dgr_329

CDS [Dgri\kst-cds]; exon [dgri_GLEANR_14710:13]; exon [dgri_GLEANR_14710:14]; CDS [Dgri\kst-cds]; intron [Dgri\kst-in]

Name	Class	Family	Strand
Gypsy-22_DWil-I-int	LTR	Gypsy	+

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAAAGATGACAGCGCTGTTCTCATGCGCAGCAGCGAGTCCAGGCAGTCCGGTAAGTGGCCCAATCGTGTGGCAGTCCCCACTCATTGTGTAGTCAGCTATATATTTGTGTTTGTACCACACACACACACACACACACATATACACACATACATACATATACACATACTTACTTTGATCACCCATTTGTAAAAACGTGTACCCCTCCAAAAATCGACTTGTATATTAGATAATCCGCCGCCATTGCCCACAACGATGCCGCCCTTGGGCAGCGCCAGT ************************************************((..(((........((((((.......(((....(((((((....)))))))...)))......)))))).......)))..))..(((((((..............(((((....((((..((......))...))))....)))))....((........))..)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
............................................................................................................................................................................................................................................................GATCCCGCCCTTGGGCACCA.....	20	3	6	0.17	1	1
.............................................................................................................................................................................................................................................................ATCCCGCCCTTGGGCACCA.....	19	3	17	0.06	1	1

GTTTCTACTGTCGCGACAAGAGTACGCGTCGTCGCTCAGGTCCGTCAGGCCATTCACCGGGTTAGCACACCGTCAGGGGTGAGTAACACATCAGTCGATATATAAACACAAACATGGTGTGTGTGTGTGTGTGTGTGTATATGTGTGTATGTATGTATATGTGTATGAATGAAACTAGTGGGTAAACATTTTTGCACATGGGGAGGTTTTTAGCTGAACATATAATCTATTAGGCGGCGGTAACGGGTGTTGCTACGGCGGGAACCCGTCGCGGTCA ************************************************((..(((........((((((.......(((....(((((((....)))))))...)))......)))))).......)))..))..(((((((..............(((((....((((..((......))...))))....)))))....((........))..)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
...........................................................................................................................................................................................................................ATGTAATGTATTAGGCGG........................................	18	2	9	0.11	1	1	0
.........................................................................................................................TGTGTGTGTGTGTGTGTATAT.......................................................................................................................................	21	0	20	0.05	1	1	0
...............................................................................................................................................GGTGTATGTAGGTATATGTGT.................................................................................................................	21	2	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15110:13732588-13732864 -	dgr_329	C---AAAGATGACAGCGC-TGTTCTCATGCGCAGCAGCGAGTCCAGGCAGTCCGGTAAGTGGCCCAA-TC----GTGTG----GC-------------AGTCCCCACTCA-T----TGTGTA--------G-------TCA---GCTATAT---ATTTGTG--TT--T--GT-----------ACCACACACACACACA-------------------------------------------------------------CACA--CA-------CATAT------A------------------------------CAC------ACATACATACATATACACATACTTACTTTGATCACCCATTTGTAAA-------------------AACGTGTACCCCTCCAAAAAT--------------CGAC--T--T--------GTATATTAGATAA-TCCGCCGCCATTGCCC-ACAACGATGCCGCCCTTGGGCAGC---GCCAGT
droVir3	scaffold_13049:5252058-5252336 +	dvi_18438	C---AAAGATGACAGCGC-CGTGATGATGCGCAACAGCGAGTCCAGACAGTCGGGTGAGTAGCTTC--------GGGTT----GG-------------CGT-CCCA-----G----T--GTAGC---TAAC-------GCC---TTCAGCT---ATTTGTG--TC--TGTTC------------CCACACACACACACA-------------------------------------------------------------CACA--CA-------CATAT------A------------------------------TACACAAAAACTCACACACACATAC------CT--TTTG-TCATCCA-TTGTAAAACGAAAAAA-----AAAAAAACGTGTCCCCTGCCCAA-ATT-------------CGACTCG--T--------AAATATTAGATAA-TCCGCCGCCATTGCCC-ACAACAATGCCGCCCCTGGGCAGC---------
droMoj3	scaffold_6680:3618289-3618558 +		C---AGAGATGACAGTGG-CGTTCTAATGCGTAACAGTGAATCCAGACAGTCGGGTAAGTAGTCCAA-------GGGTT----AT-------------TCA-CCCA-----C----T--GTAGTTAACCTTGTAGTTAACTGCATTTCGCT---A-TTGTG--TT--T--GT-----------ACCACACACACACACA------CACA-------------------------------------------------CACACA--CA-------CAACC------------------------------------------------ACAACCACATATAC------CT------------CA-TTGTAAA------------------CAACGTGTCCCTTTCCAAAAACT----------C---GCC--G--CGTATACATATAAATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCGCCATTGGGCAGC---------
droWil2	scf2_1100000004768:1038098-1038439 -	dwi_2100	C---AAGGATGACAGCAT-CGTACTGAAACGCAATAGCGAAGCCCGACAATCGGGTAAGTAGAGTAGTGT----AGGGG----GA--------------------------T----T--ATAAC---A--A-------TCG---GCTAGCC---ATTTGTC--TA--T--GT-----------CCCAGTCAAACACCAA------C-CAACCAATCAACCAACCACCAACCCATCCAACCACCCCAATCCACAACTCTCCTTCATACA-------TTTCT------TCACTTACCTACATACATATCTCTCTATATATATAT----AAAT------------A-------------------TA-TTGTAAAACAAAAAAACCAAACGA--AAATTGTGT---CCCCTCACCGTTCCGTTACTTGAACTC--G--C--------AACGATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCGCCTTTAGG---C---------
dp5	XR_group8:5416951-5417176 -		C---AAGGACGACAGCAC-TGGGCTGCAGCGCAACAGCGAGGCCAGACAATCGGGTGAGTGTCCTC--------CGGCCGTCG----AACCA------------------------TATGAA-TCGA-GTAGAGATTCTGT---GCGATCC---ATTTGTC--TG--TTTGT-----------TCCACAA--CTC----CACAACAACA-------------------------------------------------CC-ACA--CA-------TTATTCCT---C--------------------------------C------ACTC------------A-------------------CA-ATTCC---------------------AA----------------------------------------------------------AGATAA-TCCGCCGCCATTGCCA-ACCACGATGCCACCCGTTGGGGGCCATGGCCAT
droPer2	scaffold_5915:589-822 +		C---AAGGACGACAGCACTGGAGCTGCAGCGCAACAGCGAGGCCAGACAATCGGGTGAGTGTCCTC--------CGGCCGTCG----AACCA------------------------TATGAAGTCGA-GTAGAGATTCTGT---GCGATCC---ATTTGTCTGTA---TTGT----------TTCCACAA--CTC---CCACAACAACA-------------------------------------------------CC-ACA--CA-------TTATTCCCT--C--------------------------------C------ACTC------------A-------------------CA-ATTCC---------------------AA----------------------------------------------------------AGATAATTCCGCCGCCATTGCCAAACCACGATGCCACCCGTTGGGGGCCATGGCCAT
droAna3	scaffold_13337:10079709-10079955 -	dan_2541	C---CGGGATGACAGTGC-AGTGCTGAAGCGCAACAGCGAGGCCAGACAATCGGGTGAGT--------------AGATG----GC-------------CTT-CTAA------TTTT-ATG----------A-------TCC---CCCAGCCCCCATCTC--------TGTGTTAAACATAATTTCCACAA--AA-----CAAAACAAAA-------------------------------------------------AA-ACA--TA-------CAATTCCCACAT------------------------------CAT------ATTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TTCGAT---------------GATGCC--G--C--------GTATATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCAGTGGGTGGCCA---CCA-
droBip1	scf7180000396569:1274831-1275057 +		C---AAGGATGACGGTGC-AGTGCTGAAGCGCAACAGCGAGGCCAGACAATCGGGTGAGTAA--------------AAG----TCCC--CCCATGACGACC-CCCA--------------------------------TCC---CCT-GCC---ATTTGTC--TC--TGTGT-----------ACCACATACCCCA-CC------GA------------------------------------------------------CC------------CGATTCCCACAT------------------------------CAT------ATTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TTCGAT---------------GATGCC--G--C--------GCGTGTTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------
droKik1	scf7180000302391:489057-489305 +		CTTTAAGGATGACAGTGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTGAGTTTTCCCAAGG----GAGTA----GT-------------AAG--------------------------TAAG--------------GCAGCC---ATTTGTG--TCTCTCTGT-----------CCCATACACCACCACC------GCCACCTGCTC----------------------------------------CTCCTCCA--CA-------TTACTCCT---C------------------------------CTC------ACTC------------A-------------------CA-TTGTACA-------------------AAATTGTCC---TCTTACAACG------------ATGCC--GCTG--------GGCTATTAGATAA-TCCGCCGCCTTTACCC-ACGACAATGCCACCAGTGGGTGGC---------
droFic1	scf7180000454105:1695957-1696185 +		C---AGGGACGACAGCAC-AGTGCTGACGCGCAACAGCGAGGCCAGACAATCGGGTAAGTGCTCCAACCA----GGG----------AACCAATGGGGATC-CCCA--------------------------------GTC----CCAGCC---ACCAGTG--TC--TCTGT------------CCACACACCCCGACC-------------------------------------------------------------TCCA--CA-------TTACT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TCCAACAACG----------CGATGTC--G--T--------GTGGTGTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCAGTGGGT------------
droEle1	scf7180000491249:1872427-1872683 -		C---AAGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTGAGTACTCCTAAAT----GGGTG----GG-------------ATG-ACCATGCCC-ATTT-GTG-------------------TC---CCAAGCC---ATTTGTG--TC--TCTGT------------CCATACACCTCGACC--------CAGTCAATC----------------------------------------CAACTCCA--CATTCAAC--CAAT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TCCAAAAACG----------CAATGCC--G--TGT------GTGTATTAGAAAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCAGTGGGTGGC---------
droRho1	scf7180000777856:24955-25188 +		C---AAGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTAAGTCTTCCTAAAT----GGGTG----GT-------------AAT-CCCA------------------------G-------TCC---CCCAGCC---ATCTGTG--TC--TCTGT------------CCATACACCTCAACC-------------------------------------------------------------TCCC--CAACCAACATCAAC------C--------------------------------C------ACTT------------A-------------------CA-TTGTAA--------------------AAATTGTCC---TTCAACAACG----------CAATGCC--G--T--------GTGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------
droBia1	scf7180000302428:2733879-2734107 +		C---AAGGATGACAACGC-GGTGCTGGCACGCAACAGCGAGGCCAGACAATCGGGTGAGTCCTTAGAACT----GGGTA----GT-------------TGC-CATA--------------------------------TCC---CCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACCA---CC-------------------------------------------------------------TACA--TA-------TTATT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TCCAACAACGTGCCAA----CAATGCC--G--T--------GTGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------
droTak1	scf7180000415855:128465-128696 -		C---CGGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGGCAATCAGGTGAGTTCCTAGAGTCCTTGGGGTA----GT-------------AT---------------------ATT---CATA-------TTC---CCTAGCC---ATTTGTG--TC--TTTGT------------CCATAAAACACA-------TAAACA-------------------------------------------------CCTACA--CA-------TAATT------C--------------------------------C------ACTC------------A-------------------CA-TTGTACA-------------------AAATTGTCC---TTCAAAAACG------------ATG----------------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------
droEug1	scf7180000409466:1094554-1094776 +		C---AAGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTAAGTCCTCAAAACT----AGGTA----GT-------------AGT-CCCT--------------------------------TCC---CCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACAC---CC-------------------------------------------------------------TTCA--CA-------TTATT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAA--------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------GTGTAATAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCAGTGGGTGGC---------
dm3	chr3L:3366261-3366487 +		C---AAGGATGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACT----AGGTG----GT-------------ATT-CCCA--------------------------------TTT---CCGAGCT---ATTTGTG--TC--TTTGT------------CCATACACCTGCTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------
droSim2	3l:3262922-3263148 +	dsi_4010	C---AAGGACGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACT----AGGTG----GT-------------ATT-CCCA--------------------------------TTT---CCTAGCC---ATTTGTG--TC--TTTGT------------CCATACACCTACTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCAGTGGGTGGC---------
droSec2	scaffold_2:3357606-3357832 +		T---AAGGACGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACT----AGGTG----GT-------------ATT-CCCA--------------------------------TTT---CCTAGCT---ATTTGTG--TC--TTTGT------------CCATACACCTACTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------
droYak3	3L:3913325-3913551 +		C---AAGGATGATAACGC-GTTGTTGGCGCGCAACAGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACT----GGGTG----AA-------------ATT-CCCA--------------------------------TTT---GCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACCCTCTCC-------------------------------------------------------------TTCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------
droEre2	scaffold_4784:6056185-6056411 +		C---AAGGATGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACT----GGGTG----GT-------------ATT-CCCA--------------------------------TTT---GCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACCCTCTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

C---AAAGATGACAGCGC-TGTTCTCATGCGCAGCAGCGAGTCCAGGCAGTCCGGTAAGTGGCCCAA-TC----GTGTG----GC-------------AGTCCCCACTCA-T----TGTGTA--------G-------TCA---GCTATAT---ATTTGTG--TT--T--GT-----------ACCACACACACACACA-------------------------------------------------------------CACA--CA-------CATAT------A------------------------------CAC------ACATACATACATATACACATACTTACTTTGATCACCCATTTGTAAA-------------------AACGTGTACCCCTCCAAAAAT--------------CGAC--T--T--------GTATATTAGATAA-TCCGCCGCCATTGCCC-ACAACGATGCCGCCCTTGGGCAGC---GCCAGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droVir3

C---AAAGATGACAGCGC-CGTGATGATGCGCAACAGCGAGTCCAGACAGTCGGGTGAGTAGCTTC--------GGGTT----GG-------------CGT-CCCA-----G----T--GTAGC---TAAC-------GCC---TTCAGCT---ATTTGTG--TC--TGTTC------------CCACACACACACACA-------------------------------------------------------------CACA--CA-------CATAT------A------------------------------TACACAAAAACTCACACACACATAC------CT--TTTG-TCATCCA-TTGTAAAACGAAAAAA-----AAAAAAACGTGTCCCCTGCCCAA-ATT-------------CGACTCG--T--------AAATATTAGATAA-TCCGCCGCCATTGCCC-ACAACAATGCCGCCCCTGGGCAGC---------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........ATGACAGCGC-CGTGATGATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............AGCGC-CGTGATGATGCGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........ACAGCGC-CGTGATGATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGACAGCGC-CGTGATGATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAACAGCGAGTCCAGACAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........GACAGCGC-CGTGATGATGCGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GACAGCGC-CGTGATGATGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............CAGCGC-CGTGATGATGCGCAACAGCGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CCA-----G----T--GTAGC---TAAC-------GCC---TTCAGCT---ATT...............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GACAGCGC-CGTGATGATGCGCAACAGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................GCAACAGCGAGTCCAGACAGTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............AGCGC-CGTGATGATGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GC-CGTGATGATGCGCAACAGCGAGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGACAGCGC-CGTGATGATGCGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GTGAGTAGCTTC--------GGGTT----GG-------------CGT-CCC...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................A-ATT-------------CGACTCG--T--------AAATATTAG.......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................CAACAGCGAGTCCAGACAGTCGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................GATGATGCGCAACAGCGAGTCCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
C---AAAGATGACAGCGC-CGTGATGATGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................GCAACAGCGAGTCCAGACAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAACAGCGAGTCCAGACAGTCGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................ATGATGCGCAACAGCGAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AAAGATGACAGCGC-CGTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GC-CGTGATGATGCGCAACAGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCAACAGCGAGTCCAGACAGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
C---AAAGATGACAGCGC-CGTGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CACACACACA-------------------------------------------------------------CACA--CA-------CATA.....................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CACACA-------------------------------------------------------------CACA--CA-------CATAT------A------------------------------...............................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C---AGAGATGACAGTGG-CGTTCTAATGCGTAACAGTGAATCCAGACAGTCGGGTAAGTAGTCCAA-------GGGTT----AT-------------TCA-CCCA-----C----T--GTAGTTAACCTTGTAGTTAACTGCATTTCGCT---A-TTGTG--TT--T--GT-----------ACCACACACACACACA------CACA-------------------------------------------------CACACA--CA-------CAACC------------------------------------------------ACAACCACATATAC------CT------------CA-TTGTAAA------------------CAACGTGTCCCTTTCCAAAAACT----------C---GCC--G--CGTATACATATAAATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCGCCATTGGGCAGC---------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................AACAGTGAATCCAGACAGTCGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	1	0	0	0	0	2
..........GACAGTGG-CGTTCTAATGCGTAACAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
........ATGACAGTGG-CGTTCTAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATAC------CT------------CA-TTGTAAA------------------CAACGT................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................GTTCTAATGCGTAACAGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......GATGACAGTGG-CGTTCTAATGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................AGTGAATCCAGACAGTCGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................GG-CGTTCTAATGCGTAACAGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
......AGATGACAGTGG-CGTTCTAATGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................CTAATGCGTAACAGTGAATCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................T-----------ACCACACACACACACA------CACA-------------------------------------------------C.........................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droWil2

C---AAGGATGACAGCAT-CGTACTGAAACGCAATAGCGAAGCCCGACAATCGGGTAAGTAGAGTAGTGT----AGGGG----GA--------------------------T----T--ATAAC---A--A-------TCG---GCTAGCC---ATTTGTC--TA--T--GT-----------CCCAGTCAAACACCAA------C-CAACCAATCAACCAACCACCAACCCATCCAACCACCCCAATCCACAACTCTCCTTCATACA-------TTTCT------TCACTTACCTACATACATATCTCTCTATATATATAT----AAAT------------A-------------------TA-TTGTAAAACAAAAAAACCAAACGA--AAATTGTGT---CCCCTCACCGTTCCGTTACTTGAACTC--G--C--------AACGATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCGCCTTTAGG---C---------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................GTACTGAAACGCAATAGCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	15.00	15	0	0	6	9	0
...................CGTACTGAAACGCAATAGCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0
....................GTACTGAAACGCAATAGCGAAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0
...............................CAATAGCGAAGCCCGACAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................GTACTGAAACGCAATAGCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........GACAGCAT-CGTACTGAAACGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........................AAACGCAATAGCGAAGCCCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.................................ATAGCGAAGCCCGACAATCGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.........TGACAGCAT-CGTACTGAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.............AGCAT-CGTACTGAAACGCAATAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................AACCACCCCAATCCACAACTCTCCTTC.....................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
................................AATAGCGAAGCCCGACAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................GTACTGAAACGCAATAGCGAAGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..................................TAGCGAAGCCCGACAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........ATGACAGCAT-CGTACTGAAACGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
..........GACAGCAT-CGTACTGAAACGCAATAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0

dp5

C---AAGGACGACAGCAC-TGGGCTGCAGCGCAACAGCGAGGCCAGACAATCGGGTGAGTGTCCTC--------CGGCCGTCG----AACCA------------------------TATGAA-TCGA-GTAGAGATTCTGT---GCGATCC---ATTTGTC--TG--TTTGT-----------TCCACAA--CTC----CACAACAACA-------------------------------------------------CC-ACA--CA-------TTATTCCT---C--------------------------------C------ACTC------------A-------------------CA-ATTCC---------------------AA----------------------------------------------------------AGATAA-TCCGCCGCCATTGCCA-ACCACGATGCCACCCGTTGGGGGCCATGGCCAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......GACGACAGCAC-TGGGCTGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....AAGGACGACAGCAC-TGGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........CGACAGCAC-TGGGCTGCAGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CAC-TGGGCTGCAGCGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

C---AAGGACGACAGCACTGGAGCTGCAGCGCAACAGCGAGGCCAGACAATCGGGTGAGTGTCCTC--------CGGCCGTCG----AACCA------------------------TATGAAGTCGA-GTAGAGATTCTGT---GCGATCC---ATTTGTCTGTA---TTGT----------TTCCACAA--CTC---CCACAACAACA-------------------------------------------------CC-ACA--CA-------TTATTCCCT--C--------------------------------C------ACTC------------A-------------------CA-ATTCC---------------------AA----------------------------------------------------------AGATAATTCCGCCGCCATTGCCAAACCACGATGCCACCCGTTGGGGGCCATGGCCAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................CGA-GTAGAGATTCTGT---GC..........................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
............................................................................................................................CGA-GTAGAGATTCTGT---GG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......................CTGCAGCGCAACAGCGAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....AAGGACGACAGCACTGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.50	2	2	0	0	0	0	0

droAna3

C---CGGGATGACAGTGC-AGTGCTGAAGCGCAACAGCGAGGCCAGACAATCGGGTGAGT--------------AGATG----GC-------------CTT-CTAA------TTTT-ATG----------A-------TCC---CCCAGCCCCCATCTC--------TGTGTTAAACATAATTTCCACAA--AA-----CAAAACAAAA-------------------------------------------------AA-ACA--TA-------CAATTCCCACAT------------------------------CAT------ATTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TTCGAT---------------GATGCC--G--C--------GTATATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCAGTGGGTGGCCA---CCA-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................GCGCAACAGCGAGGCCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0
...........................AGCGCAACAGCGAGGCCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................GC-AGTGCTGAAGCGCAACAGCGAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....GGGATGACAGTGC-AGTGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............TGC-AGTGCTGAAGCGCAACAGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
................................AACAGCGAGGCCAGACAATCGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................AGTGCTGAAGCGCAACAGCGAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........GACAGTGC-AGTGCTGAAGCGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.........................GAAGCGCAACAGCGAGGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................GAAGCGCAACAGCGAGGCCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.......GATGACAGTGC-AGTGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
................................AACAGCGAGGCCAGACAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................AACAGCGAGGCCAGACAATCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................GTGCTGAAGCGCAACAGCGAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................TGAAGCGCAACAGCGAGGCCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......GATGACAGTGC-AGTGCTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...........ACAGTGC-AGTGCTGAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droBip1

C---AAGGATGACGGTGC-AGTGCTGAAGCGCAACAGCGAGGCCAGACAATCGGGTGAGTAA--------------AAG----TCCC--CCCATGACGACC-CCCA--------------------------------TCC---CCT-GCC---ATTTGTC--TC--TGTGT-----------ACCACATACCCCA-CC------GA------------------------------------------------------CC------------CGATTCCCACAT------------------------------CAT------ATTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TTCGAT---------------GATGCC--G--C--------GCGTGTTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTTTAAGGATGACAGTGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTGAGTTTTCCCAAGG----GAGTA----GT-------------AAG--------------------------TAAG--------------GCAGCC---ATTTGTG--TCTCTCTGT-----------CCCATACACCACCACC------GCCACCTGCTC----------------------------------------CTCCTCCA--CA-------TTACTCCT---C------------------------------CTC------ACTC------------A-------------------CA-TTGTACA-------------------AAATTGTCC---TCTTACAACG------------ATGCC--GCTG--------GGCTATTAGATAA-TCCGCCGCCTTTACCC-ACGACAATGCCACCAGTGGGTGGC---------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

C---AGGGACGACAGCAC-AGTGCTGACGCGCAACAGCGAGGCCAGACAATCGGGTAAGTGCTCCAACCA----GGG----------AACCAATGGGGATC-CCCA--------------------------------GTC----CCAGCC---ACCAGTG--TC--TCTGT------------CCACACACCCCGACC-------------------------------------------------------------TCCA--CA-------TTACT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TCCAACAACG----------CGATGTC--G--T--------GTGGTGTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCAGTGGGT------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

C---AAGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTGAGTACTCCTAAAT----GGGTG----GG-------------ATG-ACCATGCCC-ATTT-GTG-------------------TC---CCAAGCC---ATTTGTG--TC--TCTGT------------CCATACACCTCGACC--------CAGTCAATC----------------------------------------CAACTCCA--CATTCAAC--CAAT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TCCAAAAACG----------CAATGCC--G--TGT------GTGTATTAGAAAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCAGTGGGTGGC---------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C---AAGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTAAGTCTTCCTAAAT----GGGTG----GT-------------AAT-CCCA------------------------G-------TCC---CCCAGCC---ATCTGTG--TC--TCTGT------------CCATACACCTCAACC-------------------------------------------------------------TCCC--CAACCAACATCAAC------C--------------------------------C------ACTT------------A-------------------CA-TTGTAA--------------------AAATTGTCC---TTCAACAACG----------CAATGCC--G--T--------GTGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C---AAGGATGACAACGC-GGTGCTGGCACGCAACAGCGAGGCCAGACAATCGGGTGAGTCCTTAGAACT----GGGTA----GT-------------TGC-CATA--------------------------------TCC---CCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACCA---CC-------------------------------------------------------------TACA--TA-------TTATT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAC--------------------AAATTGTCC---TCCAACAACGTGCCAA----CAATGCC--G--T--------GTGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C---CGGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGGCAATCAGGTGAGTTCCTAGAGTCCTTGGGGTA----GT-------------AT---------------------ATT---CATA-------TTC---CCTAGCC---ATTTGTG--TC--TTTGT------------CCATAAAACACA-------TAAACA-------------------------------------------------CCTACA--CA-------TAATT------C--------------------------------C------ACTC------------A-------------------CA-TTGTACA-------------------AAATTGTCC---TTCAAAAACG------------ATG----------------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

C---AAGGATGACAGCGC-GGTGCTGACACGCAACAGCGAGGCCAGACAATCGGGTAAGTCCTCAAAACT----AGGTA----GT-------------AGT-CCCT--------------------------------TCC---CCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACAC---CC-------------------------------------------------------------TTCA--CA-------TTATT------C--------------------------------C------ACTC------------A-------------------CA-TTGTAA--------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------GTGTAATAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCAGTGGGTGGC---------	Size	Hit Count	Total Norm	Total
No Reads

dm3

C---AAGGATGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACT----AGGTG----GT-------------ATT-CCCA--------------------------------TTT---CCGAGCT---ATTTGTG--TC--TTTGT------------CCATACACCTGCTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................AGCGAGGCCAGACAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0
C---AAGGATGATAACGC-GTTGTTGACGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TC--TTTGT------------CCATACACCTGCTC......................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCGCAACAGCGAGGCCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATAA-TCCGCCGCCATT......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAACAGCGAGGCCAGACAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........GATAACGC-GTTGTTGACGCGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....AAGGATGATAACGC-GTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCC--G--T--------ATGTATTAGATAA-TCCGCC............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGACGCGCAACAGCGAGGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................G----------CAATGCC--G--T--------ATGTATTAG.......................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGATAACGC-GTTGTTGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TGTTGACGCGCAACAGCGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTTGACGCGCAACAGCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCAGACAATCGGGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

C---AAGGACGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACT----AGGTG----GT-------------ATT-CCCA--------------------------------TTT---CCTAGCC---ATTTGTG--TC--TTTGT------------CCATACACCTACTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCAGTGGGTGGC---------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................GCAACAGCGAGGCCAGGCAATCGGGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
C---AAGGACGATAACGC-GTTGTTGACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
C---AAGGACGATAACGC-GTTGTTGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AAGGACGATAACGC-GTTGTTGACGCGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....AAGGACGATAACGC-GTTGTTGACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGCAACAGCGAGGCCAGGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........GATAACGC-GTTGTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGACGCGCAACAGCGAGGCCAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATGCCACCAGTGGGT............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......GACGATAACGC-GTTGTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CA--------------------------------TTT---CCTAGCC---ATT...............................................................................................................................................................................................................................................................................................................................................................	15	5	0.40	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................CA--------------------------------TTT---CCTAGCC---ATG...............................................................................................................................................................................................................................................................................................................................................................	15	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0

droSec2

T---AAGGACGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACT----AGGTG----GT-------------ATT-CCCA--------------------------------TTT---CCTAGCT---ATTTGTG--TC--TTTGT------------CCATACACCTACTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................AACAGCGAGGCCAGGCAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	1	2	0
....AAGGACGATAACGC-GTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
......................GTTGACGCGCAACAGCGAGGCCAGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.....AGGACGATAACGC-GTTGTTGACGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................GACGCGCAACAGCGAGGCCAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...............................CAACAGCGAGGCCAGGCAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........................TGACGCGCAACAGCGAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

C---AAGGATGATAACGC-GTTGTTGGCGCGCAACAGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACT----GGGTG----AA-------------ATT-CCCA--------------------------------TTT---GCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACCCTCTCC-------------------------------------------------------------TTCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACAACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCATTGCCA-ACAACGATGCCACCGGTGGGT............	32	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8
........ATGATAACGC-GTTGTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	8.00	8	1	1	1	0	0	0	5	0	0	0	0
.......GATGATAACGC-GTTGTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
....AAGGATGATAACGC-GTTGTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
........................TGGCGCGCAACAGCGAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.............AACGC-GTTGTTGGCGCGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....AAGGATGATAACGC-GTTGTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........ATGATAACGC-GTTGTTGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................CAACAGCGAGGCCAGACAATCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACAACGATGCCACCGGTGGGT............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GGATGATAACGC-GTTGTTGGCGCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................GCAACAGCGAGGCCAGACAATCGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........GATAACGC-GTTGTTGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GCGCAACAGCGAGGCCAGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
C---AAGGATGATAACGC-GTTGTTGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......GATGATAACGC-GTTGTTGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GGATGATAACGC-GTTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................CAACAGCGAGGCCAGACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......GATGATAACGC-GTTGTTGGCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................CGCAACAGCGAGGCCAGACAATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................GGCGCGCAACAGCGAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....AAGGATGATAACGC-GTTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
C---AAGGATGATAACGC-GTTGTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

C---AAGGATGATAACGC-GTTGTTGACGCGCAACAGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACT----GGGTG----GT-------------ATT-CCCA--------------------------------TTT---GCTAGCC---ATTTGTG--TC--TCTGT------------CCATACACCCTCTCC-------------------------------------------------------------TCCA--CA-------TTGTT------T------------------------------CAC------ACTC------------A-------------------CA-TTGTA---------------------AAATTGTCC---TCCAACAACG----------CAATGCC--G--T--------ATGTATTAGATAA-TCCGCCGCCATTGCCA-ACGACGATGCCACCGGTGGGTGGC---------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................GTTGACGCGCAACAGCGAGGCCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
..............................................ACAATCGGGTAAGTTCTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
........ATGATAACGC-GTTGTTGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......GATGATAACGC-GTTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
....AAGGATGATAACGC-GTTGTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
......................GTTGACGCGCAACAGCGAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCCACCGGTGGGT............	19	1	1.00	1	0	0	0	1	0	0	0
......................GTTGACGCGCAACAGCGAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0

dgr_329

scaffold_15110:13732638-13732814 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads