dgr_33

TACTATTTGTGCGGCAGGAAAAGTTGGGAGTTGCAATGGCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATTTAAGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTTGACCACATACAGCAAATGGTGTAAGTAACTAATATTGACTATA *********************************.((((((((...((.(((((((.((((.((((.(((((..............))))))))).)))).))))))).))...))))).)))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
..................................................TCAATTCCGTAGTGCATTGCAGT.........................................................................................	23	0	1	81.00	81	50	31
..................................................TCAATTCCGTAGTGCATTGCAG..........................................................................................	22	0	1	29.00	29	25	4
..................................................TCAATTCCGTAGTGCATTGCA...........................................................................................	21	0	1	11.00	11	11	0
...................................................CAATTCCGTAGTGCATTGCAGT.........................................................................................	22	0	1	4.00	4	4	0
..................................................TCAATTCCGTAGTGCATTGCAGTT........................................................................................	24	0	1	3.00	3	3	0
.................................................CTCAATTCCGTAGTGCATTGCAGT.........................................................................................	24	1	1	2.00	2	2	0
................................................ACTCAATTCCGTAGTGCATTGCAGT.........................................................................................	25	2	1	1.00	1	1	0
..................................................TCAATTCCGTAGTGCATTGCAGTGGGTTT...................................................................................	29	2	1	1.00	1	1	0
...................................................CAATTCCGTAGTGCATTGCA...........................................................................................	20	0	1	1.00	1	1	0
..................................................TCAATTCCGTAGTGCATCGCAGT.........................................................................................	23	1	1	1.00	1	0	1
......................................................TTCCGTAGTGCATTGCAGT.........................................................................................	19	0	1	1.00	1	0	1
..................................................TCAATTCCGTAGTGCATTGC............................................................................................	20	0	1	1.00	1	1	0
..................................................TCAATTCTGTAGTGCATTGCAGT.........................................................................................	23	1	1	1.00	1	1	0
..................................................TCAATTCCGTAGTGCATTGCAATC........................................................................................	24	2	1	1.00	1	1	0
..................................................TCAATTCCGTAGTTCATTGCAGT.........................................................................................	23	1	1	1.00	1	0	1
..................................................TCAATTCCGTAGCGCATTGCAGTTT.......................................................................................	25	2	1	1.00	1	1	0
..................................................TCAATTCCGTAGTCCATTGCAGT.........................................................................................	23	1	1	1.00	1	0	1
.....................................................ATTCCGTAGTGCATTGCAGT.........................................................................................	20	0	1	1.00	1	1	0
..................................................TCAATTCCATAGTGCATTGCAG..........................................................................................	22	1	1	1.00	1	0	1
...............................................GATTCAATTCCGTAGTGCATTGCAGT.........................................................................................	26	2	1	1.00	1	1	0
..................................................TCAATTCCGTACTGCATTGCAGT.........................................................................................	23	1	1	1.00	1	0	1
....................................................AATTCCGTAGTGCATTGCA...........................................................................................	19	0	1	1.00	1	1	0
...................................................CAATTCCGTAGTGCATTGCAG..........................................................................................	21	0	1	1.00	1	1	0
..................................................TCAATTCCGTAGTGCATTGCAGG.........................................................................................	23	1	1	1.00	1	0	1
..........................................................GTGGTGCATGGCCGTTGATT....................................................................................	20	3	4	0.25	1	0	1
.........................................................CGTAGTGCATGGCCGTTC.......................................................................................	18	3	15	0.07	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15126:4596321-4596482 +	dgr_33	candidate-rescued	-TACTATTT-------------------------------------------GTGCGGCAGGA------AAAGTTGGGAGTTG-----CAATGGCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT-TA---AGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTT-GACCACATACAG--CAAATGG---T---GTAAG--TAACTAATATTG----------ACTA--------TA
droVir3	scaffold_12963:14767710-14767867 -	dvi-mir-932	Known_mirbase	-TTTTA-------------------------CAAACA---------------GTTCG----------AATGATGTTGGAGATG-----ATATGGCAGCGAAACTCTCAATTCCGTAGTGCATTGCAGTTGATT-TT---AGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGCT-GACCGCAGACAA--CGTATGG---A------------ATCGCAGCTC------ATCGGATG--------AA
droMoj3	scaffold_6500:17707433-17707609 -	dmo_8	confident	-ATTTATTTATGTACAAACTTTCGCATTGAACAAACAGTTAAGCGACTGCGAGTGCG----------A-----GTGCGAGTTGATTATCAATGGCTGCGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT-TA---AGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGTT-GACCACAGACAG--CATATGG--------------------------------------------------
droWil2	scf2_1100000004585:6812345-6812433 -	dwi_24	confident	--------------------------------------------------------------------------------------------GGCATTGTAGCTATCAATTCCGTAGTGCATTGCAGTTGGTA-CT---AGAAAATACTGCAAGCGCTGCGGACTTGCTAACTCTGAT-GACCATA----------------------------------------------------------------
dp5	4_group5:397117-397248 +	dps-mir-932	Known_mirbase	TG--------------------------------------------------------------------------------------CATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCTGC------AGCAGCGA-------TAGTGATA----------GCGA--------TG
droPer2	scaffold_5:4895121-4895252 +	dpe_12	confident	TG--------------------------------------------------------------------------------------CATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCTGC------AGCAGCGA-------TAGTGATA----------GCGA--------TG
droAna3	scaffold_12916:8482573-8482681 +	dan_10	confident	-----------------------------------------------------------------------------------------------------ACTTTCAATTCCGTAGTGCATTGCAGTGTTTT-TA---AACTACAACTGCATGCTCTGCGGACTTGGCAGATTTGAA-GACCAGGAGCAA--CTTTTAA---G------------AACAATATTT----------AACA--------AA
droBip1	scf7180000396572:2915419-2915535 -			-----------------------------------------------------------------------------------------------------ACTTTCAATTCCGTAGTGCATTGCAGTGTTTT-TA---AAGTTCTACTGCAAGCTCTGCGGACTTGGCAGATTTGAA-AACCAACAGCAA--CTGTCAA---TAAAA-----------AGATTTA----------AC-AAAAATGTGAT
droKik1	scf7180000302468:247268-247388 -			-----------------------------------------------------------------------------------------AATGGTATCGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTTTC-AA---AGTCCCAACTGCAAGCATTGTGGGATTGGCAGCATTGACCCACCATGAACAT--CGCCTGA----------------AACAGAATCG----------CCTG--------TG
droFic1	scf7180000453815:262227-262360 +			-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT-TA---ATTATCAACCGCAAGCGCTGCGGATTTGGCAACTTTGAT-GGCCTCCATCAT--CTGCTAA---TTAAATGTA--AAATTATGA-------ATAATGATTA--------TA
droEle1	scf7180000490970:125076-125205 +			-------------------------------------------------------------------------------------------------TGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTACT-TA---ATTAGCAACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCATG---TCGAATGTA--AAGTAATTATCAACTAATA---TAAA--------CA
droRho1	scf7180000780014:73911-74051 +			-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TT---ACTATCTACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTTATCAT--CTGTAAG---TCAAAAGTG--AAGTTAATAGTCACTAATAATGACAG--------CA
droBia1	scf7180000302422:2681482-2681608 +			-----------------------------------------------------------------------------------------AAAGGTATTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT-AA---GCTATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCAACAT--CTGCTGG---CGAAATGTGTAAAAT------TA----------AAAC--------CA
droTak1	scf7180000415104:31217-31331 +			-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT-TA---AAAATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAG-GACCTTCATCAT--CTGCTAG---TCAAATGTG--AA----------------------------------
droEug1	scf7180000409463:2212297-2212431 -			-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TA---AATATCAACTGCAAGCGCTGCGGACTTGGCAACTTTGAT-GACCTTCATCAT--CTAATAG---TCAAATGTA--AAAAACTTA-------AA-------ATTTATGACAG
dm3	chr2L:6902059-6902191 +	dme-mir-932	Known_mirbase	-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TC---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCTAG---AGAAATGTG--AAATTTGTAGTA----------ACCA--------TA
droSim2	2l:6670407-6670539 +	dsi-mir-932	Known_mirbase	-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TA---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCTAG---AGAAATGTG--AAATTTGTAGTA----------ACCA--------TA
droSec2	scaffold_3:2435762-2435894 +	dse_19	confident	-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TA---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCTAG---AGAAATGTG--AAATTTGTAGTA----------ACCA--------TA
droYak3	2L:6007695-6007865 -	dya_12	confident	-CCCATACT-------------------------------------------TTACAGTTCGGAACTAAATATTTCAAAAATA-----TATTGGCTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT-TA---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCATCAT--CTGCTAG---AGAAATGTG--AAATTGGTAGTA----------ACCA--------TA
droEre2	scaffold_4929:15815538-15815664 +	der_11	confident	-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTCTT-TA---CTTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTAATCAT--CTGGAGCTAGAGACGTGTG--ATAT-------------------TTG--------TA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

-TACTATTT-------------------------------------------GTGCGGCAGGA------AAAGTTGGGAGTTG-----CAATGGCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT-TA---AGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTT-GACCACATACAG--CAAATGG---T---GTAAG--TAACTAATATTG----------ACTA--------TA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	81.00	81	50	31
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	29.00	29	25	4
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	11.00	11	11	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	4.00	4	4	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	3.00	3	3	0
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	1.00	1	1	0
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	1.00	1	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	1.00	1	1	0
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	1.00	1	1	0
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	1.00	1	1	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	1.00	1	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	1.00	1	0	1

droVir3

-TTTTA-------------------------CAAACA---------------GTTCG----------AATGATGTTGGAGATG-----ATATGGCAGCGAAACTCTCAATTCCGTAGTGCATTGCAGTTGATT-TT---AGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGCT-GACCGCAGACAA--CGTATGG---A------------ATCGCAGCTC------ATCGGATG--------AA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	21021.00	21021	13	263	1479	326	667	61	456	6	21	7	0	5	1	15	1992	1178	434	1114	1106	708	73	1317	1459	309	291	291	80	96	223	113	22	100	5	74	58	3	24	16	1304	130	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	3	13	22	115	3965	242	0	22	254	5	4	78	18	29	110	20	30	34	80	14	17	47	55
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	18191.00	18191	2	188	1594	13	223	39	159	2	5	0	0	4	0	10	2173	1559	696	1064	1219	500	51	1334	1509	150	365	253	129	104	383	238	95	201	23	57	308	21	64	24	600	107	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	21	1999	56	0	17	330	7	5	59	11	10	54	6	20	13	52	2	6	30	26
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	7655.00	7655	2	34	463	1	37	48	36	25	1	4	0	0	0	0	667	381	294	416	571	219	76	681	562	30	84	75	34	38	592	397	103	306	4	62	39	3	3	2	144	111	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1000	9	0	4	62	0	0	2	3	2	10	1	3	4	2	0	0	1	3
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	4144.00	4144	10	385	168	14	37	9	54	2	1	2	1	0	0	4	199	164	109	187	307	130	37	356	220	44	23	16	8	3	66	75	20	51	2	27	24	4	4	1	161	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	5	1040	10	0	1	30	0	0	2	13	12	15	2	2	10	1	0	0	1	2
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	3632.00	3632	52	2125	69	0	12	36	24	2	0	4	0	1	0	0	33	34	15	19	41	30	40	52	40	26	4	7	4	2	134	134	27	82	0	88	4	1	1	0	38	103	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	221	5	0	0	3	0	0	0	19	21	29	19	15	15	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCA................................................................................	22	1	1096.00	1096	6	40	61	41	14	4	13	4	0	2	0	0	0	0	47	25	15	25	18	17	13	40	54	5	8	4	3	7	54	29	7	34	0	12	0	1	0	3	26	13	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	6	20	143	7	0	1	22	6	5	35	7	12	44	4	14	20	14	13	13	32	30
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	679.00	679	0	2	157	0	7	1	16	0	0	1	0	0	0	0	13	9	4	6	14	10	2	9	11	4	38	16	17	9	38	41	8	27	1	5	67	5	7	5	64	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	1	0	0	21	1	1	3	1	1	1	0	0	0	7	1	0	1	8
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	598.00	598	0	6	51	5	14	4	12	1	0	0	0	0	0	1	80	37	22	33	25	23	1	36	49	11	9	22	5	6	15	8	1	5	0	2	0	0	1	0	32	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	47	4	0	2	15	0	0	0	1	1	0	1	0	0	1	0	0	2	2
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGC.................................................................................	21	1	385.00	385	7	21	9	4	4	2	0	0	2	0	0	0	0	1	0	1	0	0	0	0	1	0	3	0	0	0	1	0	6	1	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	13	1	0	0	0	2	4	83	0	6	15	0	5	3	28	17	18	52	67
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAA........................................................................................................................	25	1	338.00	338	0	0	11	7	1	0	0	0	0	0	0	0	0	0	1	2	0	3	0	2	0	2	2	0	10	6	2	0	0	2	1	0	0	0	20	5	11	4	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	3	9	3	2	58	0	0	0	0	0	0	41	7	11	40	58
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	243.00	243	0	2	31	0	1	4	1	6	0	0	0	0	0	0	3	2	1	4	3	3	9	5	8	3	3	0	3	1	27	30	11	23	0	6	4	1	0	0	5	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	17	3	0	1	7	1	0	4	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	236.00	236	0	1	14	5	6	17	2	0	0	0	0	0	0	0	3	0	0	2	0	1	12	1	1	1	0	1	1	0	32	25	14	33	0	16	0	0	0	0	7	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	4	0	0	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCAA...............................................................................	23	1	187.00	187	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	3	5	4	38	1	0	0	0	0	0	27	9	10	30	47
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	181.00	181	0	0	11	0	7	0	2	0	1	0	0	0	0	0	18	9	2	9	5	12	0	14	7	3	2	2	2	1	4	2	0	0	0	1	0	0	0	1	17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	39	5	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	172.00	172	0	1	17	1	1	0	1	0	0	0	0	0	0	0	7	4	2	3	5	5	5	15	0	1	0	1	1	1	20	20	5	17	0	4	0	0	0	0	1	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	1	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	162.00	162	0	0	142	0	2	0	0	0	0	0	0	0	0	0	3	4	1	0	1	0	0	3	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	160.00	160	0	0	14	3	4	0	0	0	0	0	0	0	0	0	9	7	0	6	2	5	0	3	5	0	2	6	0	0	0	2	0	2	1	0	9	1	1	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	16	0	0	0	0	3	0	9	0	0	1	0	0	0	9	3	1	11	10
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	158.00	158	0	0	130	1	1	0	0	0	0	0	0	0	0	0	2	3	1	1	1	3	0	1	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	157.00	157	0	0	19	0	4	1	5	0	0	0	0	0	0	0	15	12	7	8	9	5	0	16	11	5	0	3	1	0	6	2	0	3	0	0	2	0	1	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	140.00	140	0	36	1	61	3	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	0	3	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	111.00	111	0	0	9	2	4	0	1	0	0	0	0	0	0	0	3	2	3	5	3	2	0	7	4	0	1	0	1	0	0	0	0	1	0	0	2	0	2	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	5	0	1	7	0	0	0	0	0	1	9	1	3	3	6
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	76.00	76	0	0	5	0	0	0	3	0	0	0	0	0	0	0	2	3	3	4	4	0	0	9	6	0	0	1	1	0	7	4	2	0	0	1	1	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAAA..........................................................................................................................	23	1	57.00	57	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	4	2	1	0	1	2	0	0	1	0	6	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	2	0	0	0	0	0	0	1	1	0	3	8
....................................................................................................................................................TGCAAGCGCTGCAGAATTGG..................................................................................	20	1	51.00	51	0	0	5	2	1	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	1	0	0	0	4	3	1	5	0	1	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	1	2	1	0	0	0	0	0	0	4	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	50.00	50	2	32	1	1	0	0	2	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	49.00	49	0	10	5	0	0	0	4	0	0	0	0	0	0	0	2	1	3	1	2	1	1	4	2	1	1	0	0	0	0	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTCC........................................................................................................................	25	1	48.00	48	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	8	8	3	8	0	6	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	47.00	47	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTT........................................................................................................................	25	1	41.00	41	0	0	4	0	0	0	0	0	0	1	0	0	0	0	6	3	1	8	2	0	0	1	5	0	0	1	0	0	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTA........................................................................................................................	25	1	37.00	37	0	0	4	0	1	0	0	0	0	0	0	0	0	0	4	0	0	1	1	1	0	2	1	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	6	0	0	0	0	0	0	4	0	0	0	4
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTC........................................................................................................................	25	1	35.00	35	1	0	2	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	10	2	2	6	0	4	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	34.00	34	0	0	5	0	0	0	2	0	0	0	0	0	0	0	2	1	1	2	0	1	0	2	0	3	0	0	0	0	2	1	0	1	0	1	1	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	1
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	30.00	30	0	0	6	1	0	0	1	0	0	0	0	0	0	0	2	1	1	2	0	0	0	1	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	3	0	0	2	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................CTCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	24	1	30.00	30	0	0	6	4	1	0	0	0	0	0	0	0	0	0	0	3	0	2	0	1	0	3	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	28.00	28	0	0	1	0	1	0	0	0	0	0	0	0	0	0	3	2	0	4	2	1	0	0	3	0	2	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	26.00	26	0	0	1	0	2	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	26.00	26	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	2	1	0	3	1	0	0	2	1	0	0	0	0	1	2	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	26.00	26	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	3	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCCT...........................................................................................................................	22	1	26.00	26	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	4	3	3	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCAT...............................................................................	23	1	25.00	25	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	4	2	2	4	4
........................................................................................................CTCAATTCCGTAGTGCATTGCAG...........................................................................................................................	23	1	24.00	24	0	0	7	0	1	0	0	0	0	0	0	0	0	0	2	1	0	1	0	1	0	1	1	0	0	1	0	0	3	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAAAA.........................................................................................................................	24	1	20.00	20	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	2	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	19.00	19	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	19.00	19	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCCC...........................................................................................................................	22	1	16.00	16	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	1	1	1	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCC................................................................................	22	1	16.00	16	2	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	1	1	2	0	3	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAT........................................................................................................................	25	1	16.00	16	0	0	3	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTCT........................................................................................................................	25	1	15.00	15	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	2	3	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCAAA..............................................................................	24	1	13.00	13	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	2	3	1	3
..............................................................................................................TCCGTAGTGCATTGCAGT..........................................................................................................................	18	1	12.00	12	0	0	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAA...........................................................................................................................	21	1	12.00	12	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGT.............................................................................................................................	20	1	12.00	12	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	1	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCCA...........................................................................................................................	22	1	11.00	11	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAAA........................................................................................................................	25	1	11.00	11	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	0	0
.............................................................................................................TTCCGTAGTGCATTGCAG...........................................................................................................................	18	1	10.00	10	0	0	2	0	2	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	10.00	10	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTG........................................................................................................................	25	1	9.00	9	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAT...........................................................................................................................	21	1	9.00	9	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TG-----ATATGGCAGCGAAACTC.................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	4	1	0	0	0	0	0	0	0	0
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	8.00	8	0	0	4	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CTCAATTCCGTAGTGCATTGCA............................................................................................................................	22	1	7.00	7	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTG..............................................................................................................................	18	1	7.00	7	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCAC...............................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	1	2
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCATA..............................................................................	24	1	7.00	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	2	1
.....................................................................................................................................................GCAAGCGCTGCAGAATTGGCA................................................................................	21	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTG...................................................................................	19	1	7.00	7	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................ATG-----ATATGGCAGCGAAACTC.................................................................................................................................................	20	1	6.00	6	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTCA........................................................................................................................	25	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................CTCAATTCCGTAGTGCATTGC.............................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AGCGCTGCAGAATTGGCA................................................................................	18	1	6.00	6	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCATC..........................................................................................................................	23	1	6.00	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAA...........................................................................................................................	20	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTT..............................................................................................................................	19	1	5.00	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGA........................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAAC.......................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCTA...........................................................................................................................	22	1	5.00	5	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCA............................................................................................................................	18	1	4.00	4	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCC............................................................................................................................	20	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	23	1	4.00	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCT................................................................................	22	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAAT.......................................................................................................................	26	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1

droMoj3

-ATTTATTTATGTACAAACTTTCGCATTGAACAAACAGTTAAGCGACTGCGAGTGCG----------A-----GTGCGAGTTGATTATCAATGGCTGCGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT-TA---AGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGTT-GACCACAGACAG--CATATGG--------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	14127.00	14127	805	65	5003	6953	714	587
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	5336.00	5336	496	3	1908	2828	20	81
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	4807.00	4807	88	0	1962	2709	3	45
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	1512.00	1512	107	1	609	776	2	17
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	768.00	768	24	0	307	428	0	9
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCA................................................................................	22	1	659.00	659	31	19	230	291	85	3
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	196.00	196	0	0	6	26	164	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	185.00	185	21	0	58	88	7	11
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	139.00	139	11	1	56	66	5	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	95.00	95	70	0	7	12	6	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGC.................................................................................	21	1	90.00	90	3	3	32	45	7	0
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	53.00	53	3	0	17	33	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	51.00	51	2	0	18	30	1	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGG..................................................................................	20	1	48.00	48	5	0	17	26	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	48.00	48	2	0	17	29	0	0
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	43.00	43	2	0	18	23	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	43.00	43	38	0	1	4	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	29.00	29	0	0	16	13	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	26.00	26	2	0	11	13	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	21.00	21	0	0	6	15	0	0
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	17.00	17	1	0	6	10	0	0
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	16.00	16	8	0	3	5	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	15.00	15	15	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	14.00	14	0	0	3	11	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	12.00	12	0	0	7	5	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	10.00	10	0	0	4	5	0	1
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	10.00	10	2	0	4	3	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGT.............................................................................................................................	20	1	9.00	9	1	0	2	6	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	8.00	8	0	0	2	5	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	7.00	7	0	0	0	5	2	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	6.00	6	1	0	3	2	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTT........................................................................................................................	25	1	5.00	5	0	0	0	5	0	0
.........................................................................................................TCAATTCCGTAGTGCATTT..............................................................................................................................	19	1	5.00	5	0	0	4	1	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCT................................................................................	22	1	5.00	5	0	0	3	2	0	0
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	5.00	5	1	0	2	0	2	0
..............................................................................................................TCCGTAGTGCATTGCAGT..........................................................................................................................	18	1	5.00	5	3	0	0	1	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	4.00	4	0	0	0	1	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGA........................................................................................................................	25	1	4.00	4	0	0	2	2	0	0
...........................................................................................................AATTCCGTAGTGCATTG..............................................................................................................................	17	1	4.00	4	0	0	0	4	0	0
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	4.00	4	0	0	3	1	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCAT...............................................................................	23	1	4.00	4	0	0	2	2	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGCC................................................................................	22	1	4.00	4	0	0	2	2	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTA........................................................................................................................	25	1	4.00	4	1	0	0	1	1	1
....................................................................................................................................................TGCAAGCGCTGCAGAATTG...................................................................................	19	1	4.00	4	0	0	2	2	0	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	4.00	4	0	0	2	2	0	0
....................................................................................................................................................TGCAAGCGCTGCAGAATTGGT.................................................................................	21	1	3.00	3	1	0	0	2	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGT........................................................................................................................	25	1	2.00	2	0	0	0	2	0	0

droWil2

--------------------------------------------------------------------------------------------GGCATTGTAGCTATCAATTCCGTAGTGCATTGCAGTTGGTA-CT---AGAAAATACTGCAAGCGCTGCGGACTTGCTAACTCTGAT-GACCATA----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	16026.00	16026	2360	351	159	2165	10991
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	4323.00	4323	1093	194	23	67	2946
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	3916.00	3916	126	27	5	14	3744
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	2997.00	2997	2844	0	0	0	153
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	1896.00	1896	593	4	7	2	1290
....................................................................................................................................................TGCAAGCGCTGCGGACTTGCTA................................................................................	22	1	514.00	514	107	5	1	141	260
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	202.00	202	198	0	0	0	4
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	179.00	179	22	3	0	5	149
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	171.00	171	151	0	0	1	19
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	112.00	112	0	1	1	12	98
....................................................................................................................................................TGCAAGCGCTGCGGACTTGC..................................................................................	20	1	87.00	87	85	0	0	0	2
....................................................................................................................................................TGCAAGCGCTGCGGACTTG...................................................................................	19	1	75.00	75	47	0	0	0	28
....................................................................................................................................................TGCAAGCGCTGCGGACTTGCT.................................................................................	21	1	70.00	70	41	0	0	7	22
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	63.00	63	1	0	0	6	56
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	58.00	58	4	19	0	1	34
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	45.00	45	1	0	2	0	42
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	44.00	44	1	0	0	0	43
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	30.00	30	2	1	0	0	27
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	19.00	19	0	1	0	0	18
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	19.00	19	3	11	0	0	5
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	18.00	18	16	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	11.00	11	1	1	0	0	9
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	11.00	11	8	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	8.00	8	5	0	0	0	3
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	8.00	8	1	2	0	0	5
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	7.00	7	0	0	0	0	7
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	7.00	7	0	2	0	0	5
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	7.00	7	3	0	0	0	4
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	7.00	7	0	0	0	0	7
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	6.00	6	3	0	0	0	3
....................................................................................................................................................TGCAAGCGCTGCGGACTTGCC.................................................................................	21	1	6.00	6	5	0	0	0	1
..............................................................................................................TCCGTAGTGCATTGCAGT..........................................................................................................................	18	1	6.00	6	5	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	5.00	5	0	0	0	0	5
..........................................................................................................CAATTCCGTAGTGCATTG..............................................................................................................................	18	1	5.00	5	4	0	0	0	1
.............................................................................................................TTCCGTAGTGCATTGCAG...........................................................................................................................	18	1	5.00	5	3	1	0	0	1
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	5.00	5	0	0	0	0	5
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	5.00	5	0	0	0	0	5
.......................................................................................................................................................AAGCGCTGCGGACTTGCT.................................................................................	18	1	4.00	4	4	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGAGT...........................................................................................................................	22	1	4.00	4	0	0	0	0	4
...................................................................................................................................................CTGCAAGCGCTGCGGACTTGC..................................................................................	21	1	4.00	4	4	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTA..............................................................................................................................	19	1	3.00	3	3	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTT..............................................................................................................................	19	1	3.00	3	1	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAA.........................................................................................................................	24	1	3.00	3	1	1	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	3.00	3	1	0	0	0	2
..........................................................................................................CAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	23	1	3.00	3	0	1	0	0	2
...........................................................................................................AATTCCGTAGTGCATTGCAGTA.........................................................................................................................	22	1	2.00	2	0	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGT........................................................................................................................	25	1	2.00	2	0	0	0	0	2
...................................................................................................................................................CTGCAAGCGCTGCGGACTTGCT.................................................................................	22	1	2.00	2	2	0	0	0	0
.................................................................................................................................................TACTGCAAGCGCTGCGGACTTG...................................................................................	22	1	2.00	2	2	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGG.............................................................................................................................	20	1	2.00	2	2	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTT........................................................................................................................	25	1	2.00	2	0	0	0	1	1
........................................................................................................ATCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	24	1	2.00	2	0	2	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAA........................................................................................................................	25	1	2.00	2	0	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	2.00	2	0	0	0	1	1
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	2.00	2	0	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATGCA.............................................................................................................................	20	6	1.50	9	0	0	0	0	9
....................................................................................................................................................TGCAAGCGCTGCGGACTTGCG.................................................................................	21	1	1.00	1	1	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTAA.......................................................................................................................	26	1	1.00	1	0	0	0	0	1
...........................................................................................................AATTCCGTAGTGCATTGT.............................................................................................................................	18	1	1.00	1	0	0	0	0	1
....................................................................................................................................................TGCAAGCGCTGCGGACTTGCTC................................................................................	22	1	1.00	1	0	0	0	1	0

dp5

TG--------------------------------------------------------------------------------------CATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCTGC------AGCAGCGA-------TAGTGATA----------GCGA--------TG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	16475.00	16475	4	895	771	7716	414	6397	204	0	5	69
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	3303.00	3303	0	529	17	704	15	1940	27	0	15	56
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	1735.00	1735	0	0	221	1492	1	21	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	685.00	685	0	60	34	426	14	143	3	0	0	5
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	540.00	540	0	86	1	138	3	307	4	0	1	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCA................................................................................	22	1	536.00	536	18	93	48	71	36	187	7	0	2	74
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	327.00	327	0	19	0	140	1	163	4	0	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGC.................................................................................	21	1	231.00	231	3	38	10	47	9	107	15	0	0	2
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	173.00	173	0	76	6	76	1	12	2	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	120.00	120	0	3	4	38	8	65	1	0	0	1
....................................................................................................................................................TGCAAGCGCTGTGGACTTGG..................................................................................	20	1	81.00	81	0	31	0	3	0	37	4	0	1	5
........................................................................................................CTCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	24	1	80.00	80	0	1	4	72	1	2	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	57.00	57	0	5	0	30	1	20	1	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	50.00	50	0	40	0	5	0	4	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	50.00	50	0	0	0	32	2	16	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	48.00	48	0	0	6	39	0	3	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	35.00	35	1	4	0	2	0	27	0	0	1	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGC..........................................................................................................................	22	1	23.00	23	0	0	2	21	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	23.00	23	0	0	3	17	0	3	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	23.00	23	0	0	1	16	0	6	0	0	0	0
........................................................................................................CTCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	24	1	19.00	19	0	0	1	18	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	19.00	19	0	3	0	1	0	15	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	19.00	19	0	4	1	11	0	3	0	0	0	0
...................................................................................................................................................CTGCAAGCGCTGTGGACTTGGCA................................................................................	23	1	16.00	16	0	2	1	2	2	8	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	13.00	13	0	1	0	8	0	4	0	0	0	0
...................................................................................................................................................CTGCAAGCGCTGTGGACTTGGC.................................................................................	22	1	13.00	13	0	1	2	0	2	4	0	0	0	4
...........................................................................................................AATTCCGTAGTGCATTGCAGC..........................................................................................................................	21	1	13.00	13	0	0	1	12	0	0	0	0	0	0
........................................................................................................CTCAATTCCGTAGTGCATTGCAG...........................................................................................................................	23	1	13.00	13	0	0	0	10	0	3	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	23	1	12.00	12	0	7	0	3	0	2	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	10.00	10	0	7	0	2	0	1	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	10.00	10	0	1	0	2	0	7	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTT........................................................................................................................	25	1	9.00	9	0	2	0	6	0	1	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	8.00	8	0	6	0	2	0	0	0	0	0	0
..............................................................................................................TCCGTAGTGCATTGCAGT..........................................................................................................................	18	1	8.00	8	0	2	0	5	0	1	0	0	0	0
.......................................................................................................TCTCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	25	1	7.00	7	0	0	0	7	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGT.................................................................................	21	1	7.00	7	0	2	0	0	0	5	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	5.00	5	0	1	0	2	0	2	0	0	0	0
.....................................................................................................................................................GCAAGCGCTGTGGACTTGGC.................................................................................	20	1	5.00	5	0	5	0	0	0	0	0	0	0	0
TG--------------------------------------------------------------------------------------CATTGGTGTCGTGGCTC.................................................................................................................................................	19	1	4.00	4	0	0	0	1	0	3	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	4.00	4	0	0	0	0	0	4	0	0	0	0
........................................................................................................CTCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	25	1	4.00	4	0	0	0	4	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTG...................................................................................	19	1	4.00	4	0	0	0	1	0	2	1	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAGC..........................................................................................................................	20	1	4.00	4	0	0	1	3	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCAT...............................................................................	23	1	4.00	4	0	0	0	2	0	2	0	0	0	0
........................................................................................................CTCAATTCCGTAGTGCATTGCA............................................................................................................................	22	1	4.00	4	0	0	0	4	0	0	0	0	0	0
................................................................................................................................TTAATATAATTATCAACAAC......................................................................................................	20	1	4.00	4	0	0	0	4	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAA........................................................................................................................	25	1	4.00	4	0	0	0	4	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	3.00	3	0	0	0	0	0	3	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	3.00	3	0	0	0	1	0	2	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAAC..........................................................................................................................	23	1	3.00	3	0	0	0	3	0	0	0	0	0	0
.......................................................................................................................................................AAGCGCTGTGGACTTGGC.................................................................................	18	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTTT........................................................................................................................	23	1	2.00	2	0	1	0	1	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	2.00	2	0	0	0	1	0	1	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTA........................................................................................................................	25	1	2.00	2	0	0	0	1	0	1	0	0	0	0
.G--------------------------------------------------------------------------------------CATTGGTGTCGTGGCTC.................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	2.00	2	0	1	0	0	0	1	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCT................................................................................	22	1	2.00	2	0	0	0	0	0	2	0	0	0	0
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	2.00	2	0	0	0	1	0	1	0	0	0	0
.....................................................................................................................................................GCAAGCGCTGTGGACTTGG..................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	2.00	2	0	0	0	1	0	1	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCAA...............................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................CTGCAAGCGCTGTGGACTTGG..................................................................................	21	1	2.00	2	0	1	0	0	0	1	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCC................................................................................	22	1	2.00	2	0	0	0	1	0	1	0	0	0	0
.......................................................................................................TCTCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.............................................................................................................TTCCGTAGTGCATTGCAG...........................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................GCAAGCGCTGTGGACTTGGCA................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0

droPer2

TG--------------------------------------------------------------------------------------CATTGGTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGAT-AGCCGCAAACACAGCTGC------AGCAGCGA-------TAGTGATA----------GCGA--------TG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	17110.00	17110	16	171	100	7562	8537	724
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	6322.00	6322	8	108	6	2717	3382	101
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	973.00	973	0	4	1	234	730	4
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCA................................................................................	22	1	901.00	901	277	12	5	230	354	23
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	794.00	794	0	6	0	394	384	10
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	342.00	342	0	3	1	189	139	10
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGC.................................................................................	21	1	297.00	297	20	1	6	111	135	24
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	161.00	161	18	1	0	27	114	1
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	156.00	156	0	1	0	73	82	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGG..................................................................................	20	1	72.00	72	0	0	0	26	39	7
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	59.00	59	0	0	0	23	35	1
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	59.00	59	0	0	0	23	36	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	58.00	58	2	0	0	23	31	2
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	39.00	39	0	9	0	16	14	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	38.00	38	0	0	0	21	16	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	28.00	28	0	0	0	10	18	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTG...................................................................................	19	1	27.00	27	0	0	0	1	20	6
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	25.00	25	0	1	1	13	10	0
...................................................................................................................................................CTGCAAGCGCTGTGGACTTGGCA................................................................................	23	1	18.00	18	10	0	0	2	6	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCG................................................................................	22	1	18.00	18	17	0	0	0	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	16.00	16	4	0	0	6	6	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGT.................................................................................	21	1	15.00	15	0	0	0	5	10	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	13.00	13	0	8	0	4	1	0
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	11.00	11	0	0	0	4	7	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	11.00	11	0	0	0	2	9	0
........................................................................................................CTCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	24	1	11.00	11	0	0	1	5	4	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	11.00	11	0	0	0	4	7	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGCT................................................................................	22	1	8.00	8	0	1	0	2	5	0
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	7.00	7	0	0	0	4	3	0
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	6.00	6	0	0	0	1	5	0
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	5.00	5	0	0	0	1	4	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTT........................................................................................................................	25	1	5.00	5	0	0	0	5	0	0
...................................................................................................................................................CTGCAAGCGCTGTGGACTTGGC.................................................................................	22	1	5.00	5	2	0	0	2	1	0
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	5.00	5	0	0	0	2	3	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	5.00	5	0	0	0	3	2	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	5.00	5	1	0	0	0	4	0
.........................................................................................................TCAATTCCGTAGTGCATTGCATC..........................................................................................................................	23	1	4.00	4	0	0	0	0	4	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	4.00	4	0	0	0	1	3	0
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	4.00	4	0	0	0	2	2	0
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	4.00	4	0	0	0	1	3	0
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	4.00	4	0	1	0	2	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCCT...........................................................................................................................	22	1	4.00	4	0	0	0	1	3	0
........................................................................................................CTCAATTCCGTAGTGCATTGCAG...........................................................................................................................	23	1	4.00	4	0	0	0	2	2	0
TG--------------------------------------------------------------------------------------CATTGGTGTCGTGGCTC.................................................................................................................................................	19	1	4.00	4	0	0	1	2	1	0
......................................................................................................................................................CAAGCGCTGTGGACTTGGCA................................................................................	20	1	3.00	3	2	0	0	1	0	0
....................................................................................................................................................TGCAAGCGCTGTGGACTTGGA.................................................................................	21	1	3.00	3	0	0	0	0	3	0
.........................................................................................................TCAATTCCGTAGTGCATTGCATG..........................................................................................................................	23	1	3.00	3	0	0	0	1	2	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	3.00	3	0	0	0	2	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	3.00	3	0	0	0	1	2	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTA.........................................................................................................................	22	1	2.00	2	0	0	0	2	0	0
.......................................................................................................................................................AAGCGCTGTGGACTTGGCA................................................................................	19	1	2.00	2	0	0	0	1	1	0

droAna3

-----------------------------------------------------------------------------------------------------ACTTTCAATTCCGTAGTGCATTGCAGTGTTTT-TA---AACTACAACTGCATGCTCTGCGGACTTGGCAGATTTGAA-GACCAGGAGCAA--CTTTTAA---G------------AACAATATTT----------AACA--------AA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	8398.00	8398	327	297	15	4434	833	2492
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	3855.00	3855	209	13	2	2626	143	862
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	2983.00	2983	43	0	0	405	33	2502
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	2422.00	2422	20	1	1	1097	66	1237
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	428.00	428	9	0	0	224	20	175
....................................................................................................................................................TGCATGCTCTGCGGACTTGGCA................................................................................	22	1	390.00	390	32	23	1	81	7	246
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	299.00	299	25	0	0	157	9	108
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	134.00	134	2	100	0	27	1	4
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	82.00	82	3	0	1	36	4	38
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	69.00	69	3	0	0	19	0	47
....................................................................................................................................................TGCATGCTCTGCGGACTTGGC.................................................................................	21	1	66.00	66	6	9	0	5	1	45
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	47.00	47	1	0	1	28	4	13
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	44.00	44	27	2	0	9	3	3
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	43.00	43	0	0	0	23	1	19
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	43.00	43	0	1	0	40	1	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	34.00	34	0	0	0	12	0	22
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	26.00	26	0	0	0	26	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	22.00	22	0	0	0	12	0	10
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	20.00	20	0	0	0	7	0	13
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	19.00	19	9	0	0	5	0	5
....................................................................................................................................................TGCATGCTCTGCGGACTTGG..................................................................................	20	1	17.00	17	7	0	0	8	1	1
....................................................................................................................................................TGCATGCTCTGCGGACTTG...................................................................................	19	1	15.00	15	0	0	0	2	0	13
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	14.00	14	1	1	0	3	1	8
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	13.00	13	0	0	0	4	1	8
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	12.00	12	0	0	0	12	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	11.00	11	0	1	0	7	1	2
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	11.00	11	0	0	0	5	0	6
.........................................................................................................TCAATTCCGTAGTGCATTGT.............................................................................................................................	20	1	9.00	9	0	0	0	8	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	7.00	7	0	0	0	3	1	3
..........................................................................................................CAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	23	1	6.00	6	5	0	0	0	0	1
....................................................................................................................................................TGCATGCTCTGCGGACTTGGT.................................................................................	21	1	6.00	6	0	0	0	1	3	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	6.00	6	0	0	0	6	0	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	6.00	6	0	0	0	6	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGTT............................................................................................................................	21	1	5.00	5	0	0	0	1	0	4
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	5.00	5	2	0	0	1	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCATC..........................................................................................................................	23	1	5.00	5	0	0	0	5	0	0
.........................................................................................................TCAATTCCGTAGTGCATTCA.............................................................................................................................	20	1	5.00	5	0	0	0	0	0	5
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTG........................................................................................................................	25	1	5.00	5	0	0	0	4	0	1
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	5.00	5	2	0	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTT..............................................................................................................................	19	1	5.00	5	0	0	0	3	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGT........................................................................................................................	25	1	4.00	4	0	0	0	3	0	1
.....................................................................................................................................................GCATGCTCTGCGGACTTGGCA................................................................................	21	1	4.00	4	4	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	4.00	4	0	1	0	3	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCTT...........................................................................................................................	22	1	3.00	3	0	0	0	3	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCGT...........................................................................................................................	22	1	3.00	3	0	0	0	3	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTA........................................................................................................................	25	1	2.00	2	0	0	0	1	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTC........................................................................................................................	25	1	2.00	2	0	1	0	0	0	1
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	2.00	2	0	0	0	2	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGA..........................................................................................................................	21	1	2.00	2	0	0	0	1	0	1

droBip1

-----------------------------------------------------------------------------------------------------ACTTTCAATTCCGTAGTGCATTGCAGTGTTTT-TA---AAGTTCTACTGCAAGCTCTGCGGACTTGGCAGATTTGAA-AACCAACAGCAA--CTGTCAA---TAAAA-----------AGATTTA----------AC-AAAAATGTGAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------------------------------------------------------------------------------------AATGGTATCGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTTTC-AA---AGTCCCAACTGCAAGCATTGTGGGATTGGCAGCATTGACCCACCATGAACAT--CGCCTGA----------------AACAGAATCG----------CCTG--------TG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT-TA---ATTATCAACCGCAAGCGCTGCGGATTTGGCAACTTTGAT-GGCCTCCATCAT--CTGCTAA---TTAAATGTA--AAATTATGA-------ATAATGATTA--------TA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-------------------------------------------------------------------------------------------------TGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTACT-TA---ATTAGCAACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCATG---TCGAATGTA--AAGTAATTATCAACTAATA---TAAA--------CA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TT---ACTATCTACTGCAAGCGCAGCGGATTTGGCAACTTTGAC-GACCTTTATCAT--CTGTAAG---TCAAAAGTG--AAGTTAATAGTCACTAATAATGACAG--------CA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----------------------------------------------------------------------------------------AAAGGTATTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT-AA---GCTATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCAACAT--CTGCTGG---CGAAATGTGTAAAAT------TA----------AAAC--------CA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGCT-TA---AAAATCTACTGCAAGCGCTGCGGATTTGGCAACTTTGAG-GACCTTCATCAT--CTGCTAG---TCAAATGTG--AA----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

-----------------------------------------------------------------------------------------AAAGGTATTGAAGCTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TA---AATATCAACTGCAAGCGCTGCGGACTTGGCAACTTTGAT-GACCTTCATCAT--CTAATAG---TCAAATGTA--AAAAACTTA-------AA-------ATTTATGACAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TC---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCTAG---AGAAATGTG--AAATTTGTAGTA----------ACCA--------TA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	77149.00	77149	0	0	0	0	181	6	0	0	1	28	2	12	8	0	41	7	0	43	34	0	0	2	8	3	0	13	6	5	26	48	1131	1248	4	5	0	6	13	3	10	2	0	8	30	1	1	12	9	6	10	11	10	12	6	0	0	0	6	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	15	10	11	254	10	0	1	7	0	2	55	5	60	80	605	71	140	1277	39	126	33	17	208	208	6587	16	2	1	60	148	26	46	7	134	7	92	12	65	12	1302	205	6	207	3	346	74	345	8	900	83	1271	671	0	1	0	0	0	0	0	0	0	0	3	4	2	0	3	13	21	26	18	8	9	4	12	5	5	0	0	0	0	1	3	0	0	9	0	9	2982	4398	0	2478	12	5	721	1441	52	1230	30	1594	65	2240	192	0	1	4	1	0	2440	28	33	4	14	0	0	0	17	0	34	9	1	0	0	0	0	9	7	0	0	0	4	0	0	14	4	7	14	78	26	50	74	36	138	38	28	44	69	35	44	8	5	40	0	2	0	0	902	743	0	213	1421	35	11	6	20	383	1200	4	222	3	55	4	9	212	957	3	1	13	13	5	108	1	47	2	19	28	676	29	4	0	16	91	16	75	20	68	5	30	1	1	50	116	102	2148	2657	2655	3695	22	952	703	299	12	30	8	46	16	34	1256	62	763	968	1	7	18	29	49	148	40	19	79	356	201	37	666	89	3	5	189	9514	284	117	681	216	205	30	2	1	22	6	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	39878.00	39878	0	0	0	0	242	1	0	1	0	2	1	4	0	0	42	8	1	52	14	0	1	2	3	35	0	7	0	6	13	43	713	830	4	3	3	1	7	2	1	1	0	0	25	3	1	3	1	3	6	3	11	3	1	0	0	0	12	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	9	8	5	547	14	0	0	0	0	2	41	7	25	42	909	25	54	1596	60	156	12	18	52	82	9641	24	3	2	40	120	25	29	15	56	6	22	9	51	2	614	66	4	57	1	240	28	123	3	711	89	857	507	0	0	0	0	0	0	0	0	3	0	2	1	2	0	0	6	2	8	3	1	2	0	3	5	0	0	1	0	0	1	1	0	0	0	0	0	1769	1930	0	1355	4	6	382	992	48	779	18	1342	61	1577	138	0	2	0	0	0	1258	41	20	9	2	0	0	0	40	0	10	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	9	44	7	40	32	16	71	37	29	24	30	24	5	1	0	12	0	3	0	0	24	43	0	67	469	6	3	0	4	140	479	0	143	1	28	0	1	12	446	1	0	5	1	0	32	1	19	1	3	4	129	3	1	0	2	28	10	41	14	54	1	25	0	1	7	19	23	737	914	798	1287	1	21	112	51	1	7	5	17	3	9	214	7	75	93	0	0	3	6	11	22	0	1	0	17	17	1	22	5	0	1	18	1600	45	9	67	17	13	4	0	0	1	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	13716.00	13716	0	0	0	0	72	1	0	0	0	0	0	4	0	0	16	1	0	9	4	0	0	0	2	0	0	0	0	6	22	35	661	634	5	6	0	1	2	0	1	0	0	0	10	0	0	0	0	1	1	2	1	1	1	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	1	139	5	0	1	3	0	1	6	0	2	5	203	3	10	815	9	22	1	1	3	11	1822	4	0	1	24	33	8	2	5	5	4	1	2	16	8	178	99	3	20	0	87	59	191	3	257	16	266	205	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	3	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	609	673	0	375	10	6	107	700	39	693	22	480	2	491	34	0	0	0	0	0	396	15	1	2	0	4	0	0	8	0	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	38	1	11	6	7	9	4	3	3	7	5	0	0	0	2	1	0	0	0	2	2	0	37	284	10	0	1	2	112	571	0	99	0	7	0	0	3	111	0	0	1	0	0	4	0	8	0	2	3	30	1	0	0	1	4	3	12	1	11	2	2	0	0	0	8	5	237	228	178	297	0	1	6	2	0	0	2	0	0	0	24	1	17	16	1	2	2	0	0	7	0	0	1	6	0	0	3	1	0	0	5	460	6	2	8	2	1	3	0	0	2	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	9131.00	9131	0	0	0	0	38	1	0	0	0	0	0	0	0	0	6	0	0	2	1	0	1	0	1	5	0	0	0	0	8	5	172	197	0	4	5	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	104	0	0	0	0	0	0	6	0	1	0	88	1	1	229	10	7	0	1	1	5	1189	1	0	0	3	17	6	5	2	4	0	0	0	4	0	218	3	2	3	0	13	3	0	0	156	12	167	134	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	246	520	0	159	1	1	67	227	5	195	12	493	8	437	45	0	0	0	0	0	234	9	0	6	1	2	0	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	1	9	4	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	1	2	0	26	282	4	0	0	0	48	407	1	34	1	2	0	0	2	62	1	0	0	0	0	3	0	10	0	0	0	21	3	0	0	0	5	1	4	2	7	0	2	0	0	2	2	3	422	277	456	703	0	0	3	2	0	3	4	0	0	0	62	1	20	33	0	2	1	0	0	5	0	0	0	4	1	1	1	0	0	0	10	610	3	1	1	1	1	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCA................................................................................	22	1	7903.00	7903	0	0	0	0	2	0	0	0	0	6	0	0	1	0	7	0	0	5	0	0	0	0	0	0	0	0	0	9	13	11	118	65	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	4	0	0	0	0	0	0	4	2	3	2	13	3	6	22	1	0	0	0	7	11	102	0	0	0	0	2	0	0	0	4	0	2	1	0	1	90	27	2	12	0	17	16	84	0	44	4	39	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	81	144	0	98	23	10	94	79	12	123	13	132	44	158	57	0	0	0	0	0	341	6	1	2	3	2	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	5	3	2	0	1	1	0	1	1	5	0	9	3	1	3	0	0	0	0	62	66	0	15	63	1	3	0	1	29	109	0	11	0	5	0	0	6	135	0	0	0	3	2	3	0	5	0	2	1	23	0	0	0	2	7	1	8	1	9	1	2	0	0	1	14	7	501	495	314	501	3	144	43	24	1	8	2	6	7	12	163	18	209	224	0	1	1	14	7	25	5	2	22	82	12	5	69	11	2	3	51	1843	50	29	58	14	38	1	1	1	2	1	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGC.................................................................................	21	1	3013.00	3013	0	0	0	0	2	0	0	0	0	0	0	0	0	0	8	2	9	5	0	0	0	0	0	0	0	0	0	8	13	17	16	9	0	2	0	0	1	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	12	0	0	0	0	0	0	25	0	0	0	0	3	0	0	0	3	0	0	0	0	4	19	27	0	5	0	6	7	21	0	8	2	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	18	13	0	17	22	9	22	9	19	18	16	16	57	14	95	0	1	0	0	0	52	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	6	0	1	0	0	0	0	0	0	3	0	1	0	0	0	0	0	8	6	1	3	40	0	0	0	0	12	62	0	5	0	4	0	0	3	100	0	0	0	0	0	2	1	1	0	1	0	6	0	0	0	1	2	1	1	2	7	0	0	0	1	0	2	1	221	227	124	213	0	16	7	5	2	2	0	1	0	3	47	6	40	43	0	1	1	5	2	38	3	1	2	40	14	4	34	3	0	1	14	882	17	11	6	10	9	6	0	0	5	1	0
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	2361.00	2361	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	1	0	2	0	0	0	0	2	1	18	37	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	23	0	0	0	0	0	0	6	1	0	0	24	0	2	82	0	4	0	0	0	1	238	1	0	0	3	0	2	0	0	0	1	0	0	0	0	44	0	1	2	0	2	0	0	0	26	3	34	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	49	101	0	27	0	0	14	42	1	20	3	123	1	81	7	0	0	0	0	0	25	3	0	1	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	29	0	0	0	0	4	130	1	8	0	0	0	0	0	5	0	0	0	0	0	0	0	2	0	0	0	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	89	43	84	190	0	0	0	0	0	0	0	0	0	0	16	2	9	15	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	5	611	2	0	3	0	1	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGG..................................................................................	20	1	2215.00	2215	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	1	5	2	0	0	0	0	0	0	0	0	0	6	3	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	6	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	1	0	0	0	0	0	17	3	0	1	0	3	3	4	0	5	1	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	8	25	0	16	7	8	17	4	9	15	9	13	55	11	94	0	0	0	0	0	26	2	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	25	0	0	0	0	1	51	0	3	0	2	0	0	3	23	0	0	1	0	0	1	0	0	0	0	0	2	0	0	0	0	1	1	0	0	4	0	0	0	0	0	4	1	127	207	138	261	0	2	8	6	1	1	1	0	1	0	7	1	11	20	0	0	0	3	3	10	0	0	0	7	5	0	4	0	0	0	12	793	8	1	6	7	5	1	0	0	0	0	0
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...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	557.00	557	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0	2	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	33	0	16	0	0	6	8	0	5	0	5	2	10	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	15	10	0	3	8	1	0	0	0	4	9	0	2	0	0	0	0	1	17	0	0	1	0	0	0	0	1	0	0	0	3	0	0	0	0	2	0	0	0	1	1	0	0	0	0	0	1	28	37	28	53	0	24	15	7	0	0	0	1	0	1	18	0	9	5	0	0	0	0	4	0	0	0	2	2	0	1	7	0	0	0	0	65	1	0	3	3	3	0	0	0	0	0	0
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...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	44.00	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	3	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	5	6	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGT.................................................................................	21	1	41.00	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGA.................................................................................	21	1	36.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	35.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	5	0	1	0	0	1	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTTC........................................................................................................................	25	1	31.00	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GCAAGCGCTGCGGATTTGGCA................................................................................	21	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	1	0	2	0	0	1	0	2	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCCT...........................................................................................................................	22	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	12	0	4	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAT.........................................................................................................................	24	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TA---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCTAG---AGAAATGTG--AAATTTGTAGTA----------ACCA--------TA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	12747.00	12747	11977	79	35	1	18	637	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	6610.00	6610	1194	23	2	32	114	5228	0	0	0	1	8	2	1	5	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	4887.00	4887	1748	25	62	31	48	2778	0	0	5	16	13	158	0	2	1	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	2883.00	2883	2123	15	3	1	15	724	0	0	0	0	1	0	0	1	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	2028.00	2028	19	0	0	0	43	1966	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	1838.00	1838	245	4	0	4	36	1544	0	0	1	0	1	3	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCA................................................................................	22	1	913.00	913	754	24	67	4	0	11	0	2	5	3	1	31	3	8	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGC.................................................................................	21	1	209.00	209	177	1	15	1	0	3	0	1	3	0	0	8	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	187.00	187	178	2	6	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	145.00	145	135	4	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	72.00	72	0	0	0	0	1	70	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCT................................................................................	22	1	47.00	47	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	45.00	45	0	0	0	0	1	44	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGT.............................................................................................................................	20	1	38.00	38	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	27.00	27	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTG...................................................................................	19	1	24.00	24	7	0	0	0	1	16	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGG..................................................................................	20	1	21.00	21	4	0	0	4	0	8	0	1	0	1	1	0	0	2	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGTT............................................................................................................................	21	1	21.00	21	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	20.00	20	0	0	0	0	1	19	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCG................................................................................	22	1	19.00	19	15	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	17.00	17	16	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	15.00	15	12	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAA...............................................................................	23	1	14.00	14	11	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAT...............................................................................	23	1	13.00	13	10	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGT........................................................................................................................	25	1	12.00	12	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTG..............................................................................................................................	18	1	12.00	12	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	11.00	11	10	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	11.00	11	8	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	9.00	9	1	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTT....................................................................................	18	1	8.00	8	1	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	8.00	8	4	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	8.00	8	1	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	8.00	8	6	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	7.00	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	7.00	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCC................................................................................	22	1	6.00	6	5	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAA.........................................................................................................................	24	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	4.00	4	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	4.00	4	1	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTT..............................................................................................................................	19	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TCCGTAGTGCATTGCAGT..........................................................................................................................	18	1	3.00	3	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAAC..............................................................................	24	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGG.................................................................................	21	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCTT...........................................................................................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCATT..............................................................................	24	1	3.00	3	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................GCAAGCGCTGCGGATTTGGCA................................................................................	21	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTACT.......................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TTCAATTCCGTAGTGCATTGCAG...........................................................................................................................	23	1	2.00	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGTG.......................................................................................................................	26	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCTT...............................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCTC...........................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAAA.......................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGG.............................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTA..............................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGAC................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGTC............................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGC..........................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAAC........................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGTTT...............................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAAA........................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGGAC........................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAAC..........................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCTG...............................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CAAGCGCTGCGGATTTGGCA................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AGCGCTGCGGATTTGGCA................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATC...............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CCGTAGTGCATTGCAGT..........................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TTCAATTCCGTAGTGCATTGCA............................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCTTT..............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCG............................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAAC.......................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AAGCGCTGCGGATTTGGCA................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTCAG............................................................................................................................	21	3	1.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGC.............................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCA............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGTGT........................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTCCGTAGTGCATTGCAG...........................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TTCAATTCCGTAGTGCAT................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAAT..............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAT.........................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT-TA---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTCATCAT--CTGCTAG---AGAAATGTG--AAATTTGTAGTA----------ACCA--------TA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	8388.00	8388	233	396	1464	6295
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	3072.00	3072	174	118	114	2666
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	2265.00	2265	19	14	11	2221
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	1431.00	1431	18	18	2	1393
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCA................................................................................	22	1	1046.00	1046	28	46	213	759
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGC.................................................................................	21	1	391.00	391	1	7	28	355
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	259.00	259	3	0	0	256
....................................................................................................................................................TGCAAGCGCTGCGGATTTGG..................................................................................	20	1	243.00	243	8	6	5	224
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	104.00	104	1	5	2	96
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	95.00	95	0	3	2	90
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	72.00	72	3	4	9	56
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	61.00	61	0	2	2	57
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAT...............................................................................	23	1	44.00	44	1	0	0	43
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	30.00	30	0	0	0	30
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	26.00	26	0	0	0	26
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	24.00	24	0	1	2	21
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	19.00	19	1	0	0	18
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	19.00	19	10	1	3	5
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	15.00	15	0	0	0	15
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	14.00	14	0	0	1	13
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	11.00	11	8	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	10.00	10	0	0	2	8
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAA...............................................................................	23	1	8.00	8	0	0	1	7
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	7.00	7	0	0	2	5
....................................................................................................................................................TGCAAGCGCTGCGGATTTG...................................................................................	19	1	7.00	7	0	0	0	7
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	6.00	6	0	0	0	6
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGA.................................................................................	21	1	6.00	6	0	0	0	6
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	6.00	6	0	0	0	6
...................................................................................................................................................CTGCAAGCGCTGCGGATTTGGC.................................................................................	22	1	6.00	6	0	1	1	4
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGT.................................................................................	21	1	5.00	5	1	0	0	4
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	5.00	5	0	1	0	4
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	4.00	4	2	0	0	2
........................................................................................................................................................AGCGCTGCGGATTTGGCA................................................................................	18	1	4.00	4	0	0	1	3
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	3.00	3	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGCATA..........................................................................................................................	23	1	3.00	3	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAA........................................................................................................................	25	1	3.00	3	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	3.00	3	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGT.............................................................................................................................	20	1	3.00	3	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	3.00	3	0	0	0	3
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCT................................................................................	22	1	3.00	3	0	0	0	3
.........................................................................................................TCAATTCCGTAGTGCATTGTT............................................................................................................................	21	1	3.00	3	0	0	0	3
.....................................................................................................................................................GCAAGCGCTGCGGATTTGGCA................................................................................	21	1	3.00	3	0	0	0	3
..............................................................................................................TCCGTAGTGCATTGCAGT..........................................................................................................................	18	1	2.00	2	2	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAC...............................................................................	23	1	2.00	2	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATTT..............................................................................................................................	19	1	2.00	2	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAA.........................................................................................................................	24	1	2.00	2	0	1	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	2.00	2	0	0	0	2
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGA........................................................................................................................	25	1	1.00	1	0	0	0	1
......................................................................................................................................................CAAGCGCTGCGGATTTGGCAA...............................................................................	21	1	1.00	1	0	0	0	1
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	1.00	1	0	0	0	1
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCG................................................................................	22	1	1.00	1	0	1	0	0
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	1.00	1	1	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGTTT...............................................................................	23	1	1.00	1	0	0	0	1
.........................................................................................................TCAATTCCGTAGTGCATTGCAGCT.........................................................................................................................	24	1	1.00	1	0	0	0	1
...................................................................................................................................................CTGCAAGCGCTGCGGATTTGGCA................................................................................	23	1	1.00	1	0	0	0	1
....................................................................................................................................................TGCAAGCGCTGCGGATTTGCA.................................................................................	21	1	1.00	1	0	0	0	1
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGTGT...............................................................................	23	1	1.00	1	0	0	0	1

droYak3

-CCCATACT-------------------------------------------TTACAGTTCGGAACTAAATATTTCAAAAATA-----TATTGGCTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT-TA---ATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTCCATCAT--CTGCTAG---AGAAATGTG--AAATTGGTAGTA----------ACCA--------TA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	12624.00	12624	496	370	628	155	3833	6837	305	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	6424.00	6424	316	160	16	5	2295	3594	38	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	2030.00	2030	266	11	2	0	663	1075	13	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	1363.00	1363	1109	3	0	0	96	152	3	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	1178.00	1178	54	40	0	1	392	687	4	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCA................................................................................	22	1	776.00	776	390	17	54	10	123	176	5	0	0	1	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	276.00	276	61	0	184	0	5	26	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGC.................................................................................	21	1	245.00	245	109	3	18	6	41	67	0	0	1	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	111.00	111	5	2	2	0	35	65	2	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	104.00	104	5	1	5	1	32	58	2	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	89.00	89	0	2	1	0	44	41	1	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	65.00	65	54	0	1	0	4	6	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	53.00	53	0	1	0	0	19	33	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	50.00	50	1	1	0	0	19	29	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	49.00	49	0	0	0	0	11	38	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGG..................................................................................	20	1	49.00	49	0	2	0	1	19	26	1	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	42.00	42	1	34	2	0	2	3	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	41.00	41	0	1	1	0	19	20	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCT................................................................................	22	1	32.00	32	26	0	0	0	3	3	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	23.00	23	2	0	0	0	5	16	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	22.00	22	12	0	0	0	0	10	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	18.00	18	1	12	0	0	2	3	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCG................................................................................	22	1	16.00	16	14	0	0	0	1	1	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	16.00	16	1	0	0	0	9	6	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	13.00	13	2	1	0	0	6	4	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	12.00	12	1	0	0	0	2	9	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	10.00	10	0	1	0	0	2	7	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAT...............................................................................	23	1	9.00	9	1	0	0	0	6	2	0	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	9.00	9	0	0	0	0	4	5	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	8.00	8	5	0	0	0	1	2	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	8.00	8	0	0	0	0	4	4	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCC................................................................................	22	1	8.00	8	4	0	0	0	1	3	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGT.............................................................................................................................	20	1	8.00	8	1	0	0	0	3	4	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	7.00	7	0	0	0	0	5	2	0	0	0	0	0
..............................................................................................................TCCGTAGTGCATTGCAGT..........................................................................................................................	18	1	7.00	7	2	2	1	0	0	2	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAA...............................................................................	23	1	6.00	6	4	0	0	0	0	2	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTT..............................................................................................................................	19	1	5.00	5	0	0	0	0	3	2	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	4.00	4	2	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAG...............................................................................	23	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	4.00	4	1	1	0	0	0	1	1	0	0	0	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTT.........................................................................................................................	22	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	3.00	3	1	1	0	0	0	1	0	0	0	0	0
.................................................................................TA-----TATTGGCTTTGAAGTTT.................................................................................................................................................	19	1	3.00	3	0	0	1	0	1	1	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCTT...........................................................................................................................	22	1	3.00	3	1	0	0	0	0	2	0	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAA.........................................................................................................................	24	1	3.00	3	1	0	0	0	0	2	0	0	0	0	0

droEre2

-G--------------------------------------------------------------------------------------TATTGGTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTCTT-TA---CTTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGAC-GACCTTAATCAT--CTGGAGCTAGAGACGTGTG--ATAT-------------------TTG--------TA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................TCAATTCCGTAGTGCATTGCAGT..........................................................................................................................	23	1	15420.00	15420	535	367	3472	166	812	10040	28
.........................................................................................................TCAATTCCGTAGTGCATTGCAG...........................................................................................................................	22	1	7485.00	7485	351	12	1766	15	163	5178	0
.........................................................................................................TCAATTCCGTAGTGCATTGCA............................................................................................................................	21	1	5796.00	5796	42	0	212	4	35	5503	0
.........................................................................................................TCAATTCCGTAGTGCATTGC.............................................................................................................................	20	1	2320.00	2320	13	4	279	1	30	1993	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCA................................................................................	22	1	1665.00	1665	16	7	244	13	53	1332	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGC.................................................................................	21	1	424.00	424	2	2	59	3	8	350	0
.........................................................................................................TCAATTCCGTAGTGCATTG..............................................................................................................................	19	1	297.00	297	3	0	19	0	5	270	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGA..........................................................................................................................	23	1	236.00	236	6	1	30	0	2	197	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGC..........................................................................................................................	23	1	229.00	229	2	93	6	0	0	128	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGG..................................................................................	20	1	217.00	217	7	0	33	0	8	169	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTA.........................................................................................................................	24	1	152.00	152	3	1	13	0	3	132	0
...........................................................................................................AATTCCGTAGTGCATTGCAGT..........................................................................................................................	21	1	136.00	136	0	2	32	1	2	99	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTT.........................................................................................................................	24	1	105.00	105	3	3	16	0	4	79	0
..........................................................................................................CAATTCCGTAGTGCATTGCAGT..........................................................................................................................	22	1	77.00	77	44	3	2	0	2	26	0
...........................................................................................................AATTCCGTAGTGCATTGCAG...........................................................................................................................	20	1	67.00	67	0	0	14	0	2	51	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGG..........................................................................................................................	23	1	55.00	55	2	1	0	0	0	52	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAA...........................................................................................................................	22	1	52.00	52	2	0	9	0	0	41	0
...........................................................................................................AATTCCGTAGTGCATTGCA............................................................................................................................	19	1	52.00	52	0	0	1	0	0	51	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTG.........................................................................................................................	24	1	51.00	51	1	0	9	1	1	39	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAT...........................................................................................................................	22	1	47.00	47	1	0	12	0	1	33	0
..........................................................................................................CAATTCCGTAGTGCATTGCAG...........................................................................................................................	21	1	29.00	29	16	0	2	0	0	11	0
.........................................................................................................TCAATTCCGTAGTGCATTGA.............................................................................................................................	20	1	17.00	17	0	0	1	0	0	16	0
..........................................................................................................CAATTCCGTAGTGCATTGCA............................................................................................................................	20	1	17.00	17	5	0	0	0	0	12	0
...........................................................................................................AATTCCGTAGTGCATTGC.............................................................................................................................	18	1	15.00	15	0	0	2	0	0	13	0
.........................................................................................................TCAATTCCGTAGTGCATT...............................................................................................................................	18	1	13.00	13	1	0	0	0	0	12	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAC...........................................................................................................................	22	1	13.00	13	0	0	7	0	0	6	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAT...............................................................................	23	1	13.00	13	0	0	0	0	0	13	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAA........................................................................................................................	25	1	11.00	11	1	0	1	0	0	9	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCAA...............................................................................	23	1	11.00	11	0	0	2	0	1	8	0
.........................................................................................................TCAATTCCGTAGTGCATTGCT............................................................................................................................	21	1	9.00	9	0	0	3	0	0	6	0
..........................................................................................................CAATTCCGTAGTGCATTGC.............................................................................................................................	19	1	9.00	9	3	0	1	0	1	4	0
...................................................................................................................................................CTGCAAGCGCTGCGGATTTGGC.................................................................................	22	1	9.00	9	0	1	0	0	2	6	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTC.........................................................................................................................	24	1	9.00	9	0	0	0	0	0	9	0
.........................................................................................................TCAATTCCGTAGTGCATTGCC............................................................................................................................	21	1	8.00	8	0	0	2	0	0	6	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAAA..........................................................................................................................	23	1	7.00	7	1	0	0	0	0	6	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGT.................................................................................	21	1	7.00	7	0	0	0	0	0	7	0
.............................................................................................................TTCCGTAGTGCATTGCAGT..........................................................................................................................	19	1	7.00	7	1	1	1	0	0	4	0
............................................................................................................ATTCCGTAGTGCATTGCAG...........................................................................................................................	19	1	7.00	7	0	0	2	0	0	5	0
........................................................................................................................................................AGCGCTGCGGATTTGGCA................................................................................	18	1	6.00	6	0	0	0	0	0	6	0
.....................................................................................................................................................GCAAGCGCTGCGGATTTGGCA................................................................................	21	1	6.00	6	3	1	0	0	0	2	0
............................................................................................................ATTCCGTAGTGCATTGCAGT..........................................................................................................................	20	1	5.00	5	0	1	0	0	1	3	0
.......................................................................................................................................................AAGCGCTGCGGATTTGGCA................................................................................	19	1	5.00	5	0	0	0	0	0	5	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGA.................................................................................	21	1	5.00	5	0	0	1	0	0	4	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTG...................................................................................	19	1	5.00	5	0	0	3	0	0	2	0
.........................................................................................................TCAATTCCGTAGTGCATTGCG............................................................................................................................	21	1	5.00	5	0	0	0	0	0	5	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCT................................................................................	22	1	4.00	4	0	0	1	0	0	3	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAA.........................................................................................................................	24	1	4.00	4	0	0	1	0	0	3	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTA.........................................................................................................................	22	1	4.00	4	0	0	0	0	0	4	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGCA.........................................................................................................................	24	1	4.00	4	0	0	0	0	0	4	0
.........................................................................................................TCAATTCCGTAGTGCATTCA.............................................................................................................................	20	1	4.00	4	0	0	0	0	0	4	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCC................................................................................	22	1	3.00	3	0	0	3	0	0	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTAC........................................................................................................................	25	1	3.00	3	0	1	0	0	0	2	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGA........................................................................................................................	25	1	3.00	3	0	0	1	0	0	2	0
....................................................................................................................................................TGCAAGCGCTGCGGATTTGGCG................................................................................	22	1	3.00	3	0	0	0	0	0	3	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGAAA........................................................................................................................	25	1	2.00	2	0	0	1	0	1	0	0
.........................................................................................................TCAATTCCGTAGTGCATTGCAGTGT........................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0
.........................................................................................................TCAATTCCGTAGTGCATTGTC............................................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
...........................................................................................................AATTCCGTAGTGCATTGCAGTG.........................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0

dgr_33

scaffold_15126:4596371-4596432 +

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-29.0	-29.0	-29.0