dgr_315

CDS [Dgri\GH16429-cds]; exon [dgri_GLEANR_16125:3]; CDS [Dgri\GH16429-cds]; exon [dgri_GLEANR_16125:2]; intron [Dgri\GH16429-in]

Name	Class	Family	Strand
(TGG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------################################################## GAAGAATTTAACTGGCAGCTCATCCGGCAGCATTGATGGCGGCAATGGAGGTGTTGGTGCTGGCGGCGGAGGTGGTGGAGGTAGTGGTGGTGGTGGAGGAGGTGGAATGAACAATTGCAGCGGTGGCGGTGGCAATGCTCAAACGAATAAC ************************************************...(((.((((.((.((....)).))...)))).)))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
.......................................................................................................................GCGGTGGCGGTGGCAATG..............	18	0	6	0.17	1	1	0
.......................................................................GAGGTGGAGGTGGTGGTGGTGGTGGAG.....................................................	27	2	17	0.06	1	0	1
.....................................................TCGGTGCAGGCGGCGGACG...............................................................................	19	3	18	0.06	1	1	0

Species	Coordinate	ID	Alignment
droGri2	scaffold_15110:10608755-10608905 +	dgr_315	GAAGA-----------------------ATTTAACTGGC------AGCTCATC--------------------CGGCAGCAT---TG-------------------------AT---GGCGGCAATGGAGGTGTTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGTA-GTGGTGGTGGT---GG---------------AGGAGGTGGAATGAACAATTGCAG------CGGTG------------------GCGGTGGCAATGCTCAAACG---------------AATAAC
droVir3	scaffold_12823:2296322-2296454 -		ACCGG-----------------------CAGCA----CACGTCCCAGTCAACG--------------------TGGCGGCAA---TC-------------------------GC---GGCGGAGGCGGCGGCGGCG---------------GCGGTG---------------GTG------CTGG---------------AGGTG---------GC----GG---C------GGTGGTGGATT---CGGTG---GTGGCGGCGG------CGGCAA------CGGTG------------------GCCGCGGCAATGAT--------------------------C
droMoj3	scaffold_6680:2601427-2601568 -		GAAGA-----------------------ACCTAACGGGC------AGCTCGTC--------------------CAACAGCAT---TG-------------------------AT---GCCGGTGGTGCTGGTGGTG------------------------------------GTGGTGGCGGCAGCG---------------GCGGTG------GCGGT-GG---C------GG---TGGCAATGGCAACT------------------------------------------------------GTGGTGGCAATGGTCAAACGCTTGGCTGCAACTCCAACAAT
droWil2	scf2_1100000004515:3267902-3268032 +		GGAGG-----------------------TGGTG----GT------GGGTTG-----------------TTGCATGGCGGAGG---CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------GAGGTG-GTGGT------------GGTGGTGGAGGTGGTGGTGGTGTTGT------TCATGG------CGGAG------------------GCGGTGG----------------------------------
dp5	XR_group6:4892269-4892410 +		GAAGA-----------------------ACATTGGTGGC------AGTTCGTC--------------------CGGCAGCAT---TG-------------------------AT---GGGGGAGGAGAACGCGAAC------------------GCG---GTTTCG------GTG------G------TGGTGCCAATGGAG------GAG---GC----GG---T------GG---CGGCGGCGGCGGTG---GTGGCGGCAT------GCCCAA------CAATT------------------GCAATTCAAACAA---------------------------T
droPer2	scaffold_9:3194839-3194986 +		GAAGA-----------------------ACATTGGTGGC------AGTTCGTC--------------------CGGCAGCAT---TG-------------------------AT---GGGGGAGGAGAACGCGAAC------------------GCG---GTTTCG------GTG------G------TGGTGCCAATGGAG------GAGGCGGT----GG---C------GG---TGGCGGCGGCGGCGGTGGTGGCGGCAT------GCCCAA------CAATT------------------GCAATTCAAACAA---------------------------T
droAna3	scaffold_12916:7396246-7396373 +		GCAGA-----------------------GCATGAGCGGC------AGATACCG--------------------TGGTGGTGC---TG-------------------------GA---GGCCGGTATGGTGGTGGTG---------GCGGCGGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGGTGGTGG------CTACGG------CGGTG------------------GTGGTGGCGGTG-----------------------------
droBip1	scf7180000395839:133333-133489 -		CACGA-----------------------ATGTTACTGTA------AAGGCGTT--------------------GACCAACAC---TT-------CGGTGAAGAGCGAACCAGGTGTGGGCG---GCGGCGGCGGTGGTGGTGGAGGCGGCGGAGGGGGCG---GAGGAG---------GA----------------------------------------GG---C------GG---TGGCGGCGGCAACG------GTAGCGG------CAACAA------TAACG------------------GTGGTAACAACAA---------------------------C
droKik1	scf7180000302592:717818-717956 +		GAATC-----------------------AACTGGGTGGC------ATGGG--------------------CGTCGGCGTTGG---CG-------------------------GT---GTCGGTGTTGGAGGCGTTG------------------------------------GTGTTGGCGGCGTCG---------------GTGTTG------GAGGCG-TTGGCGGTGTT---GG---------------TGTCGGCCAGCTGGGTCCCGGCGG------CGTTG------------------GCGGTGGCAATCCT---------------------------
droFic1	scf7180000453948:485088-485244 -		GATCA-----------------------GCACGAATG----------TCACTG--------------------TGAAGGCGCTGACCAACACATCGGTGAAGAGCGAACCAGGTGTGGGCG---GCGGCGGCGGCG------------------------------------GTG------------------------GCG------GAGGGGGC----GG---C------GG---TGGCGGCGGCAGCG---GCAGTGGCAA------CAACAA------CGGCGGTCCTGGCAACAACG---GTAACG------G---------------------------C
droEle1	scf7180000491006:946348-946476 -		CTGG-------------------------------CAGT------GCTCTGGC--------------------TGGCGTTGG---AG-------------------------GT---GGCAGAGGTGGTGGCAGAG---------GTGGTGGTGGTGGTG---GTGGTG---------GTG----------------------------------------G---T------GG---TGGTGGTGGTG------GTGGTAGTGC------TTCTGG------TGCTG------------------GCGGTGGTGTAGCTCACTCG--------------------A
droRho1	scf7180000773995:809-954 +		GAAGA-----------------------CTGT-GGTGGC------GGAGACTG--------------------CGGCGGCGG---CG-------------------------GT---GGCGGTGGCGGTGGCGGTG------------------------------------GCG---GTGGCGGTGGCG------------GTGGCG------GTGGCG-GT---------------GGCGGTGGCGGTG---GCGGCGGTGTTAA---CTGCGGAGACTGCTGCG------------------GCGGCGGCGATGACTGCT----------------------C
droBia1	scf7180000301623:226652-226756 -		GGTGG-----------------------CTC-------------------------------------------------AT---TG-------------------------GA---CGACATGGTGGTGCTGCTG---------GTGCTGGTGCTGGAG---GTGGTGCTGGTG------CTGG------------TGCTGGTGGTG------GA------------------------------------------TGTGG-------TTCCTG------CGGTG------------GCGGTGGTGGTG-----------------------------------
droTak1	scf7180000415440:30034-30160 +		GAAGA-----------------------ATCTCGGTGGC------AGCTCATC--------------------AGGAAGCAT---TG-------------------------AT---TTAGGAGGCGGCGGCGGTG------------------------------------GAG------A---------------TAGAGGAGGGG------GA----AA---C------GG---TGGAAATGGCAACA---ACAACAACAT------GTCCAA------CAACG------------------GCCTGTCCAACAA---------------------------C
droEug1	scf7180000409456:248600-248743 -		GGACT-----------------------GCCCA---------------------------GCGGACTGAAGCCCGGCATCAT---TG-------------------------GC---GGTGGTGGCGGAGCCGGTG------------------------------------GTGCTGGTGGCGGAG---------------GCGGTG------GCGGGG-CAGCAGACATT---G------------------TCGGTGAGGCGGGCATTGGTGG------CGGTG------------------GTGGTGGCAAAGTTAAAGAG---------------G---AT
dm3	chr3L:14060050-14060199 -		GTCGA-----------------------GGCTAGGCTGC------CGCTCGGACTGCCCAGCGGACTGAAGCCCG-------------------------------------GC---GGTGGTGGTGGAGCCGGTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGAG-CAGCTGAACTT---GC---------------AGTAGGCGAGGCGGGCATTGGCGG------CGGAG------------------GTGGTGGCAATGTT---------------------------
droSim2	3l:13732824-13732982 -		GTCGA-----------------------GGCTAGGCTGC------CGCTCGGACTGCCCAGCGGACTGAAGCCCGGCATCAT---TG-------------------------GC---GGTGGTGGTGGAGCCGGTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGAG-CAGCTGAACTT---GC---------------AGTAGGCGAGGCGGGCATTGGCGG------CGGAG------------------GTGGTGGCAATGTT---------------------------
droSec2	scaffold_0:6207804-6207962 -		GTCGA-----------------------GGCTAGGCTGC------CGCTCGGACTGCCCAGCGGACTGAAGCCCGGCATCAT---TG-------------------------GC---GGTGGTGGTGGAGCCGGTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGAG-CAGCTGAACTT---GC---------------AGTAGGCGAGGCGGGTATTGGCGT------CGGAG------------------GTGGTGGCAATGTT---------------------------
droYak3	3R:26604301-26604435 -		GCAAATTGCGTCCGACAGTCAACAATGGGAAT-----------------------------------------AGGTGGTGC---TG-------------------------AT---GGTGGTGGTGGTGCTGGTG------------GTGGTGGTGCTG---ATG------GTG---GTG---------GTGCTGATGGTG------GTG---GT----------------------------------G------CTGG------TGGTGGTGG------TGCTG------------------GTGGTGGTGGTGCT---------------------------
droEre2	scaffold_4690:9062531-9062651 +		AGA-------------------------ATCCCAATGGT------AATCCCAG--------------------TGGCAGCGG---TG-------------------------GA---GGAGGAAATGGCGGTGGTG------------------------------------GCA---------------------ATGGCG------GAGGAGGC----GG---C------GG---TGGTGGTGGAGGAG---GAGGTGGAGG------CTCCAC------CAGTA------------------GCCGGAGCAA-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GAAGA-----------------------ATTTAACTGGC------AGCTCATC--------------------CGGCAGCAT---TG-------------------------AT---GGCGGCAATGGAGGTGTTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGTA-GTGGTGGTGGT---GG---------------AGGAGGTGGAATGAACAATTGCAG------CGGTG------------------GCGGTGGCAATGCTCAAACG---------------AATAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................................................................................................................G------CGGTG------------------GCGGTGGCAATG.............................	18	6	0.17	1	1	0

droVir3

ACCGG-----------------------CAGCA----CACGTCCCAGTCAACG--------------------TGGCGGCAA---TC-------------------------GC---GGCGGAGGCGGCGGCGGCG---------------GCGGTG---------------GTG------CTGG---------------AGGTG---------GC----GG---C------GGTGGTGGATT---CGGTG---GTGGCGGCGG------CGGCAA------CGGTG------------------GCCGCGGCAATGAT--------------------------C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................GCA----CACGTCCCAGTCAAC......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGCA----CACGTCCCAGTCAAC......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GGTGGATT---CGGTG---GTGGCGGCGG------C...........................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GGTGGTGGATT---CGGTG---GT..........................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GCGGAGGCGGCGGCGGCG---------------GC.................................................................................................................................................................................................	20	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GAAGA-----------------------ACCTAACGGGC------AGCTCGTC--------------------CAACAGCAT---TG-------------------------AT---GCCGGTGGTGCTGGTGGTG------------------------------------GTGGTGGCGGCAGCG---------------GCGGTG------GCGGT-GG---C------GG---TGGCAATGGCAACT------------------------------------------------------GTGGTGGCAATGGTCAAACGCTTGGCTGCAACTCCAACAAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...GA-----------------------ACCTAACGGGC------AGCTCGTC--------------------.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................G-------------------------AT---GCCGGTGGTGCTGGTGGT...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................GGTGGTG------------------------------------GTGGTGGCGGC...................................................................................................................................................................	18	20	0.15	3	2	0	0	0	0	1
................................................................................................................................TGGTGGTG------------------------------------GTGGTGGCGGC...................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	1

droWil2

GGAGG-----------------------TGGTG----GT------GGGTTG-----------------TTGCATGGCGGAGG---CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------GAGGTG-GTGGT------------GGTGGTGGAGGTGGTGGTGGTGTTGT------TCATGG------CGGAG------------------GCGGTGG----------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................GTG-GTGGT------------GGTGGTGGAGGTGGTGG...........................................................................................	25	4	5.25	21	0	1	5	1	14
..............................................................................GAGG---CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------..............................................................................................................................................................................	27	1	4.00	4	0	0	4	0	0
............................................................................................................................GAGGAGGTGGAG------------------------------------GTGGTGGTGGAGGA................................................................................................................................................................	26	1	3.00	3	0	1	2	0	0
..............................................................................GAGG---CG-------------------------GT---GGTGGAGGAGGAGGTGGA...................................................................................................................................................................................................................	26	1	3.00	3	0	1	2	0	0
.....................................................................................................................................GAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------G...................................................................................................................................	25	2	2.50	5	0	2	1	0	2
.............................................................................................................................................................................................................................GTGGT------------GGTGGTGGAGGTGGTGGTGG........................................................................................	25	4	2.25	9	0	0	3	1	5
................................................................................................................GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTG...........................................................................................................................................................................	24	3	2.00	6	0	1	0	0	5
............................................................................................................................GAGGAGGTGGAG------------------------------------GTGGTGGTGGAGG.................................................................................................................................................................	25	1	2.00	2	0	0	1	0	1
...............................................................................................................................................................................GTGGTGGAGGAG---------------GAGGTG------GAGGTG-.............................................................................................................................	24	3	2.00	6	0	1	0	0	5
...........................................................................GCGGAGG---CG-------------------------GT---GGTGGAGGAGGAGGTG.....................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0
.................................................................................................................................................................................GGTGGAGGAG---------------GAGGTG------GAGGTG-GTG..........................................................................................................................	25	3	1.67	5	0	1	2	0	2
...............................................................................................................................................................................GTGGTGGAGGAG---------------GAGGTG------GAGGTG-GTG..........................................................................................................................	27	3	1.67	5	0	0	5	0	0
.....................................................................................................................GGTGGAGGAGGAGGTGGAG------------------------------------GTGGTG........................................................................................................................................................................	25	3	1.67	5	0	1	2	0	2
................................................................................................................GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGGTG........................................................................................................................................................................	27	3	1.67	5	0	0	5	0	0
........................................................................................................................................................................................GAG---------------GAGGTG------GAGGTG-GTGGT------------GGTGGT......................................................................................................	26	2	1.50	3	0	1	2	0	0
.....................................................................................................................................GAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------GA..................................................................................................................................	26	2	1.50	3	0	0	3	0	0
.....................................................................................................................GGTGGAGGAGGAGGTGGAG------------------------------------GTGGT.........................................................................................................................................................................	24	3	1.33	4	0	0	3	0	1
......................................................................................................................GTGGAGGAGGAGGTGGAG------------------------------------GTGGTGGT......................................................................................................................................................................	26	3	1.33	4	0	0	4	0	0
..................................................................................................................................................................................GTGGAGGAG---------------GAGGTG------GAGGTG-GTGGT------------............................................................................................................	26	3	1.33	4	0	0	4	0	0
...............................................................................................................................................................................GTGGTGGAGGAG---------------GAGGTG------GAGGTG-G............................................................................................................................	25	3	1.33	4	0	0	3	0	1
.................................................................................................................................................................................GGTGGAGGAG---------------GAGGTG------GAGGTG-GT...........................................................................................................................	24	3	1.33	4	0	0	3	0	1
................................................................................................................GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGGT.........................................................................................................................................................................	26	3	1.33	4	0	1	2	0	1
......................................................................................................................................................................................................................GAGGTG-GTGGT------------GGTGGTGGAGGTGG..............................................................................................	25	3	1.33	4	0	2	1	0	1
................................................................................................................GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGG..........................................................................................................................................................................	25	3	1.33	4	0	0	3	0	1
...............................................................................................................................................................................GTGGTGGAGGAG---------------GAGGTG------GAGGTG-GT...........................................................................................................................	26	3	1.33	4	0	1	2	0	1
.........................................................................................................................GAGGAGGAGGTGGAG------------------------------------GTGGTGGTGGA...................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................GTG------GAGGTG-GTGGT------------GGTGGTGGAGG.................................................................................................	25	3	1.00	3	0	0	1	0	2
..........................................................................................................................................................................................................GAGGTG------GAGGTG-GTGGT------------GGTGGTGG....................................................................................................	25	2	1.00	2	0	0	1	0	1
...GG-----------------------TGGTG----GT------GGGTTG-----------------TTGCATGG..............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..............................................................................GAGG---CG-------------------------GT---GGTGGAGGAGGAGGTGG....................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.........................................................................TGGCGGAGG---CG-------------------------GT---GGTGGAGGAGGAG........................................................................................................................................................................................................................	26	2	1.00	2	0	1	1	0	0
..........................................................................GGCGGAGG---CG-------------------------GT---GGTGGAGGAGGA.........................................................................................................................................................................................................................	24	2	1.00	2	0	2	0	0	0
.....................................................................................CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTG...........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
................................................................................GG---CG-------------------------GT---GGTGGAGGAGGAGGTGGA...................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................AG---------------GAGGTG------GAGGTG-GTGGT------------GGTGGT......................................................................................................	25	2	1.00	2	0	0	2	0	0
..........................................................................................................................................................................................................GAGGTG------GAGGTG-GTGGT------------GGTGGTGGA...................................................................................................	26	2	1.00	2	0	0	1	0	1
...............................................................................AGG---CG-------------------------GT---GGTGGAGGAGGAGGTGG....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
............................................................................................................................................................................GTGGTGGTGGAGGAG---------------GAGGTG------GAGGTG-G............................................................................................................................	28	2	1.00	2	0	0	2	0	0
............................................................................................................................................................................GTGGTGGTGGAGGAG---------------GAGGTG------GAGG................................................................................................................................	25	2	1.00	2	0	0	2	0	0
......................................................................................................................................................................................................................GAGGTG-GTGGT------------GGTGGTGGAGGTG...............................................................................................	24	3	1.00	3	0	0	0	0	3
......................................................................................................................................AG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------GAG.................................................................................................................................	26	2	1.00	2	0	0	2	0	0
............................................................................................................................GAGGAGGTGGAG------------------------------------GTGGTGGTGGA...................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.....................................................................TGCATGGCGGAGG---CG-------------------------GT---GGTGG................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
......................................................................................................................................................................................................................GAGGTG-GTGGT------------GGTGGTGGAGGTGGT.............................................................................................	26	2	1.00	2	0	1	1	0	0
.............................................................................................................................AGGAGGTGGAG------------------------------------GTGGTGGTGGAGGAG---------------................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.................................................................................G---CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGG..........................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.....................................................................TGCATGGCGGAGG---CG-------------------------GT---GGT..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................................GAG---------------GAGGTG------GAGGTG-GTGGT------------GGTGG.......................................................................................................	25	2	1.00	2	0	0	2	0	0
.................................................................................G---CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------G.............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............................................................................................................................GAGGAGGTGGAG------------------------------------GTGGTGGTGGAGGAG---------------................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...............................................................................AGG---CG-------------------------GT---GGTGGAGGAGGAGGTGA....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
....................................................................................................................................GGAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------....................................................................................................................................	25	2	1.00	2	0	1	0	0	1
...........................................................................................................................................................................................................................G-GTGGT------------GGTGGTGGAGGTGGTGGT..........................................................................................	24	4	1.00	4	0	0	0	0	4
.....................................................................................CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGG..........................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................GTG-GTGGT------------GGTGGTGGAGGTGGTGGT..........................................................................................	26	3	0.67	2	0	0	1	0	1
..................................................................................................................................................................................GTGGAGGAG---------------GAGGTG------GAGGTG-GT...........................................................................................................................	23	3	0.67	2	0	1	0	0	1
..............................................................................................................................................................................GGTGGTGGAGGAG---------------GAGGTG------GAGGTG-.............................................................................................................................	25	3	0.67	2	0	0	2	0	0
..................................................................................................................................GTGGAG------------------------------------GTGGTGGTGGAGGAG---------------GAGG............................................................................................................................................	25	3	0.67	2	0	0	2	0	0
.........................................................................................................................................................................................................................GTG-GTGGT------------GGTGGTGGAGGTGGTGGTG.........................................................................................	27	3	0.67	2	0	0	2	0	0
......................................................................................G-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTG...........................................................................................................................................................................	25	3	0.67	2	0	0	2	0	0
......................................................................................................................GTGGAGGAGGAGGTGGAG------------------------------------GTGGT.........................................................................................................................................................................	23	3	0.67	2	0	1	0	0	1
...............................................................................................................................................................................................................................GGT------------GGTGGTGGAGGTGGTGGTGG........................................................................................	23	5	0.60	3	0	1	1	0	1
...........................................................................................................................................................................................................................G-GTGGT------------GGTGGTGGAGGTGGTGG...........................................................................................	23	7	0.57	4	0	0	0	0	4
...........................................................................GCGGAGG---CG-------------------------GT---GGTGGAGGAGGAG........................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0
...................................................................................................................................TGGAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------....................................................................................................................................	26	2	0.50	1	0	0	1	0	0
...................................................................................................................................TGGAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGT...........................................................................................................................................	25	2	0.50	1	0	0	1	0	0
..................................................................................................................................GTGGAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------....................................................................................................................................	27	2	0.50	1	0	0	1	0	0
.................................................................................................................................................................................GGTGGAGGAG---------------GAGGTG------GAGGTG-G............................................................................................................................	23	4	0.50	2	0	0	2	0	0
..........................................................................................................................................................................................G---------------GAGGTG------GAGGTG-GTGGT------------GGT.........................................................................................................	21	2	0.50	1	0	0	0	0	1
..............................................................................................................................GGAGGTGGAG------------------------------------GTGGTGGTGGAGGA................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0
...........................................................................................................................................................................................................AGGTG------GAGGTG-GTGGT------------GGTGGTGGAG..................................................................................................	26	2	0.50	1	0	0	1	0	0
.............................................................................................................................................................................TGGTGGTGGAGGAG---------------GAGGTG------GAGG................................................................................................................................	24	2	0.50	1	0	0	0	0	1
........................................................................ATGGCGGAGG---CG-------------------------GT---GGTGGAGGAGGA.........................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0
........................................................................ATGGCGGAGG---CG-------------------------GT---GGTGGAGGAGGAG........................................................................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0
.................................................................................G---CG-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTA...........................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0
.....................................................................................................................................GAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------GAG.................................................................................................................................	27	2	0.50	1	0	0	1	0	0
...............................................................................................................................................................................................................G------GAGGTG-GTGGT------------GGTGGTGGAGG.................................................................................................	23	4	0.50	2	0	2	0	0	0
............................................................................CGGAGG---CG-------------------------GT---GGTGGAGGAGGAGG.......................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0
.......................................................................................................................................................................................................................AGGTG-GTGGT------------GGTGGTGGAGGTGGTG............................................................................................	26	2	0.50	1	0	0	1	0	0
.............................................................................................................................................................................................................................GTGGT------------GGTGGTGGAGGTGGTGGTG.........................................................................................	24	4	0.50	2	0	0	0	0	2
........................................................................ATGGCGGAGG---CG-------------------------GT---GGTGGAGGAGG..........................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0
..........................................................................................................................................................................................................GAGGTG------GAGGTG-GTGGT------------GGTGGT......................................................................................................	23	2	0.50	1	0	1	0	0	0
...........................................................................GCGGAGG---CG-------------------------GT---GGTGGAGGAGGAGG.......................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	1
.....................................................................................................................................GAG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------....................................................................................................................................	24	2	0.50	1	0	0	1	0	0
...............................................................................................................................GAGGTGGAG------------------------------------GTGGTGGTGGAGGAG---------------GA..............................................................................................................................................	26	2	0.50	1	0	1	0	0	0
.....................................................................................................................GGTGGAGGAGGAGGTGGAG------------------------------------GTGG..........................................................................................................................................................................	23	4	0.50	2	0	0	2	0	0
.........................................................................................................................................................................................AG---------------GAGGTG------GAGGTG-GTGGT------------GGT.........................................................................................................	22	2	0.50	1	0	0	1	0	0
...............................................................................................................................GAGGTGGAG------------------------------------GTGGTGGTGG....................................................................................................................................................................	19	5	0.40	2	0	0	1	0	1
..........................................................................................................................................................................................................GAGGTG------GAGGTG-GTGGT------------GG..........................................................................................................	19	5	0.40	2	0	0	1	0	1
...........................................................................................................................GGAGGAGGTGGAG------------------------------------GTGGTGGTGG....................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0
......................................................................................G-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGGT.........................................................................................................................................................................	27	3	0.33	1	0	0	1	0	0
.............................................................................................................................................................................................................GTG------GAGGTG-GTGGT------------GGTGGTGGAG..................................................................................................	24	3	0.33	1	0	1	0	0	0
.........................................................................................................................GAGGAGGAGGTGGAG------------------------------------GTGGTGGTG.....................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0
........................................................................................................................................................................................GAG---------------GAGGTG------GAGGTG-GTGGT------------GG..........................................................................................................	22	3	0.33	1	0	1	0	0	0
.................................................................................................................T---GGTGGAGGAGGAGGTGGAG------------------------------------GTGGT.........................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0
.......................................................................................................................................G------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------GA..................................................................................................................................	24	3	0.33	1	0	1	0	0	0
..........................................................................................................................................................................................................................TG-GTGGT------------GGTGGTGGAGGTGGTGGT..........................................................................................	25	3	0.33	1	0	0	0	0	1
....................................................................................................................................................................................GGAGGAG---------------GAGGTG------GAGGTG-GTGGT------------............................................................................................................	24	3	0.33	1	0	1	0	0	0
.........................................................................................................................GAGGAGGAGGTGGAG------------------------------------GTGGTGGTGG....................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0
......................................................................................................................GTGGAGGAGGAGGTGGAG------------------------------------GTGGTGGTG.....................................................................................................................................................................	27	3	0.33	1	0	0	1	0	0
............................................................................CGGAGG---CG-------------------------GT---GGTGGAGGA............................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0
..........................................................................GGCGGAGG---CG-------------------------GT---GGTGGAGGAGG..........................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	1
.................................................................................................................T---GGTGGAGGAGGAGGTGGAG------------------------------------GTGGTG........................................................................................................................................................................	26	3	0.33	1	0	0	0	1	0
..................................................................................................................................................................................GTGGAGGAG---------------GAGGTG------GAGGTG-GTGGT------------G...........................................................................................................	27	3	0.33	1	0	0	1	0	0
......................................................................................................................................AG------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------G...................................................................................................................................	24	3	0.33	1	0	0	1	0	0
................................................................................................................................................................................TGGTGGAGGAG---------------GAGGTG------GAGGTG-GT...........................................................................................................................	25	3	0.33	1	0	1	0	0	0
..................................................................................................................................GTGGAG------------------------------------GTGGTGGTGGAGGAG---------------GAG.............................................................................................................................................	24	3	0.33	1	0	1	0	0	0
............................................................................................................................................................................................................GGTG------GAGGTG-GTGGT------------GGTGGTGGA...................................................................................................	24	3	0.33	1	0	0	1	0	0
.................................................................................................................................GGTGGAG------------------------------------GTGGTGGTGGAGGAG---------------GA..............................................................................................................................................	24	3	0.33	1	0	1	0	0	0
............................................................................................................................................................................GTGGTGGTGGAGGAG---------------GAGGTG------GA..................................................................................................................................	23	3	0.33	1	0	1	0	0	0
................................................................................................................................................................................TGGTGGAGGAG---------------GAGGTG------GAGGTG-G............................................................................................................................	24	3	0.33	1	0	0	0	0	1
............................................................................................................................GAGGAGGTGGAG------------------------------------GTGGTGGTGG....................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0
.........................................................................................................................................................................................................................GTG-GTGGT------------GGTGGTGGAGGTGGTG............................................................................................	24	6	0.33	2	0	0	0	0	2
.......................................................................................................................................................................................GGAG---------------GAGGTG------GAGGTG-GTGGT------------GG..........................................................................................................	23	3	0.33	1	0	1	0	0	0
......................................................................................................................GTGGAGGAGGAGGTGGAG------------------------------------GTGGTGG.......................................................................................................................................................................	25	3	0.33	1	0	0	1	0	0
.....................................................................................................................................................................................GAGGAG---------------GAGGTG------GAGGTG-GTGGT------------GG..........................................................................................................	25	3	0.33	1	0	1	0	0	0
........................................................................................................................GGAGGAGGAGGTGGAG------------------------------------GTGGTGGT......................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0
.....................................................................................................................................................................................GAGGAG---------------GAGGTG------GAGGTG-GTGGT------------G...........................................................................................................	24	3	0.33	1	0	1	0	0	0
..................................................................................................................................................................................GTGGAGGAG---------------GAGGTG------GAGGTG-GTGG.........................................................................................................................	25	3	0.33	1	0	0	1	0	0
..............................................................................................................................................................................GGTGGTGGAGGAG---------------GAGGTG------GAGGTG-GT...........................................................................................................................	27	3	0.33	1	0	0	1	0	0
..............................................................................................................................................................................GGTGGTGGAGGAG---------------GAGGTG------GAGGTG-A............................................................................................................................	26	3	0.33	1	0	0	1	0	0
.................................................................................................................................GGTGGAG------------------------------------GTGGTGGTGGAGGA................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0
........................................................................................................................................................................................GAG---------------GAGGTG------GAGGTG-GTGGT------------GGTGGTA.....................................................................................................	27	3	0.33	1	0	0	1	0	0
................................................................................................................................................................................TGGTGGAGGAG---------------GAGGTG------GAGGTG-GTG..........................................................................................................................	26	3	0.33	1	0	0	0	1	0
.............................................................................................................................................................................................................GTG------GAGGTG-GTGGT------------GGTGGTGGAGGTG...............................................................................................	27	3	0.33	1	0	0	1	0	0
.................................................................................................................T---GGTGGAGGAGGAGGTGGAG------------------------------------GTGG..........................................................................................................................................................................	24	3	0.33	1	0	0	0	0	1
.............................................................................................................................................................................................................GTG------GAGGTG-GTGGT------------GGTGGTGGAGGT................................................................................................	26	3	0.33	1	0	0	1	0	0
......................................................................................G-------------------------GT---GGTGGAGGAGGAGGTGGAG------------------------------------GTGA..........................................................................................................................................................................	26	3	0.33	1	0	0	1	0	0
................................................................................................................GT---GGTGGAGGAGGAGGTGGA...................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0
......................................................................................G-------------------------GT---GGTGGAGGAGGAGGT......................................................................................................................................................................................................................	18	8	0.25	2	0	0	2	0	0
........................................................................................................................................................................................................................GGTG-GTGGT------------GGTGGTGGAGGTGGTGG...........................................................................................	26	4	0.25	1	0	0	0	1	0
.................................................................................................................................................................................GGTGGAGGAG---------------GAGGTG------GAGGTG-GTA..........................................................................................................................	25	4	0.25	1	0	0	1	0	0
..................................................................................................................................................................................GTGGAGGAG---------------GAGGTG------GAGGTG-G............................................................................................................................	22	4	0.25	1	0	1	0	0	0
..............................................................................................................................................................................GGTGGTGGAGGAG---------------GAGGT...........................................................................................................................................	18	8	0.25	2	0	0	2	0	0
...............................................................................................................................................................................GTGGTGGAGGAG---------------GAGGTG------GA..................................................................................................................................	20	4	0.25	1	0	0	1	0	0
.....................................................................................................................GGTGGAGGAGGAGGTGGAG------------------------------------GTGGTA........................................................................................................................................................................	25	4	0.25	1	0	0	1	0	0
..............................................................................................................................................................................................................................TGGT------------GGTGGTGGAGGTGGTGGTG.........................................................................................	23	4	0.25	1	0	0	0	0	1
......................................................................................................................GTGGAGGAGGAGGTGGAG------------------------------------GTGG..........................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0
...........................................................................................................................................................................................................................G-GTGGT------------GGTGGTGGAGGTGGTGGTG.........................................................................................	25	4	0.25	1	0	0	0	0	1
..............................................................................................................................................................................................................................................GGTGGTGGAGGTGGTGGT..........................................................................................	18	15	0.20	3	0	1	1	0	1
.................................................................................................................................................................................................................................T------------GGTGGTGGAGGTGGTGGTGG........................................................................................	21	6	0.17	1	0	0	0	0	1
...............................................................................................................................................................................................................................GGT------------GGTGGTGGAGGTGGTGGT..........................................................................................	21	6	0.17	1	0	0	0	0	1
..................................................................................................................................GTGGAG------------------------------------GTGGTGGTGGAG..................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0
..........................................................................................................................................................................................................................TG-GTGGT------------GGTGGTGGAGGTGGTG............................................................................................	23	6	0.17	1	0	1	0	0	0
.......................................................................................................................................G------------------------------------GTGGTGGTGGAGGAG---------------GAGGTG------G...................................................................................................................................	23	6	0.17	1	0	0	0	0	1
............................................................................................................................................................................GTGGTGGTGGAGGAG---------------GAGGTG------G...................................................................................................................................	22	6	0.17	1	0	0	1	0	0
...........................................................................................................................................................................................................................G-GTGGT------------GGTGGTGGAGGTGGTGGTA.........................................................................................	25	14	0.14	2	0	0	0	0	2
............................................................................................................................................................................................................GGTG------GAGGTG-GTGGT------------GGTGGTGG....................................................................................................	23	7	0.14	1	0	0	0	0	1
............................................................................................................................................................................GTGGTGGTGGAGGAG---------------GAGG............................................................................................................................................	19	16	0.13	2	0	0	0	0	2
........................................................................................................................................................................................................................GGTG-GTGGT------------GGTGGTGGAGGTGGT.............................................................................................	24	8	0.13	1	0	0	1	0	0
.....................................................................................................................................GAG------------------------------------GTGGTGGTGGAGGAG---------------GA..............................................................................................................................................	20	8	0.13	1	0	0	1	0	0
.............................................................................................................................................................................................................GTG------GAGGTG-GTGGT------------GGTGGTGG....................................................................................................	22	8	0.13	1	0	1	0	0	0
.................................................................................................................................................................................................................................T------------GGTGGTGGAGGTGGTGGTG.........................................................................................	20	9	0.11	1	0	1	0	0	0
............................................................................................................................................................................................................GGTG------GAGGTG-GTGGT------------GGTGGTG.....................................................................................................	22	10	0.10	1	0	0	0	0	1
.................................................................................................................................................................................................................................T------------GGTGGTGGAGGTGGTGGT..........................................................................................	19	10	0.10	1	0	0	0	0	1
........................................................................................................................................................................................................................GGTG-GTGGT------------GGTGGTGGAGGTGG..............................................................................................	23	11	0.09	1	0	0	0	0	1
.............................................................................................................................................................................................................................GTGGT------------GGTGGTGGAGGTGGTGGTGGA.......................................................................................	26	11	0.09	1	0	0	1	0	0
.........................................................................................................................................................................................................................GTG-GTGGT------------GGTGGTGGAGGTGG..............................................................................................	22	11	0.09	1	0	1	0	0	0
...............................................................................................................................................................................................................................GGT------------GGTGGTGGAGGTGGTGGTGGTT......................................................................................	25	12	0.08	1	0	0	0	0	1
...............................................................................................................................................................................................................................GGT------------GGTGGTGGAGGTGGTGG...........................................................................................	20	12	0.08	1	0	0	0	0	1
.........................................................................................................................................................................................................................GTG-GTGGT------------GGTGGTGGAGGTGGTGA...........................................................................................	25	12	0.08	1	0	0	0	0	1
.....................................................................................................................GGTGGAGGAGGAGGTGGA...................................................................................................................................................................................................................	18	14	0.07	1	0	0	1	0	0
.................................................................................................................................................................................GGTGGAGGAG---------------GAGGTG------GA..................................................................................................................................	18	14	0.07	1	0	0	1	0	0
..........................................................................................................................................................................................................................TG-GTGGT------------GGTGGTGGAGGTG...............................................................................................	20	17	0.06	1	0	0	0	0	1
............................................................................................................................................................................................................GGTG------GAGGTG-GTGGT------------GGT.........................................................................................................	18	18	0.06	1	0	0	1	0	0
....................................................................................................................................................................................GGAGGAG---------------GAGGTG------GAGGT...............................................................................................................................	18	18	0.06	1	0	1	0	0	0
.................................................................................................................................................................................................................................................GGTGGAGGTGGTGGTGGT.......................................................................................	18	18	0.06	1	0	0	1	0	0
........................................................................................................................GGAGGAGGAGGTGGAG------------------------------------GT............................................................................................................................................................................	18	18	0.06	1	0	1	0	0	0
...........................................................................................................................................................................................................................G-GTGGT------------GGTGGTGGAGGTG...............................................................................................	19	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................G-GTGGT------------GGTGGTGGAGGT................................................................................................	18	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................GGTG-GTGGT------------GGTGGTGGAG..................................................................................................	19	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................G------GAGGTG-GTGGT------------GGTGGT......................................................................................................	18	20	0.05	1	0	1	0	0	0
.......................................................................................................................................G------------------------------------GTGGTGGTGGAGGAG---------------GAG.............................................................................................................................................	19	20	0.05	1	0	0	0	0	1

dp5

GAAGA-----------------------ACATTGGTGGC------AGTTCGTC--------------------CGGCAGCAT---TG-------------------------AT---GGGGGAGGAGAACGCGAAC------------------GCG---GTTTCG------GTG------G------TGGTGCCAATGGAG------GAG---GC----GG---T------GG---CGGCGGCGGCGGTG---GTGGCGGCAT------GCCCAA------CAATT------------------GCAATTCAAACAA---------------------------T	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................GGTGCCAATGGAG------GAG---GC----GG---T------GG---C............................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................GAAC------------------GCG---GTTTCG------GTG------G------TGGTGCCAATG...................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................TCGTC--------------------CGGCAGCAT---TG-------------------------AT---G....................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................G---T------GG---CGGCGGCGGCGGTG---GTGGCG......................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................GCG---GTTTCG------GTG------G------TGGTGCC.......................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATGGAG------GAG---GC----GG---T------GG---CGGCGG.......................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................AGAACGCGAAC------------------GCG---GTTTCG------GTG------G------T.............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................G------GAG---GC----GG---T------GG---CGGCGGCGGC...................................................................................................	21	6	0.33	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GG---CGGCGGCGGCGGTG---GTGGCGG.....................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CGGCGGCGGCGGTG---GTGG........................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GCGGCGGCGGTG---GTGGCGG.....................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................G---GC----GG---T------GG---CGGCGGCGGC...................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GAAGA-----------------------ACATTGGTGGC------AGTTCGTC--------------------CGGCAGCAT---TG-------------------------AT---GGGGGAGGAGAACGCGAAC------------------GCG---GTTTCG------GTG------G------TGGTGCCAATGGAG------GAGGCGGT----GG---C------GG---TGGCGGCGGCGGCGGTGGTGGCGGCAT------GCCCAA------CAATT------------------GCAATTCAAACAA---------------------------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................AGCAT---TG-------------------------AT---GGGGGAGGAGAAC........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................AT---TG-------------------------AT---GGGGGAGGAGAACGCGAAC------------------GCG---..........................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................G-------------------------AT---GGGGGAGGAGAACGCGAAC------------------GC..............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GGCGGT----GG---C------GG---TGGCGGCGGC...................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

GCAGA-----------------------GCATGAGCGGC------AGATACCG--------------------TGGTGGTGC---TG-------------------------GA---GGCCGGTATGGTGGTGGTG---------GCGGCGGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGGTGGTGG------CTACGG------CGGTG------------------GTGGTGGCGGTG-----------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................GG---TGGTGGTGGAG------GAGGTGGTGG------C...........................................................................	24	1	11.00	11	0	0	0	0	0	11
..................................................................................................................................................................................GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGG........................................................................................	22	1	3.00	3	0	0	0	0	0	3
........................................................................................................................................................................................................................................GG---TGGTGGTGGAG------GAGGTGGTGG------CTA.........................................................................	26	1	3.00	3	0	0	0	0	0	3
......................................................................................................................................................................GAG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGGT.......................................................................................	26	1	3.00	3	0	0	0	0	0	3
..........................................................................................................................................................GAGGAG---GAGGAG---------GTG----------------------------------------G---C------GG---TGGTGG.......................................................................................................	25	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................GCGGCGGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---.........................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................G---C------GG---TGGTGGTGGAG------GAGGTGGTGG------............................................................................	25	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................GCGGCGGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---C------..................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
............................................................................................................................ATGGTGGTGGTG---------GCGGCGGCG................................................................................................................................................................................................	21	2	1.50	3	1	0	0	0	0	2
.............................................................................................................................................................................................................................G---C------GG---TGGTGGTGGAG------GAGGTGGTG...................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................AG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGGT.......................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................GCGGAGGAG---GAGGAG---------GTG----------------------------------------G---C------..................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................GAG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAG.........................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGGTGGT....................................................................................	26	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................G---C------GG---TGGTGGTGGAG------GAGGTGGT....................................................................................	23	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................G---GAGGAG---------GTG----------------------------------------G---C------GG---TGGTGGT......................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................G------GAGGTGGTGG------CTACGG------CGG.............................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................G---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGG........................................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................GG---TGGTGGTGGAG------GAGGTGGTGG------............................................................................	23	2	1.00	2	0	0	0	0	0	2
..................................................................................................................................................................................GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGGTGG.....................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................GAGGAG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------G...........................................................................................	25	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................GCGGCGGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---C------G.................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................GGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---C------GG---TG...........................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................TGGTG---------GCGGCGGCGGAGGAG---GAG....................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................GAGGAG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GA..........................................................................................	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................GG---TGGTGGTGGAG------GAGGTGGTGG------CT..........................................................................	25	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................GCGGCGGCGGAGGAG---GAGGAG---------GTG----------------------------------------.............................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................G--------------------TGGTGGTGC---TG-------------------------GA---GGCC.................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................G---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GA..........................................................................................	21	1	1.00	1	0	0	0	0	0	1
....A-----------------------GCATGAGCGGC------AGATACCG--------------------TGGTGGTG.........................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................GA---GGCCGGTATGGTGGTGGTG---------GCGGC....................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................TATGGTGGTGGTG---------GCGGC....................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................G---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------GAGGT.......................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................GGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---C------..................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................GAGGAG---GAGGAG---------GTG----------------------------------------G---C------GG---TG...........................................................................................................	21	2	1.00	2	0	0	0	0	0	2
.....................................................................................................................................................................GGAG---------GTG----------------------------------------G---C------GG---TGGTGGTGGAG------G...........................................................................................	23	1	1.00	1	1	0	0	0	0	0
....A-----------------------GCATGAGCGGC------AGATACCG--------------------TGGT.............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................GGTG---------GCGGCGGCGGAGGAG---GAGGAG---------........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................TGGTGGTGGAG------GAGGTGGTGG------C...........................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................GTG---------GCGGCGGCGGAGGAG---GAGGAG---------GTG----------------------------------------.............................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................C------GG---TGGTGGTGGAG------GAGGTGGTGG------C...........................................................................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................TGGTGGAG------GAGGTGGTGG------C...........................................................................	19	4	0.75	3	2	0	0	0	0	1
..................................................................................................................................................................................GTG----------------------------------------G---C------GG---TGGTGGTGGAG------............................................................................................	18	3	0.67	2	0	0	0	0	0	2
........................................................................................................................................................................................................................................GG---TGGTGGTGGAG------GAGGTGGTG...................................................................................	22	3	0.67	2	1	0	0	0	0	1
..................................................................................................................................GTGGTG---------GCGGCGGCGGAGGAG---.......................................................................................................................................................................................	21	3	0.67	2	1	0	0	0	0	1
.................................................................................................................................................................................................................................C------GG---TGGTGGTGGAG------GAGGTGG.....................................................................................	21	2	0.50	1	1	0	0	0	0	0
......................................................................................................................................TG---------GCGGCGGCGGAGGAG---GAGG...................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................................TG----------------------------------------G---C------GG---TGGTGGTGGAG------G...........................................................................................	18	2	0.50	1	1	0	0	0	0	0
............................................................................................................................ATGGTGGTGGTG---------GCGGCGGCGG...............................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1
............................................................................................................................................................GGAG---GAGGAG---------GTG----------------------------------------G---C------GG---T............................................................................................................	18	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................GGTGGAG------GAGGTGGTGG------C...........................................................................	18	8	0.38	3	0	0	0	0	0	3
..............................................................................................................................................................................................................................................GGTGGTGGAG------GAGGTGGTGG------C...........................................................................	21	3	0.33	1	0	0	0	0	0	1
...................................................................................................................................TGGTG---------GCGGCGGCGGAGGA...........................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	1	0
.....................................................................................................................................GTG---------GCGGCGGCGGAGGAG---G......................................................................................................................................................................................	19	9	0.33	3	0	0	0	0	0	3
......................................................................................................................................................GGCGGAGGAG---GAGGAG---------GT......................................................................................................................................................................	18	6	0.33	2	1	0	0	0	1	0
...............................................................................................................................................................................................................................................GTGGTGGAG------GAGGTGGTGG------C...........................................................................	20	4	0.25	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................GGTGGTGGAG------GAGGTGGTGG------............................................................................	20	5	0.20	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................GG---TGGTGGTGGAG------GAGGTGGT....................................................................................	21	5	0.20	1	0	0	0	0	0	1
............................................................................................................................ATGGTGGTGGTG---------GCGGCG...................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	1
.................................................................................................................................GGTGGTG---------GCGGCGGCGGAGG............................................................................................................................................................................................	20	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................GGTGGTGGTG---------GCGGCGGC.................................................................................................................................................................................................	18	16	0.13	2	0	0	0	0	0	2
....................................................................................................................................GGTG---------GCGGCGGCGGAGGA...........................................................................................................................................................................................	18	9	0.11	1	1	0	0	0	0	0
.........................................................................................................................................................GGAGGAG---GAGGAG---------GTG----------------------------------------G---C------G.................................................................................................................	19	9	0.11	1	1	0	0	0	0	0
..............................................................................................................................GGTGGTGGTG---------GCGGCGGCG................................................................................................................................................................................................	19	11	0.09	1	1	0	0	0	0	0
...................................................................................................................................................GGCGGCGGAGGAG---GAGGAG---------G.......................................................................................................................................................................	20	12	0.08	1	1	0	0	0	0	0
......................................................................................................................................................GGCGGAGGAG---GAGGAG---------GTG----------------------------------------G---G------..................................................................................................................	21	13	0.08	1	0	0	0	0	0	1
.......................................................................................................................................G---------GCGGCGGCGGAGGAG---GAGG...................................................................................................................................................................................	20	13	0.08	1	1	0	0	0	0	0
..................................................................................................................................................CGGCGGCGGAGGAG---GAGG...................................................................................................................................................................................	18	17	0.06	1	1	0	0	0	0	0

droBip1

CACGA-----------------------ATGTTACTGTA------AAGGCGTT--------------------GACCAACAC---TT-------CGGTGAAGAGCGAACCAGGTGTGGGCG---GCGGCGGCGGTGGTGGTGGAGGCGGCGGAGGGGGCG---GAGGAG---------GA----------------------------------------GG---C------GG---TGGCGGCGGCAACG------GTAGCGG------CAACAA------TAACG------------------GTGGTAACAACAA---------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAATC-----------------------AACTGGGTGGC------ATGGG--------------------CGTCGGCGTTGG---CG-------------------------GT---GTCGGTGTTGGAGGCGTTG------------------------------------GTGTTGGCGGCGTCG---------------GTGTTG------GAGGCG-TTGGCGGTGTT---GG---------------TGTCGGCCAGCTGGGTCCCGGCGG------CGTTG------------------GCGGTGGCAATCCT---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GATCA-----------------------GCACGAATG----------TCACTG--------------------TGAAGGCGCTGACCAACACATCGGTGAAGAGCGAACCAGGTGTGGGCG---GCGGCGGCGGCG------------------------------------GTG------------------------GCG------GAGGGGGC----GG---C------GG---TGGCGGCGGCAGCG---GCAGTGGCAA------CAACAA------CGGCGGTCCTGGCAACAACG---GTAACG------G---------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGG-------------------------------CAGT------GCTCTGGC--------------------TGGCGTTGG---AG-------------------------GT---GGCAGAGGTGGTGGCAGAG---------GTGGTGGTGGTGGTG---GTGGTG---------GTG----------------------------------------G---T------GG---TGGTGGTGGTG------GTGGTAGTGC------TTCTGG------TGCTG------------------GCGGTGGTGTAGCTCACTCG--------------------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAAGA-----------------------CTGT-GGTGGC------GGAGACTG--------------------CGGCGGCGG---CG-------------------------GT---GGCGGTGGCGGTGGCGGTG------------------------------------GCG---GTGGCGGTGGCG------------GTGGCG------GTGGCG-GT---------------GGCGGTGGCGGTG---GCGGCGGTGTTAA---CTGCGGAGACTGCTGCG------------------GCGGCGGCGATGACTGCT----------------------C	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGTGG-----------------------CTC-------------------------------------------------AT---TG-------------------------GA---CGACATGGTGGTGCTGCTG---------GTGCTGGTGCTGGAG---GTGGTGCTGGTG------CTGG------------TGCTGGTGGTG------GA------------------------------------------TGTGG-------TTCCTG------CGGTG------------GCGGTGGTGGTG-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAAGA-----------------------ATCTCGGTGGC------AGCTCATC--------------------AGGAAGCAT---TG-------------------------AT---TTAGGAGGCGGCGGCGGTG------------------------------------GAG------A---------------TAGAGGAGGGG------GA----AA---C------GG---TGGAAATGGCAACA---ACAACAACAT------GTCCAA------CAACG------------------GCCTGTCCAACAA---------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGACT-----------------------GCCCA---------------------------GCGGACTGAAGCCCGGCATCAT---TG-------------------------GC---GGTGGTGGCGGAGCCGGTG------------------------------------GTGCTGGTGGCGGAG---------------GCGGTG------GCGGGG-CAGCAGACATT---G------------------TCGGTGAGGCGGGCATTGGTGG------CGGTG------------------GTGGTGGCAAAGTTAAAGAG---------------G---AT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTCGA-----------------------GGCTAGGCTGC------CGCTCGGACTGCCCAGCGGACTGAAGCCCG-------------------------------------GC---GGTGGTGGTGGAGCCGGTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGAG-CAGCTGAACTT---GC---------------AGTAGGCGAGGCGGGCATTGGCGG------CGGAG------------------GTGGTGGCAATGTT---------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................GTGGAGCCGGTG------------------------------------GTGCTGGCG.....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGGCGGCGGAG---------------GTGGTG------GAT.................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TTGGCGG------CGGAG------------------GTGGTG...................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TTGGCGG------CGGAG------------------GTGGTGG..................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................G------GAGGAG-CAGCTGAACTT---AA---------------..............................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GGCGG------CGGAG------------------GTGGTGGC.................................	18	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................G---------------GTGGTG------GAGGAG-CAGCC........................................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TGGCGG------CGGAG------------------GTGGTGG..................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGGCGGCGGAG---------------GTGGTG------G...................................................................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GCGGCGGAG---------------GTGGTG------GATT................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GTCGA-----------------------GGCTAGGCTGC------CGCTCGGACTGCCCAGCGGACTGAAGCCCGGCATCAT---TG-------------------------GC---GGTGGTGGTGGAGCCGGTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGAG-CAGCTGAACTT---GC---------------AGTAGGCGAGGCGGGCATTGGCGG------CGGAG------------------GTGGTGGCAATGTT---------------------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

GTCGA-----------------------GGCTAGGCTGC------CGCTCGGACTGCCCAGCGGACTGAAGCCCGGCATCAT---TG-------------------------GC---GGTGGTGGTGGAGCCGGTG------------------------------------GTGCTGGCGGCGGAG---------------GTGGTG------GAGGAG-CAGCTGAACTT---GC---------------AGTAGGCGAGGCGGGTATTGGCGT------CGGAG------------------GTGGTGGCAATGTT---------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GCAAATTGCGTCCGACAGTCAACAATGGGAAT-----------------------------------------AGGTGGTGC---TG-------------------------AT---GGTGGTGGTGGTGCTGGTG------------GTGGTGGTGCTG---ATG------GTG---GTG---------GTGCTGATGGTG------GTG---GT----------------------------------G------CTGG------TGGTGGTGG------TGCTG------------------GTGGTGGTGGTGCT---------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................GTG------GTG---GT----------------------------------G------CTGG------TGGTGG.........................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................GTGGTGGTGCTGGTG------------GTGG..................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AGA-------------------------ATCCCAATGGT------AATCCCAG--------------------TGGCAGCGG---TG-------------------------GA---GGAGGAAATGGCGGTGGTG------------------------------------GCA---------------------ATGGCG------GAGGAGGC----GG---C------GG---TGGTGGTGGAGGAG---GAGGTGGAGG------CTCCAC------CAGTA------------------GCCGGAGCAA-------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................G---GAGGTGGAGG------CTCCAC------CAGTA------------------GCCG.....................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................A---GGAGGAAATGGCGGTGGTG------------------------------------GCA---------------------......................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GG---TGGTGGTGGAGGAG---GAGGTGGA....................................................................................	24	1	1.00	1	0	0	0	0	0	1	0

dgr_315

scaffold_15110:10608805-10608855 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads