dgr_338

CDS [Dgri\GH16990-cds]; exon [dgri_GLEANR_16636:1]; exon [dgri_GLEANR_16636:2]; CDS [Dgri\GH16990-cds]; intron [Dgri\GH16990-in]

Name	Class	Family	Strand
(CGG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------------------------------------------################################################## AATTGCACTCAGTGGTAGTGGTGGTGGTGGGGGAGCCGGCAGCGGCATTGGTGGTGGCAGCATTGGCGGCCCCACTGGCAGCCTCAGCCTCGGCGGTGGCGGTGGCGGCGGCGGTGGTGGTGCTGGCATCGGTGTCGGTGTTGTCATGTTGCCACCCGGAGCCGGTTCAAATGCTGGCTTTAGCCAGAGCAATACAATCGGCGCACTGCAG ************************************************..(((((((((((.((((((((((((((..(((...((((((.((.((.((....)).)).)).))).)))...))).))))))..)).))))))))))))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
...........GTGGTAGTGGTGGTGGTGGGGGAG................................................................................................................................................................................	24	0	1	1.00	1	1	0
........................................AGCGGCCTTGGTGGTAGTAGCA.....................................................................................................................................................	22	3	1	1.00	1	1	0
............................................GCATTCGTGGTGGCAGTA.....................................................................................................................................................	18	2	6	0.33	2	2	0
.............................................CATTCGTGGTGGCAGTATG...................................................................................................................................................	19	3	16	0.06	1	1	0
.......................................................................................................................................................................CAAAGGCTGGTTTTAGGCA.........................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15110:19494401-19494611 +	dgr_338	AATTGC-----ACTCAGTGGT--------------------------------A----GT-G-GTGG---------TGGT---------------------------------------------------------------------GGGGGAGCCGGCAGCGGCATTGGTGGT----------------------------GGCAGCATTGGCGGCCCCAC----------------------------TGGCAGCCTCAGCCT---------------------------------C-------------------------GGC--------------------------------------------------------------------------GGTGGCGGTGGCGGCGGCGGTGGTGGTGCTGGCATCGGTGTCGGTGTTGTCATGTTG---------------------------------------------------------------------------------------------CCACCCGGAGCCG-GTTCAAATGCTGGCT-----------TTAGCCAGAG--------------------------------------------CAATACAATCGGCGCACTGCAG
droVir3	scaffold_13049:15079966-15080179 +		AATGGC-----ACTCAG------------------------------TGGT--GGG-GC-AG-GCGG---------TGGT---------------------------------------------------------------------GGGGGAGCCGGCAGCGGCATTGGTGGT----------------------------GGCAGCATTGGCGGCCCCAC----------------------------TGGCAGCCTCGG------------------------------------------------------------------------------------------------------------------------------------CGGCGGGATCGGGGGTGCTAGCGGTGTGGGTGGTGTTGGCGTTGGTGTCGGAGTTGTTATGCTG---------------------------------------------------------------------------------------------CCGCCCGGTGCCG-GCTCAAATGCTGGCA-----------TTAGCCATAG--------------------------------------------CAATACAACTGGCGCATTGCAG
droMoj3	scaffold_6680:21805520-21805739 -		AATGGC-----ACTTGG------------------------------TGGT--GGG-GC-AG-G---CGGCGGCGGAGGTGG---------------T---GGT---------------------------------------------AGTGGAGCCGGCAGCGGCATTGCTGGT----------------------------GGCAGCATTGGTGGCCCCGC---------------TAGCAGCA-G---------------CCTCGG------CGGCGGTGT---------------G------------------------------------------------------------------------------------------------------------------GGCGGGCTGGGCGGTGTTGGCGTCGGCGTCGGCGTTGTTATGCTA---------------------------------------------------------------------------------------------CCGCCAGGTGGCG-GCTCGCATGCCGGCA-----------TCAGCCATAG--------------------------------------------CAATACAACCGGCGCCCTGCAG
droWil2	scf2_1100000004510:1316472-1316647 -		AATGTC-----AGACAA--------------------------------------------------------------TGA---------AGGTGGT---GGTG---G------------------------------AAAT---TT-AGGTGTGCCAGTAGGAGGATTACTTGGAGGACCTTTACTCCCTGGCCCT------GGCAG-------------------------------------------TGGCGG------CGG---------------------------------T---G---------G---------------------------------------------------------------------------------CGGTGGCAGCGGCGGTG---------CTGGTGGTGGTGGTGGTGGTAATGGCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------GAGGCAACTTGGCACTTGGTCT-------------------AAGTGCTG
dp5	XR_group8:3763302-3763473 +		AATGGC-----ACTCGCTGGG--------------------------------T----CT-T-CCGG---------TGGT---------------------------------------------------------------------GGTGGAGCCGGCGGCATCCCAGGTGGC----------------------------GGCAGCATTGGCGGCCCCGC----------------------------TGGTGGTTCCACATC---------------------------------C-------------------------AATGC-----------------------------------------------------------------CGGTG---------GCATCGGCGCTG------GCGTTGGCGTTGGCGTTGGTG----------------------------------------------------------------------------------------------------------------------------------GCA-----------TTAGCCAAAGCATCACCACCA-----------------------------------------CCGGTGCACTACAG
droPer2	scaffold_7899:307-470 -		TCAGC---GGTG-G------TGGCAG--------------------------------------------------CGGTGG---------------------------------------------------------------------CGGCAGCGGTGGCGGCAGCGGTGGC----------------------------GGCAGCGGTGGTGGCAGCGG---------------CGGCAGAA-GTACTGGCAG----------------------------------------------------------------------------CGGTG-----------------------------------------------------------------------GTGGCAGCGGCGGCAGAAGTACTGG------------------------------------------------------------------------------CAGCGGTGGTGGCA----------------------------------------------------GCG-----------GCAGCGG------------CA------GAGGTG-CATGGAGCCT-------------------------GCTCAAA
droAna3	scaffold_13337:19418477-19418625 -		GTTGCG---CCA-C------CAG------------CAAATGATGC--AGATGCAGGGCATGG-G---TGGTGGCGGCGGCGG---------------G---GGC---------------------------------------------ATGGGAGCCGGC-------------------------------------------------------------------------------------------------------CC---CCAGCAG--GCA-GGCGGCGC-TGGTGG---C---G---------------------------------------------------------------------------------------------------------TTGGTGGCGGCGGAGGAGGCGTTGGCGTTGGTGTGGGTGGCATGGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC
droBip1	scf7180000396427:2555475-2555672 -		GCGGCA---ACA-A------CCGCAA--------------------------------------------------TGGCGG---------AGGCGC---------------------------------------------------------------TGGAGGCGCTGCCGGT----------------------------GGAGCCACTGGGGGCAACGGTGGAGGCTTCGGTGCTGGCGGTGG-------------------------------------------TG---------------------------------------------------------------------------------------------------------------------GTGGCGGCGGTGGTGGCCGCGG------GAACGCCGGAGGA---------------------------------------------------CGTGGCGGTGCTGATCGCTTCGGCG---GAGC------------------------TGGCGGCG-GTGCTGC--------------------------------------TGCAGGTGCTG-------GT---ATGAG-CCAGCGCGACA-----------------
droKik1	scf7180000302398:417602-417809 -		ACTCGG---C-GAATAG------------------CAATGGACC----------------CG-G---CAGCGCGGGCAGCGG---------GGGCAGT---GGCG---------------------------------------------GTGGCACCGGCGGCAACAGTGGTCCT----------------------------ACCAGCACAGGTGGACCCAA---------------CAGCGGCG-G---------------CGGCGG------CGGCGGTGG---------------CGGTGGTGGCAATCC-------------TAACAGCAATAG---T-------------------AAT------------------------GCTGCT-------------------GCCGCCC------T------------------------------------------------------------------------------------------------------------------------------------------GCTT-AATGCCGGCA-----------GTAACAGCAA---------CAGTGGCGTTG---------------------------------------GCAGCGG
droFic1	scf7180000452527:7917-8075 +		CTCGGC-----GG-------TGGTGGTGGTGGCGGT-----------------------------------------------------------------------------------------------------------------GT---------CTGCCTCCTCGGCGGC----------------------------GGTGGTGTTGGCGTCCTCGG------------------CCGTG-TCCCTTTCAT------------------------------------------C-------------------------GAC--------------------------------------------------------------------------GGCGGCGGTGGTGGTGGCGTTGGTGTCCTTGGTGGCGGCGTCGGCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------TCGGCGACCTTGCGCTT-GCGC-------------------AGCTGCTG
droEle1	scf7180000491330:27850-28033 +		ACCAT---GGTG-G------TGGTGA--------------------------------------------------TGGTGAGTGTGGCAGCGGTGACGGCGATC---G---------------------------------------------TGGTGGTGGCGGTGGTGGTGGC----------------------------GTCGGCGTCGGCGAACGTGG---------------TGGCGGTA-G---------------CGGCGG------CTGCGTTAC---------------CGACAGCGGCTGCGC-------------TGCCGACGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCGCTGCTGGTG-----------GCGACTGCGGT------GCCGACAGCGGCG---------------------------------------ACTGCGG
droRho1	scf7180000780254:58612-58774 +		ATTCG-----------GCGGT--------------------------------A----GC-T-CCGG---------CGGCGG---------ATTCGGA---GGCG---------------------------------------------------------GTGGCTTCGGCGGC----------------------------GGCAGCAGCGGCGGAGGCG---GAGGCTTCAGCAGCGGCGGAGG-------------------------------------------CGGTGGCTTC---T---------------------------------------------------------------------------------------------------------------CCAGCGGCGGTGGTGGAGGCTTCGGA------------------------------------------------------------GGTGGATTCGGAGGCGGCTCCGGCG-------------------------------------------------GCG-----------------------------------------GCG-----------------------------------------GTGGC
droBia1	scf7180000301468:767298-767531 +		CGGT-------G-------GTGGCTCAGGGGGCGGAGTTTCGCCCAACGGC--GGG-GC-AG-G------------------------------------------------------------------------------------------------------------AGGC----------------------------GGCGGGGGCG------------GTGGCTCCTCCGCCAGCAGCGT-------------------------------------------GAGCAGCCTT---T----------------------CCAG---CGGCA-----------------------------------------------------------------------GTGGCGGCTCCGGCGGTCAGGTGGG------------------------------------------------------------------------------CAACGGTCTGAGCAACGGAACGAACGGCATCGCCCCACTGCCGCCGGGC--CAGCTGTACATCCCGTATCCGGGCGAGTTTTATCCGCCG--------------------------------------------GAATACTAC-ATCGCACCGCA-
droTak1	scf7180000415364:74444-74639 +		AATGGT-----AG-------TAATGGTGGCCCCGGT-----------------------------GC---------CATT---------------------------------------------------------------------GGAACCATCGGCATGGGCAGCGGATTG----------------------------GGCAGCATGGGCGG----------------------------------------------------------------------------------C---G---------G---------------------------------------------------------------------------------TGGAGGCGGCGGAGGAG---------CTGGTGGCGG------GAATAATGGTGGA----TCCGGCACAAATGGCGGCCTCCATCATCCATCGATGGCCGCTGCAGCAGCCAATATGGCCGCCATGCAA---------------------------------------------------------------------------------------------CAGGCG---------------------------------------GCGGCGG
droEug1	scf7180000409110:585822-585996 +		AACGGA-----AG-------CGGAAATGGCAACGGT---TCGTCGGC------A----AC-CTCAGGCGGCGGCGGCGGCTC----------------------------------------------------------------------------------------------------------------------------GAGCGGCGGTGGCTCAA-------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------CGGCGGCAACGGTGGTACAAATGGCAGTGGTGGTGCCTGCATCTGTGCCGGCGGCATTGCCCTC---------------------------------------------------------------------------------------------TCCACCGGATCCG-GTTCAAACTCTGGCT-----------CCGG-------------------------------------------------------------------ATCAA
dm3	chrX:7935555-7935757 -		AGTGGC-----GG-------TGGTGG---CA---------------------------C-CG----C---------CAACAG---------CAACAGT---GGCGGCGG------------------------------CGGCGGTGGCGGCGGACC-------------------------AGCGCTGCTTAATGCTGGCAGCAATAGCAATAGTGGTGTTGG----------------------------CAGTGGCGGCGCCG---C------------------------------C-------------------------AGC------AGCAACAGCAATAGCAGCGTCGGCGGCA-----------------------------------------------TTGTTGGCAGCGGCGGACC---------------------------------------------------------------------------------------------------------------------------------------TG-GCTCCAATA-----------------GTCAGGGCAG------------CAGTGGAG---------------------------------------GCGGCGG
droSim2	3l:2807854-2808015 +		TCGTT---GGCA-G------CGTTGG--------------------------------------------------TGGCGG----------------------------------------------------------------------------------------------------------------------------GGGCGTCGGTGGTGCCAG----------------------------CAGCCA------------------------GTCGATTTCGGGCGGTGTA---C---------CCNNNNNNNNNN---GG---GGGC-----------------------------------------------------------------G------TCGGTGGTGCCAGCAGCCAGT-------CGATTTCGG--------------------------------------------------------------------G----------------------------------------------------CGGTGTACCCACCC-----------ACAGCCAGAG--------------------------------------------CAACACCACCGGCGCCCTGCAG
droSec2	scaffold_44:19561-19764 -		CAAT-------A-------GT--------------------------------G----GT-G-TTGG---------CAGC---------------------------------------------------------------------GGCGGCGCCGCCAGCAGCAACAGCAAC----------------------------AGCAGCGTCGGCGGCATTGT----------------------------TGGCAGCGGCGGACC---------------------------------C-------------------------GGCTC------C----------------------------AATAGTCAGGGCAGCAGCGGAGGCGG----CGGC---------------GGAGGGCCAGCCAGTGGCGGCATGGGCAGCGGCGCCCTCG---------------------------------------------------------------------ACT---ACGG-------------------TCAACAGGTGGCG-GTGCTAACACAGGTG--------------------------------------GCG--------------------------------------GCCAACGC
droYak3	2R:639447-639634 -		CATCCTGGGGTG-G------CGGCGT----------------------------------CG-G---TGGTGCTGACGGCGG---------TGGCGGT---GGTG---G---------------------------------------------TGGCTGCGGCTGTGCCGGTGGC----------------------------GGCGGCAACGGCGGTTGCCG----------------------------TTGCGGCTGCGGCG---T------------------------------C-------------------------GGT--------------------------------------------------------------------------GGCTGCGGCTGCTGCTGCGTCGGTGGTGGCTGCGACTGCGCCGGTGGCG-------------------------------------------------------------------------------------------------------------------------ACTCTCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------
droEre2	scaffold_4784:3527282-3527501 +		ACTCCT-----TCATGG------------------------------AGCCGCAGA-------GCAATGCCGCCGCAGCTG----------------CAGCAGCC---GCTGCTGCCAGTTGCAATGCTGCCGCTGCTGCGGCA-----GCCGCTGCAGTTGCA----------------------------------------------------GGTGGCAA----------------------------------------------------------TCAGGGCTCGAATGGCAAT---G---------C-------------CAGTGGCAATGG---T-------------------GGT------------------------GCTGTT-------------------GGGGCGC------CGGCTGGTAATGGCAACGG-------------------------------------------------------------------------------------------------------------------------TGGGAATCCTGGCC-----------AGAACAACAGC------AACAATAGCGGCA---------------------------------------ACAACAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

AATTGC-----ACTCAGTGGT--------------------------------A----GT-G-GTGG---------TGGT---------------------------------------------------------------------GGGGGAGCCGGCAGCGGCATTGGTGGT----------------------------GGCAGCATTGGCGGCCCCAC----------------------------TGGCAGCCTCAGCCT---------------------------------C-------------------------GGC--------------------------------------------------------------------------GGTGGCGGTGGCGGCGGCGGTGGTGGTGCTGGCATCGGTGTCGGTGTTGTCATGTTG---------------------------------------------------------------------------------------------CCACCCGGAGCCG-GTTCAAATGCTGGCT-----------TTAGCCAGAG--------------------------------------------CAATACAATCGGCGCACTGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................GTGGT--------------------------------A----GT-G-GTGG---------TGGT---------------------------------------------------------------------GGGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0

droVir3

AATGGC-----ACTCAG------------------------------TGGT--GGG-GC-AG-GCGG---------TGGT---------------------------------------------------------------------GGGGGAGCCGGCAGCGGCATTGGTGGT----------------------------GGCAGCATTGGCGGCCCCAC----------------------------TGGCAGCCTCGG------------------------------------------------------------------------------------------------------------------------------------CGGCGGGATCGGGGGTGCTAGCGGTGTGGGTGGTGTTGGCGTTGGTGTCGGAGTTGTTATGCTG---------------------------------------------------------------------------------------------CCGCCCGGTGCCG-GCTCAAATGCTGGCA-----------TTAGCCATAG--------------------------------------------CAATACAACTGGCGCATTGCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCGGAGTTGTTAT.....................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAC----------------------------TGGCAGCCTCGG------------------------------------------------------------------------------------------------------------------------------------CGG..............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGCGTTGGTGTCGG..............................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATGGC-----ACTTGG------------------------------TGGT--GGG-GC-AG-G---CGGCGGCGGAGGTGG---------------T---GGT---------------------------------------------AGTGGAGCCGGCAGCGGCATTGCTGGT----------------------------GGCAGCATTGGTGGCCCCGC---------------TAGCAGCA-G---------------CCTCGG------CGGCGGTGT---------------G------------------------------------------------------------------------------------------------------------------GGCGGGCTGGGCGGTGTTGGCGTCGGCGTCGGCGTTGTTATGCTA---------------------------------------------------------------------------------------------CCGCCAGGTGGCG-GCTCGCATGCCGGCA-----------TCAGCCATAG--------------------------------------------CAATACAACCGGCGCCCTGCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................AG-G---CGGCGGCGGAGGTGG---------------T---GGT---------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
...........................................................................GAGGTGG---------------T---GGT---------------------------------------------AGTGGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	1	0	0	0	0	0

droWil2

AATGTC-----AGACAA--------------------------------------------------------------TGA---------AGGTGGT---GGTG---G------------------------------AAAT---TT-AGGTGTGCCAGTAGGAGGATTACTTGGAGGACCTTTACTCCCTGGCCCT------GGCAG-------------------------------------------TGGCGG------CGG---------------------------------T---G---------G---------------------------------------------------------------------------------CGGTGGCAGCGGCGGTG---------CTGGTGGTGGTGGTGGTGGTAATGGCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------GAGGCAACTTGGCACTTGGTCT-------------------AAGTGCTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................GA---------AGGTGGT---GGTG---G------------------------------AAAT---TT-AGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................GACCTTTACTCCCTGGCCCT------GGCAG-------------------------------------------T................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGGTG---------CTGGTGGTGG.............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATGGCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------TG------GAGGC............................................	18	1	1.00	1	0	0	1	0	0
..............CAA--------------------------------------------------------------TGA---------AGGTGGT---GGTG---G------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...GTC-----AGACAA--------------------------------------------------------------TGA---------AGGTGGT---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
AATGTC-----AGACAA--------------------------------------------------------------TGA---------AGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
............................................................................................................................................AAT---TT-AGGTGTGCCAGTAGGAGGATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................TCCCTGGCCCT------GGCAG-------------------------------------------TGGCGG------CGG---------------------------------.................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................G-------------------------------------------TGGCGG------CGG---------------------------------T---G---------G---------------------------------------------------------------------------------CGGTGGCAG........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0

dp5

AATGGC-----ACTCGCTGGG--------------------------------T----CT-T-CCGG---------TGGT---------------------------------------------------------------------GGTGGAGCCGGCGGCATCCCAGGTGGC----------------------------GGCAGCATTGGCGGCCCCGC----------------------------TGGTGGTTCCACATC---------------------------------C-------------------------AATGC-----------------------------------------------------------------CGGTG---------GCATCGGCGCTG------GCGTTGGCGTTGGCGTTGGTG----------------------------------------------------------------------------------------------------------------------------------GCA-----------TTAGCCAAAGCATCACCACCA-----------------------------------------CCGGTGCACTACAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................CT-T-CCGG---------TGGT---------------------------------------------------------------------GGTGGAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................T-T-CCGG---------TGGT---------------------------------------------------------------------GGTGGAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCGGCGCTG------GCGTTGGCGTTGGC...................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TCAGC---GGTG-G------TGGCAG--------------------------------------------------CGGTGG---------------------------------------------------------------------CGGCAGCGGTGGCGGCAGCGGTGGC----------------------------GGCAGCGGTGGTGGCAGCGG---------------CGGCAGAA-GTACTGGCAG----------------------------------------------------------------------------CGGTG-----------------------------------------------------------------------GTGGCAGCGGCGGCAGAAGTACTGG------------------------------------------------------------------------------CAGCGGTGGTGGCA----------------------------------------------------GCG-----------GCAGCGG------------CA------GAGGTG-CATGGAGCCT-------------------------GCTCAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................TGGCAG--------------------------------------------------CGGTGG---------------------------------------------------------------------CGGCAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGG------------------------------------------------------------------------------CAGCGGTGGTGGCA----------------------------------------------------GCG-----------G...........................................................................	24	20	0.10	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGCA----------------------------------------------------GCG-----------GCAGCGG------------CA------GAGG.............................................	24	20	0.10	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................GTACTGGCAG----------------------------------------------------------------------------CGGTG-----------------------------------------------------------------------GTGG...............................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..........TG-G------TGGCAG--------------------------------------------------CGGTGG---------------------------------------------------------------------CGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
....................TGGCAG--------------------------------------------------CGGTGG---------------------------------------------------------------------CGGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCA----------------------------------------------------GCG-----------GCAGCGG------------CA------GAG..............................................	20	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGG------------------------------------------------------------------------------CAGCGGTGGTGG................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-----------GCAGCGG------------CA------GAGGTG-CATGT.....................................	22	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGG------------------------------------------------------------------------------CAGCGGTGGTGGC...............................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGG------------------------------------------------------------------------------CAGCGGTGGTGGCA----------------------------------------------------GCG-----------GCA.........................................................................	26	20	0.05	1	0	1	0	0	0	0
....................TGGCAG--------------------------------------------------CGGTGG---------------------------------------------------------------------CGGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGG------------CA------GAGGTG-CATGGAG...................................	21	20	0.05	1	0	0	1	0	0	0

droAna3

GTTGCG---CCA-C------CAG------------CAAATGATGC--AGATGCAGGGCATGG-G---TGGTGGCGGCGGCGG---------------G---GGC---------------------------------------------ATGGGAGCCGGC-------------------------------------------------------------------------------------------------------CC---CCAGCAG--GCA-GGCGGCGC-TGGTGG---C---G---------------------------------------------------------------------------------------------------------TTGGTGGCGGCGGAGGAGGCGTTGGCGTTGGTGTGGGTGGCATGGTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGGCGGAGGAGGCG..............................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGGCGGAGGAGGC...............................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGGCGGAGGAGGCG..............................................................................................................................................................................................................................................	18	6	0.17	1	0	0	0	0	0	1

droBip1

GCGGCA---ACA-A------CCGCAA--------------------------------------------------TGGCGG---------AGGCGC---------------------------------------------------------------TGGAGGCGCTGCCGGT----------------------------GGAGCCACTGGGGGCAACGGTGGAGGCTTCGGTGCTGGCGGTGG-------------------------------------------TG---------------------------------------------------------------------------------------------------------------------GTGGCGGCGGTGGTGGCCGCGG------GAACGCCGGAGGA---------------------------------------------------CGTGGCGGTGCTGATCGCTTCGGCG---GAGC------------------------TGGCGGCG-GTGCTGC--------------------------------------TGCAGGTGCTG-------GT---ATGAG-CCAGCGCGACA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTCGG---C-GAATAG------------------CAATGGACC----------------CG-G---CAGCGCGGGCAGCGG---------GGGCAGT---GGCG---------------------------------------------GTGGCACCGGCGGCAACAGTGGTCCT----------------------------ACCAGCACAGGTGGACCCAA---------------CAGCGGCG-G---------------CGGCGG------CGGCGGTGG---------------CGGTGGTGGCAATCC-------------TAACAGCAATAG---T-------------------AAT------------------------GCTGCT-------------------GCCGCCC------T------------------------------------------------------------------------------------------------------------------------------------------GCTT-AATGCCGGCA-----------GTAACAGCAA---------CAGTGGCGTTG---------------------------------------GCAGCGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCGGC-----GG-------TGGTGGTGGTGGCGGT-----------------------------------------------------------------------------------------------------------------GT---------CTGCCTCCTCGGCGGC----------------------------GGTGGTGTTGGCGTCCTCGG------------------CCGTG-TCCCTTTCAT------------------------------------------C-------------------------GAC--------------------------------------------------------------------------GGCGGCGGTGGTGGTGGCGTTGGTGTCCTTGGTGGCGGCGTCGGCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------CC------TCGGCGACCTTGCGCTT-GCGC-------------------AGCTGCTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACCAT---GGTG-G------TGGTGA--------------------------------------------------TGGTGAGTGTGGCAGCGGTGACGGCGATC---G---------------------------------------------TGGTGGTGGCGGTGGTGGTGGC----------------------------GTCGGCGTCGGCGAACGTGG---------------TGGCGGTA-G---------------CGGCGG------CTGCGTTAC---------------CGACAGCGGCTGCGC-------------TGCCGACGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCGCTGCTGGTG-----------GCGACTGCGGT------GCCGACAGCGGCG---------------------------------------ACTGCGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTCG-----------GCGGT--------------------------------A----GC-T-CCGG---------CGGCGG---------ATTCGGA---GGCG---------------------------------------------------------GTGGCTTCGGCGGC----------------------------GGCAGCAGCGGCGGAGGCG---GAGGCTTCAGCAGCGGCGGAGG-------------------------------------------CGGTGGCTTC---T---------------------------------------------------------------------------------------------------------------CCAGCGGCGGTGGTGGAGGCTTCGGA------------------------------------------------------------GGTGGATTCGGAGGCGGCTCCGGCG-------------------------------------------------GCG-----------------------------------------GCG-----------------------------------------GTGGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGGT-------G-------GTGGCTCAGGGGGCGGAGTTTCGCCCAACGGC--GGG-GC-AG-G------------------------------------------------------------------------------------------------------------AGGC----------------------------GGCGGGGGCG------------GTGGCTCCTCCGCCAGCAGCGT-------------------------------------------GAGCAGCCTT---T----------------------CCAG---CGGCA-----------------------------------------------------------------------GTGGCGGCTCCGGCGGTCAGGTGGG------------------------------------------------------------------------------CAACGGTCTGAGCAACGGAACGAACGGCATCGCCCCACTGCCGCCGGGC--CAGCTGTACATCCCGTATCCGGGCGAGTTTTATCCGCCG--------------------------------------------GAATACTAC-ATCGCACCGCA-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATGGT-----AG-------TAATGGTGGCCCCGGT-----------------------------GC---------CATT---------------------------------------------------------------------GGAACCATCGGCATGGGCAGCGGATTG----------------------------GGCAGCATGGGCGG----------------------------------------------------------------------------------C---G---------G---------------------------------------------------------------------------------TGGAGGCGGCGGAGGAG---------CTGGTGGCGG------GAATAATGGTGGA----TCCGGCACAAATGGCGGCCTCCATCATCCATCGATGGCCGCTGCAGCAGCCAATATGGCCGCCATGCAA---------------------------------------------------------------------------------------------CAGGCG---------------------------------------GCGGCGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AACGGA-----AG-------CGGAAATGGCAACGGT---TCGTCGGC------A----AC-CTCAGGCGGCGGCGGCGGCTC----------------------------------------------------------------------------------------------------------------------------GAGCGGCGGTGGCTCAA-------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------CGGCGGCAACGGTGGTACAAATGGCAGTGGTGGTGCCTGCATCTGTGCCGGCGGCATTGCCCTC---------------------------------------------------------------------------------------------TCCACCGGATCCG-GTTCAAACTCTGGCT-----------CCGG-------------------------------------------------------------------ATCAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGTGGC-----GG-------TGGTGG---CA---------------------------C-CG----C---------CAACAG---------CAACAGT---GGCGGCGG------------------------------CGGCGGTGGCGGCGGACC-------------------------AGCGCTGCTTAATGCTGGCAGCAATAGCAATAGTGGTGTTGG----------------------------CAGTGGCGGCGCCG---C------------------------------C-------------------------AGC------AGCAACAGCAATAGCAGCGTCGGCGGCA-----------------------------------------------TTGTTGGCAGCGGCGGACC---------------------------------------------------------------------------------------------------------------------------------------TG-GCTCCAATA-----------------GTCAGGGCAG------------CAGTGGAG---------------------------------------GCGGCGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATA-----------------GTCAGGGCAG------------CAGTGGAG---------------------------------------.......	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATA-----------------GTCAGGGCAG------------CAGTGGA...............................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGCGTCGGCGGCA-----------------------------------------------TTGTTGGC...........................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGCAGCGGCGGACC---------------------------------------------------------------------------------------------------------------------------------------TG-......................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................G---------CAACAGT---GGCGGCGG------------------------------CGGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
..........................................................................................................................................................................................................................................................................................................................................................TAGCAGCGTCGGCGGCA-----------------------------------------------TTGTTGG............................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AACAGCAATAGCAGCGTCGGCGGC...................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................................................GCAATAGCAGCGTCGGCGT....................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................AACAG---------CAACAGT---GGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................C---------CAACAG---------CAACAGT---GGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AG---------CAACAGT---GGCGGCGG------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GCGGCGG------------------------------CGGCGGTGGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCGTT---GGCA-G------CGTTGG--------------------------------------------------TGGCGG----------------------------------------------------------------------------------------------------------------------------GGGCGTCGGTGGTGCCAG----------------------------CAGCCA------------------------GTCGATTTCGGGCGGTGTA---C---------CCNNNNNNNNNN---GG---GGGC-----------------------------------------------------------------G------TCGGTGGTGCCAGCAGCCAGT-------CGATTTCGG--------------------------------------------------------------------G----------------------------------------------------CGGTGTACCCACCC-----------ACAGCCAGAG--------------------------------------------CAACACCACCGGCGCCCTGCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCGGCGCCCTG...	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCAGT-------CGATTTCGG--------------------------------------------------------------------G----------------------------------------------------C....................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................G----------------------------CAGCCA------------------------GTCGATTTCGGGC......................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CAAT-------A-------GT--------------------------------G----GT-G-TTGG---------CAGC---------------------------------------------------------------------GGCGGCGCCGCCAGCAGCAACAGCAAC----------------------------AGCAGCGTCGGCGGCATTGT----------------------------TGGCAGCGGCGGACC---------------------------------C-------------------------GGCTC------C----------------------------AATAGTCAGGGCAGCAGCGGAGGCGG----CGGC---------------GGAGGGCCAGCCAGTGGCGGCATGGGCAGCGGCGCCCTCG---------------------------------------------------------------------ACT---ACGG-------------------TCAACAGGTGGCG-GTGCTAACACAGGTG--------------------------------------GCG--------------------------------------GCCAACGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................GGCATTGT----------------------------TGGCAGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---ACGG-------------------TCAACAGGTGGC........................................................................................................	18	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCGGCATGGGCAGCGGCG............................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG---------------------------------------------------------------------ACT---ACGG-------------------TCAACAGGTGGCG-GTG...................................................................................................	26	1	1.00	1	1	0	0	0
.AAT-------A-------GT--------------------------------G----GT-G-TTGG---------CAGC---------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------ACT---ACGG-------------------TCAACAGGTGGCG-GT....................................................................................................	23	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGCCCTCG---------------------------------------------------------------------ACT---ACGG-------------------T...................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................GGCATTGT----------------------------TGGCAGCGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0

droYak3

CATCCTGGGGTG-G------CGGCGT----------------------------------CG-G---TGGTGCTGACGGCGG---------TGGCGGT---GGTG---G---------------------------------------------TGGCTGCGGCTGTGCCGGTGGC----------------------------GGCGGCAACGGCGGTTGCCG----------------------------TTGCGGCTGCGGCG---T------------------------------C-------------------------GGT--------------------------------------------------------------------------GGCTGCGGCTGCTGCTGCGTCGGTGGTGGCTGCGACTGCGCCGGTGGCG-------------------------------------------------------------------------------------------------------------------------ACTCTCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------	25	12	10.00	120	0	81	39	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------	27	10	1.20	12	0	11	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTGCGCCGGTGGCG-------------------------------------------------------------------------------------------------------------------------ACTCTC..........................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGGTGGCG-------------------------------------------------------------------------------------------------------------------------ACTCTCGCT-----------TTT.........................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................T----------------------------------CG-G---TGGTGCTGACGGCGG---------TGGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................TGGTGCTGACGGCGG---------TGGCGGT---GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------	24	12	0.92	11	0	11	0	0	0	0	0	0	0	0	0
.......................................................................................................TG---G---------------------------------------------TGGCTGCGGCTGTGCCGGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------	21	16	0.56	9	0	2	7	0	0	0	0	0	0	0	0
................................................................................................GT---GGTG---G---------------------------------------------TGGCTGCGGCTGTGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................T---GGTG---G---------------------------------------------TGGCTGCGGCTGTGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................GT---GGTG---G---------------------------------------------TGGCTGCGGCTGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
..TCCTGGGGTG-G------CGGCGT----------------------------------CG-G---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	16	0.38	6	0	6	0	0	0	0	0	0	0	0	0
.......................................................................................................TG---G---------------------------------------------TGGCTGCGGCTGTGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGCGGCTGCGGCG---T------------------------------C-------------------------GGT--------------------------------------------------------------------------GGCTGCGG..................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GGCTGCGGCTGTGCCGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAAC.............	24	12	0.33	4	0	3	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTGCGGCTGTGCCGGTGGC----------------------------GGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGGCTGCGGCTGTGCCGGTGGC----------------------------GGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGGCTGCGGCTGTGCCGGTGGC----------------------------GGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..TCCTGGGGTG-G------CGGCGT----------------------------------CG-G---TGGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.....TGGGGTG-G------CGGCGT----------------------------------CG-G---TGGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.....TGGGGTG-G------CGGCGT----------------------------------CG-G---TGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAAC.............	26	10	0.30	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................TG---G---------------------------------------------TGGCTGCGGCTGTGCCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGCGACTGCGCCGGTGGCG-------------------------------------------------------------------------------------------------------------------------................................................................................................	23	8	0.25	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGCCG--------------------------------------------CGACGAAACC------------	19	17	0.24	4	0	1	3	0	0	0	0	0	0	0	0
.............G------CGGCGT----------------------------------CG-G---TGGTGCTGACGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------	26	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
..TCCTGGGGTG-G------CGGCGT----------------------------------CG-G---T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCT-----------TTTTCCGCCG--------------------------------------------CGACG.................	20	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
.........................T----------------------------------CG-G---TGGTGCTGACGGCGG---------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------TTTTCCGCCG--------------------------------------------CGACGAAAC.............	20	16	0.13	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------TTTTCCGCCG--------------------------------------------CGACGAAACC------------	22	16	0.13	2	0	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCTGCGACTGCGCCGGTGGC..........................................................................................................................................................................................................................	24	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGCGACTGCGCCGGTGGC..........................................................................................................................................................................................................................	22	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCGACTGCGCCGGTGG...........................................................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTGCTGCTGCGTCGGGA.................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0
..TCCTGGGGTG-G------CGGCGT----------------------------------CG-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	16	0.13	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCTGCGACTGCGCCGGTGG...........................................................................................................................................................................................................................	23	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGCGACTGCGCCGGTGGCG-------------------------------------------------------------------------------------------------------------------------TA..............................................................................................	25	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------------------------------------------------------------------------------------------------------------------------ACTCTCGCT-----------TTTTCCGCCG--------------------------------------------CGACG.................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------------------------------------------------------------------------------------ACTCTCGCT-----------TTTTCCGCCG--------------------------------------------CGACG.................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCCG--------------------------------------------CGACGAAACC------------	18	19	0.11	2	0	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGCT-----------TTTTCCGCCG--------------------------------------------CGACGAAA..............	25	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------------------------------------------------------------------------------------------------------------------------ACTCTCGCT-----------TTTTCCG.....................................................................	18	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------TTTTCCGCCG--------------------------------------------CGACGAAA..............	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1
CATCCTGGGGTG-G------CGGCGT----------------------------------CG-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCGCCG--------------------------------------------CGACGAAACC------------	20	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..TCCTGGGGTG-G------CGGCGT----------------------------------CT-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..TCCTGGGGTG-G------CGGCGT----------------------------------CG-T---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GCGGCG---T------------------------------C-------------------------GGT--------------------------------------------------------------------------GGCTGCGGC.................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TGCGGCG---T------------------------------C-------------------------GGT--------------------------------------------------------------------------GGCTGCGGC.................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

ACTCCT-----TCATGG------------------------------AGCCGCAGA-------GCAATGCCGCCGCAGCTG----------------CAGCAGCC---GCTGCTGCCAGTTGCAATGCTGCCGCTGCTGCGGCA-----GCCGCTGCAGTTGCA----------------------------------------------------GGTGGCAA----------------------------------------------------------TCAGGGCTCGAATGGCAAT---G---------C-------------CAGTGGCAATGG---T-------------------GGT------------------------GCTGTT-------------------GGGGCGC------CGGCTGGTAATGGCAACGG-------------------------------------------------------------------------------------------------------------------------TGGGAATCCTGGCC-----------AGAACAACAGC------AACAATAGCGGCA---------------------------------------ACAACAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGG-------------------------------------------------------------------------------------------------------------------------TGGGAATCCTGGCC-----------A...........................................................................	21	1	2.00	2	1	0	0	0	1	0	0
........................................................................................................................................................................................................................GGTGGCAA----------------------------------------------------------TCAGGGCTCGAAT......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................AA----------------------------------------------------------TCAGGGCTCGAATGGCAAT---G---------C-------------CAGT.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG-------------------------------------------------------------------------------------------------------------------------TGGGAATCCTGGCC-----------AGAA........................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................CGCAGA-------GCAATGCCGCCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------AACAATAGCGGCA---------------------------------------ACAACAG	23	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................AA----------------------------------------------------------TCAGGGCTCGAATGGCAAT---G---------C-------------CA...................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
......................................................................CGCCGCAGCTG----------------CAGCAGCC---GCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................AT---G---------C-------------CAGTGGCAATGG---T-------------------GGT------------------------GCTGT..................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGG-------------------------------------------------------------------------------------------------------------------------TGGGAATCCTGGCC-----------............................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................CAATGCCGCCGCAGCTG----------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACAACAGC------AACAATAGCGGC...............................................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACAGC------AACAATAGCGGC...............................................	22	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................G---T-------------------GGT------------------------GCTGTT-------------------GGGGCGC------CGGCTG...........................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................GCA----------------------------------------------------GGTGGCAA----------------------------------------------------------TCAGGGCTCGA........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................AA----------------------------------------------------------TCAGGGCTCGAATGGCA..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0

dgr_338

scaffold_15110:19494451-19494561 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads