dgr_333

CDS [Dgri\GH16868-cds]; CDS [Dgri\GH16868-cds]; exon [dgri_GLEANR_16525:6]; exon [dgri_GLEANR_16525:5]; intron [Dgri\GH16868-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------------------------------------################################################## AACAACAGACGTCCATTGAAAGTCAGTCCAATAGCACAAACAATGCGTCAGTGCAACAATCATCACAACAACAACAACAACAGCAGCAGCAGCAACTCCAGCTGCAGCAGCAGCAGCAGCAGCAACATGGCCATAATCAGTACGCGCCAGCTGCCGCCAAACCCTATTTAAGCCATGCTGGCAAAAATAA ************************************************.............................................(((((..(((.((.((....)).)).)))...)))........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
............................................................................................................................ACATGGCCATAATCAGTACGCG............................................	22	0	1	1.00	1	1	0
..................................................................................GCAGCCGCAGTAATTCCAGCT.......................................................................................	21	3	17	0.35	6	0	6
.........................................................................ACAACAACAGCAGCAGCAGCAACTCC...........................................................................................	26	0	3	0.33	1	1	0
.........................................................................................................................................AACTACGTGCCAGCTGCCGC.................................	20	3	7	0.14	1	1	0
.................................................................................AGCAGCAGCGGTAATTCCAGCT.......................................................................................	22	3	14	0.14	2	0	2
..................................................................................GCAGCAGCGGTAATTCCAGCT.......................................................................................	21	3	20	0.10	2	0	2
.................................................................................AGCAGCCGCGGCAATTCCAGCT.......................................................................................	22	3	13	0.08	1	0	1
...............................................................................ACAGCAGCAGCAGCAACTC............................................................................................	19	0	14	0.07	1	1	0
...................................................................ACAACAACAACAACAGCAGCAGC....................................................................................................	23	0	20	0.05	1	1	0

TTGTTGTCTGCAGGTAACTTTCAGTCAGGTTATCGTGTTTGTTACGCAGTCACGTTGTTAGTAGTGTTGTTGTTGTTGTTGTCGTCGTCGTCGTTGAGGTCGACGTCGTCGTCGTCGTCGTCGTTGTACCGGTATTAGTCATGCGCGGTCGACGGCGGTTTGGGATAAATTCGGTACGACCGTTTTTATT ************************************************.............................................(((((..(((.((.((....)).)).)))...)))........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body
............................................................................................................................................................GGTTTTGGAGTAATTCGGTA..............	20	3	17	0.06	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15110:17214453-17214642 +	dgr_333	AAC-----A-ACAGA-----------------------------------------------CG--------TCCA--TTGAAAGTCAGTCCAATA-----------------GCA-CAAA-----CAATGCGTCAGTGCAACAA-TCATCA-----------------------------------------------------------------------------------------CAACAA---------CA---------A---CAACAA---CA---------------GCAGCAG-CAGCAACT---CCAGCTGCAG-------CAG---------------------------------------------------------CAGCAGCA-------------------------------------------------------------------------------------------------------GCAGCAAC------A----------------------------------------TGGCCATAATCAGTACGCGCCAGCTGCCGCCAAACCCTATT-TAAGCCA--TGC-------------------------------------------------TGG------------CAAAAATAA
droVir3	scaffold_13049:15441418-15441589 +		AAC-----A-ACAGA-----------------------------------------------TG--------TCCA--CTGAAAATCAGTCAAATA-----------------GCA-CAAA-----CAATGCATCTGTG---------------------------------------------------------------------------------------------------------------------CTGTCTCAGCAA------------------CAACAACAACAACAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------A----------------------------------------TGGTCATAACCAATACGCTCCAGCTGCC---AAATCCTATG-TGAGCTA--TGG-------------------------------------------------AGC------------CAAGAACAA
droMoj3	scaffold_6498:159975-160160 +		AGC-----A-GCAGC-----------------------------------------------AGCA------GCAG--CAGC----------------------------------------------------------------------------------------------------------AA---------------------------------CTACTACAGCAGCAGCAGCA------------------------------------------------------GCAGCA-GCAACTACTACAGCAGCAGCAGCAGCAGC----AGCA---GCAGCAG------------CAGCAGCAGCAGCA------------G---CAGCAGCAGCAGCA---GCAGCA-------------------------------------------------------------------------------------GCAGC------------A----------------------------------------------------------------------------------GCAGCAG--CAG---CAGCAGCAGCAGCAGCCAATCAA------------------------GACAAAGAAGAGGGCGAAGAAGA
droWil2	scf2_1100000004521:12223619-12223806 +		AGC-----A-ATTGC------------CCTTTGGAGCCGGTACCAAT-------------------------------------------CAGATA-----------------AAT-CTTA-----CGGCGC------CCAGCAATTTATCACCA--CAA------------------------------------------------CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GCAACAACAACAACAACAGCAGCAGCAGC----AACA---ATTGCTG---GCA---CAACAACA---GCA---------------A---ATGCAGCAGCAACAACAAAGACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-CCAGCAG--CAA-------------------------------------------------CAG------------CAACAGCAA
dp5	XL_group1e:7380121-7380310 -		CAA-----A-AAACG---------------------------------------------------------TCCATACTGGGCCTCATATTGGTA-----------------G-------------------------------------------CAAC---A------TCAGCAGCAACAACATCAGCCAACAGAACAACAG------------------------------------CA------------------ACAGCAGCAGCAGCAA---CAGCAACAG---CAA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAGCAGCA---ACA------GCA---------------------------AGAC----------------------------------------------AGCCAGC---AGC------------AGCAGCTGCAGCACTATGTTGCAGGGTTC-----------T-------------------------------A-------T-----------GAA-------------------------------------------------CAG------------CAGCAGCAG
droPer2	scaffold_60:66988-67171 +		AAG-----G-ACAAA-----------------------------------------------AGCA------ACCA--AAGC------------------AGCTGC-----------------CAATATTG--------------------------CAAC---A------ACAG---------------------------------CAACTT---------C------------AGCAACAACAACAACAACTGCAACTTCAACAA---------------CAACAG---CAA---CAACAA-CAGCAACT-------------------------------------------------------------------------------GCAACTTCA---GC---------A---------------------------ACA-------------------------------------------------------ACAACAACAAC------A------ACAACACCAACAAGCAGCGCCCCGC----------------------------------------A----AT------------------------------------------------------------------GCGAATGTACAACCAGAACATCA
droAna3	scaffold_13266:3494620-3494807 -		GAT-----G-ACAGCACTGAG------------------------------------------------------------GATGACCGCCCT--------------------------------------AG---------CC-----------AGCAAC---A------GCAGCAGCATCAACACAAAGCTGCACAAATG------------------------------------------------------CATCATCAGCAG------------------CAG--------------------------------------------------------------------------------------------------------CAGCAGCA---ACA------GCACCATCTGCAACAACAGCAGCAGCAGCAGCACTTT-------------------------------------------AACCAGT---TGC------------CCAATCTG--G--------GACTGGGCTCCATAT---CGCC-------------------------------A---------------TC--CTA-------------------------------------------------CGG------------TAATAATCA
droBip1	scf7180000391630:363-537 -		AAC-----G-GCGACATCGAG------------------------------------------------------------AAAGGCAACCCAACA-----------------TCA-GGAG-----CAG----------------------------CAGC---G------GC---------------A---------------------------------ACAGCAAC------AACATCAGGAG---------CA---------A-------------------------------------CAGCGCCAACAGCAACAACATC-------ACGAGCAGCAGCGGC------AACAGCAACAACATCACGAGCAGCAGCGG---------CA---------ACAGCAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-CAAGCAG--CAG-------------------------------------------------CGG------------CAACAGCAA
droKik1	scf7180000302536:1438-1621 -		ACC-----A-AAAGGAACC--------CCTC----------GTCAGC------------AGCAG--C------------------------------AGCACCAGC----------------------------------------------------------------------------------AGAA------------------------GCAGCACCAGCAGC------AGCAGCACCAG---------CA---------G-------------------------------------CAGC----------------------------AGCA---CC---AG---------CAGCAGCAGCACCACCAGCAGCAG------CAGCACCAGCA------------GCA------------------------GCAGCACCAGCAGCAGCAGCACCAACAGCAGCAACAG---------------------------------------------------------------------------------------------------CACCAG-----------------------CTG--CAG-------------------------------------------------C---------ATTCACAACAACAA
droFic1	scf7180000454072:3005220-3005411 +		AGC-----G-GCACC------------TCTC-----------------------------------------GC----CG-----------------------------------------------------------------------------CACC---A------CCAGCAGCAGCAGCAGCAGTC------------------------GGCGCACCTGCAGC------ACCACCACCAG---------CA---------G-------------------------------------CAGC----------------------------AGCA---GC---AG---------CAGCAGCACCTCCACCAGCAGCAC---------CAACAGCA---------GCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-CCTGCAG--CAGCAGCAGCAGCAACCGCAGGCACTCGCGCTCATGC---ACCCCGCCTCGCTGG------------CGCTGAGGA
droEle1	scf7180000491199:173828-173998 +		AAT-----A-CAACC-----------------------------------------------TGCA------GCCA--TCGAATGACAGTCG----CAACA------------TCTACAA-TAATCCCTATAT-----------------------------------------------------------------------------------------TCCGCAGC------AGCAGCAACAG---------CA---------A---CAGCAGCAACAGCAGCAG---CAA---CAGCAG-----------------------------------CA------------------------------------------------GCAGCAGCAGCA---ACA------GCA----------------------------------------------------------------------------------------------AC------A----------------------------------------------------------------------------------GCTGCAG--CAGACGCAACAGC---------------------------GCACCGCCCACCTGT------------TCAAGGCGT
droRho1	scf7180000777787:21384-21589 -		ACC-----A-ACAACAACAATTGCC--------AAATCACCACCATC------------ATCAT--C------------------------------ATCATCACCACCACCATCA-CAG-TCAACTACAACT-----------------------------------------------------------------------------------------CCAACAAC------AACAACAACAG---------CA---------A-------------------------------------CATCAACAACAACAGCAGCAAC-------ACCAACAACAGCCGC------TACACCAACAACA---------------------GCAATTGCAACA---CCA------GCA---------------------------G------------------------------CAACACCAAC-------------------CAC------------ACTATCAA------------------------CAACATGCC-------------------------------A------------------------------------------------------------------------TC------------CAACAACAA
droBia1	scf7180000302428:5893143-5893333 +		TAC-----A-GCAGAGGCAATTGAAGAACAC--------------GC------------AGCAG--CAGTCT------------------------CAGCAACAGCA------GCA-AAT-TCAAATGATTCA-----------------------------------------------------------------------------------------GCAGCAAC------AACAGCAGCAG---------CA---------G-------------------------------------CAGCAACAACAGCAGCAGCAGCAGCAAC----AACA---GCAGCAG---------CAGCAGCAGCAACA---------------A---CAGCAGCAACAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-ACAGCAG--CAG-------------------------------------------------CAG------------CAACAACAG
droTak1	scf7180000415079:150851-151030 +		GAC-----A-ACAGA------------CCTGGGTAACAACTACAATCCGTTTGCACAGCAGGT----------CC--------------------------------------------------------------------------------------TTGCACAAC---------------------------------AGCAA---------------------------------CACCAG---------CA---------A---CAGCAA---CAGCAGCAG---CAT---CAACAA-------------CAGCAGCAA-------CAT------------------------------------------------------------CA------ACA------GCA---------------------------G-------------------------------------------------------CAGCAACAGCAAC------AGGCCTTG---------------------CAGTTCCATGCC-------------------------------AATCCATTCG--------GT-----------------------------AATAC---CGG------------AGG------------CAACAACTG
droEug1	scf7180000409181:80289-80484 -		AAC-----A-GCAGC-----------------------------------------------AGCA------ACCA--CTGCAAGTC----CAGCA-----------------GCA----------------------------------------------------------------------GCAACC---------ACTG---CAAGTC------------------------------------------CA-------------------------------------------------------------------GC---AG----CAGCA---AC---CA---------CTGCAAGTTCA------------ACAGCAGCAACCACTGC---------------A---------------------------AATCC---------------------------AGCA-------------------GCAGCAACAGCAAC------AGG-------------------------------------------------TGTATGTTGCACCTACC---CAAGCCACTG-TCA----GC-----------------------------AATCCTGG---CGCCCTTCCCGATGGCTATGACTTTGTGAAGCCTGA
dm3	chr2L:17437609-17437774 -		CCC-----A-GCAGG-----------------------------------------------T----------CCTTGCCC--------------------------------------------------------------------------------------AGCAGC---------------------------------AGCAGCAT---------C------------AGCAGCAGCAGCAACAGCACCAGCATCAGCAC---------------CAGCAG---C--------------------------------------------------------------AACACCAACAGCA---------------------GCAGCAGCAGCA---GCA------GCA-------------------------------------------------------------------------------------GCAACAGCAAC------AGTCCTTG---------------------CAATTTCATGCC-------------------------------AATCCCTTTG--------GC-----------------------------AATCC---TGG------------CGG------------CAATAGCTG
droSim2	3r:9218771-9218927 +		CAGCCATCTAGCGAA-----------------------------------------------CG--------TCCT--CGACAAG-----------------------------CC-CAG-TCA-----------------------------------------------------------------GCC---------AGGC---CAACGC---------C------------AACGGCAACAGCAACAGCAATAGC---AA---------------CATCATCAG---CAA---CAACAA-----------------------------------CA---------------------------------------------------GCAGCAGCA----------------------------------------------------------------------------------------------------GCAGCAGCAACCACTTCAGTACCTC---------------------CAACC---CGCC-------------------------------AACCTCCATG--------GC-----------------------------CAT-----------------------------------------GCT
droSec2	scaffold_2:6680326-6680511 -		AGC-----A-GCAGC-----------------------------------------------ATCA------GC---------------------------------------------------------------------------------------AAGCGCAGC---------AGC---CACAAAC----------------------------------------------------------------------------------------------------------------------------------GTTGC---AG----CTGCAGAC------GTCGCCATCCCAACAACA---------------------ACCGCAGCAGCA---CCA------GCA---------------------------GAT-------------------------------CGTCTACCGCATGACCACCACAC---AGCAGCAAC------A------A---------------------------------AGGCCCTTAGGGGTAAGTTAGGTTTTCCACATAGCCCTGTACTAATCTG--TCA-------------------------------------------------CTT------------CAAACATAA
droYak3	2R:10239938-10240109 -		GAG-----A-ACAAC-----------------------------------------------AACT------CC---------------------------------------------------------------------------------------ATACGCAGC---------AGC------------------------AACAACACAGGCTGCAACAGTAAC------AACACCACGAG---------CA---------A-------------------------------------CATC----------------------------AACA---AA---CA---------CAGCAGCAACATTACAAGGAAA------------CACAGC---------------A---------------------------AAGGC---------------------------AGCTGCAACAACACAAACAACAAAC---AAC------------AGC---------------------------------------------------------------------AAACACTAC---GAAAAA--CAA-------------------------------------------------CTG------------CAAACACAA
droEre2	scaffold_4784:3526922-3527108 +		AGC-----A-GCAGC-----------------------------------------------AGCA------CT----CTC----------------AGCATCAGCAGCAACATCA-CGG-CCATCCGTTGCATCCG--CATCAT-ACACAC-----CAGCAACA---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---AG----CAGCAGCC------GCCGCAACACCACCAGCA---------------------GCAGCAGCAGCA---ACA------GCAGCACGCACAGCA-------------------------------------------------------------------------GCAGCAGCAGC------A------G------------------------CATCATGC------------------------------------------------------------------------------------------------CGCCCAGCTGG------------C--------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

AAC-----A-ACAGA-----------------------------------------------CG--------TCCA--TTGAAAGTCAGTCCAATA-----------------GCA-CAAA-----CAATGCGTCAGTGCAACAA-TCATCA-----------------------------------------------------------------------------------------CAACAA---------CA---------A---CAACAA---CA---------------GCAGCAG-CAGCAACT---CCAGCTGCAG-------CAG---------------------------------------------------------CAGCAGCA-------------------------------------------------------------------------------------------------------GCAGCAAC------A----------------------------------------TGGCCATAATCAGTACGCGCCAGCTGCCGCCAAACCCTATT-TAAGCCA--TGC-------------------------------------------------TGG------------CAAAAATAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------A----------------------------------------TGGCCATAATCAGTACGCG............................................................................................................	22	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................A---CAACAA---CA---------------GCAGCAG-CAGCAACT---CC................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	1	0
....................................................................................................................................................................................................................................................................................A---CA---------------GCAGCAG-CAGCAACT---C.................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	1	0
...................................................................................................................................................................................................................................................ACAA---------CA---------A---CAACAA---CA---------------GCAGCAG-C............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0

droVir3

AAC-----A-ACAGA-----------------------------------------------TG--------TCCA--CTGAAAATCAGTCAAATA-----------------GCA-CAAA-----CAATGCATCTGTG---------------------------------------------------------------------------------------------------------------------CTGTCTCAGCAA------------------CAACAACAACAACAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------A----------------------------------------TGGTCATAACCAATACGCTCCAGCTGCC---AAATCCTATG-TGAGCTA--TGG-------------------------------------------------AGC------------CAAGAACAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTATG-TGAGCTA--TGG-------------------------------------------------AGC------------CAAGAACAA	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AAATA-----------------GCA-CAAA-----CAATGCATCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------A----------------------------------------TGGTC..........................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------A----------------------------------------TGGTCATAACCAATACGCTCCAGC.......................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------A----------------------------------------TGGTC..........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AATCAGTCAAATA-----------------GCA-CAAA-----CAATGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TG--------TCCA--CTGAAAATCAGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------TGGTCATAACCAATACGCTCCAGCT......................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCAATACGCTCCAGCTG.....................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTATG-TGAGCTA--TGG-------------------------------------------------AGC------------CAA......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC------A----------------------------------------TGGTCATAACCAATACG..............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC---AAATCCTATG-TGAGCTA--TGG-------------------------------------------------AGC------------C........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................GAAAATCAGTCAAATA-----------------GCA-CAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AAATCCTATG-TGAGCTA--TGG-------------------------------------------------........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TGCATCTGTG---------------------------------------------------------------------------------------------------------------------CTGTCTCAGCAA------------------CAACA...........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................AGCAA------------------CAACAACAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------C....................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................AA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------........................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------AC....................................................................................................................................................................................	27	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACAG...............................................................................................................................................................................................................................................................................................	26	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------AC....................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAA..................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................A------------------CAACAACAACAACAA----CAGCAGCA---------G...........................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AGCA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAG..................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ACAACAACAACAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------.....................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACA................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAA...............................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------A----------------------------------------...............................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACA................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACA................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCA................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AA------------------CAACAACAACAACAA----CAGCAGCA---------............................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................A----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACA...................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CAGCA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGC.................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................CA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACA...................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CAA------------------CAACAACAACAACAA----CAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CA...................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AACAACAACAACAA----CAGCAGCA---------GC..........................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACAA----CAGCAGCA---------GCAA-------CAG---------------------------------------------------------CA...................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------A----------------------------------------T..............................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGCAAC------........................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GCA---------GCAA-------CAG---------------------------------------------------------CAACAGCA-------------------------------------------------------------------------------------------------------ACAGC.................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGC-----A-GCAGC-----------------------------------------------AGCA------GCAG--CAGC----------------------------------------------------------------------------------------------------------AA---------------------------------CTACTACAGCAGCAGCAGCA------------------------------------------------------GCAGCA-GCAACTACTACAGCAGCAGCAGCAGCAGC----AGCA---GCAGCAG------------CAGCAGCAGCAGCA------------G---CAGCAGCAGCAGCA---GCAGCA-------------------------------------------------------------------------------------GCAGC------------A----------------------------------------------------------------------------------GCAGCAG--CAG---CAGCAGCAGCAGCAGCCAATCAA------------------------GACAAAGAAGAGGGCGAAGAAGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAA------------------------GACAAAGAAGAGGGCGAAG....	24	3	0.67	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA------------------------GACAAAGAAGAGGGCGAAG....	23	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCCAATCAA------------------------GACAAAGAAGA............	28	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC----AGCA---GC....................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	4	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCA------------G---CAGC.................................................................................................................................................................................................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GCAACTACTACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................	23	14	0.14	2	2	0	0	0	0	0
................................................................................GC----------------------------------------------------------------------------------------------------------AA---------------------------------CTACTACAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	0.14	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TACTACAGCAGCAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
................................................................................................................................................................................................................................TACTACAGCAGCAGCAGCA------------------------------------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................GCA-GCAACTACTACAGCAGCAGCATT.......................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
...........................................................................G--CAGC----------------------------------------------------------------------------------------------------------AA---------------------------------CTACTACAGCAGCAGCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................CTACTACAGCAGCAGCAGCA------------------------------------------------------GC...................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	1	0	0	0	0	0
.............................................................................................................................................................................................A---------------------------------CTACTACAGCAGCAGCAGCA------------------------------------------------------GCAGCA-GT............................................................................................................................................................................................................................................................................................................................................................................................	29	12	0.08	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CTACTACAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ACTACTACAGCAGCAGCAGCAGCAGC----AGT..........................................................................................................................................................................................................................................................................................................................................................	29	12	0.08	1	1	0	0	0	0	0
................................................................................GC----------------------------------------------------------------------------------------------------------AA---------------------------------CTACTACAGCAGCAGCAGCA------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	1	0	0	0	0	0
..............................................................................CAGC----------------------------------------------------------------------------------------------------------AA---------------------------------CTACTACAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.07	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GCAACTACTACAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................CA-GCAACTACTACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................	25	14	0.07	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TACTACAGCAGCAGCAGTC------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................CTACAGCAGCAGCAGCAGCAGC----A............................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TACAGCAGCAGCAGCAGCAGC----AG...........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................CTACAGCAGCAGCAGCA------------------------------------------------------GCAGCA-..............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TACTACAGCAGCAGCAGCA------------------------------------------------------GC...................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TACTACAGCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--CAG---CAGCAGCAGCAGCAGCCA....................................................	23	20	0.05	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................TACAGCAGCAGCAGCA------------------------------------------------------GCAGCA-G.............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0

droWil2

AGC-----A-ATTGC------------CCTTTGGAGCCGGTACCAAT-------------------------------------------CAGATA-----------------AAT-CTTA-----CGGCGC------CCAGCAATTTATCACCA--CAA------------------------------------------------CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GCAACAACAACAACAACAGCAGCAGCAGC----AACA---ATTGCTG---GCA---CAACAACA---GCA---------------A---ATGCAGCAGCAACAACAAAGACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-CCAGCAG--CAA-------------------------------------------------CAG------------CAACAGCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAAAGACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-CCAGCA...............................................................................	27	1	1.00	1	0	0	0	1	0
.....................................................................................................................CTTA-----CGGCGC------CCAGCAATTTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................ACA---GCA---------------A---ATGCAGCAGCAAC........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................................CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GC............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.35	7	0	0	0	7	0
..................................................................................................................................................................................................................AC------------------------AACAGCA------------------------------------------------------GCAGCA-GCAACA........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.30	6	0	0	0	6	0
.......................................................................................................................................................ACCA--CAA------------------------------------------------CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GCA...........................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGC----AAC..........................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCAGCAGCAGC----A............................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................CA--CAA------------------------------------------------CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GC............................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAGC----AA...........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGC----AAC..........................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................A------------------------------------------------------GCAGCA-GCAACAACAACA..................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................A--CAA------------------------------------------------CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GC............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................C------------------------AACAGCA------------------------------------------------------GCAGCA-GCAACAACAAC...................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAACAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................CA-GCAACAACAACAACAACA............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................AAC------------------------AACAGCA------------------------------------------------------GCAGCA-GCAAC.........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................A------------------------------------------------------GCAGCA-GCAACAACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................A-GCAACAACAACAACAACAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCAGCAGCAGC----AA...........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................AACAACAACAACAACAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................A--CAA------------------------------------------------CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GCA...........................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAGC----A............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0
................................................................................................................................................................................................................CAAC------------------------AACAGCA------------------------------------------------------GCAGCA-GCAACA........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................CA--CAA------------------------------------------------CAAC------------------------AACAGCA------------------------------------------------------GC...................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAGC----AA...........................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0

dp5

CAA-----A-AAACG---------------------------------------------------------TCCATACTGGGCCTCATATTGGTA-----------------G-------------------------------------------CAAC---A------TCAGCAGCAACAACATCAGCCAACAGAACAACAG------------------------------------CA------------------ACAGCAGCAGCAGCAA---CAGCAACAG---CAA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAGCAGCA---ACA------GCA---------------------------AGAC----------------------------------------------AGCCAGC---AGC------------AGCAGCTGCAGCACTATGTTGCAGGGTTC-----------T-------------------------------A-------T-----------GAA-------------------------------------------------CAG------------CAGCAGCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGGTTC-----------T-------------------------------A-------T-----------GAA-------------------------------------------------CAG------------C........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................AACAG---CAA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAG..................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................................................................CAACAA--------------------------------------------------------------CA---------------------GCAGCAGCAGCA---ACA------.................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAA---CAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................CAGCAGCAACAACATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAGCAGCA---ACA------G................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AACAACAG------------------------------------CA------------------ACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AA---CAGCAACAG---CAA---CAACAA--------------------------------------------------------------C...............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAGCAGCA---AC........................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................ACAG------------------------------------CA------------------ACAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GCAGCAGCAGCAA---CAGCAACAG---C.........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AACAACAG------------------------------------CA------------------ACAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................G---CAA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAGCAGC..............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAGC.................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AACAG---CAA---CAACAA--------------------------------------------------------------CA---------------------GCAGCAGC.................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA---CAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAG-----G-ACAAA-----------------------------------------------AGCA------ACCA--AAGC------------------AGCTGC-----------------CAATATTG--------------------------CAAC---A------ACAG---------------------------------CAACTT---------C------------AGCAACAACAACAACAACTGCAACTTCAACAA---------------CAACAG---CAA---CAACAA-CAGCAACT-------------------------------------------------------------------------------GCAACTTCA---GC---------A---------------------------ACA-------------------------------------------------------ACAACAACAAC------A------ACAACACCAACAAGCAGCGCCCCGC----------------------------------------A----AT------------------------------------------------------------------GCGAATGTACAACCAGAACATCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAAGCAGCGCCCCGC----------------------------------------A----A..........................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AACAACAACAACTGCAACTTCAACAA---------------C..................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAAGCAGCGCCCCGC----------------------------------------A----C..........................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------ACA-------------------------------------------------------ACAACAACAAC------A------ACAACACCAACA.....................................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0

droAna3

GAT-----G-ACAGCACTGAG------------------------------------------------------------GATGACCGCCCT--------------------------------------AG---------CC-----------AGCAAC---A------GCAGCAGCATCAACACAAAGCTGCACAAATG------------------------------------------------------CATCATCAGCAG------------------CAG--------------------------------------------------------------------------------------------------------CAGCAGCA---ACA------GCACCATCTGCAACAACAGCAGCAGCAGCAGCACTTT-------------------------------------------AACCAGT---TGC------------CCAATCTG--G--------GACTGGGCTCCATAT---CGCC-------------------------------A---------------TC--CTA-------------------------------------------------CGG------------TAATAATCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................GCACAAATG------------------------------------------------------CATCATCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0
..................................................................................ATGACCGCCCT--------------------------------------AG---------CC-----------AGCAAC---A------GCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................ATG------------------------------------------------------CATCATCAGCAG------------------CAG--------------------------------------------------------------------------------------------------------CAGCAGC..............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
............AGCACTGAG------------------------------------------------------------GATGACCGCCCT--------------------------------------AG---------CC-----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTT-------------------------------------------AACCAGT---TGC------------CCAATCTG--G--------.....................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................................GACCGCCCT--------------------------------------AG---------CC-----------AGCAAC---A------GCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCACTT.............................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................ATCATCAGCAG------------------CAG--------------------------------------------------------------------------------------------------------CAGCAGC..............................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................C-----------AGCAAC---A------GCAGCAGCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	16	0.06	1	1	0	0	0	0	0
...........................................................................................................................................................AGCAAC---A------GCAGCAGCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................CATCATCAGCAG------------------CAG--------------------------------------------------------------------------------------------------------CAGCA................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................C-----------AGCAAC---A------GCAGCAGCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................GCAAC---A------GCAGCAGCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1

droBip1

AAC-----G-GCGACATCGAG------------------------------------------------------------AAAGGCAACCCAACA-----------------TCA-GGAG-----CAG----------------------------CAGC---G------GC---------------A---------------------------------ACAGCAAC------AACATCAGGAG---------CA---------A-------------------------------------CAGCGCCAACAGCAACAACATC-------ACGAGCAGCAGCGGC------AACAGCAACAACATCACGAGCAGCAGCGG---------CA---------ACAGCAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA-CAAGCAG--CAG-------------------------------------------------CGG------------CAACAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACC-----A-AAAGGAACC--------CCTC----------GTCAGC------------AGCAG--C------------------------------AGCACCAGC----------------------------------------------------------------------------------AGAA------------------------GCAGCACCAGCAGC------AGCAGCACCAG---------CA---------G-------------------------------------CAGC----------------------------AGCA---CC---AG---------CAGCAGCAGCACCACCAGCAGCAG------CAGCACCAGCA------------GCA------------------------GCAGCACCAGCAGCAGCAGCACCAACAGCAGCAACAG---------------------------------------------------------------------------------------------------CACCAG-----------------------CTG--CAG-------------------------------------------------C---------ATTCACAACAACAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGC-----G-GCACC------------TCTC-----------------------------------------GC----CG-----------------------------------------------------------------------------CACC---A------CCAGCAGCAGCAGCAGCAGTC------------------------GGCGCACCTGCAGC------ACCACCACCAG---------CA---------G-------------------------------------CAGC----------------------------AGCA---GC---AG---------CAGCAGCACCTCCACCAGCAGCAC---------CAACAGCA---------GCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-CCTGCAG--CAGCAGCAGCAGCAACCGCAGGCACTCGCGCTCATGC---ACCCCGCCTCGCTGG------------CGCTGAGGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAT-----A-CAACC-----------------------------------------------TGCA------GCCA--TCGAATGACAGTCG----CAACA------------TCTACAA-TAATCCCTATAT-----------------------------------------------------------------------------------------TCCGCAGC------AGCAGCAACAG---------CA---------A---CAGCAGCAACAGCAGCAG---CAA---CAGCAG-----------------------------------CA------------------------------------------------GCAGCAGCAGCA---ACA------GCA----------------------------------------------------------------------------------------------AC------A----------------------------------------------------------------------------------GCTGCAG--CAGACGCAACAGC---------------------------GCACCGCCCACCTGT------------TCAAGGCGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACC-----A-ACAACAACAATTGCC--------AAATCACCACCATC------------ATCAT--C------------------------------ATCATCACCACCACCATCA-CAG-TCAACTACAACT-----------------------------------------------------------------------------------------CCAACAAC------AACAACAACAG---------CA---------A-------------------------------------CATCAACAACAACAGCAGCAAC-------ACCAACAACAGCCGC------TACACCAACAACA---------------------GCAATTGCAACA---CCA------GCA---------------------------G------------------------------CAACACCAAC-------------------CAC------------ACTATCAA------------------------CAACATGCC-------------------------------A------------------------------------------------------------------------TC------------CAACAACAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAC-----A-GCAGAGGCAATTGAAGAACAC--------------GC------------AGCAG--CAGTCT------------------------CAGCAACAGCA------GCA-AAT-TCAAATGATTCA-----------------------------------------------------------------------------------------GCAGCAAC------AACAGCAGCAG---------CA---------G-------------------------------------CAGCAACAACAGCAGCAGCAGCAGCAAC----AACA---GCAGCAG---------CAGCAGCAGCAACA---------------A---CAGCAGCAACAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-ACAGCAG--CAG-------------------------------------------------CAG------------CAACAACAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAC-----A-ACAGA------------CCTGGGTAACAACTACAATCCGTTTGCACAGCAGGT----------CC--------------------------------------------------------------------------------------TTGCACAAC---------------------------------AGCAA---------------------------------CACCAG---------CA---------A---CAGCAA---CAGCAGCAG---CAT---CAACAA-------------CAGCAGCAA-------CAT------------------------------------------------------------CA------ACA------GCA---------------------------G-------------------------------------------------------CAGCAACAGCAAC------AGGCCTTG---------------------CAGTTCCATGCC-------------------------------AATCCATTCG--------GT-----------------------------AATAC---CGG------------AGG------------CAACAACTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAC-----A-GCAGC-----------------------------------------------AGCA------ACCA--CTGCAAGTC----CAGCA-----------------GCA----------------------------------------------------------------------GCAACC---------ACTG---CAAGTC------------------------------------------CA-------------------------------------------------------------------GC---AG----CAGCA---AC---CA---------CTGCAAGTTCA------------ACAGCAGCAACCACTGC---------------A---------------------------AATCC---------------------------AGCA-------------------GCAGCAACAGCAAC------AGG-------------------------------------------------TGTATGTTGCACCTACC---CAAGCCACTG-TCA----GC-----------------------------AATCCTGG---CGCCCTTCCCGATGGCTATGACTTTGTGAAGCCTGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCC-----A-GCAGG-----------------------------------------------T----------CCTTGCCC--------------------------------------------------------------------------------------AGCAGC---------------------------------AGCAGCAT---------C------------AGCAGCAGCAGCAACAGCACCAGCATCAGCAC---------------CAGCAG---C--------------------------------------------------------------AACACCAACAGCA---------------------GCAGCAGCAGCA---GCA------GCA-------------------------------------------------------------------------------------GCAACAGCAAC------AGTCCTTG---------------------CAATTTCATGCC-------------------------------AATCCCTTTG--------GC-----------------------------AATCC---TGG------------CGG------------CAATAGCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................CCAGCATCAGCAC---------------CAGCAG---C--------------------------------------------------------------AACAC......................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG--------GC-----------------------------AATCC---TGG------------CGG------------CAATAGCT.	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCTTTG--------GC-----------------------------AATCC---TGG------------CGG------------C........	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................AGC---------------------------------AGCAGCAT---------C------------AGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CAGCAT---------C------------AGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------------GCAGCAGCAGCA---GCA------GCA-------------------------------------------------------------------------------------GCAACA...................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CAGCAG---C--------------------------------------------------------------AACACCAACAGC...............................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---GCA------GCA-------------------------------------------------------------------------------------.........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACCAACAGCA---------------------GCAGCAGCAGC..............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAGCCATCTAGCGAA-----------------------------------------------CG--------TCCT--CGACAAG-----------------------------CC-CAG-TCA-----------------------------------------------------------------GCC---------AGGC---CAACGC---------C------------AACGGCAACAGCAACAGCAATAGC---AA---------------CATCATCAG---CAA---CAACAA-----------------------------------CA---------------------------------------------------GCAGCAGCA----------------------------------------------------------------------------------------------------GCAGCAGCAACCACTTCAGTACCTC---------------------CAACC---CGCC-------------------------------AACCTCCATG--------GC-----------------------------CAT-----------------------------------------GCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................AGCA----------------------------------------------------------------------------------------------------GCAGCAGCAACCAC...........................................................................................................................................................................	18	13	1.69	22	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0
...CCATCTAGCGAA-----------------------------------------------CG--------TCCT--CGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA----------------------------------------------------------------------------------------------------GCAGCAGCAACCAC...........................................................................................................................................................................	20	11	0.91	10	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................G---CAA---CAACAA-----------------------------------CA---------------------------------------------------GCAG..................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AG---CAA---CAACAA-----------------------------------CA---------------------------------------------------GCAGCAGCA----------------------------------------------------------------------------------------------------GC.......................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AA---CAACAA-----------------------------------CA---------------------------------------------------GCAGCAGCA----------------------------------------------------------------------------------------------------GCAGC....................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGC-----A-GCAGC-----------------------------------------------ATCA------GC---------------------------------------------------------------------------------------AAGCGCAGC---------AGC---CACAAAC----------------------------------------------------------------------------------------------------------------------------------GTTGC---AG----CTGCAGAC------GTCGCCATCCCAACAACA---------------------ACCGCAGCAGCA---CCA------GCA---------------------------GAT-------------------------------CGTCTACCGCATGACCACCACAC---AGCAGCAAC------A------A---------------------------------AGGCCCTTAGGGGTAAGTTAGGTTTTCCACATAGCCCTGTACTAATCTG--TCA-------------------------------------------------CTT------------CAAACATAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................AAC----------------------------------------------------------------------------------------------------------------------------------GTTGC---AG----CTGCAGAC------GT..............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGCATGACCACCACAC---AGCAGC.................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AACA---------------------ACCGCAGCAGCA---CCA------GC...............................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------CGTCTACCGCATGACCACCACAC---AGC....................................................................................................................................................................................	27	1	1.00	1	1	0	0	0

droYak3

GAG-----A-ACAAC-----------------------------------------------AACT------CC---------------------------------------------------------------------------------------ATACGCAGC---------AGC------------------------AACAACACAGGCTGCAACAGTAAC------AACACCACGAG---------CA---------A-------------------------------------CATC----------------------------AACA---AA---CA---------CAGCAGCAACATTACAAGGAAA------------CACAGC---------------A---------------------------AAGGC---------------------------AGCTGCAACAACACAAACAACAAAC---AAC------------AGC---------------------------------------------------------------------AAACACTAC---GAAAAA--CAA-------------------------------------------------CTG------------CAAACACAA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

AGC-----A-GCAGC-----------------------------------------------AGCA------CT----CTC----------------AGCATCAGCAGCAACATCA-CGG-CCATCCGTTGCATCCG--CATCAT-ACACAC-----CAGCAACA---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---AG----CAGCAGCC------GCCGCAACACCACCAGCA---------------------GCAGCAGCAGCA---ACA------GCAGCACGCACAGCA-------------------------------------------------------------------------GCAGCAGCAGC------A------G------------------------CATCATGC------------------------------------------------------------------------------------------------CGCCCAGCTGG------------C--------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................AACATCA-CGG-CCATCCGTTGCATCCG--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
AGC-----A-GCAGC-----------------------------------------------AGCA------CT----CTC----------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AGCA---ACA------GCAGCACGCACAGCA-------------------------------------------------------------------------GCAGC....................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................GCA---ACA------GCAGCACGCACAG....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................CTC----------------AGCATCAGCAGCAACATCA-CGG-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................CA-CGG-CCATCCGTTGCATCCG--CATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACGCACAGCA-------------------------------------------------------------------------GCAGCAGCA................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................ATCAGCAGCAACATCA-CGG-CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................ACATCA-CGG-CCATCCGTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................A---ACA------GCAGCACGCACAGCA-------------------------------------------------------------------------GCAGCAGC.................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................CGCAACACCACCAGCA---------------------GCAGC....................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................AACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---AG----CA............................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	3	0
...............................................................................................................................................................GCAACA---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGC.............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	1	1	0	0	0	0	0
...........................................................................................................................................................................................C---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---A...................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................CACCAGCA---------------------GCAGCAGCAGCA---ACA------GCA..............................................................................................................................................................................................................................................................................	26	13	0.08	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---ACA------GCAGCAC..........................................................................................................................................................................................................................................................................	19	19	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................A---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AGCA---------------------GCAGCAGCAGCA---ACA------GCAGC............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CCACCAGCA---------------------GCAGCAGCAGCA---..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................................AACA---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................CCACCAGCA---------------------GCAGCAGCAGC..............................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---ACA------GCA..............................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---A...................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
.................................................................................................................................................................AACA---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................ACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---AG----C.............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---ACA------GCAGCA...........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCA-------------------------------------------------------------------------GCAGCAGCAGC------A------G------------------------C.......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---AG----CAG...........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................................................................AGCAACA---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAG..............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................A---------------------GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---AG----CA............................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................GC---------AACAACAG----------------------------------------------------------------------------------------------------------------CAGCAGCAGC---A...................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CACCACCAGCA---------------------GCAGCAGC.................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0

-13.9	-13.6	-13.5	-13.3

dgr_333

scaffold_15110:17214503-17214592 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads