dgr_328

CDS [Dgri\GH14899-cds]; exon [dgri_GLEANR_14738:8]; CDS [Dgri\GH14899-cds]; exon [dgri_GLEANR_14738:7]; intron [Dgri\GH14899-in]

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+
Gypsy8-I_Dpse-int	LTR	Gypsy	-

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AACAACAACAGCGACAGAACTCCAACAGCAGCAATAGCTGTGATCAAGCGGTAAGTTCAGGCTTTGACCTTTGCGATTGCACCACAAAATGAAATCATTAGGAGGGCTCAGCCAGCCGGCGATATCTGTTTTGAGGTGACGCCCCATTTGGCAGGCAGGCAGCGGGGCAGCAGCAGACACCCAATTAAATCGCTTTACATGGAACCACAGATTCTGGCCACTAATGACGGCTTTTTCTGTTTTTTTTCTTCTCTTTTATTTTTTGACCCACACACACACACATACAGGAGCAGCAGCAGCAGCAGCAGCAGTCGCAGTCGCAGTTGCCTGCATCGCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC ************************************************..((((....))))((((...(((((((((.((.((((((((.(((....((..(((...)))..))...))).)).)))))).))((..(((((.....((......))...)))))..))........(((..((((....))))..)))....(((((....((((.........))))...)))))..........(((((.(((......................))).)))))..((.((....)).)).)))))))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body
....................................................................................................................................................TGGCAGGCAGGCACCGGAG..............................................................................................................................................................................................................	19	2	10	0.10	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15110:13414448-13414820 -	dgr_328	AACAACAACAGCGACAGA---A-CTCCAACAGCAGC---------A---ATAGCTGTGATCAAGCGGTAAGTTC-AGGCTTTG---------------------ACCTTTGCGATTGCACCA--CAAAATGAAATCATTAG---------------------------------------------------------------------------------GAGGGCTCAGCCAGC---------------------------------------------------------------CGGCGATATCTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGGTGACGCCCCAT------T-----------------TGGCAGGCAGGCAGCGGGGCAGCAGCAG---------------ACACCCAATTAAA--------TCGCTTTACATGGA---------------------------------------------------------------ACCACAGAT---------TCTGGCC-ACTAATGACGGC----------------TTT---TTCT--------GTTTTT-------------T-------------TTCTTCTCT-TTTATT---------------TTTTGAC-------CCACA------CACACAC--------------------------------------------------------------------------------------------------------------------------------------ACATACAG-------GAGCAGCAGCAGCAG---C---------------AGCAGCAGTCGCAGTCGCAGTTGC-----C------TGCATCGCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC
droVir3	scaffold_13049:5631351-5631693 +	dvi_18511	AACAGCAGCAGCAGCAGA----ACA---GCAGC------------A---ATAGCTGTGATCAAACGGTAAGTTC-AGGCTTTG---------------------ACCTTTGCGATTGCAGCACACAAAATGAAATCATTAG---------------------------------------------------------------------------------GAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCCGTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGCTGACGCCCCTACAGCAGACA----------------------------------------CAG---------------ACACCCAATTAAA--------CCGCTTTACACGG-CC--------------------------------------------------------CAAGAGCCACAGAT---------TCTGGTC-ACTAATGACGGC----------------TTTACGT--------T-----TTTC------TGACCTC---------------CTCCTCC-CCCACT---------------CT------------------------ACTAAA--------------------------------------------------------------------------------------------------------------------------------------ACATACAG-------GAGCAGTCGCAGCAG---C---------------AGTCGCAGCCGCAGTCGCAGTTGC-----AGTCGCAGCCATCGCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC
droMoj3	scaffold_6680:3973681-3974005 +	dmo_2339	AC-AGCAGC------------------------------------A---ATAGCTGCGATCAAAAGGTAAGTTTCAGGCTTTG---------------------ACCTTTGCGATTGCAGCA--CAAAATGAAATCATTAG---------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGGCCAACCAACTCC----------------------------------------------CGCGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTTAACGCCCCACCAAAAGT----------------------------CCGCA---------CAG---------------ACGCCCAATTAAA--------GCGCTTTACATGG-------------------------------------------------------------------ACAGAT---------TCTGGCCAACTAATGATGGC----------------TTTAAAT--------TTGGTT--TC-----------TT--------------------TT-TTCATT---T-----------TCTTGACCTCCC-----------------ACC--------------------------------------------------------------------------------------------------------------------------------------ACATGCAG-------GACCAGCAGCAGCAG---CAGCAGCAGCAGC---AACAACAATTGCAGTTGCAGTT--------------------GCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC
droWil2	scf2_1100000004511:6187580-6188010 +		AATAACATCAACAACAAC---AACA---ACAAC------------A---ACAACAACGATCAACCGGTAAGTTT-AGTCTTTGACCT----------------AACCTTTGCGATTGCACAA----AAATGAAATCATTAA---------------------------------------------------------------------------------GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGGTTTATTTTTTAGTTTGTGTTTGGTTT-----------------------------------------------------------------------------------------------TTG------T-----------------TGGTTTGCTGTCTGCAGGGCTGCGGC-A---------------ACACCCAATTAAC--------CCGCTTTACCTGG-CCCCAACGCAAAGCAAAGCAAAACAAAAACCCAACCGGGCCCAGACC----CAAACCCAACC-CCAAAAGAA---------CTTGGCC-ACTAATGACAATA----------------T---------------------------------CTCTTTCTCTCCCGCCTAT----TT------------GCCATCTGCCTTCT-------G-----------------ACC--------------CCA-----------------------------CCACACACACACACACACACAC------------------------------------------------------------------ACATACCA-------CAGGAGCAACAGTCCA---------------------ATCCATTGCAGACC--------------TCGCAGTCATCGCATTTGGTTAAATTCATTAGCGTCGACCAAGTCACGAC
dp5	XR_group6:1628992-1629406 +		AACAACATAAACAGCAACAACAACAACAACAACAAC---------AACAACAATAATGATCACCCGGTAAGTTT-AGAGTTTG---------------------ACCTTTCAGATTGCACAAAATATACAAAAATCATTGGAGTTCGAACTGGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGGTTCACGCCCCAAAAAGAGTCG----------------------------------------CAAGTCCGAAGCCCAGTCCGAGCCAATTAAC--------CCGATCTACATGA-CC--------AGGCCAAGCCAAGTCCAGGCCCGGCCAGGCCCGGCCACCGCCAGAC--AAA-ATAAACAGAACTCCCCGGCCAAATCC-ACTAATGACAACGATTCCGCTGTGTGTTTTT---TTTT--------GTTGTTGTTGTTTCAATCTT------------------------TTTTTGTTTTGC--TCTGAC-TCT-------G-----------------ACC--------------CCA-------------------------------------------------------------------------------------------------------------------------ACAG-------GAGC---------CG---G---------------------------CATC--------------------GCCATCGCATTTGGTTAAATTCATTAGCGTCGACCAAGTCACGAC
droPer2	scaffold_28:714681-714998 -		ACTGCCTGCAGCAGCAGA---GGCA---GCAGC------------A---GCACCTGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGACGCTGCTGCT----T---CT------GCTGCTGCTGCAGCGGTACAGAATCCAAAGGAATGCAGCAA------------------------------GA-AATTAAGACTGGCTGTGGATGT----------TGCTGAGGCTCAGTCTGCGCAGTGGCGTGTGGAGCACGGCGCGACGGCCAATCAATTCTCAGAAATGAAAACCCCGTCTTCGGTCTGTATT------ACCGTTGCCGTTGTTCTTTTTTCCTTCTT-----------------------------------------------------------------------------------------------------------------------------------CTTTTGCTGCAGAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------A-TCATCAGCAGCAGCAGCAGCAGCAGC---------------AGCAGCAGCAGCAGCAACAGCAG-----CG------GGCA--------------------------------------GCG
droAna3	scaffold_12929:2933150-2933446 -		AACCATATCAGGGCCA------------GCAGC---AGCAGTTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------TCCAGCAGCAACTTCAGCCTCCTTCGCAGCTGCAACAGCAACTCCAGGCCCAGTCA---CAGTT---------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CAGCAGCAACTTAATCA----A---CAGCCGCAGCAG-------------------------------------------------------------------AACAATTACATTTGGCCACCGAATTCTCGTCAGCCAGCCGTAGGTTCGAACGCGCAGCAGCAACAGT-------------------------------------------ATCTTCAGGCGGCTAACTTGCAGCAGCAACATCTTCAGAA----------C-----------------------------------------------------------------------------------------------------------------------------------AACTCGCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------A-GCAACAGCAGCAGCAGCAACAG---C---------------AGCAGCAGCAGCAGTTGCAGC---------------------------------------------------------AGC
droBip1	scf7180000396589:47133-47565 -		AACAATAACAGTGAT---------------------------------------------CGGCCGGTGAGTTTC-CCATTTTACCTTTACAGTTTAGAGTATGACCTTTTCCATTTCACAA--GAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------TTACACAGAAAAAAAAAAT------------------------------GGTTCCAC------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------------------------------------------------AT-AATAAATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTCTTAATGAGCTTGGCTTTGCAAATAAGATAGACTAATTTTTTTTCTGTGTAAAAGTCAGAGGGCAGGATCAAGAGGCCAGGCA---------------TCGGGCTAACGCCCCTGCCTGATCC-----------------------------------------------------------CCAGCCAATTAAC--------CCTACGAACATGA-CC--------AGCCC----------G------------------------------------GTAAACAGAA---------CTTGGCC-ACTAATGACATCGAATCCCCTG-----------------------------------------------------------T---------------TTTGC--TCTGAC-TCT-------G-----------------ACC--------------CCAAACAGGAGCCCGCGTCGCCATCGCCACCATCGCCCCTGCCATCGGCGTCATCGCCAT------------------------------------------------------------------C------------------------------------------------------------------------------GCCATCGCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC
droKik1	scf7180000302441:970387-970717 +		AACAGCAGCAGCAGCAGC---ACAA---TAACCTGG---------G---ACTGCTGTGGAACGAAGGCAA--------------------------------------------------------------------TCA---------------------------------------------------------------------------------GAC---------CATC------------------TTCCTGGTGGGCCTCAATGATCAGCATATGACGGCGCATACGCTGGGCAACATTAGTTTAACAGC-------------------CACCACAGCAGCACCAACTCCAGCAGCAGCAGCACCTGG---------AGCAGC---AACAACAGCCCCTCCGCCAGCT------GTAGCTCAGCCCAAGAAGCTCCTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCC-ACCAACGCACAA----------------ATT---CCCT--------GCCCAG-------------C-------------ATAGTCTTT-CCCAT------------------CGAGG-------CCAAG------TCCATAA--------------------------------------------------------------------------------------------------------------------------------------TCACACAG-------CAGCAGTTGCAGCAG---C---------------TACAGCAGCAGCAGTTCCAGCC--------------------------------------------------------TGC
droFic1	scf7180000454105:1128575-1128896 -		AACAACAACAGCAGCAGC---ACCA---ACAGCAGC---------A---ATCCCCCCGCGTCGGTGGTCAGTGG-AGGCACCA------------------------------------------------------CCA----------------------------------CCCCAGCACCGCCGCCCACCGC--------------------------GGTGGCCCAGCCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTCGCCCATGCAGCCGCCCAGCCAGGCGGTGCCGCCCTCGCCCACGCGCAGCAGCCTGCTGCAGCAGCAGCAGCAGCACCAGTCGCCCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAACGGTCTGCAGCCCTACGTGGC---------------------------------------------------------------GCCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAGCAC---CTC---------TCCTCGCCTCCGATGCAGGACT---------------G-GAACTGGCAGCAGCAGCAGCAG---C---------------AACAGCAACAGCAACATCAGC---------------------------------------------------------AGT
droEle1	scf7180000491028:316871-317197 -		AGCAGCAGCAGCAGCAGC---AGCA---GTAGC------------A---GTAGCTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------GTAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CCATAGAAAGTTTTTCA----T-----------TTTGCGGTTGACTCTGGAATT----CGAAAATGTTGCGCAAGGAGGAGCCCTCCGGCGGACCACGACCCAC-------------------------------------------------------------------------------------------CCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACGGGTGCGTATGCAGCTGGTGCCGAACTTTAACTGGAGCAAGGACA-------------------------------------------------------------------------------------------------------------------------------------------TCCAGAGGGGCGGAGCT-GCGAATAAGGAGCATTCC-------------------TGAGCTTTGGCT--TC-----------T---------------------GCTCCTGT-------------------CGAATTCCAGCTCAAGTTAAGCAGCTTAC--------------------------------------------------------------------------------------------------------------------------------------GCATGCAG-------CAGCAGATGCAACAG---C---------------AGATGCAACAGCAGAATCGGCTAC-----C------TGA---------------------------------------ACC
droRho1	scf7180000779538:296827-297072 +		AGCAGCAGCAGCAGCAGT---AACA---GCAAC------------A---GCAGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAACAAACATT-G--GCGGTTGCACGTGTGGTCATGGAACGG-------------------------------------------------------------------------------------------------ATCCCAATACCAAT-------------------------------------------------A----------CCAAC------ACGACTACCATTGC--------------------------------------------------------------------------------------------------------------------------------------------------CAAT-----------------------------------------------------GGCAGGACATC-ACGGGGAAGAACAAG---------------ATGCGCAAATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCTGCAAC---------AACAATGACTGACTGACCTTTGCACGA----TGGGCGATTCT-C-A-----ATACAGA-------------GCAGCAGCAG---C---------------AACATCAGTTGCAGTTGCAGTTG----------------------------------------------------------
droBia1	scf7180000301518:916689-916959 -		ACCTCCCGCAGCAACACC---TCCC---GCAGC---AGCACCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------TCCCGCAGCAACACCAGAC------------------------------GATGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGC------ACCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGCACCAGC-AATCGCTGCGAGCAATGGCGCCGCTGGCACACATGTGAGAAATGGCC----AGCGCCTACGGAGCAGCAGG--------------------------------CTCCAGTGCGAGCG-----------------------------------------------------------------------------------------------------------------------------------------------TGTCGCCCCCACTGCCGCCGTACATGCCGACGGCCACG------------------------------------------------------------------------CAG-------CAGCAGCAACAGCAGCAGC---------------AACAACAGCAGCAGCAACAGTTGCTGAACG------GAC--------------------------------------GGCC
droTak1	scf7180000415773:202927-203283 -		ATCCGCACCACCCGCACC---ACCA---GCAGCC------GT------------------------------------------------------------------------------------------------TCGGATTCCAGCTGAAGAGCAGCGTGGCTGTCCAGGCGACAACATCGCCGCAAAATGCAAAGTCTGCAATAATTGCTAATCAAACGGCGCTCGGC-------------------------------------------------------------------GAGCCATATCCGGTTGGAGCTGCCGCCGCCTTCGCCACCCA------------TCAGCATCAGCAGCAGCAACATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CAACAGCAACATCAGCA----A---CCGTTGCTGCAGCCGTTGACTCTGGCATT-------------------------------------------------------------------------------------------------GTCCCCACAGCAACCGCAGC-------------------------------------------CTCATCAGGCGGCAAC------GCCACTACAATTGCACAG----------C-----------------------------------------------------------------------------------------------------------------------------------CAATTGATGCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------A-TCAACAGCAGCAGCAGCAGCAA---C---------------AACAGCAGCAACAGCAGCAAC---------------------------------------------------------AGC
droEug1	scf7180000409538:374102-374390 +		AGGCACACCAGCAGCAACAGGCACACCAGCAACAGC---------A---ACAGCCGTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCAGGCGTCACCACAGTTCGGCGTTGGAGGCATTCCCACGATCCCCAGCCCGCCGGCCGTGGTGTTCAACTCGTCGCAAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCC------GCCACCGCCGTCGCAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTAATCTGT---------------ACGCTCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------TCCATTCGC-TCGATC---------------ATTCGAG-------CCGTT------CGCCCGCCTACTCGGCGGCGGCGG-----------------------------CCGCCCATAGCTTCCCGA----------------------------------------------------------------A-----CCACTAT-------------GCGGCAGCAG---C---------------AGCGGCGGCGGCAGTAGCGGC---------------------------------------------------------CGC
dm3	chrX:7936738-7937031 -		AGCAACAACAGCAGCAGC---AACA---TATG------------------------------------------------------------------------GACTATGTGACTGAGCTG--CTA-----------------------------------------------------------------------------------------AGCAAA-GGAGCTGAGAATGTCGGCGGCATGAATGGCAATCATCTGCTGAACTTCAA---CCTGGACATGGCGG--------------------------------------------CGGCCTACCAGCAGAAGCATCCAC---A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAGCAGGC-----------GCACAACAATGGCTTCAATGTGGCCGATTTCGGCATGGCTGGATTCGATGGTTTAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCTGC------------ATCAT---------------TCCTCGA----TCTGGAGCCCT----------------------CGCTTCAGCAGCAGCAG---A---------------TGCAGCAGATGCAATTGCAGC---------------------------------------------------------AGC
droSim2	3l:7308655-7309011 +		ACCAGCAACCGT------------------------------------------------------------------------------------------------------------------------------TCGGATTCCAGCTGAAGAGCAGCGTGGCTGTCCAGGCGACGACATCGCCGCAAAATGCAAAGTCTGCAATAATTGCTAATCAAACGGCGCTCGGC-------------------------------------------------------------------GAGCCATATCCGGTTGGAG---CCGCCGCCTTTGCCGCCCATCAGCAGCAACATCAGCATCAGCAGCAGCAGCACCAGC---------AC---------CAGCA---------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CATCAGCAACATCAGCA----A---CCGTTGCTGCAGCCGTTGACTCTGGCATT-------------------------------------------------------------------------------------------------GTCCCCACAGCAACCGCAGC-------------------------------------------CTCATCAGGCGGCAAC------GCCACTACAATTGCACAG----------C-----------------------------------------------------------------------------------------------------------------------------------CAATTGATGCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------A-TCAACAGCAGCAGCAGCAGCAG---C---------------AGCAGCAGCAACAACAGCAGC---------------------------------------------------------AGC
droSec2	scaffold_0:10708309-10708610 -		AGCAGCAACAGCGAG---------C---GTTGC---AGCAAT------------------------------CTG-CCTCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCGCAACAGCAGCAGCAGCAACAACAGCAGCACGTGG---------TCCTGC---ACCAAGT---------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CCGCAGACGCACCTGCA----CCAAGCGG--CCCTAT-------------------------------------------------------------------CACAGCCACAC-------------------------------------TATGTGCCTCAGCAGCAGC-------------------------------------------CTCAGCAGGCGCCGCCTCCACAGCAGCAACATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------CGCATCACATGCA---------------------------------------------------------------ACAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCCAGCAGC------------AGCAA---------------TT---------GGTGGAGACCCAGCATCAGCACGTGCAG-------AAGCAGCACCAGTCGCAGC---------CACAAGTGCAGCAGCCGCCGCCACAGCTGC-------------------------------------------------------TT
droYak3	2L:11473807-11474079 +		ACCTCCCGCAGCAACACC---TTTC---GCAGC---AGCACCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------TCCCGCAGCAACACCAGAC------------------------------CATGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAACACCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGCATCAGC-AATCGCTGAGGGCGATGGCGCCGCTGGCACACATGTGAGAAATGGCC----AGCGCCTATGGAGCAGCAGG--------------------------------CTCCAGTGTGAGCG-----------------------------------------------------------------------------------------------------------------------------------------------TTTCGCCTCCACTGCCGCCGTACATGCCGACGGCCCCGCAGCAAC------------------------------------------------------------------A-GCAACAGCAGCAGCAGCAACAA---C---------------AGCAGCAGCAGCAGCAACAGTT---------------------------------------------------------GC
droEre2	scaffold_4929:9419565-9419849 +		CGCAGCAACACCTTT---------C---GCAGC---AGCACCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------TCCCGCAGCAACACCAGAC------------------------------CATGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAACACCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGCATCAGC-AATCGCTGAGGGCGATGGCGCCGCTGGCACACATGTGAGAAATGGCC----AGCGCCTATGGAGCAGCAGG--------------------------------CTCCAGTGTGAGCG-----------------------------------------------------------------------------------------------------------------------------------------------TTTCGCCTCCACTGCCGCCGTACATGCCGACGGCCCCGCAGCAAC------------------------------------------------------------------AG-------CAGCAGCAGCAGCAGCAGC---------------AACAACAGCAGCAGCAACAGTTGCTAAACG------GAC----------------------------GGCCTAGTC--CGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

AACAACAACAGCGACAGA---A-CTCCAACAGCAGC---------A---ATAGCTGTGATCAAGCGGTAAGTTC-AGGCTTTG---------------------ACCTTTGCGATTGCACCA--CAAAATGAAATCATTAG---------------------------------------------------------------------------------GAGGGCTCAGCCAGC---------------------------------------------------------------CGGCGATATCTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGGTGACGCCCCAT------T-----------------TGGCAGGCAGGCAGCGGGGCAGCAGCAG---------------ACACCCAATTAAA--------TCGCTTTACATGGA---------------------------------------------------------------ACCACAGAT---------TCTGGCC-ACTAATGACGGC----------------TTT---TTCT--------GTTTTT-------------T-------------TTCTTCTCT-TTTATT---------------TTTTGAC-------CCACA------CACACAC--------------------------------------------------------------------------------------------------------------------------------------ACATACAG-------GAGCAGCAGCAGCAG---C---------------AGCAGCAGTCGCAGTCGCAGTTGC-----C------TGCATCGCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droVir3

AACAGCAGCAGCAGCAGA----ACA---GCAGC------------A---ATAGCTGTGATCAAACGGTAAGTTC-AGGCTTTG---------------------ACCTTTGCGATTGCAGCACACAAAATGAAATCATTAG---------------------------------------------------------------------------------GAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCCGTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGCTGACGCCCCTACAGCAGACA----------------------------------------CAG---------------ACACCCAATTAAA--------CCGCTTTACACGG-CC--------------------------------------------------------CAAGAGCCACAGAT---------TCTGGTC-ACTAATGACGGC----------------TTTACGT--------T-----TTTC------TGACCTC---------------CTCCTCC-CCCACT---------------CT------------------------ACTAAA--------------------------------------------------------------------------------------------------------------------------------------ACATACAG-------GAGCAGTCGCAGCAG---C---------------AGTCGCAGCCGCAGTCGCAGTTGC-----AGTCGCAGCCATCGCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAGCCGCAGTCGCAG.............................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAGCCGCAGTCGCAG.............................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AC-AGCAGC------------------------------------A---ATAGCTGCGATCAAAAGGTAAGTTTCAGGCTTTG---------------------ACCTTTGCGATTGCAGCA--CAAAATGAAATCATTAG---------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGGCCAACCAACTCC----------------------------------------------CGCGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTTAACGCCCCACCAAAAGT----------------------------CCGCA---------CAG---------------ACGCCCAATTAAA--------GCGCTTTACATGG-------------------------------------------------------------------ACAGAT---------TCTGGCCAACTAATGATGGC----------------TTTAAAT--------TTGGTT--TC-----------TT--------------------TT-TTCATT---T-----------TCTTGACCTCCC-----------------ACC--------------------------------------------------------------------------------------------------------------------------------------ACATGCAG-------GACCAGCAGCAGCAG---CAGCAGCAGCAGC---AACAACAATTGCAGTTGCAGTT--------------------GCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................GGCTTTG---------------------ACCTTTGCGACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------GACCAGCAGCAGCAG---CAGC.............................................................................................	20	12	0.08	1	0	0	0	0	1	0

droWil2

AATAACATCAACAACAAC---AACA---ACAAC------------A---ACAACAACGATCAACCGGTAAGTTT-AGTCTTTGACCT----------------AACCTTTGCGATTGCACAA----AAATGAAATCATTAA---------------------------------------------------------------------------------GAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGGTTTATTTTTTAGTTTGTGTTTGGTTT-----------------------------------------------------------------------------------------------TTG------T-----------------TGGTTTGCTGTCTGCAGGGCTGCGGC-A---------------ACACCCAATTAAC--------CCGCTTTACCTGG-CCCCAACGCAAAGCAAAGCAAAACAAAAACCCAACCGGGCCCAGACC----CAAACCCAACC-CCAAAAGAA---------CTTGGCC-ACTAATGACAATA----------------T---------------------------------CTCTTTCTCTCCCGCCTAT----TT------------GCCATCTGCCTTCT-------G-----------------ACC--------------CCA-----------------------------CCACACACACACACACACACAC------------------------------------------------------------------ACATACCA-------CAGGAGCAACAGTCCA---------------------ATCCATTGCAGACC--------------TCGCAGTCATCGCATTTGGTTAAATTCATTAGCGTCGACCAAGTCACGAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............CAAC---AACA---ACAAC------------A---ACAACAACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	1	0
.................C---AACA---ACAAC------------A---ACAACAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0

dp5

AACAACATAAACAGCAACAACAACAACAACAACAAC---------AACAACAATAATGATCACCCGGTAAGTTT-AGAGTTTG---------------------ACCTTTCAGATTGCACAAAATATACAAAAATCATTGGAGTTCGAACTGGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGGTTCACGCCCCAAAAAGAGTCG----------------------------------------CAAGTCCGAAGCCCAGTCCGAGCCAATTAAC--------CCGATCTACATGA-CC--------AGGCCAAGCCAAGTCCAGGCCCGGCCAGGCCCGGCCACCGCCAGAC--AAA-ATAAACAGAACTCCCCGGCCAAATCC-ACTAATGACAACGATTCCGCTGTGTGTTTTT---TTTT--------GTTGTTGTTGTTTCAATCTT------------------------TTTTTGTTTTGC--TCTGAC-TCT-------G-----------------ACC--------------CCA-------------------------------------------------------------------------------------------------------------------------ACAG-------GAGC---------CG---G---------------------------CATC--------------------GCCATCGCATTTGGTTAAATTCATTAGCGTCGACCAAGTCACGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................ACAACAACAAC---------AACAACAATAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	2	0
.....................AACAACAACAACAAC---------AACAACAATAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................CAACAACAACAACAAC---------AACAACAATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	13	0.23	3	0	0	0	0	0	0	0	3	0	0
...............AACAACAACAACAACAACAAC---------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................CAACAACAACAACAACAAC---------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............CAACAACAACAACAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.............GCAACAACAACAACAACAACAAC---------AACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........CAGCAACAACAACAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACTGCCTGCAGCAGCAGA---GGCA---GCAGC------------A---GCACCTGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGACGCTGCTGCT----T---CT------GCTGCTGCTGCAGCGGTACAGAATCCAAAGGAATGCAGCAA------------------------------GA-AATTAAGACTGGCTGTGGATGT----------TGCTGAGGCTCAGTCTGCGCAGTGGCGTGTGGAGCACGGCGCGACGGCCAATCAATTCTCAGAAATGAAAACCCCGTCTTCGGTCTGTATT------ACCGTTGCCGTTGTTCTTTTTTCCTTCTT-----------------------------------------------------------------------------------------------------------------------------------CTTTTGCTGCAGAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------A-TCATCAGCAGCAGCAGCAGCAGCAGC---------------AGCAGCAGCAGCAGCAACAGCAG-----CG------GGCA--------------------------------------GCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC---------------AGCAGCAGCAG......................................................................	22	20	0.05	1	0	1	0	0	0	0

droAna3

AACCATATCAGGGCCA------------GCAGC---AGCAGTTGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------------------TCCAGCAGCAACTTCAGCCTCCTTCGCAGCTGCAACAGCAACTCCAGGCCCAGTCA---CAGTT---------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CAGCAGCAACTTAATCA----A---CAGCCGCAGCAG-------------------------------------------------------------------AACAATTACATTTGGCCACCGAATTCTCGTCAGCCAGCCGTAGGTTCGAACGCGCAGCAGCAACAGT-------------------------------------------ATCTTCAGGCGGCTAACTTGCAGCAGCAACATCTTCAGAA----------C-----------------------------------------------------------------------------------------------------------------------------------AACTCGCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------A-GCAACAGCAGCAGCAGCAACAG---C---------------AGCAGCAGCAGCAGTTGCAGC---------------------------------------------------------AGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---C---------------AGCAGCAGCAGCAGTTGCAGC---------------------------------------------------------A..	25	6	0.17	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GCAACAGCAGCAGCAGCAAC......................................................................................................	21	20	0.10	2	0	0	1	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG---C---------------AGCAGCAGCAGCAGT..................................................................	22	11	0.09	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAG---C---------------AGCAG............................................................................	26	15	0.07	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAG---C---------------AGCAGCAGCAGCAG...................................................................	27	17	0.06	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACAG---C---------------AGCAG............................................................................	25	18	0.06	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GCAACAGCAGCAGCAGCAACAG---C---------------A................................................................................	25	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAG---C---------------AGC..............................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GCAACAGCAGCAGCAGCAACAG---C---------------.................................................................................	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG---C---------------AGCAGCAGCAGCA....................................................................	25	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAG---C---------------AGCAGCAGCAGCA....................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

AACAATAACAGTGAT---------------------------------------------CGGCCGGTGAGTTTC-CCATTTTACCTTTACAGTTTAGAGTATGACCTTTTCCATTTCACAA--GAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------TTACACAGAAAAAAAAAAT------------------------------GGTTCCAC------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------------------------------------------------------------------------------------AT-AATAAATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTCTTAATGAGCTTGGCTTTGCAAATAAGATAGACTAATTTTTTTTCTGTGTAAAAGTCAGAGGGCAGGATCAAGAGGCCAGGCA---------------TCGGGCTAACGCCCCTGCCTGATCC-----------------------------------------------------------CCAGCCAATTAAC--------CCTACGAACATGA-CC--------AGCCC----------G------------------------------------GTAAACAGAA---------CTTGGCC-ACTAATGACATCGAATCCCCTG-----------------------------------------------------------T---------------TTTGC--TCTGAC-TCT-------G-----------------ACC--------------CCAAACAGGAGCCCGCGTCGCCATCGCCACCATCGCCCCTGCCATCGGCGTCATCGCCAT------------------------------------------------------------------C------------------------------------------------------------------------------GCCATCGCATTTGGTTAAATTCATTAGCGTGGACCAAGTCACGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACAGCAGCAGCAGCAGC---ACAA---TAACCTGG---------G---ACTGCTGTGGAACGAAGGCAA--------------------------------------------------------------------TCA---------------------------------------------------------------------------------GAC---------CATC------------------TTCCTGGTGGGCCTCAATGATCAGCATATGACGGCGCATACGCTGGGCAACATTAGTTTAACAGC-------------------CACCACAGCAGCACCAACTCCAGCAGCAGCAGCACCTGG---------AGCAGC---AACAACAGCCCCTCCGCCAGCT------GTAGCTCAGCCCAAGAAGCTCCTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCC-ACCAACGCACAA----------------ATT---CCCT--------GCCCAG-------------C-------------ATAGTCTTT-CCCAT------------------CGAGG-------CCAAG------TCCATAA--------------------------------------------------------------------------------------------------------------------------------------TCACACAG-------CAGCAGTTGCAGCAG---C---------------TACAGCAGCAGCAGTTCCAGCC--------------------------------------------------------TGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACAACAACAGCAGCAGC---ACCA---ACAGCAGC---------A---ATCCCCCCGCGTCGGTGGTCAGTGG-AGGCACCA------------------------------------------------------CCA----------------------------------CCCCAGCACCGCCGCCCACCGC--------------------------GGTGGCCCAGCCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTCGCCCATGCAGCCGCCCAGCCAGGCGGTGCCGCCCTCGCCCACGCGCAGCAGCCTGCTGCAGCAGCAGCAGCAGCACCAGTCGCCCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAACGGTCTGCAGCCCTACGTGGC---------------------------------------------------------------GCCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAGCAC---CTC---------TCCTCGCCTCCGATGCAGGACT---------------G-GAACTGGCAGCAGCAGCAGCAG---C---------------AACAGCAACAGCAACATCAGC---------------------------------------------------------AGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCAGCAGCAGCAGCAGC---AGCA---GTAGC------------A---GTAGCTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------GTAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CCATAGAAAGTTTTTCA----T-----------TTTGCGGTTGACTCTGGAATT----CGAAAATGTTGCGCAAGGAGGAGCCCTCCGGCGGACCACGACCCAC-------------------------------------------------------------------------------------------CCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACGGGTGCGTATGCAGCTGGTGCCGAACTTTAACTGGAGCAAGGACA-------------------------------------------------------------------------------------------------------------------------------------------TCCAGAGGGGCGGAGCT-GCGAATAAGGAGCATTCC-------------------TGAGCTTTGGCT--TC-----------T---------------------GCTCCTGT-------------------CGAATTCCAGCTCAAGTTAAGCAGCTTAC--------------------------------------------------------------------------------------------------------------------------------------GCATGCAG-------CAGCAGATGCAACAG---C---------------AGATGCAACAGCAGAATCGGCTAC-----C------TGA---------------------------------------ACC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAGCAGCAGCAGCAGT---AACA---GCAAC------------A---GCAGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAACAAACATT-G--GCGGTTGCACGTGTGGTCATGGAACGG-------------------------------------------------------------------------------------------------ATCCCAATACCAAT-------------------------------------------------A----------CCAAC------ACGACTACCATTGC--------------------------------------------------------------------------------------------------------------------------------------------------CAAT-----------------------------------------------------GGCAGGACATC-ACGGGGAAGAACAAG---------------ATGCGCAAATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCTGCAAC---------AACAATGACTGACTGACCTTTGCACGA----TGGGCGATTCT-C-A-----ATACAGA-------------GCAGCAGCAG---C---------------AACATCAGTTGCAGTTGCAGTTG----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACCTCCCGCAGCAACACC---TCCC---GCAGC---AGCACCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------TCCCGCAGCAACACCAGAC------------------------------GATGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGC------ACCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGCACCAGC-AATCGCTGCGAGCAATGGCGCCGCTGGCACACATGTGAGAAATGGCC----AGCGCCTACGGAGCAGCAGG--------------------------------CTCCAGTGCGAGCG-----------------------------------------------------------------------------------------------------------------------------------------------TGTCGCCCCCACTGCCGCCGTACATGCCGACGGCCACG------------------------------------------------------------------------CAG-------CAGCAGCAACAGCAGCAGC---------------AACAACAGCAGCAGCAACAGTTGCTGAACG------GAC--------------------------------------GGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATCCGCACCACCCGCACC---ACCA---GCAGCC------GT------------------------------------------------------------------------------------------------TCGGATTCCAGCTGAAGAGCAGCGTGGCTGTCCAGGCGACAACATCGCCGCAAAATGCAAAGTCTGCAATAATTGCTAATCAAACGGCGCTCGGC-------------------------------------------------------------------GAGCCATATCCGGTTGGAGCTGCCGCCGCCTTCGCCACCCA------------TCAGCATCAGCAGCAGCAACATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CAACAGCAACATCAGCA----A---CCGTTGCTGCAGCCGTTGACTCTGGCATT-------------------------------------------------------------------------------------------------GTCCCCACAGCAACCGCAGC-------------------------------------------CTCATCAGGCGGCAAC------GCCACTACAATTGCACAG----------C-----------------------------------------------------------------------------------------------------------------------------------CAATTGATGCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------A-TCAACAGCAGCAGCAGCAGCAA---C---------------AACAGCAGCAACAGCAGCAAC---------------------------------------------------------AGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGGCACACCAGCAGCAACAGGCACACCAGCAACAGC---------A---ACAGCCGTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCAGGCGTCACCACAGTTCGGCGTTGGAGGCATTCCCACGATCCCCAGCCCGCCGGCCGTGGTGTTCAACTCGTCGCAAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCC------GCCACCGCCGTCGCAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTAATCTGT---------------ACGCTCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------TCCATTCGC-TCGATC---------------ATTCGAG-------CCGTT------CGCCCGCCTACTCGGCGGCGGCGG-----------------------------CCGCCCATAGCTTCCCGA----------------------------------------------------------------A-----CCACTAT-------------GCGGCAGCAG---C---------------AGCGGCGGCGGCAGTAGCGGC---------------------------------------------------------CGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGCAACAACAGCAGCAGC---AACA---TATG------------------------------------------------------------------------GACTATGTGACTGAGCTG--CTA-----------------------------------------------------------------------------------------AGCAAA-GGAGCTGAGAATGTCGGCGGCATGAATGGCAATCATCTGCTGAACTTCAA---CCTGGACATGGCGG--------------------------------------------CGGCCTACCAGCAGAAGCATCCAC---A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAGCAGGC-----------GCACAACAATGGCTTCAATGTGGCCGATTTCGGCATGGCTGGATTCGATGGTTTAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCTGC------------ATCAT---------------TCCTCGA----TCTGGAGCCCT----------------------CGCTTCAGCAGCAGCAG---A---------------TGCAGCAGATGCAATTGCAGC---------------------------------------------------------AGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................TATG------------------------------------------------------------------------GACTATGTGACTGAGCTG--C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATGTGACTGAGCTG--CTA-----------------------------------------------------------------------------------------AGCAAA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC-----------GCACAACAATGGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................ATG------------------------------------------------------------------------GACTATGTGACTGAGCTG--CTA-----------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................ACTGAGCTG--CTA-----------------------------------------------------------------------------------------AGCAAA-GGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGGCCGATTTCGGCATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---A---------------TGCAGCAGATGCAATTGCAGC---------------------------------------------------------A..	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAT---------------TCCTCGA----TCTGGAGCCCT----------------------CCT..................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAT---------------TCCTCGA----TCTGGAGCCCT----------------------C....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCTGGATTCGATGGTTTAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACCAGCAACCGT------------------------------------------------------------------------------------------------------------------------------TCGGATTCCAGCTGAAGAGCAGCGTGGCTGTCCAGGCGACGACATCGCCGCAAAATGCAAAGTCTGCAATAATTGCTAATCAAACGGCGCTCGGC-------------------------------------------------------------------GAGCCATATCCGGTTGGAG---CCGCCGCCTTTGCCGCCCATCAGCAGCAACATCAGCATCAGCAGCAGCAGCACCAGC---------AC---------CAGCA---------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CATCAGCAACATCAGCA----A---CCGTTGCTGCAGCCGTTGACTCTGGCATT-------------------------------------------------------------------------------------------------GTCCCCACAGCAACCGCAGC-------------------------------------------CTCATCAGGCGGCAAC------GCCACTACAATTGCACAG----------C-----------------------------------------------------------------------------------------------------------------------------------CAATTGATGCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------A-TCAACAGCAGCAGCAGCAGCAG---C---------------AGCAGCAGCAACAACAGCAGC---------------------------------------------------------AGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................CAACATCAGCATCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAG---C---------------A................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---C---------------AGCAGCAGCAACAACAGCAGC---------------------------------------------------------A..	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AGCAGCAGCAACAACAGCAGC---------------------------------------------------------AGC	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---C---------------AGCAGCAGCAACAACAGCA..............................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCAGC---------------------------------------------------------A..	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AGCAGCAACAGCGAG---------C---GTTGC---AGCAAT------------------------------CTG-CCTCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCGCAACAGCAGCAGCAGCAACAACAGCAGCACGTGG---------TCCTGC---ACCAAGT---------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------CCGCAGACGCACCTGCA----CCAAGCGG--CCCTAT-------------------------------------------------------------------CACAGCCACAC-------------------------------------TATGTGCCTCAGCAGCAGC-------------------------------------------CTCAGCAGGCGCCGCCTCCACAGCAGCAACATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------CGCATCACATGCA---------------------------------------------------------------ACAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCCAGCAGC------------AGCAA---------------TT---------GGTGGAGACCCAGCATCAGCACGTGCAG-------AAGCAGCACCAGTCGCAGC---------CACAAGTGCAGCAGCCGCCGCCACAGCTGC-------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.GCAGCAACAGCGAG---------C---GTTGC---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0
AGCAGCAACAGCGAG---------C---GTTGC---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCACGTGCAG-------AAGCAGC............................................................................................................	21	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGCATCAGCACGTGCAG-------AAGC...............................................................................................................	25	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAGCATCAGCACGTGCAG-------AAGC...............................................................................................................	27	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA---------------------------------------------------------------ACAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCCAGCAGC------------AG...................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-------AAGCAGCACCAGTCGC...................................................................................................	20	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------CCGCAGACGCACCTGCA----CCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGCATCAGCACGTGCAG-------AAGCA..............................................................................................................	26	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------AGCAA---------------TT---------GGTGGAGACCCAGCA.......................................................................................................................................	25	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------AGCAA---------------TT---------GGTGGAGACCCAGC........................................................................................................................................	23	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------------AGCAA---------------TT---------GGTGGAGACC............................................................................................................................................	23	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------AGCAA---------------TT---------GGTGGAGACCCAGC........................................................................................................................................	24	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGCATCAGCACGTGCAG-------AA.................................................................................................................	23	1	1.00	1	0	0	1	0
....................................AGCAAT------------------------------CTG-CCTCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.GCAGCAACAGCGAG---------C---GTTGC---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCACAGCAGCAACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTCGCAGC---------CACAAGTGC..............................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAG-------AAGCAGCACCAGTCGC...................................................................................................	22	1	1.00	1	1	0	0	0
......AACAGCGAG---------C---GTTGC---AGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------CACAAGTGCAGCAGCCGC.....................................................................	23	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCAGCATCAGCACGTGCAG-------AAGC...............................................................................................................	26	1	1.00	1	0	0	1	0
...AGCAACAGCGAG---------C---GTTGC---AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

droYak3

ACCTCCCGCAGCAACACC---TTTC---GCAGC---AGCACCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------TCCCGCAGCAACACCAGAC------------------------------CATGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAACACCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGCATCAGC-AATCGCTGAGGGCGATGGCGCCGCTGGCACACATGTGAGAAATGGCC----AGCGCCTATGGAGCAGCAGG--------------------------------CTCCAGTGTGAGCG-----------------------------------------------------------------------------------------------------------------------------------------------TTTCGCCTCCACTGCCGCCGTACATGCCGACGGCCCCGCAGCAAC------------------------------------------------------------------A-GCAACAGCAGCAGCAGCAACAA---C---------------AGCAGCAGCAGCAGCAACAGTT---------------------------------------------------------GC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GCAACAGCAGCAGCAGCAACAA---C---------------AGC..............................................................................	27	20	1.20	24	0	0	0	0	0	0	0	0	0	0	24
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCC----AGCGCCTATGGAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA---C---------------AGCAGCAGC........................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA---C---------------AGCAGCAGCAGC.....................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAA---C---------------AGCAGCAGCAGC.....................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA---C---------------AGCAGCAGCAGC.....................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------------------------------------A-GCAACAGCAGCAGCAGCAACA.....................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------------------------------------------------------------A-GCAACAGCAGCAGCAGCA........................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA---C---------------AGCAGCAGCAGCAGC..................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC------------------------------------------------------------------A-GCAACAGCAGCAGCA...........................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---C---------------AGCAGCAGCAGCAGCA.................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC------------------------------------------------------------------A-GCAACAGCAGCAGCA...........................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAA---C---------------AGCAGC...........................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

CGCAGCAACACCTTT---------C---GCAGC---AGCACCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------TCCCGCAGCAACACCAGAC------------------------------CATGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAACACCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGCATCAGC-AATCGCTGAGGGCGATGGCGCCGCTGGCACACATGTGAGAAATGGCC----AGCGCCTATGGAGCAGCAGG--------------------------------CTCCAGTGTGAGCG-----------------------------------------------------------------------------------------------------------------------------------------------TTTCGCCTCCACTGCCGCCGTACATGCCGACGGCCCCGCAGCAAC------------------------------------------------------------------AG-------CAGCAGCAGCAGCAGCAGC---------------AACAACAGCAGCAGCAACAGTTGCTAAACG------GAC----------------------------GGCCTAGTC--CGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAACACCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------------------------------------AG-------CAGCAGCAGCAGC......................................................................................................	19	20	0.20	4	0	0	0	0	0	4	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------------------------------------------------------------AG-------CAGCAGCAGCAGC......................................................................................................	18	20	0.20	4	0	0	0	0	0	4	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAG.............................................................	20	20	0.05	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------------------------------------AG-------CAGCAGCAGCAGCAGCA..................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAG.............................................................	18	20	0.05	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGC---------------AACAACAGC........................................................................	23	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------AG-------CAGCAGCAGCAGCAGCAGC---------------AACAAC...........................................................................	28	20	0.05	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC---------------AACAACAGCAGCA....................................................................	28	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC---------------AACAACAGCAGCA....................................................................	24	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------AACAACAGCAGCAGCAACA..............................................................	21	20	0.05	1	0	0	0	0	1	0	0

dgr_328

scaffold_15110:13414498-13414770 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads