATCAGCA------------------------ACAGCA-------------------A---------C-AAC..................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACAGCAGCAGCAAC------------------------AACAGC...............................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AACAGCAGCAGCAACAGCAA.................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGCAGCAGCAACAACAG------------------------CAGCA...............................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................AACAACAG------------------------CAGCAGCAACA---......................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGCAGCAGCAACAACAG------------------------CAGCAGC.............................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AACAAGAGCAGCAGCAACAAC..............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAACAGAAG---CAACAGCAACAGCAGCAACAGAAGCAACAGCAACAGCAGAAGCAACAGCAGAGAGAA------------------------CAGCAGCA------ACTGCAA------CAGCAGCAACAGCAGCAAC------------------------------AACA-GCAGC---AA------CTGCAACAGCAGC-AACAACAGCAGCA---------AC---------TGCA------ACAGCAGCAACAA---------------------CA------TC---AGCA-ACA-GC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................AA------CTGCAACAGCAGC-AACAACAGCAGC.........................................................................................	27	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................CAGCAGCAAC------------------------------AACA-GCAGC---...........................................................................................................................	19	20	0.20	4	0	0	0	0	4	0
.....................................................................................................A------ACTGCAA------CAGCAGCAACAG.............................................................................................................................................................................	20	9	0.11	1	0	0	0	0	1	0
..................................................................................................................................................................................................CAACAGCAGC-AACAACAGC............................................................................................	19	20	0.10	2	0	0	0	0	2	0
................................................................................................................................................................................................................AACAGCAGCA---------AC---------TGCA------ACAGCA....................................................	22	11	0.09	1	1	0	0	0	0	0
..........................................................................................................................................................................AACA-GCAGC---AA------CTGCAACAGCA........................................................................................................	22	11	0.09	1	1	0	0	0	0	0
....................................................................AA------------------------CAGCAGCA------ACTGCAA------CAGCA....................................................................................................................................................................................	22	11	0.09	1	1	0	0	0	0	0
....................................................................................................................................................................................................ACAGCAGC-AACAACAGCAGCA---------...............................................................................	21	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................AACAGCAGC-AACAACAGCAG..........................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................CAGCAGCAACAGCAGCAAC------------------------------AAC.....................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................ACAGCAGCAAC------------------------------AACA-GCAGC---AA------C..................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................GCAGCAACAGCAGCAAC------------------------------AACA-GCA................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................C---------TGCA------ACAGCAGCAACAA---------------------CC------................	20	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................CTGCAACAGCAGC-AACAACC..............................................................................................	20	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................AGCAACAGCAGCAAC------------------------------AAC.....................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................ACAGCAGC-AACAACAGCAGCA---------AC---------....................................................................	23	20	0.05	1	0	0	0	0	1	0

droWil2

GCAACAATAT---CAACAGCAACAGCAACAATATCAACAGCAACAGCAACAATATCAACAGCAACAGCAACAACAGCAGCAGCAACAGGA---------------------ACAACTGCAGCAGCA---ACAATATCAACAGCA------------------------ACAGCAA-C------AACAGCAGGAG------CAACA-ATATCAACAGCA---------AC---------AGCA------ACAACAGCAGCAG---------------------CA------AC---AGCA-ACA-AC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AA.........................................................................................................................	23	20	0.60	12	0	12	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAA......................................................	23	20	0.60	12	0	12	0	0	0
.....AATAT---CAACAGCAACAGCAACAA...................................................................................................................................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
.............................AATATCAACAGCAACAGCAACAA..............................................................................................................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
..................................................AATATCAACAGCAACAGCAACAA.........................................................................................................................................................................................................................................	23	20	0.60	12	0	12	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------A..........................................................................................................................	22	20	0.45	9	0	9	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACA.......................................................	22	20	0.45	9	0	9	0	0	0
..................................................AATATCAACAGCAACAGCAACAACAGC.....................................................................................................................................................................................................................................	27	20	0.25	5	0	5	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAACAGC..................................................	27	20	0.25	5	0	5	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AAC........................................................................................................................	24	20	0.25	5	0	5	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAAC.....................................................	24	20	0.25	5	0	5	0	0	0
.................................TCAACAGCAACAGCAACAATATCAA........................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
..................................................AATATCAACAGCAACAGCAACAAC........................................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0
.........T---CAACAGCAACAGCAACAATATCAA.............................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AACAGC.....................................................................................................................	27	20	0.25	5	0	5	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAACAG...................................................	26	20	0.20	4	0	3	0	1	0
..................................................AATATCAACAGCAACAGCAACAACAG......................................................................................................................................................................................................................................	26	20	0.20	4	0	3	0	1	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AACAG......................................................................................................................	26	20	0.20	4	0	3	0	1	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAACA....................................................	25	20	0.15	3	0	3	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AACA.......................................................................................................................	25	20	0.15	3	0	3	0	0	0
.................AGCAACAGCAACAATATCAACAGCA........................................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0
......................................AGCAACAGCAACAATATCAACAGCA...................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAACAGCAG................................................	29	19	0.11	2	0	2	0	0	0
..................................................AATATCAACAGCAACAGCAACAACAGCAG...................................................................................................................................................................................................................................	29	19	0.11	2	0	2	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AACAGCAG...................................................................................................................	29	19	0.11	2	0	2	0	0	0
.........................................................................................................................................................................................................AACA-ATATCAACAGCA---------AC---------AGCA------A.........................................................	23	20	0.10	2	0	1	0	1	0
.............................................................................................................................A---ACAATATCAACAGCA------------------------ACAGCAA-..................................................................................................................................	23	20	0.10	2	0	1	0	1	0
..........................AACAATATCAACAGCAACAGCAA.................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	1	0
.....................................................ATCAACAGCAACAGCAACAACAGCA....................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................AACA-ATATCAACAGCA---------AC---------AGCA------ACA.......................................................	25	20	0.10	2	0	2	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AACAGCA....................................................................................................................	28	20	0.10	2	0	2	0	0	0
..AACAATAT---CAACAGCAACAGCAA......................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	1	0
.....AATAT---CAACAGCAACAGCAAC.....................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
..................................................AATATCAACAGCAACAGCAACAACAGCA....................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0
.............................AATATCAACAGCAACAGCAAC................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
.............................................................................................................................A---ACAATATCAACAGCA------------------------ACAGCAA-C------A..........................................................................................................................	25	20	0.10	2	0	2	0	0	0
..................................................AATATCAACAGCAACAGCAAC...........................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
......................................................................................................................................ATCAACAGCA------------------------ACAGCAA-C------AACAGCA....................................................................................................................	25	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAACAGCA.................................................	28	20	0.10	2	0	2	0	0	0
...............................................AACAATATCAACAGCAACAGCAA............................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	1	0
.....................................................ATCAACAGCAACAGCAACAACAG......................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
................CAGCAACAGCAACAATATC...............................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------AC........................................................	21	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................................................ATCAACAGCA---------AC---------AGCA------ACAACAGCA.................................................	25	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................................................ATCAACAGCA---------AC---------AGCA------ACAACAG...................................................	23	20	0.10	2	0	2	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------...........................................................................................................................	21	20	0.10	2	0	2	0	0	0
.....................................CAGCAACAGCAACAATATC..........................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0
.........................................AACAGCAACAATATCAACAGC....................................................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0
....................AACAGCAACAATATCAACAGC.........................................................................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0
......................................................................................................................CAGCAGCA---ACAATATCAACAGCA------------------------A.........................................................................................................................................	24	18	0.06	1	0	1	0	0	0
.....................................................ATCAACAGCAACAGCAACAACAGCAGCAG................................................................................................................................................................................................................................	29	18	0.06	1	0	1	0	0	0
................................................................................................................................................................................................................ATCAACAGCA---------AC---------AGCA------ACAACAGCAGCAG---------------------........................	29	18	0.06	1	0	1	0	0	0
.....................................................................................................................................TATCAACAGCA------------------------ACAGCAA-C------AACAGCAG...................................................................................................................	27	19	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................TATCAACAGCA---------AC---------AGCA------ACAACAGCAG................................................	27	19	0.05	1	0	1	0	0	0
.......................................................................................................................AGCAGCA---ACAATATCAACAG....................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0
....................................................TATCAACAGCAACAGCAACAACAGCAG...................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0
...............................................AACAATATCAACAGCAACAGCA.............................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................CAGCA---------AC---------AGCA------ACAACAGCAGCAG---------------------C.......................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................A---ACAATATCAACAGCA------------------------ACAGCA....................................................................................................................................	22	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAT......................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................CAGCA---ACAATATCAACAGCA------------------------ACAGC.....................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................AACA-ATATCAACAGCA---------AC---------AGCA------..........................................................	22	20	0.05	1	0	1	0	0	0
..................................................AATATCAACAGCAACAGCAACAACAGTT....................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................TATCAACAGCA---------AC---------AGCA------ACAACA....................................................	23	20	0.05	1	0	1	0	0	0
..........................AACAATATCAACAGCAACAGCAACAA..............................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.........................CAACAATATCAACAGCAACAGCAACAA..............................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................ATATCAACAGCA---------AC---------AGCA------ACAACAGC..................................................	26	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................CAACAGCA---------AC---------AGCA------ACAACAGCAGCAG---------------------CA------................	29	20	0.05	1	0	0	1	0	0
................................................................................................................................................................................................................ATCAACAGCA---------AC---------AGCA------ACAACA....................................................	22	20	0.05	1	0	1	0	0	0
...........................................CAGCAACAATATCAACAGCAACAGC..............................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................A---ACAATATCAACAGCA------------------------ACAGCAA-C------AA.........................................................................................................................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................CA---ACAATATCAACAGCA------------------------ACAGCAA-C------AA.........................................................................................................................	27	20	0.05	1	0	1	0	0	0
................................................ACAATATCAACAGCAACAGCAACA..........................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................AGCA---------AC---------AGCA------ACAACAGCAGCAG---------------------CA------AA---...........	27	20	0.05	1	0	1	0	0	0
..........................AACAATATCAACAGCAACAGCA..................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.CAACAATAT---CAACAGCAACAGCAACAA...................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.................................................................AGCAACAACAGCAGCAGCAAC............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................CAATATCAACAGCA------------------------ACAGCAA-C------AAC........................................................................................................................	25	20	0.05	1	0	1	0	0	0
...............................................AACAATATCAACAGCAACAGCAACAA.........................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................A---------AC---------AGCA------ACAACAGCAGCAG---------------------CA------A...............	23	20	0.05	1	0	1	0	0	0
....................................................TATCAACAGCAACAGCAACAACA.......................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..AACAATAT---CAACAGCAACAGCA.......................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................AACAGCAGCAG---------------------CA------AC---AGCA-......	19	20	0.05	1	0	0	0	0	1
.........................................................................................................................................................................................................AACA-ATATCAACAGCA---------AC---------AGCA------AC........................................................	24	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................CAACA-ATATCAACAGCA---------AC---------AGCA------A.........................................................	24	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................CAGCAGCAG---------------------CA------AC---AGCA-ACA-A.	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................ATCAACAGCA------------------------ACAGCAA-C------AACA.......................................................................................................................	22	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................CAACA-ATATCAACAGCA---------AC---------AGCA------ACAA......................................................	27	20	0.05	1	0	1	0	0	0
...................................................ATATCAACAGCAACAGCAACAAC........................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................................CAGCAACAGCAACAACAGCAGCAGCAA.............................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................A---------AC---------AGCA------ACAACAGCAGCAG---------------------CA------................	22	20	0.05	1	0	1	0	0	0
..............................................................AACAGCAACAACAGCAGCAGCAA.............................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................CAGCA---------AC---------AGCA------ACAACAGCAGCAG---------------------CA------A...............	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................A---ACAATATCAACAGCA------------------------ACAGCAA-C------...........................................................................................................................	24	20	0.05	1	0	1	0	0	0
..............................................CAACAATATCAACAGCAACAGCAACAA.........................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
............................................................................................................................CA---ACAATATCAACAGCA------------------------ACAGCAA-..................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................AATATCAACAGCA------------------------ACAGCAA-C------AACAGTT....................................................................................................................	28	20	0.05	1	0	1	0	0	0
...................................................ATATCAACAGCAACAGCAACAACAGC.....................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................ATATCAACAGCA---------AC---------AGCA------ACAAC.....................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................TATCAACAGCA------------------------ACAGCAA-C------AACAGC.....................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................AACAGCAACAACAGCAGCAGCA..............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................TATCAACAGCA---------AC---------AGCA------ACAACAGC..................................................	25	20	0.05	1	0	1	0	0	0
...............................................................ACAGCAACAACAGCAGCAG................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
...........................ACAATATCAACAGCAACAGCAACA...............................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................CAGCAACAGCAACAACAGCAGCAGC...............................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.....................................................ATCAACAGCAACAGCAACAACA.......................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................AACA-ATATCAACAGCA---------AC---------AGCA------ACAA......................................................	26	20	0.05	1	0	1	0	0	0
.................................................CAATATCAACAGCAACAGCAACAAC........................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................A-ATATCAACAGCA---------AC---------AGCA------ACAACAGTT.................................................	28	20	0.05	1	0	1	0	0	0
.....................................................................................................................................TATCAACAGCA------------------------ACAGCAA-C------AACA.......................................................................................................................	23	20	0.05	1	0	1	0	0	0
...ACAATAT---CAACAGCAACAGCAACA....................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...........................................................AGCAACAGCAACAACAGCAGCAGCAAA............................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
....................................................TATCAACAGCAACAGCAACAACAGC.....................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................ATATCAACAGCA------------------------ACAGCAA-C------AACAGC.....................................................................................................................	26	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................AC---------AGCA------ACAACAGCAGCAG---------------------........................	19	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................CA-ATATCAACAGCA---------AC---------AGCA------ACAAC.....................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................ATATCAACAGCA------------------------ACAGCAA-C------AAC........................................................................................................................	23	20	0.05	1	0	1	0	0	0
..AACAATAT---CAACAGCAACAGCAACAA...................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................AGCA------ACAACAGCAGCAG---------------------CA------AC---...........	21	20	0.05	1	0	0	0	1	0
......................CAGCAACAATATCAACAGCAACAGC...................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.......................................................CAACAGCAACAGCAACAACAGCAGCAGCA..............................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0

dp5

GCAGCAGCAGGTACAGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAACTGCAGCAGCAGCAACTGCA---------------------------GCAGCA------G------------CAACAGCAGCAACAGCAGCAGCA------------------------ACATCA-------------GCAGCAG------CAACA-TCAGCAACAGCA---------AC---------AGCAACAACAGCAGCTGCAGCCCCC--------------------A------CC---AAGA-CCC-CC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................GCAGCAGCAACTGCAGCAGC.......................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAGCAACAGCA---------AC---------AGCAACAACAGCAGC.....................................................	28	4	0.25	1	0	0	0	1	0	0	0	0	0	0
......................................................GCAGCAGCAACTGCA---------------------------GCAGC.............................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................ACATCA-------------GCAGCAG------CAACA-TCT.................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..........................AGCAACAACAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................GCAGCAACAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................CAACAGCAGCAACAGCAGCA.....................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCAGCAACAGCA---------AC---------AGCAACA.............................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..........................AGCAACAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAACAGCA---------AC---------AGCAACAACAGC........................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................A---------------------------GCAGCA------G------------CAACAGCAGCAA.............................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................ACAACAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0	0	0	0
............................CAACAACAGCAGCAGCAGCAAC................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
................................................................................................GCAGCA------G------------CAACAGCAGCAAC............................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...........................GCAACAACAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................GCAGCAACAGCAGCAGCA------------------------ACA.......................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................ACAGCAGCAACAACAGCAGC.........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................CAACAGCAGCAACAACAGCAGCA........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................A------G------------CAACAGCAGCAACAGCAG.......................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................A---------------------------GCAGCA------G------------CAACAGCAGCAACAGCAGCA.....................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................AGCA------G------------CAACAGCAGCAACA...........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................ACAGCAGCAACAACAGCAG..........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GCAGCA------G------------CAACAGCAGCAACAGC.........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCAACATCAG---CAGCAACAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATCAG------------------------CAACAGCA------A------------CATCAGCAGCAACAGCAGCAGCA------------------------GCAACAA-C------AGCAGCAGCAG------CAACA-TCAGCAACAGCA---------AC---------AGCAACAACAGCAGCTGCAGCCCCC--------------------C------CC---AAGA-CCC-CC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................ATCAGCAGCAACAGCAGCAGCA------------------------GC........................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
.............................................................................................................................AGCAGCAACAGCAGCAGCA------------------------GC........................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
...........................................CAACAACAGCAGCAGCAGCAA..................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................................................GCAACAA-C------AGCAGCAGCAG------CAACA-....................................................................................................	24	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................AACAGCAGCAGCA------------------------GCAACA....................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..................ACAGCAGCAGCAACAGCAGCA...........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
..........................................GCAACAACAGCAGCAGCAGC....................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................GCAGCAGCA------------------------GCAACAA-C------AGCAGCA....................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.................................GCAGCAGCAGCAACAACAGCAGCA.........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.........................CAGCAACAGCAGCAGCAGCAACA..................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................CAACAA-C------AGCAGCAGCAG------CAA.......................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.........G---CAGCAACAGCAGCAGCAACAGCAGCA...........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0
..........................................GCAACAACAGCAGCAGCAGCAACA................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.........................................AGCAACAACAGCAGCAGCAGC....................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
................................................................................................................................AGCAACAGCAGCAGCA------------------------GCAA......................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................A------------------------GCAACAA-C------AGCAGCAGCAG------C.........................................................................................................	21	20	0.05	1	0	0	1	0	0	0

droAna3

GCAACATCAG---CAGCAGCAGCAGCAGCAATATCAGCAGCATCAGCAACTACTGTCGCAGCAGCAGCAGCTCTTG------------------TCGCAGCA------A------------CAACAGCAGCAGCAGCAGCAGCA------------------------ATACCA-GC------AGCCG---CAGCAG---CATC----AGCAGCATCA---------CT---------TCCA------GCAGCAACAGCAGCA--------------------G------CA---GCCG-CCG-CT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................GCAG---CATC----AGCAGCATCA---------CT---------TCCA------GC........................................................	26	1	2.00	2	1	1	0	0	0	0
........................................................................CTTG------------------TCGCAGCA------A------------CAACAGCAGCA..............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..................GCAGCAGCAGCAATATCAGCAGC.........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................CAGCAGCAGCTCTTG------------------TCGCAGCA------A------------C........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................AATATCAGCAGCATCAGCAACTACT............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................A-GC------AGCCG---CAGCAG---CATC----AGCAGCATCA---------C..............................................................................	29	1	1.00	1	0	0	0	0	0	1
..................................................................GCAGCTCTTG------------------TCGCAGCA------A------------C........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................ATC----AGCAGCATCA---------CT---------TCCA------GCAGCAAC..................................................	27	1	1.00	1	0	1	0	0	0	0
.........................................................GCAGCAGCAGCAGCTCTTG------------------TCGC................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................ATC----AGCAGCATCA---------CT---------TCCA------GCA.......................................................	22	1	1.00	1	1	0	0	0	0	0
...............................TATCAGCAGCATCAGCAAC................................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0
.....................................................................................................A------A------------CAACAGCAGCAGCAGCA........................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	4
.............................................................................................................................................................................................................................................................AACAGCAGCA--------------------G------CA---GCCG-CCG-..	20	5	0.20	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................ACAGCAGCA--------------------G------CA---GCCG-CCG-C.	20	5	0.20	1	0	1	0	0	0	0
...................................................................................................GCA------A------------CAACAGCAGCAGCAGC.........................................................................................................................................................................	20	20	0.15	3	0	2	0	0	1	0
.........................................................................................................................CAACAGCAGCAGCAGCAGC......................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................A------GCAGCAACAGCAGCA--------------------G------CA---GC.........	21	20	0.15	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................GCAGCAACAGCAGCA--------------------G------CA---GCC........	21	16	0.13	2	0	1	1	0	0	0
............................................................................................................A------------CAACAGCAGCAGCAGCAGC......................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
.....................................................................................................A------A------------CAACAGCAGCAGCAGCAGCAGC...................................................................................................................................................................	24	20	0.10	2	0	1	1	0	0	0
...................................................................................................GCA------A------------CAACAGCAGCAGCAGCAGC......................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
..................................................................................................AGCA------A------------CAACAGCAGCAGCAGCAGCAGC...................................................................................................................................................................	27	11	0.09	1	0	1	0	0	0	0
....CATCAG---CAGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................AACAGCAGCAGCAGCAGCAGCA------------------------..........................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
....................................................................................................CA------A------------CAACAGCAGCAGCAGCAGC......................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................ACAGCAGCAGCAGCAGCAGCA------------------------..........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................AGCAACAGCAGCA--------------------G------CA---GCC........	19	20	0.05	1	0	0	0	0	0	1
..................................................................................................AGCA------A------------CAACAGCAGCAGCAGCAGCA.....................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
..................................................................................................AGCA------A------------CAACAGCAGCAGCAGCAGC......................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.................................................................................................CAGCA------A------------CAACAGCAGCAGCAGCAGCA.....................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
GCAACATCAG---CAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................GCAGCAACAGCAGCA--------------------G------CA---GC.........	20	20	0.05	1	1	0	0	0	0	0
................................................................................................GCAGCA------A------------CAACAGCAGCAGCA...........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.....ATCAG---CAGCAGCAGCAGCAG......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
................................................................................................GCAGCA------A------------CAACAGCAGCAGCAGCA........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................AACAGCAGCAGCAGCAGCAGC...................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
................................................................................................GCAGCA------A------------CAACAGCAGCAGC............................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

ACAACAACAA---CAACAACAACAGCAGCAGTAGTAGCAACAACAACAGTAGTAGCAGCAGTAGCAACAA------------------------CAACAGCA------A------------CATCAACAACAGCAGCAGCAGTA------------------------ATTCCA-GCAAC---AA------CAACAACAACAAT-AGCAGCAGCAACA---------AC---------AGCA------GTAGTAGCAGCCA---------------------CA------AC---AATA-CAC-CA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAACAGCAA---CACCAGCAGCAACATCAACAACAACATCAACAACAACTTCAACAGCAACTTCAACAA------------------------CAGCAGCA------AATTCAA------CAACAGCAGAAAAATCAAC------------------------------AACA-GCAGCAACATCAACAAGAG------CAACT-TCAACAACAGCA---------AC---------TTCA------ACAAC------------------------------A------GC---AGCA-ACA-TC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCGACAACAT---CAGCAACATCTACAGCGGCAATAGCAACAGCAGCAGCGGCAGCAACAGCACCGGCAG------------------------CAACAGCA------G------------CAGCACCGGCAGCAGCAACAA----------------------------------C------AACAACAAGAG------CAAT-AGCAACAGCAATA---------CC---------ACCT------GCAACAGCAGCAA---------------------CA------CC---AGCA-CCA-CC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAACAGCAG---CAACAGCAACAGCAACAGCAATCGCGTTATCAACAGCGACC--AGTAGT-GGCCGGTTATGGCCTGCAACGTCCCATGCATCCGCA---------C------------TACCAACAGCAACAGCAACAGCA------------------------GCAGCA-------------------G---------C-AACAGCAGGCAC---------------------ACCA------GCAACATCAGCAG---------------------CACCAGCAA---------CTA-CC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAGCAACAA---CAACAGCAGCAGCAACAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAG------------------------CAACAGCA------A------------CAACAACAACAGCAGCAACAGCA------------------------ACAACAA-C------A----------------------ACAGCAGCTGCAACAACA---ACATCAGGTCTTGGC------ACAGCAACAACCTCA--------------------G-CCTGGACAACAAGT-CATCAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGCAACAA---CAACAGCAGAAGCAGAAGGAGCAGCAGCAACCACAACAGCGGCAACACCAGCAGCAGCAACAGCAGAAA------------CAACAGCA---ACATCAGCCA------CAGCAGCAGCAATAGCAAC------------------------------AA----A------AGCAACAAAAG------CAAC-AACAGCAGCAACAGCAGCAACAAC---------A---------GCAGCAACAG------------------------CA------CC---AGCA-ACA-AC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAAGTTCAG---CAGCAACAGCAACAGCATCACCATGTACAAACCACCCAGATTCAGCACATTCAAGTGCAATCTGCACC------------------GCC------C------------CCGCAACAACAGCAGCAGCAGCA------------------------ACAACA-GC------AGCA------G---------C-AACAGCAGCAGCAGCAGCAATCCC---------A---------GCAGCAACAGACGAC--------------------G------CC---TGTA-CAG-AC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACAACAACAA---CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA------------------------CAACAACA------A------------CAACAACAACAACAACAACAACA------------------------ACAACAA-C------A----------------------ACAACAACAACA------ACAAC---------A---------ACAACAACAACAA---------------------------CAAC---AACA-CAC-AC	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCAGCAACTG---GAAAAACAGCAACAGCAGCAGCAACAGCAGCAGCAACAACATCACCAACAGCAACAC------------------------CAACAACA------A------------CACCAACAGCAACAACATCAGCA------------------------ACACCAA-C------AGCAACATATA------CAAC-AACAACATCAACA---------CC---------AGCA------GCAACATCAGCCACT--------------------A------CC---GCCA-ACT-CT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..AGCAACTG---GAAAAACAGCA..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ACAACATCAACA---------CC---------AGCA------GC........................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CACCAACAGCAACAACATCA.....................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................AGCAGCAACAGCAGCAGCA..................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AACAGCAGCAGCAACAGCA........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................CAGCAACAGCAGCAGCAACA...............................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................AACAGCAACAGCAGCAGCAAC............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AACAGCAGCAGCAACAGCAGCA.....................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCATCAACAA---CAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACATCAGCAGAATATGCATCACCATCAACATCAGCAGCAACACAT---------------------GCAGCAGCAGCAGCA------------AC------AACAACA---------------A---C----------AT------CAG------CAGC-AGCAGCAGCAACAACAACAACATC---------A---------GCAGCAGCAA------------------------CA---CCAA---------CAG-CA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................CAGCAACACAT---------------------GCAGCAGCAGC........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................AGAATATGCATCACCATCAACAT......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AGCAGCAACACAT---------------------GCAGCAGCA..........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................AGCAACAACAACAACATC---------A---------GCA.......................................................	22	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AGCA------------AC------AACAACA---------------A---C----------AT------CAG------CA........................................................................................................	22	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ACAACATC---------A---------GCAGCAG...................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................ACA---------------A---C----------AT------CAG------CAGC-AG...................................................................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................CAGCAACAACATCAGCA............................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GCATCAACAA---CAACAGCAGCAGCAGCAGCAGCAGCAACAACATCAGCAGAA---TATGCATCACCATCAACATCAGCAGCAACACAT---------------------GCAG------CAGCA------------AC------AACAACAACATCAGCAGCAGCAACACCA--------------------------------ACAGCAGCAACAACAGCAACATC---------A---------GCAGCAACAA------------------------------CAA------CA-GCA-TC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................CAGCAGCAGCAACAACATCAGCAGA.............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.............................................................CATCACCATCAACATCAGCAG................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...............................................................................CAGCAACACAT---------------------GCAG------CAGCA------------........................................................................................................................................................................	20	3	0.33	1	0	0	1	0
..................................................................................................................G------CAGCA------------AC------AACAACAACATCA...................................................................................................................................................	21	3	0.33	1	0	0	1	0
.............................................................................................................................................................................A--------------------------------ACAGCAGCAACAACAGC...................................................................................	18	20	0.10	2	0	0	2	0
.................................................................................................................................................................AGCAGCAACACCA--------------------------------ACAGCAGC............................................................................................	21	12	0.08	1	0	0	0	1
.................................................................................................................................................................AGCAGCAACACCA--------------------------------ACAGCA..............................................................................................	19	18	0.06	1	0	0	0	1
...........................................................................................................................................................................CCA--------------------------------ACAGCAGCAACAACA.....................................................................................	18	18	0.06	1	0	0	1	0
.........A---CAACAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................GCAGCAACAA------------------------------CAA------CA-GCA-..	18	20	0.05	1	0	0	1	0
........AA---CAACAGCAGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0

droYak3

GCAGCAGCAA---CAGCAGCAACAGCAGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCAACATCAGCA---------------------------A------------CAACAGCAACAACAGCAGCAGCA------------------------ACAGCAA-C------AACA------GCAAAAGCAGC-AACAGCAGCAACA---------AC---------AGCA------GCAACAGCAGCAACA--------------------A------CA---GCAA-CAG-CA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................AAAGCAGC-AACAGCAGCAACA---------AC---------....................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................GCAACATCAGCA---------------------------A------------CAACAGCAACA..............................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................AGCAGCAACAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................CAACAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................AGCAGCAGCAGCAACAGCA.............................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AGCAGC-AACAGCAGCAACA---------AC---------AGCA------GC........................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
..........................AGCAGCAACAGCAGCAACAACAGCAGC.............................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...................CAACAGCAGCAGCAACAGCA...........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................AGCAGCAGCA------------------------ACAGCAA-C------AAC........................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................CAGCAGCAGCAGCAACAGCAGC...........................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...............................CAACAGCAGCAACAACAGCAGCA............................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACA---------AC---------AGCA------GCAACAGCAGCA..............................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................CAACAGCAGCAGCAGCAGCA...................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................C-AACAGCAGCAACA---------AC---------AGCA------GCA.......................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........AA---CAGCAGCAACAGCAGCA....................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................ACAGCAGCAGCAGCAGCAACAGCA.............................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................AGCAGCAGCAGCAGCAACAGCAGCAAC........................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
...................CAACAGCAGCAGCAACAGC............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................CAACAGCAACAACAGCAGCA.....................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................AACAGCAGCAACAACAGCAGCAGC..........................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................AGCAACAACAGCAGCAGCA------------------------ACAGC.....................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCAGCAACA---------AC---------AGCA------GCAACAGCA.................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................GCAACAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................GCAGCAGCAGCAACAGCAGCAACA.......................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................CAGCAGCAGCAGCAACAGCAGCAAC........................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
........................GCAGCAGCAACAGCAGCAAC......................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
GCAGCAGCAA---CAGCAGCAAC...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................CAGCAACAACAGCAGCAGCA------------------------ACAGC.....................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AACA---------AC---------AGCA------GCAACAGCAG................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................CAGCAGCAACAACAGCAGCA............................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AACA---------AC---------AGCA------GCAACAGCA.................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAGCAGCAACA---------AC---------AGCA------GCA.......................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCAACAACAGCAGCAGCA------------------------A.........................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................CAGCAACAACAGCAGCAGCA------------------------..........................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................AGCAGCAGCAGCAACAGCAGC...........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

GCAGCATCAA---CAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAACAACAG------------------------CAACAGCA------G------------CAGCAGCAACAGCAGCAGCATCA------------------------ACAGCAA-C------AGCA------G---------C-AACAGCAACAGCA---------GCAGCAGTTGCAGCC------ACAACAGCAGCTGCA--------------------G-CCGCAA---------CAG-CA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................C------ACAACAGCAGCTGCA--------------------G-CCGCA................	22	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................AACAGCAACAGCA---------GCAGCAGTT......................................................................	22	2	0.50	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................ACAGCAACAGCA---------GCAGCAGTT......................................................................	21	2	0.50	1	0	0	0	0	0	1	0
......................................................................................................................................AGCAGCATCA------------------------ACAGCAA-C------A..........................................................................................................................	19	3	0.33	1	0	0	0	0	1	0	0
GCAGCATCAA---CAGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0
..........................................GCAGCAACAGCAGCAGCAGC....................................................................................................................................................................................................................................................	20	20	0.15	3	1	0	0	0	0	2	0
......................................AACAGCAGCAACAGCAGCA.........................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0	0	0
..................................CAGCAACAGCAGCAACAGCAGCA.........................................................................................................................................................................................................................................................	23	20	0.10	2	1	0	0	0	1	0	0
.............................................................................................................................................................................................................AACAGCAACAGCA---------GCAGC..........................................................................	18	20	0.10	2	0	0	0	0	0	2	0
.........................................................GCAGCAACAACAG------------------------CAACAGCA------G------------CA.......................................................................................................................................................................................	24	12	0.08	1	0	0	0	0	0	1	0
....CATCAA---CAGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	1	0	0	0
...........................................................AGCAACAACAG------------------------CAACAGCA------G------------CA.......................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................AGCAACAGCA---------GCAGCAGT.......................................................................	18	19	0.05	1	1	0	0	0	0	0	0
............................................................GCAACAACAG------------------------CAACAGCA------G------------C........................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
........................GCAGCAACAGCAGCAACAGCAGCA..................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0
...................................AGCAACAGCAGCAACAGCAGCAGCAGC....................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0	0
...................................AGCAACAGCAGCAACAGCA............................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
..........................................................................................................................................................................AGCAA-C------AGCA------G---------C-AACAGCA..............................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
...............................................................ACAACAG------------------------CAACAGCA------G------------CAGC.....................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
................................................................................................ACAGCA------G------------CAGCAGCAACAGC............................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................CAACAGCA------G------------CAGCAGCAACAGCA...........................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................AACAGCA------G------------CAGCAGCAACAGCAGCA........................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0
.....ATCAA---CAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
..................GCAGCAGCAGCAACAGCA..............................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
................................AGCAGCAACAGCAGCAACAGCAGCAG........................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0
............................................................................................................G------------CAGCAGCAACAGCAGCAGCA.....................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
.............................................................CAACAACAG------------------------CAACAGCA------G------------CAG......................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
............................................AGCAACAGCAGCAGCAGCA...................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
....CATCAA---CAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................A-C------AGCA------G---------C-AACAGCAACAGC.........................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
....................AGCAGCAGCAACAGCAGCA...........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
............................................................................................................G------------CAGCAGCAACAGCAGCAGC......................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................AACAGCA------G------------CAGCAGCAACAGCAGC.........................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1	0
.............................................................CAACAACAG------------------------CAACAGCA------G------------CA.......................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
..............AGCAGCAGCAGCAGCAACAGCAGC............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0
..........................................GCAGCAACAGCAGCAGCAGCAA..................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0
.............................................GCAACAGCAGCAGCAGCAACA................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
...................................................................CAG------------------------CAACAGCA------G------------CAGCAGC..................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
.............................................................CAACAACAG------------------------CAACAGCA------G------------C........................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
.......................................ACAGCAGCAACAGCAGCA.........................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0
.........................CAGCAACAGCAGCAACAGCAGCA..................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0
.................................................................................................CAGCA------G------------CAGCAGCAACAGC............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
...........................................CAGCAACAGCAGCAGCAGCAAC.................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0
................................................................CAACAG------------------------CAACAGCA------G------------CAGCAGCA.................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0

-8.2	-8.2	-7.8	-7.8

dgr_359

scaffold_15112:2113335-2113409 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads