dgr_34

TATATACCCATATATATATATATATATATATCTATCTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTTATTCAAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTAAACGAAATGCAACAAAAGAAGTGATAAAAAGATAATAAAACT *********************************...((((((((((.((.((((((((.(((((..(((((((..(((((.....))))))))))))))))))))))))).)).))))))))))...************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
..................................................TAAAGTAAATAGTCTGGATTGATG.............................................................................................	24	0	1	326.00	326	257	69
..................................................TAAAGTAAATAGTCTGGATTGATGA............................................................................................	25	0	1	240.00	240	207	33
..................................................TAAAGTAAATAGTCTGGATTGAT..............................................................................................	23	0	1	110.00	110	64	46
..................................................TAAAGTAAATAGTCTGGATTGA...............................................................................................	22	0	1	56.00	56	30	26
..................................................TAAAGTAAATAGTCTGGATTGATGAA...........................................................................................	26	0	1	21.00	21	18	3
...................................................AAAGTAAATAGTCTGGATTGATG.............................................................................................	23	0	1	17.00	17	8	9
...................................................AAAGTAAATAGTCTGGATTGATGA............................................................................................	24	0	1	14.00	14	6	8
..................................................TGAAGTAAATAGTCTGGATTGATG.............................................................................................	24	1	1	8.00	8	7	1
..................................................TAAAGTAAATAGTCTGGATTG................................................................................................	21	0	1	5.00	5	4	1
..................................................TAAAGTAAATAGTCTGGATTGATGT............................................................................................	25	1	1	4.00	4	4	0
..................................................TAAAGTAAATAGTCTGGATTGAAG.............................................................................................	24	1	1	3.00	3	3	0
..................................................TAAAGTAAATAGTCTGGTTTGATGA............................................................................................	25	1	1	3.00	3	3	0
..................................................TACAGTAAATAGTCTGGATTGATGA............................................................................................	25	1	1	3.00	3	3	0
...................................................AAAGTAAATAGTCTGGATTGAT..............................................................................................	22	0	1	3.00	3	0	3
..................................................TAAAGTAAATAGTCTGGCTTGATG.............................................................................................	24	1	1	3.00	3	3	0
...................................................AAAGTAAATAGTCTGGATTGATGAAA..........................................................................................	26	0	1	2.00	2	2	0
..................................................TAAAGTAAGTAGTCTGGATTGATGA............................................................................................	25	1	1	2.00	2	2	0
..................................................TAAAGTAAATAGTCTGGATTGAAGA............................................................................................	25	1	1	2.00	2	2	0
..................................................TAAAGTAAATAGTCTGGATTGAC..............................................................................................	23	1	1	2.00	2	1	1
..................................................TAAAGTAACTAGTCTGGATTGATGA............................................................................................	25	1	1	2.00	2	2	0
..................................................TGAAGTAAATAGTCTGGATTGATGA............................................................................................	25	1	1	2.00	2	2	0
..................................................TAAAGTAAATAGTCTGGCTTGATGA............................................................................................	25	1	1	2.00	2	2	0
..................................................TAAAGTAAATAGTCTGGATTGATT.............................................................................................	24	1	1	2.00	2	1	1
..................................................TACAGTAAATAGTCTGGATTGA...............................................................................................	22	1	1	2.00	2	2	0
..................................................TAAGGTAAATAGTCTGGATTGATG.............................................................................................	24	1	1	2.00	2	2	0
...................................................AAAGTAAATAGTCTGGATTGATGAA...........................................................................................	25	0	1	2.00	2	2	0
..................................................TAAAGTTAATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGGTTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGACGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TAAAGAAAATAGTCTGGATTGA...............................................................................................	22	1	1	1.00	1	1	0
..................................................TAAAGTAACTAGTCTGGATTGAT..............................................................................................	23	1	1	1.00	1	1	0
..................................................TAAAGTGAATAGTCTGGATTGATGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TAAAGTAAATATTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAGTAGTCTGGATTGAT..............................................................................................	23	1	1	1.00	1	0	1
..................................................TAAAGTAAATAGTCTCGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGATAA............................................................................................	25	1	1	1.00	1	1	0
.............................................................................................CATCAACAGGCATTTACTTCA.....................................................	21	0	1	1.00	1	0	1
..................................................TAAAGTAGATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGTTTGA...............................................................................................	22	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGATGAT...........................................................................................	26	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGAG..............................................................................................	23	1	1	1.00	1	1	0
...................................................AAAGTAAATAGTCTGGATTGA...............................................................................................	21	0	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGCGTGATG.............................................................................................	24	2	1	1.00	1	1	0
..................................................TAAAGTAATTAGTCTGGATTGATGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TCAAGTAAATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
...................................................AAAGTAAATAGTCTGTATTGAT..............................................................................................	22	1	1	1.00	1	1	0
..................................................TAAAGGAAATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAGAGTAAATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAGAGTAAATAGTCTGGATTG................................................................................................	21	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGACG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGCAAATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATACTCTGGATTGAT..............................................................................................	23	1	1	1.00	1	1	0
.................................................CTAAAGTAAAGAGTCTGGATTGAT..............................................................................................	24	2	1	1.00	1	1	0
....................................................AAGTAAATAGTCTGGATTGATGA............................................................................................	23	0	1	1.00	1	0	1
..................................................TAAAGTAAATAGTCCGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGGTGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TAAAGTAAATGGTCTGGATTGA...............................................................................................	22	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGACTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGAGGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TAAAGTATATAGTCTGGATTGATGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTAGATTGAT..............................................................................................	23	1	1	1.00	1	1	0
.................................................TTAAAGTAAATAGTCTGGATTGATGA............................................................................................	26	0	1	1.00	1	0	1
....................................................AAGTAAATAGTCTGGATTGATGTG...........................................................................................	24	2	1	1.00	1	0	1
..................................................TAAGGTAAATAGTCTGGATTGA...............................................................................................	22	1	1	1.00	1	1	0
..................................................TAAAGTAAATCGTCTGGATTGATGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGATA.............................................................................................	24	1	1	1.00	1	0	1
..................................................TATAGTAAATAGTCTGGATTGAT..............................................................................................	23	1	1	1.00	1	1	0
.....................................................AGTAAATAGTCTGGATTGAT..............................................................................................	20	0	1	1.00	1	0	1
..................................................TAAAGTCAATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGATTGATGAAA..........................................................................................	27	0	1	1.00	1	1	0
..................................................TAAAGTAAAAAGTCTGGATTGATGA............................................................................................	25	1	1	1.00	1	1	0
..................................................TAAATTAAATAGTCTGGATTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGTAAATAGTCTGGTTTGATG.............................................................................................	24	1	1	1.00	1	1	0
..................................................TAAAGAAAATAGTCTGGATTGATGA............................................................................................	25	1	1	1.00	1	1	0
..........................................................ATAGTCGGGCTTGATGAAA..........................................................................................	19	2	2	0.50	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15245:9744710-9744876 +	dgr_34	candidate-rescued	TATATACCC-AT--ATATATATA-----------------------T------------ATATATATATC-------T----------------------------------------------------------------ATCTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGAAA-TGCAACAA----------------------------AAGAAGT-----------------------------------------------------------------GATAAAAAG----------------------------------A------TAATAAAACT
droVir3	scaffold_12875:1241592-1241812 -	dvi-mir-987	Known_mirbase	TT-------------------------------------------------------------GCATATG------GCGATG-----AA-------CCGGAAACGGAAACAGAA----------CGCGCG--TCGCTCA--CAAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGAAA-TGCAACAG----------------------------AAGAAG-----GATTCGAAGCGTGAAATGTGCCAAAAAAAAAAAA------------------------------AAACAAATAATTA------------------------------T--AAATAAAAACT
droMoj3	scaffold_6496:4307004-4307187 -	dmo_150	confident	GGAAGC---------------------------------GG---------------------TCCAT---------------------------------T-----AATGGCGAA------TAAC--GGATATCG-CGAATAAACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATA--TCTA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGAAA-TGCAACAG----------------------------AAGCAGA-C-AAA------CGGTGAAAT---------------------------------------------------------------------------------------GTGT--CCAGAGAAACT
droWil2	scf2_1100000004510:853169-853400 +	dwi_3	confident	CATATAAAT-AT--ATATATACATAGAGAGAGAAGGAGAGA---------------------------TC-----------------------------------------------------------------------ATAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACAAAA-TGCAACAAAAATGAAAAGAAAAAAAATGAAAAAAAGGATAATAACAGCGC-------GTGCAGTGAATCAAAA--------T----------------------------------------TATATAT----AAAA--------------GTAT--AGCTA-AAACT
dp5	XR_group5:527502-527641 -			TATATACAG-AT--ATATATA-----------------------------------------TATATATATAT-ATATATATATATAGAAAA--AAACA----TA---------------------------------------------------------------------------ATGATTAA-ATTA--ATTAAACAAACGAATGAATGAACATTTTTGCTGACAGAAG-------AAAAAAACAAA-CACAACAA----------------------------AAGAGAAGA-GAAG-------AA-------------------------------------------------------------------------------------------------------------
droPer2	scaffold_4:4590269-4590432 -	dpe_169	confident	T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGATA-TGCAACTG----------------------------GATAACAAC-GAGC-------GTGCAGTGAATCT-----------TC--GAC---------------------------------TAGTATCT----ACAGATGT-----------CGC--ATCT-GTAGCT
droAna3	scaffold_12430:12730-12892 +	dan_2	confident	T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TTCAACAG----------------------------GATAATAAC-GAGT-------GCGTAGTGAATAT-----------TT-TAAG-------------------------------------T------------TTCTATTATTTTTT--TAAGGCT--ATACT
droBip1	scf7180000396759:441114-441281 -			T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-CTCAACAG----------------------------GATAATAAC-GAGT-------GCGTAGTGAACGT-----------TTTTTAG---------------------------------TTTTATTTTATC-----CT-TT-------TTTTT--ATCTA-AGACT
droKik1	scf7180000302470:1981126-1981306 -			TGGGGGTGG-GG-----------------------GATATATTGTAC------------ATATACAGATGCGAAATGTGATA-----ACCCAAAAAGCGGAAAC------------------AGC--GG---AAGTTAA--ACTATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCTAACGAAA-TGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453851:1071640-1071883 +			TGTGTACTTGATAT-------------------------------------------GTGTACACATATCCGA-ACGTGATAACGTAACCCA--GAGCGGAAACGGAAATAAAAA------CAGC--GG---GCGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATCAATA--------T--TTAG-------------------------------------T------------TTAT---------ATCT--ACCTAAAAACT
droEle1	scf7180000491201:1028321-1028561 -			TATGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----ACCCA--ATGCGGAAACGGAAATAAAAA------CAGC--GGG--CAGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAAT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TGCAACAG----------------------------GATAATAAC-GAGT-------GCGCAGTGAATAT-----------TT---AC---------------------------------TAATACTTAAGT-----T---------------T--ACCTAAGAACT
droRho1	scf7180000780118:109553-109803 +			TATGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----ACCCA--AAGCGGAAACGGAAATGAAAA------CAGC--GGG--AAGATGAAAAAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TGCAACAG----------------------------GATAATAAC-GAGT-------GCGCAGTGAATGT-----------TT---AC---------------------------------TTATATTCTAGT-----ATATT-------TATGT--ATCTAAGAACT
droBia1	scf7180000301506:1518939-1519181 +			TACGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----ACCAA--CAGCGGAAACGGAAATAAAAACAA-GAGAAC--GC---AAGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAGATAAC-GAGT-------GCGCAGTGAATTT-----------T---TAG-------------------------------------T------------TTATTTA------ATAT--GCCTAAGAACT
droTak1	scf7180000415401:224075-224328 -			TATGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----AGCAA--CAGCGGAAACGGAAATACAAAAAATAACAAC--GG---AGAATGT--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TTCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATTT-----------TT---AC---------------------------------ATGTATTCTAGT-----TTACT-------TGTTT--GCCTATAAACT
droEug1	scf7180000409183:843218-843468 -			TATGTACATGATAT-------------------------------------------GTATACACATATGCGA-ACGTGATA-----ACCCA--AAGCGGAAACGGAAATAAAAA------CAGC--GG---AAGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAAAAT-----------TTTGTAC---------------------------------TTATATTCTAAA-----TTATT-------TCTAT--ACCTAAAAACT
dm3	chrX:10848971-10849125 +			TTTATATAT-AT--ATATATATA-----------------------T------------ATATATATATA-----TATA----TATAACAAA--AAACAGAGGCG---------------------------------------------------------------------------ACGATCGG-CGGATTTTCG--CCAGTCCATCAAGTGGAA---AGACAAACTGCAAATGGCAAATTAAAATAAATTGAGGCAG----------------------------AAAA-----------------GCGTAAAAAA------------------------------------------------------------------------------------A------TAACA--AGA
droSim2	x:13950238-13950383 -			TATCTATAA-AT--ATATCTA-----------------------------------------TAAATATATCT-AT-------------------------------------------------------------------------------------AAATATATGTATAAATATAATTATAAA-CATA--TCTA--TAAATATATCTATAAACATATCTA-----------------------------------------------------------------------------------------TAATAAATTA-----------T--TGATGCAAATACCTCACAAGAGGTTA-------------------------------TAAA------ATAA--ATAGCAAAACC
droSec2	scaffold_1:2832470-2832622 -	dse_6	confident	T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACAAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATTA-----------T--TCAG-------------------------------------A------------TTATC-------TATG------TATAAGCT
droYak3	2L:17856006-17856161 -	dya_3	confident	T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAAGTAAC-GAGT-------GCGCAGTGATTTA-----------T--TCAG-------------------------------------A------------TTATC-------TCTAT--ACC-ATAACCT
droEre2	scaffold_4929:17456251-17456504 +	der_2	confident	TATATACAT-AC--ACGTATACT-----------------------GATACTCGTATGTGCACACATATGGGA-ACGTGATA-----ACCCA--AAGCGGAAACGGAAATGCGAG------GAGC--GG---AAGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATTA-----------T--TCAG-------------------------------------A------------TTATC-------TACAC--AC-CATGAGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TATATACCC-AT--ATATATATA-----------------------T------------ATATATATATC-------T----------------------------------------------------------------ATCTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGAAA-TGCAACAA----------------------------AAGAAGT-----------------------------------------------------------------GATAAAAAG----------------------------------A------TAATAAAACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	326.00	326	69	257
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	240.00	240	33	207
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	110.00	110	46	64
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	56.00	56	26	30
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	21.00	21	3	18
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	17.00	17	9	8
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	14.00	14	8	6
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	5.00	5	1	4
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	4.00	4	0	4
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	3.00	3	3	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	2.00	2	0	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	2.00	2	1	1
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	2.00	2	1	1
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	2.00	2	0	2
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	1.00	1	1	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	1.00	1	0	1
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	1.00	1	0	1
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	23	1	1.00	1	1	0
..............................................................................................................................................................TTAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	26	1	1.00	1	1	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATGTG.............................................................................................................................................................................................................................................	24	1	1.00	1	1	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	1.00	1	1	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	1.00	1	0	1

droVir3

TT-------------------------------------------------------------GCATATG------GCGATG-----AA-------CCGGAAACGGAAACAGAA----------CGCGCG--TCGCTCA--CAAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TTTA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGAAA-TGCAACAG----------------------------AAGAAG-----GATTCGAAGCGTGAAATGTGCCAAAAAAAAAAAA------------------------------AAACAAATAATTA------------------------------T--AAATAAAAACT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	14781.00	14781	69	2068	178	48	1	18	0	29	0	35	0	0	0	0	1449	632	400	1097	670	585	24	507	1357	2	0	0	1	3	129	183	38	118	1	16	0	0	0	0	1	76	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	7	2	106	19	22	4470	345	0	0	0	11	5	0	0	32	0	0	1	2	0	5	3	5	8
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	13362.00	13362	218	6246	227	50	2	25	0	146	1	79	4	0	0	0	338	175	84	261	103	124	34	81	607	3	0	0	2	2	117	105	32	111	0	24	0	1	0	0	2	93	0	1	3	0	0	0	0	0	0	0	1	0	0	0	0	4	1	36	20	315	2841	706	0	0	0	0	2	1	6	77	13	8	10	7	0	2	4	5	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	8384.00	8384	51	2063	144	8	1	6	0	85	2	32	0	0	0	0	337	212	153	285	244	122	6	162	429	0	0	0	0	0	67	69	22	77	0	11	1	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	9	3	5	3326	389	0	0	0	0	0	0	1	19	2	1	1	2	0	0	1	2	1
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	3568.00	3568	12	255	83	13	1	12	2	36	2	40	0	0	1	0	212	105	69	166	71	101	13	53	320	0	0	0	1	2	59	55	13	77	0	18	0	0	0	1	1	49	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	5	239	1173	297	2	0	0	0	1	0	0	0	0	2	1	0	0	0	0	0	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	3029.00	3029	3	150	133	0	0	2	0	0	0	1	0	0	0	0	103	93	64	94	125	55	1	70	128	0	0	0	0	0	6	14	2	11	0	7	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1839	111	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	917.00	917	24	421	27	3	0	5	0	6	0	3	0	0	0	0	33	14	1	13	10	5	2	12	42	0	0	0	0	0	11	9	3	9	0	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	15	209	22	0	0	0	0	2	0	0	2	3	1	0	2	0	0	0	0	1
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	898.00	898	8	158	23	2	0	2	0	3	0	6	0	0	0	0	60	33	23	51	41	16	1	18	53	0	0	0	0	0	17	22	1	20	0	2	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	319	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	581.00	581	9	450	13	0	0	1	0	0	0	0	0	0	0	0	5	3	5	1	10	7	0	3	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	62	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	484.00	484	6	140	21	0	0	1	0	6	0	2	0	0	0	0	10	7	6	7	9	6	1	7	20	0	0	0	0	0	5	7	1	8	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	196	12	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	481.00	481	9	5	1	0	0	16	0	0	0	16	0	0	0	0	0	0	0	1	0	0	20	0	1	0	0	0	0	0	133	95	18	79	0	13	0	0	0	0	0	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	14	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	349.00	349	7	333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	265.00	265	0	6	2	1	0	0	0	4	2	1	0	0	0	0	13	5	6	10	7	9	1	4	33	0	0	0	0	0	5	2	0	7	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	101	28	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	247.00	247	1	14	13	0	0	2	0	9	0	3	0	0	0	0	12	7	3	16	1	9	0	3	21	0	0	0	0	0	3	8	0	4	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	91	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	142.00	142	0	45	1	0	0	0	0	0	0	0	0	0	0	0	3	2	3	3	5	3	0	0	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	35	31	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	134.00	134	0	3	18	0	0	0	0	0	0	0	0	0	0	0	7	4	0	3	5	2	0	3	4	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	73	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	101.00	101	0	57	1	0	0	0	0	2	0	1	0	0	0	0	2	0	1	5	2	1	1	1	3	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	13	4	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	19	1	94.00	94	3	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	84.00	84	1	1	0	0	0	0	0	5	0	2	0	0	0	0	8	2	1	2	1	4	0	0	5	0	0	0	0	0	1	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	34	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	82.00	82	0	0	0	1	0	1	0	3	0	2	0	0	0	0	9	2	1	4	1	2	0	0	9	0	0	0	0	0	3	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	27	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	79.00	79	1	66	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	51.00	51	1	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	50.00	50	0	6	0	0	0	0	0	0	0	1	0	0	0	0	0	2	2	5	1	1	0	3	5	0	0	0	0	0	1	1	2	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	41.00	41	0	22	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATCC..............................................................................................................................................................................................................................................	25	1	35.00	35	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	7	8	1	8	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	22	1	34.00	34	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGA.....................................................................................................................................................................................................................................................	18	1	31.00	31	0	10	0	0	0	0	0	0	0	0	0	0	0	0	6	2	2	2	1	1	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	28.00	28	0	0	2	0	0	0	0	0	0	0	0	0	0	0	5	1	2	4	3	1	0	4	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	21	1	27.00	27	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	23	1	25.00	25	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	3	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	22.00	22	0	8	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	21.00	21	0	0	2	0	0	0	0	0	0	0	0	0	0	0	4	1	1	1	3	1	0	3	2	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	21	1	19.00	19	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	3	2	1	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	19.00	19	0	0	1	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	4	1	0	3	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	19	1	18.00	18	0	12	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	17.00	17	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	19	1	16.00	16	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	16.00	16	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AGTCTGGATTGATGA..............................................................................................................................................................................................................................................	15	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	19	1	15.00	15	0	9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACA...............................................................................................................................................................................................	22	1	15.00	15	0	2	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	3	0	0	1	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	18	1	13.00	13	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	20	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	1	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CA--CAAATGTTGAACTGTGCT.......................................................................................................................................................................................................................................................................	20	1	13.00	13	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	13.00	13	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................ATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	16	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................................................................................................................	22	1	12.00	12	1	0	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	12.00	12	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTT..................................................................................................................................................................................................................................................	21	1	11.00	11	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	22	1	10.00	10	0	0	1	1	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	22	1	9.00	9	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TCAACAGGCATTTACTTCA..................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	19	1	8.00	8	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGAC....................................................................................................................................................................................................................................................	19	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	23	1	7.00	7	0	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	18	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	7.00	7	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATCT..............................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACT...............................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAAA...............................................................................................................................................................................................................................................	24	1	6.00	6	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATC...................................................................................................................................................................................................................................................	20	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTCC............................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTC..................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	24	1	5.00	5	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGACC............................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGAAGC---------------------------------GG---------------------TCCAT---------------------------------T-----AATGGCGAA------TAAC--GGATATCG-CGAATAAACTGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGTTTATA--TCTA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGAAA-TGCAACAG----------------------------AAGCAGA-C-AAA------CGGTGAAAT---------------------------------------------------------------------------------------GTGT--CCAGAGAAACT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	8346.00	8346	453	2	1909	5219	18	745
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	6790.00	6790	353	63	1179	3586	30	1579
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	5528.00	5528	257	2	1203	3276	4	786
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	4314.00	4314	124	137	739	2284	35	995
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	1870.00	1870	165	0	522	1064	0	119
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	359.00	359	46	0	67	219	2	25
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	325.00	325	4	4	72	186	0	59
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	273.00	273	40	1	45	142	2	43
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	259.00	259	36	0	50	153	0	20
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	205.00	205	6	0	24	92	0	83
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	168.00	168	6	1	109	46	0	6
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	140.00	140	15	3	21	62	3	36
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	114.00	114	23	0	24	60	0	7
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	78.00	78	16	0	20	36	0	6
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	66.00	66	3	3	8	32	0	20
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	40.00	40	2	0	9	26	0	3
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	33.00	33	1	0	4	24	0	4
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	22	1	30.00	30	3	0	5	18	0	4
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	27.00	27	3	0	3	19	0	2
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................................................................................................................	22	1	25.00	25	1	0	0	0	24	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	20.00	20	2	0	4	11	3	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTT..................................................................................................................................................................................................................................................	21	1	16.00	16	1	0	13	2	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	14.00	14	2	0	2	1	1	8
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	10.00	10	1	0	3	6	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	10.00	10	0	0	2	3	0	5
...............................................................................................................................................................TAAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	19	1	10.00	10	3	0	2	4	0	1
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	10.00	10	1	0	3	5	0	1
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	9.00	9	0	0	5	4	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	9.00	9	1	0	3	4	0	1
.................................................................................................................................................................AAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	20	1	9.00	9	3	0	2	4	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	8.00	8	0	0	1	5	0	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	8.00	8	0	0	2	5	0	1
................................................................................................................................................................AAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	19	1	8.00	8	3	0	1	4	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	6.00	6	1	0	2	1	2	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	24	1	6.00	6	1	0	2	2	0	1
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAAA...............................................................................................................................................................................................................................................	24	1	6.00	6	1	0	0	4	0	1
.................................................................................................................................................................AAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	21	1	6.00	6	3	0	1	2	0	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	19	1	5.00	5	4	0	0	1	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	4	0	1
................................................................................................................................................................AAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	4	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTT..................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	4	0	0	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	4.00	4	0	0	0	3	1	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	4.00	4	0	0	2	2	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	3.00	3	1	0	0	2	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGA.....................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	1	2	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAAA...........................................................................................................................................................................................................................................	28	1	3.00	3	0	0	1	1	0	1
....................................................................................................................................................................TAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	1	2	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	3	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTC.............................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.............................................................................................................................................................................................................................................	26	1	3.00	3	0	0	1	2	0	0
.................................................................................................................................................................................................................TCAACAGGCATTTACTTCA..................................................................................................................................................................................................	19	1	3.00	3	1	0	2	0	0	0

droWil2

CATATAAAT-AT--ATATATACATAGAGAGAGAAGGAGAGA---------------------------TC-----------------------------------------------------------------------ATAATGTTGAACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACAAAA-TGCAACAAAAATGAAAAGAAAAAAAATGAAAAAAAGGATAATAACAGCGC-------GTGCAGTGAATCAAAA--------T----------------------------------------TATATAT----AAAA--------------GTAT--AGCTA-AAACT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	275455.00	275455	62869	249	539	2263	209535
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	63257.00	63257	3524	74	283	4858	54518
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	36310.00	36310	13557	170	305	211	22067
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	29781.00	29781	6961	47	46	126	22601
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	29516.00	29516	19692	193	325	184	9122
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	5706.00	5706	378	19	13	277	5019
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	3770.00	3770	1333	31	13	5	2388
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	3726.00	3726	146	6	32	543	2999
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	3334.00	3334	820	78	59	18	2359
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	2967.00	2967	1842	29	36	14	1046
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	1865.00	1865	74	0	6	5	1780
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	1661.00	1661	68	1	11	312	1269
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	1493.00	1493	1469	0	1	0	23
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	914.00	914	420	2	4	2	486
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	836.00	836	237	3	3	2	591
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	766.00	766	735	4	3	1	23
...............................................................................................................................................................TAAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	19	1	641.00	641	641	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	611.00	611	385	0	1	5	220
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	593.00	593	500	0	0	2	91
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	401.00	401	390	0	0	0	11
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	396.00	396	5	0	0	2	389
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	322.00	322	52	12	2	0	256
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	215.00	215	21	1	0	2	191
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	22	1	182.00	182	11	0	2	7	162
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	22	1	178.00	178	12	2	1	1	162
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	24	1	160.00	160	4	0	1	0	155
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	149.00	149	34	0	0	18	97
....................................................................................................................................................................TAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	19	1	145.00	145	67	0	0	0	78
................................................................................................................................................................AAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	21	1	138.00	138	136	0	0	0	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	106.00	106	69	0	4	1	32
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	98.00	98	16	0	3	15	64
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	23	1	83.00	83	36	0	0	0	47
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	24	1	66.00	66	64	0	0	0	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.............................................................................................................................................................................................................................................	26	1	62.00	62	3	0	0	2	57
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	62.00	62	9	0	0	2	51
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTATG................................................................................................................................................................................................................................................	23	1	58.00	58	0	0	0	1	57
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	56.00	56	45	0	1	0	10
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	23	1	54.00	54	1	4	0	1	48
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	23	1	54.00	54	3	0	1	27	23
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	52.00	52	5	0	0	15	32
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	24	1	52.00	52	13	0	0	1	38
...............................................................................................................................................................TAAAGTAAATAGTCTGGA.....................................................................................................................................................................................................................................................	18	1	47.00	47	44	0	0	0	3
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	44.00	44	1	1	0	8	34
................................................................................................................................................................AAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	19	1	44.00	44	38	1	0	0	5
................................................................................................................................................................AAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	18	1	43.00	43	42	1	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	22	1	43.00	43	42	0	0	0	1
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................................................................................................................	22	1	41.00	41	16	2	0	5	18
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	39.00	39	21	0	0	0	18
..................................................................................................................................................................AGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	19	1	38.00	38	14	0	1	0	23
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	36.00	36	33	0	0	0	3
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	33.00	33	1	0	0	0	32
...............................................................................................................................................................TAAAGTAAATAGTCTGGAC....................................................................................................................................................................................................................................................	19	1	33.00	33	33	0	0	0	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	20	1	31.00	31	3	1	1	0	26
...............................................................................................................................................................TAAAGTAAATAGTCTGGATG...................................................................................................................................................................................................................................................	20	1	28.00	28	1	0	0	0	27
.....................................................................C-----------------------------------------------------------------------ATAATGTTGAACTGTGCT.......................................................................................................................................................................................................................................................................	19	1	28.00	28	26	0	0	1	1
....................................................................................................................................................................TAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	18	1	28.00	28	25	0	0	1	2
....................................................................................................................................................................TAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	20	1	27.00	27	7	0	0	4	16
...................................................................................................................................................................GTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	20	1	26.00	26	7	2	0	0	17
.....................................................................................................................................................................AAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	18	1	25.00	25	10	1	0	0	14
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	23	1	24.00	24	0	0	0	0	24
.................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACT...............................................................................................................................................................................................	22	1	24.00	24	6	0	0	0	18
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	23.00	23	0	0	1	5	17
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAC.............................................................................................................................................................................................................................................	26	1	20.00	20	4	0	0	1	15
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	21	1	19.00	19	1	0	0	2	16

dp5

TATATACAG-AT--ATATATA-----------------------------------------TATATATATAT-ATATATATATATAGAAAA--AAACA----TA---------------------------------------------------------------------------ATGATTAA-ATTA--ATTAAACAAACGAATGAATGAACATTTTTGCTGACAGAAG-------AAAAAAACAAA-CACAACAA----------------------------AAGAGAAGA-GAAG-------AA-------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................AACGAATGAATGAACATTTTTGCT...................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................ACGAATGAATGAACATTTTT......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GAATGAACATTTTTGCTGACA...............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...ATACAG-AT--ATATATA-----------------------------------------TATAT...................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0

droPer2

T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TATA--TTCA--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTAAACGATA-TGCAACTG----------------------------GATAACAAC-GAGC-------GTGCAGTGAATCT-----------TC--GAC---------------------------------TAGTATCT----ACAGATGT-----------CGC--ATCT-GTAGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	11561.00	11561	52	73	13	5629	5135	659
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	10084.00	10084	546	67	95	4453	3527	1396
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	4994.00	4994	26	43	1	2179	2170	575
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	3907.00	3907	45	26	62	1664	1435	675
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	1471.00	1471	2	15	0	674	702	78
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	1261.00	1261	0	23	0	549	625	64
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	1128.00	1128	39	15	11	524	365	174
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	434.00	434	3	6	10	183	152	80
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	418.00	418	1	8	0	160	199	50
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	321.00	321	0	0	1	128	105	87
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	229.00	229	0	0	1	79	83	66
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	161.00	161	1	0	4	55	61	40
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	93.00	93	4	0	0	35	52	2
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	90.00	90	0	7	0	29	49	5
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	49.00	49	0	2	0	19	24	4
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	37.00	37	5	5	1	13	13	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	35.00	35	0	0	0	18	16	1
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	24	1	34.00	34	0	0	0	15	11	8
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	22	1	24.00	24	0	0	0	8	16	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	20.00	20	0	0	0	9	11	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	19.00	19	14	0	0	0	5	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	16.00	16	0	0	0	5	11	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	14.00	14	0	0	0	8	6	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	12.00	12	2	0	0	2	8	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	22	1	12.00	12	0	0	1	2	5	4
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	11.00	11	0	0	0	8	1	2
.................................................................................................................................................................AAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	21	1	11.00	11	0	0	0	8	3	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	11.00	11	0	1	0	1	9	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	9.00	9	0	1	0	2	6	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	19	1	9.00	9	5	0	0	0	4	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	8.00	8	0	1	0	2	5	0
...................................................................................................................................................................GTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	20	1	8.00	8	0	0	0	4	0	4
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	7.00	7	0	0	2	0	5	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	22	1	7.00	7	2	1	0	2	2	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	6.00	6	0	0	0	1	3	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	1	5	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	1	4	1
...............................................................................................................................................................TAAAGTAAATAGTCTGGA.....................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	5	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	1	4	0
....................................................................................................................................................................TAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	3	0	2
................................................................................................................................................................AAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	1	3	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	4.00	4	0	0	0	2	2	0

droAna3

T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TTCAACAG----------------------------GATAATAAC-GAGT-------GCGTAGTGAATAT-----------TT-TAAG-------------------------------------T------------TTCTATTATTTTTT--TAAGGCT--ATACT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	35651.00	35651	113	28	46	1741	1135	32588
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	21708.00	21708	75	2	2	2619	622	18388
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	19827.00	19827	37	32	38	795	484	18441
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	15463.00	15463	101	12	1	3501	770	11078
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	3441.00	3441	29	2	2	163	60	3185
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	3339.00	3339	17	2	0	360	45	2915
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	3218.00	3218	46	1	0	808	192	2171
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	3096.00	3096	41	4	0	587	87	2377
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	1632.00	1632	7	2	2	84	24	1513
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	1195.00	1195	1	1	2	60	34	1097
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	856.00	856	0	0	2	33	57	764
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	842.00	842	0	0	3	26	16	797
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	484.00	484	3	0	4	55	14	408
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	469.00	469	8	0	0	99	8	354
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	123.00	123	0	0	0	8	3	112
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	79.00	79	1	0	0	4	2	72
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	65.00	65	2	1	0	24	14	24
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	64.00	64	0	0	0	2	1	61
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	56.00	56	0	0	0	0	3	53
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	54.00	54	2	0	0	3	2	47
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	53.00	53	0	0	0	3	4	46
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	22	1	50.00	50	2	0	0	26	5	17
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	44.00	44	0	0	0	4	1	39
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	24	1	42.00	42	0	0	0	5	3	34
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	41.00	41	0	0	0	8	2	31
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTT..................................................................................................................................................................................................................................................	21	1	39.00	39	0	0	0	5	2	32
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	37.00	37	0	0	0	7	2	28
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	22	1	33.00	33	0	0	0	3	0	30
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	29.00	29	0	0	0	26	0	3
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTA..................................................................................................................................................................................................................................................	21	1	25.00	25	0	0	0	0	2	23
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	24.00	24	1	0	0	7	0	16
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	24.00	24	0	1	1	2	0	20
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	20.00	20	0	0	0	1	0	19
....................................................................................................................................................................TAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	19	1	19.00	19	0	0	0	0	1	18
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	18.00	18	1	0	0	1	0	16
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	17.00	17	0	0	0	3	0	14
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	17.00	17	0	0	0	7	1	9
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	22	1	15.00	15	0	0	0	1	1	13
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	23	1	15.00	15	0	0	0	1	0	14
.................................................................................................................................................................AAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	20	1	14.00	14	2	0	0	1	0	11
................................................................................................................................................................AAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	19	1	14.00	14	0	0	0	7	0	7
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................................................................................................................	22	1	13.00	13	2	8	1	0	0	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	13.00	13	0	0	0	2	0	11
................................................................................................................................................................AAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	21	1	12.00	12	0	0	0	3	2	7
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	22	1	11.00	11	0	0	0	3	0	8
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	11.00	11	0	1	0	5	0	5
....................................................................................................................................................................TAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	20	1	10.00	10	0	1	0	0	0	9
..................................................................................................................................................................AGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	19	1	10.00	10	0	0	0	1	0	9
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTC..................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	1	2	6
...................................................................................................................................................................GTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	20	1	8.00	8	0	0	1	0	0	7
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	23	1	8.00	8	0	0	1	0	0	7
...............................................................................................................................................................TAAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	19	1	7.00	7	0	0	0	2	3	2
................................................................................................................................................................AAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	3	0	4
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTT.............................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	1	6

droBip1

T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-CTCAACAG----------------------------GATAATAAC-GAGT-------GCGTAGTGAACGT-----------TTTTTAG---------------------------------TTTTATTTTATC-----CT-TT-------TTTTT--ATCTA-AGACT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGGGGGTGG-GG-----------------------GATATATTGTAC------------ATATACAGATGCGAAATGTGATA-----ACCCAAAAAGCGGAAAC------------------AGC--GG---AAGTTAA--ACTATGTTGGACTGTGCTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCTAACGAAA-TGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTGTACTTGATAT-------------------------------------------GTGTACACATATCCGA-ACGTGATAACGTAACCCA--GAGCGGAAACGGAAATAAAAA------CAGC--GG---GCGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATCAATA--------T--TTAG-------------------------------------T------------TTAT---------ATCT--ACCTAAAAACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TATGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----ACCCA--ATGCGGAAACGGAAATAAAAA------CAGC--GGG--CAGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAAT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TGCAACAG----------------------------GATAATAAC-GAGT-------GCGCAGTGAATAT-----------TT---AC---------------------------------TAATACTTAAGT-----T---------------T--ACCTAAGAACT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TATGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----ACCCA--AAGCGGAAACGGAAATGAAAA------CAGC--GGG--AAGATGAAAAAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGTA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTCGAACGAAA-TGCAACAG----------------------------GATAATAAC-GAGT-------GCGCAGTGAATGT-----------TT---AC---------------------------------TTATATTCTAGT-----ATATT-------TATGT--ATCTAAGAACT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TACGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----ACCAA--CAGCGGAAACGGAAATAAAAACAA-GAGAAC--GC---AAGATGA--AAAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAGATAAC-GAGT-------GCGCAGTGAATTT-----------T---TAG-------------------------------------T------------TTATTTA------ATAT--GCCTAAGAACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATGTACTTGATAT-------------------------------------------GTGTACACATATGCGA-ACGTGATA-----AGCAA--CAGCGGAAACGGAAATACAAAAAATAACAAC--GG---AGAATGT--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TTCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATTT-----------TT---AC---------------------------------ATGTATTCTAGT-----TTACT-------TGTTT--GCCTATAAACT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TATGTACATGATAT-------------------------------------------GTATACACATATGCGA-ACGTGATA-----ACCCA--AAGCGGAAACGGAAATAAAAA------CAGC--GG---AAGATGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAAAAT-----------TTTGTAC---------------------------------TTATATTCTAAA-----TTATT-------TCTAT--ACCTAAAAACT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTATATAT-AT--ATATATATA-----------------------T------------ATATATATATA-----TATA----TATAACAAA--AAACAGAGGCG---------------------------------------------------------------------------ACGATCGG-CGGATTTTCG--CCAGTCCATCAAGTGGAA---AGACAAACTGCAAATGGCAAATTAAAATAAATTGAGGCAG----------------------------AAAA-----------------GCGTAAAAAA------------------------------------------------------------------------------------A------TAACA--AGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................G----------------------------AAAA-----------------GCGTAAAAAA------------------------------------------------------------------------------------A------TAAC......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AATTGAGGCAG----------------------------AAAA-----------------GCGTA..........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATATATA-----------------------T------------ATATATATATA-----TATA----TATAACA............................................................................................................................................................................................................................................................................................................................................	30	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................TATATATATA-----TATA----TATAAC.............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATATATA-----------------------T------------ATATATATATA-----TATA----...................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TAT-AT--ATATATATA-----------------------T------------ATATATATATA-----...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AT--ATATATATA-----------------------T------------ATATATATATA-----...........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATATAT-AT--ATATATATA-----------------------T------------ATATAT.....................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ATATA-----------------------T------------ATATATATATA-----TATA----T..................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TATCTATAA-AT--ATATCTA-----------------------------------------TAAATATATCT-AT-------------------------------------------------------------------------------------AAATATATGTATAAATATAATTATAAA-CATA--TCTA--TAAATATATCTATAAACATATCTA-----------------------------------------------------------------------------------------TAATAAATTA-----------T--TGATGCAAATACCTCACAAGAGGTTA-------------------------------TAAA------ATAA--ATAGCAAAACC

Size

Hit Count

Total Norm

Total

M023

Head

M024

Male-body

M025

Embryo

M053

Female-body

O001

Testis

O002

Head

SRR553485

Ovary

SRR553486

Ovary

SRR553487

Ovary

SRR553488

Ovary

SRR618934

Ovary

V044

Embryo

SRR902008

Ovary

SRR902009

Testis

SRR1275487

Male larvae

SRR1275485

Male prepupae

SRR1275483

Male prepupae

No Reads

droSec2

T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACAAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATTA-----------T--TCAG-------------------------------------A------------TTATC-------TATG------TATAAGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	44033.00	44033	211	2680	2052	39090
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	24351.00	24351	105	1450	53	22743
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	21777.00	21777	64	1175	3287	17251
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	13300.00	13300	161	1040	116	11983
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	5644.00	5644	50	252	144	5198
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	5345.00	5345	91	350	6	4898
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	2947.00	2947	23	142	9	2773
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	2602.00	2602	10	111	318	2163
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	2208.00	2208	36	115	7	2050
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	1657.00	1657	1	117	209	1330
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	1126.00	1126	0	50	170	906
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	704.00	704	2	60	17	625
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	560.00	560	15	25	0	520
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	183.00	183	1	5	2	175
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	180.00	180	12	17	0	151
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	117.00	117	0	12	1	104
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	96.00	96	2	12	9	73
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	24	1	83.00	83	1	4	0	78
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	73.00	73	2	5	0	66
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	72.00	72	0	5	5	62
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	71.00	71	2	2	3	64
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	22	1	61.00	61	0	6	0	55
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	50.00	50	0	10	3	37
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	42.00	42	0	3	1	38
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	22	1	41.00	41	0	3	9	29
..................................................................................................................................................................AGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	19	1	37.00	37	2	2	0	33
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	22	1	36.00	36	2	1	6	27
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	34.00	34	2	0	0	32
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	31.00	31	0	2	3	26
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	25.00	25	0	2	0	23
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	23	1	25.00	25	0	1	14	10
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	25.00	25	0	0	2	23
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	23.00	23	0	1	2	20
....................................................................................................................................................................TAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	19	1	20.00	20	0	0	2	18
.................................................................................................................................................................AAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	21	1	19.00	19	1	3	0	15
...............................................................................................................................................................TAAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	19	1	18.00	18	2	2	0	14
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	17.00	17	0	1	2	14
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	23	1	17.00	17	1	1	0	15
.................................................................................................................................................................AAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	20	1	15.00	15	1	0	0	14
........................................................................................................................................................................................AAGT-TGCA--TTCG--AGAATTC......................................................................................................................................................................................................................	19	1	15.00	15	0	0	13	2
................................................................................................................................................................AAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	19	1	14.00	14	0	0	0	14
....................................................................................................................................................................TAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	20	1	14.00	14	0	0	7	7
...............................................................................................................................................................TAAAGTAAATAGTCTGGA.....................................................................................................................................................................................................................................................	18	1	14.00	14	1	1	0	12
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	23	1	12.00	12	3	1	1	7
...............................................................................................................................................................TAAAGTAAATAGTCTGGATG...................................................................................................................................................................................................................................................	20	1	11.00	11	0	0	0	11
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAC.............................................................................................................................................................................................................................................	26	1	11.00	11	0	2	1	8
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGTT.............................................................................................................................................................................................................................................	26	1	10.00	10	0	1	0	9
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTT..................................................................................................................................................................................................................................................	21	1	10.00	10	3	0	0	7
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	10.00	10	0	0	0	10
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.............................................................................................................................................................................................................................................	26	1	9.00	9	0	0	0	9
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	9
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	22	1	9.00	9	0	0	0	9
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	8.00	8	0	0	2	6
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	7.00	7	1	0	0	6
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	24	1	7.00	7	1	1	0	5
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	6.00	6	0	1	0	5

droYak3

T-------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAAGTAAC-GAGT-------GCGCAGTGATTTA-----------T--TCAG-------------------------------------A------------TTATC-------TCTAT--ACC-ATAACCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	30159.00	30159	23751	309	84	107	831	4313	761	0	0	1	2
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	16433.00	16433	7212	184	22	2	1442	7105	464	1	0	1	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	9666.00	9666	4936	101	4	0	796	3518	311	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	4504.00	4504	1044	116	70	201	433	2181	353	0	0	1	105
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	3691.00	3691	2992	43	4	4	72	505	71	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	2016.00	2016	880	31	1	1	183	862	58	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	1554.00	1554	160	64	0	0	268	994	68	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	941.00	941	548	18	1	0	64	291	19	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	717.00	717	709	1	0	0	0	7	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	456.00	456	137	21	4	15	48	198	30	0	0	0	3
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	359.00	359	188	1	1	0	69	97	3	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	295.00	295	42	2	0	10	31	182	28	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	282.00	282	242	6	0	0	5	28	1	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	264.00	264	249	0	4	0	2	8	1	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	19	1	223.00	223	222	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	197.00	197	170	0	0	0	8	16	3	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	175.00	175	24	0	4	6	16	115	10	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	171.00	171	158	2	1	2	2	6	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	163.00	163	32	0	1	0	12	89	28	0	0	0	1
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	111.00	111	14	8	0	0	19	69	1	0	0	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	91.00	91	61	2	0	0	6	21	1	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	21	1	80.00	80	79	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	49.00	49	25	0	0	0	4	19	1	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	22	1	44.00	44	5	1	0	0	3	35	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	38.00	38	1	0	0	0	1	36	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	24	1	34.00	34	33	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	22	1	33.00	33	33	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	30.00	30	23	0	0	0	0	7	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	23	1	30.00	30	24	1	0	0	0	5	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	29.00	29	9	0	1	0	3	16	0	0	0	0	0
....................................................................................................................................................................TAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	19	1	28.00	28	26	0	0	0	0	1	1	0	0	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	27.00	27	13	1	0	0	1	11	1	0	0	0	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	22	1	27.00	27	17	6	0	0	1	2	1	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGAT....................................................................................................................................................................................................................................................	18	1	24.00	24	24	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	19	1	24.00	24	21	0	0	0	0	3	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	23.00	23	7	1	0	0	3	9	3	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	23.00	23	10	1	0	0	5	7	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	23.00	23	3	0	0	0	2	18	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGAC....................................................................................................................................................................................................................................................	19	1	17.00	17	17	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	17.00	17	7	1	0	0	0	7	2	0	0	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................................................................................................................	22	1	17.00	17	6	2	8	0	1	0	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTT..................................................................................................................................................................................................................................................	21	1	16.00	16	1	0	0	0	5	10	0	0	0	0	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	22	1	16.00	16	5	0	0	1	6	4	0	0	0	0	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	13.00	13	2	2	0	1	2	6	0	0	0	0	0
....................................................................................................................................................................TAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	18	1	11.00	11	8	0	0	0	1	1	1	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAC.............................................................................................................................................................................................................................................	26	1	11.00	11	3	0	1	0	1	6	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	10.00	10	8	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGA.....................................................................................................................................................................................................................................................	18	1	10.00	10	8	1	0	0	0	1	0	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	24	1	10.00	10	0	0	0	0	1	7	2	0	0	0	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	20	1	9.00	9	5	3	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	7.00	7	1	0	0	1	3	2	0	0	0	0	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	23	1	6.00	6	0	4	0	0	0	0	2	0	0	0	0
................................................................................................................................................................AAAGTAAATAGTCTGGAC....................................................................................................................................................................................................................................................	18	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	18	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	21	1	5.00	5	0	1	1	0	2	1	0	0	0	0	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	5.00	5	0	2	0	0	0	3	0	0	0	0	0

droEre2

TATATACAT-AC--ACGTATACT-----------------------GATACTCGTATGTGCACACATATGGGA-ACGTGATA-----ACCCA--AAGCGGAAACGGAAATGCGAG------GAGC--GG---AAGACGA--ACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGT-TGCA--TTCG--AGAATTCATCAACAGGCATTTACTTCAACTGCAG-------TTTGAACGAAA-TGCAACAG----------------------------GAAAATAAC-GAGT-------GCGCAGTGAATTA-----------T--TCAG-------------------------------------A------------TTATC-------TACAC--AC-CATGAGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	24	1	86227.00	86227	444	23	2282	233	2538	80707	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	25	1	40626.00	40626	114	12	760	280	1179	38281	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	22	1	40396.00	40396	184	1	2484	9	1113	36605	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	23	1	35509.00	35509	371	7	4447	11	1525	29148	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	23	1	10700.00	10700	85	5	276	17	423	9894	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	21	1	5642.00	5642	102	0	654	0	193	4693	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	22	1	5148.00	5148	68	0	490	1	219	4370	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	24	1	4258.00	4258	19	1	92	26	151	3969	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	21	1	3760.00	3760	29	0	198	0	126	3407	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	26	1	3147.00	3147	6	0	62	14	81	2984	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	25	1	1784.00	1784	4	0	30	11	60	1679	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	25	1	1021.00	1021	6	0	20	3	38	954	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	24	1	466.00	466	1	0	62	25	4	374	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTG..................................................................................................................................................................................................................................................	20	1	407.00	407	8	0	37	0	18	344	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAA................................................................................................................................................................................................................................................	23	1	340.00	340	2	0	9	0	6	323	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAC................................................................................................................................................................................................................................................	23	1	329.00	329	1	0	0	0	0	328	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	21	1	299.00	299	2	0	12	0	8	277	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	24	1	269.00	269	3	0	10	1	13	242	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	27	1	200.00	200	0	0	6	0	8	186	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGAAA............................................................................................................................................................................................................................................	26	1	154.00	154	0	0	1	0	9	144	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGAG................................................................................................................................................................................................................................................	23	1	149.00	149	1	0	1	0	0	147	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAT.............................................................................................................................................................................................................................................	26	1	115.00	115	1	0	0	1	3	110	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	22	1	111.00	111	0	0	2	3	4	102	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	23	1	103.00	103	0	0	0	0	0	103	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATGT..............................................................................................................................................................................................................................................	24	1	102.00	102	0	0	2	0	6	94	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATT...............................................................................................................................................................................................................................................	23	1	98.00	98	2	0	4	3	1	88	0
................................................................................................................................................................AAAGTAAATAGTCTGGATTGATA...............................................................................................................................................................................................................................................	23	1	91.00	91	0	0	0	0	0	91	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	22	1	83.00	83	4	0	0	0	1	78	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATC...............................................................................................................................................................................................................................................	24	1	65.00	65	0	0	4	0	0	61	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATT...................................................................................................................................................................................................................................................	20	1	59.00	59	4	0	4	0	3	48	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGG..............................................................................................................................................................................................................................................	25	1	58.00	58	2	0	3	1	1	51	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGC..............................................................................................................................................................................................................................................	25	1	54.00	54	1	0	2	0	2	49	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	21	1	50.00	50	1	0	0	1	1	47	0
....................................................................................................................................................................TAAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	19	1	47.00	47	0	0	0	0	0	47	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	20	1	45.00	45	0	0	3	0	0	42	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	20	1	36.00	36	4	0	1	0	1	30	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGC.................................................................................................................................................................................................................................................	22	1	34.00	34	0	0	15	0	0	19	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGT.................................................................................................................................................................................................................................................	22	1	34.00	34	1	0	8	0	2	23	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGG.................................................................................................................................................................................................................................................	22	1	33.00	33	0	0	3	0	1	29	0
.................................................................................................................................................................................................................TCAACAGGCATTTACTTCAACA...............................................................................................................................................................................................	22	1	30.00	30	2	0	0	0	0	28	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGATGAA.............................................................................................................................................................................................................................................	23	1	30.00	30	0	0	0	1	1	28	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGAT................................................................................................................................................................................................................................................	21	1	30.00	30	3	0	3	0	3	21	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCA..................................................................................................................................................................................................	20	1	30.00	30	1	0	0	0	0	29	0
...............................................................................................................................................................................................................CATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	22	1	29.00	29	1	1	1	0	0	26	0
.................................................................................................................................................................AAGTAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	23	1	29.00	29	1	0	1	0	0	27	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAA.................................................................................................................................................................................................	21	1	28.00	28	2	0	0	0	0	26	0
................................................................................................................................................................................................................ATCAACAGGCATTTACTTCAAC................................................................................................................................................................................................	22	1	28.00	28	8	17	0	1	0	2	0
..................................................................................................................................................................AGTAAATAGTCTGGATTGA.................................................................................................................................................................................................................................................	19	1	28.00	28	0	0	3	0	0	25	0
....................................................................................................................................................................TAAATAGTCTGGATTGATGA..............................................................................................................................................................................................................................................	20	1	24.00	24	0	0	0	0	2	22	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTT..................................................................................................................................................................................................................................................	21	1	23.00	23	0	0	4	0	0	19	0
.....................................................................................................................................................................AAATAGTCTGGATTGATG...............................................................................................................................................................................................................................................	18	1	20.00	20	1	0	0	0	1	18	0
...............................................................................................................................................................TAAAGTAAATAGTCTGGATTGATGAG.............................................................................................................................................................................................................................................	26	1	18.00	18	0	0	0	0	0	18	0

dgr_34

scaffold_15245:9744760-9744826 +

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.8	-28.7	-28.7