dgr_31

CAGCAATGTATTAGGATATTTATTTTTTGTTAAGCAAATCTTCAGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTTATTTGACAAGCATTGCACTCTTCACGGCCGGATAAATGAGGGTCTATGTTAAACAAAATTAATAAAAGTGTTAAATTTGCAGT *********************************..(((((((....(((((((((((..((((.((((.(((.((....)).))).))))))))..)))))))))))....)))))))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
.......................................................................................CATTGCACTCTTCACGGCCGGA...................................................	22	0	1	81.00	81	71	10
.......................................................................................CATTGCACTCTTCACGGCCGG....................................................	21	0	1	29.00	29	25	4
.......................................................................................CATTGCACTCTTCACGGCCGGAA..................................................	23	1	1	7.00	7	5	2
.......................................................................................CATTGCACTCTTCACGGCCG.....................................................	20	0	1	7.00	7	5	2
.......................................................................................CATTGCACTCTTCACGGCCGGAT..................................................	23	0	1	4.00	4	3	1
........................................................................................ATTGCACTCTTCACGGCCGGA...................................................	21	0	1	4.00	4	4	0
.......................................................................................CATTGCACTCTTCACGGCCGGT...................................................	22	1	1	4.00	4	4	0
........................................................................................ATTGCACTCTTCACGGCCGG....................................................	20	0	1	3.00	3	3	0
..................................................CGGCTGTGGTTAGTGTCAATTCT.......................................................................................	23	0	1	2.00	2	2	0
.......................................................................................AATTGCACACTTCACGGCCGGA...................................................	22	2	1	2.00	2	2	0
.......................................................................................CATTGCACTCTTCACGGCCGGTT..................................................	23	1	1	2.00	2	2	0
.......................................................................................AATTGCACACTTCACGGCCGGAAA.................................................	24	3	1	2.00	2	2	0
.......................................................................................TATTGCACTTTTCACGGCTGGA...................................................	22	3	1	1.00	1	0	1
.......................................................................................CATTGCACTATTCACGGCCGGA...................................................	22	1	1	1.00	1	1	0
.........................................................................................TTGCACTCTTCACGGCCGGA...................................................	20	0	1	1.00	1	1	0
.......................................................................................CATTGCACTCTTCACGGCCGGATTC................................................	25	2	1	1.00	1	0	1
.......................................................................................TATTGCACTTTTCACGGCCGGAAA.................................................	24	3	1	1.00	1	1	0
.......................................................................................AATTGCACACTTCACGGCCGGAAAAA...............................................	26	3	1	1.00	1	1	0
........................................................................................ATTGCACACTTCACGGCCGGAAA.................................................	23	2	1	1.00	1	1	0
........................................................................................ATTGCACACTTCACGGCCGGAA..................................................	22	2	1	1.00	1	1	0
.......................................................................................CATTGCACTCTTCACGGCCGGAAA.................................................	24	1	1	1.00	1	1	0
.......................................................................................AATTGCACACTTCACGGCCGGAA..................................................	23	3	1	1.00	1	1	0
........................................................................................ATTGCACTCTTCACGGCCGGAT..................................................	22	0	1	1.00	1	1	0
.......................................................................................CATTGCACTCTTAACGGCCGGA...................................................	22	1	1	1.00	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15245:17564237-17564396 +	dgr_31	candidate-rescued	CAGCAATG-TATTAGGATATTTATTTT-------------------------------------------T--TGTTAAGCAAA-------------TC---TTC-AGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTTA--T---TTGACAAGCATTGCACTCTTCACGGCCGGATAAATGA-GGGTCTATG----T---------------------TAAACAA-------------AATT-----AATAA------------------------------AAGTGTTAA-ATTTGCAGT
droVir3	scaffold_12875:13669048-13669268 -	dvi-mir-313	Known_mirbase	CAGTAGTG-T--------ACTAATTTATTTTTCTACTAGTTCTGTGCTTGAATTATAGTGCAATTTTCTAT--TGTCAAAAGTA-------------TC---GCT-AGTTTTTCGGCTGTGGTCAGTGTCAATTCTTTTTTTTTATTTTTACAAGTATTGCACTTTTCACGGCCGGAAAAATTGAGATTC----CATTT---------------------AAAACACAAGATTGCGCACAATTCAAT----TAAT------ATGTGCAAGCTA-------------------TATTTTTCAGG
droMoj3	scaffold_6496:9090614-9090784 -	dmo-mir-313	Known_mirbase	TTGCAAATGCTTCG------------------------------------------AGTGAAACTTT---T--AGCCAAGCTTT-------------TTTGCATT-CGTTTTCCGGTTGTGAATTGTGTCAATTCTTTTTA--T---TTTACAAGTATTGCACTTTTCACGGCCGGAAAAAGGA-TAAAATA----TTT---------------------AACACGTCTTAATTCGCA------------------------------------GATATT--A-TAATGTGTA-GTCTGCAAT
droWil2	scf2_1100000004513:3453153-3453277 +	dwi_20	confident	AAT---------------------------------------------------------------------------------------------------------TTTTTAGGTTCGTTTAGTCTGCAAATTGTAATA--T---ACGAAAATAATTGCACACTTCACGGCCGGAAAAGTTC-AAGTTA----------------------------------------AACCGCAGAAATTTCCTCAAAAAATGTACTAA--------------------A-TG-----T-GACCAGAAA
droAna3	scaffold_13266:4132646-4132827 +	dan-mir-312	Known_mirbase	TAATAGTG-T----------TTGTGCT-------------------------------------------TTTTAAAAAAAACA-------------TC---TACA-ATTTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTTTT---TATACAAGTATTGCACTTGAGACGGCCGAAATATAGT-GGATCTAAGCGGCT---------------------ATAACCGAAAAGTTTTCAGGAGCTAAA----AAGT------GTTTAGAACTTCG----ATT--T--------T-ATTTGTAGG
droBip1	scf7180000396427:2575421-2575544 +			CAA---------------------------------------------------------------------------------------------------------------------------------ATCTTGGTTTTT---CCAACAAGAATTGCACTCGAGACGGCCAGAATATTGT-GGATCTATGCAGCT---------------------ACAAGCCGAAAGTGTTTAGAAGTTAGC----AAGT------GATTATGATTTCG----ATT--T--------T-ATTTGTAGG
droFic1	scf7180000454039:1776146-1776262 -			TAAGCAAG-----------------------------------------------------------------------------------------AC---CCA-AAATTCTGAGCCGTGGACAGTGATAATGCGATTT---T---TATTTGCGTATTGCACTGGTCCCGGCCTATAAAATTG-GCGTAG----------------------------------------AACGAC-------------------------------------GAAAA--GA-GTG-----T-TTTTTTATT
droRho1	scf7180000780104:82101-82165 -			-----------------------------------------------------------------------------------------------------------GTTTTTCGGACGGTATTTGTGACAATATGCTTAA--T---TTTAGACATATTGCACATTTACCGGCCTGA------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302291:2816214-2816362 +			TAGGCATA-----------------------------------------------------------------------------------------TT---TTT-GGCGTTTCGGTCCGTCCCAGGAGCAATCCTGTATT--T---CCGACTAGAATTGCACTTGAGACGGCCGGAGTGCTTG-AAAACAAG----------------------------------GAAAGTGCATAGAAACTAACTTAAAACTAGCAG------T-----------CG--A-CCAGCTT-TATTTTGCAGG
droTak1	scf7180000415401:99700-99823 -			A----------------------------------------------------------------------------------------------------------GTTTTTCGGACGGTGTCTGCGTCAATATTTCAGT--T---TTAAAACATATTGCACATTCACCGGCCTGAAAATATC-AAGGGTG---------------------------------------TTCCTCAAAAAGTTCCTGCAAATACACAC-------------A----CAC--A--------C-ATTTGCAGG
droEug1	scf7180000409474:1490043-1490166 +			AAA----------------------------------------------------------------------------------------------TT---TCTA-GTATTTCGGTTCGCCTTTTGTGCAATTTTAGAGT------CAATAGAAAATTGCACTTCAGACGGCCGGATGACTTG-AAAT------------------------------------ACAAAACATCTTAAAATCTA-----------------------------GAAAA--CT-AAGTGTTAA-TT-----TT
droYak3	2R:12724650-12724842 +	dya-mir-312	Known_mirbase	ATT----------ACCATATTTATATT-------------------------------------------A--TTATAAATAAAGTTACAAATTGCGTT---TGAA-GCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTATT---AAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTT-TAAACGAATCATTT---------------------AAACAACGCATTAAAAAACAGTTT-AA----AAAT------ATCTCACTTTCTAGA----T--A--------G-TTTTGCGGA
droEre2	scaffold_4845:10616613-10616814 -	der-mir-312-2	Known_mirbase	ATT----------ACCATATTTATATAATTGATTATG--------------------------------------TGAATTAAG-------------TT---TGAA-GCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTT-TTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTT-TAAACAAAACATTTTAAATAAAAACTAATACTGTTATAG---GCGGT-AAAAACAGTTG-AA------A--------CCCCTAACCCTAGA----T--A--------G-TTTTTCGGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

CAGCAATG-TATTAGGATATTTATTTT-------------------------------------------T--TGTTAAGCAAA-------------TC---TTC-AGTTTTTCGGCTGTGGTTAGTGTCAATTCTTTTTA--T---TTGACAAGCATTGCACTCTTCACGGCCGGATAAATGA-GGGTCTATG----T---------------------TAAACAA-------------AATT-----AATAA------------------------------AAGTGTTAA-ATTTGCAGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................CATTGCACTCTTCACGGCCGGA..............................................................................................................................	22	1	81.00	81	71	10
...........................................................................................................................................................CATTGCACTCTTCACGGCCGG...............................................................................................................................	21	1	29.00	29	25	4
...........................................................................................................................................................CATTGCACTCTTCACGGCCGGAA.............................................................................................................................	23	1	7.00	7	5	2
...........................................................................................................................................................CATTGCACTCTTCACGGCCG................................................................................................................................	20	1	7.00	7	5	2
...........................................................................................................................................................CATTGCACTCTTCACGGCCGGAT.............................................................................................................................	23	1	4.00	4	3	1
............................................................................................................................................................ATTGCACTCTTCACGGCCGGA..............................................................................................................................	21	1	4.00	4	4	0
...........................................................................................................................................................CATTGCACTCTTCACGGCCGGT..............................................................................................................................	22	1	4.00	4	4	0
............................................................................................................................................................ATTGCACTCTTCACGGCCGG...............................................................................................................................	20	1	3.00	3	3	0
.................................................................................................................CGGCTGTGGTTAGTGTCAATTCT.......................................................................................................................................................................	23	1	2.00	2	2	0
.............................................................................................................................................................TTGCACTCTTCACGGCCGGA..............................................................................................................................	20	1	1.00	1	1	0
...........................................................................................................................................................CATTGCACTCTTCACGGCCGGATTC...........................................................................................................................	25	1	1.00	1	0	1
............................................................................................................................................................ATTGCACTCTTCACGGCCGGAT.............................................................................................................................	22	1	1.00	1	1	0

droVir3

CAGTAGTG-T--------ACTAATTTATTTTTCTACTAGTTCTGTGCTTGAATTATAGTGCAATTTTCTAT--TGTCAAAAGTA-------------TC---GCT-AGTTTTTCGGCTGTGGTCAGTGTCAATTCTTTTTTTTTATTTTTACAAGTATTGCACTTTTCACGGCCGGAAAAATTGAGATTC----CATTT---------------------AAAACACAAGATTGCGCACAATTCAAT----TAAT------ATGTGCAAGCTA-------------------TATTTTTCAGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGA..............................................................................................................................	22	1	991228.00	991228	144	7	21885	7532	7732	583	3436	44	799	49	359	2204	6626	2592	0	9	1	4	0	29	2923	3	20	11234	13548	11511	20992	25361	5501	3010	1596	3992	14243	950	17047	13406	14540	19218	6685	952	12	50	50	26	27	40	31	19	38	21	37	46	10	13	9	1	0	17	24	1796	25	333	2	2319	4271	99630	97000	89317	7787	7437	4412	5372	6204	6341	76079	64167	67938	94431	115129
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAA.............................................................................................................................	23	1	268541.00	268541	8	0	4005	3294	1236	169	856	19	208	22	100	878	5134	1168	0	1	0	1	0	7	826	1	3	1839	5172	4842	7873	7057	1668	1289	630	1799	14165	331	11749	11623	19600	13745	3354	293	12	15	7	6	2	7	4	0	19	1	3	5	2	0	0	0	0	3	1	1238	9	75	0	1315	1703	24008	22986	18249	220	193	125	131	155	152	15951	11474	9755	14891	20859
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAA............................................................................................................................	24	1	196788.00	196788	4	0	3291	1949	749	26	489	2	275	8	136	1744	12685	2452	0	1	0	0	0	7	76	0	2	1650	7172	4552	10268	5296	150	123	82	272	13764	70	10685	12725	29887	12451	5848	34	7	11	1	5	6	7	2	4	7	3	1	1	1	3	0	0	0	1	4	1566	12	13	6	2145	2268	12949	10154	5410	242	223	101	133	111	133	4994	3022	2785	5074	6458
...........................................................................................................................................................TATTGCACTTTTCACGGCCGG...............................................................................................................................	21	1	174200.00	174200	37	0	7643	3184	1141	315	667	32	148	43	70	214	1516	322	0	1	0	1	0	0	1958	1	0	2447	2858	1900	3648	2817	2725	1700	860	2427	3672	563	3912	3947	5080	4501	2398	640	10	14	7	11	4	11	14	7	9	13	30	18	10	5	9	0	0	1	14	561	6	176	0	165	860	23706	17639	8934	539	356	296	235	481	428	10644	7532	8597	14331	15139
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAA...........................................................................................................................	25	1	58603.00	58603	0	2	1049	258	158	2	80	1	72	2	39	669	6445	930	0	0	0	0	0	0	6	0	0	408	2210	1419	3522	1320	13	10	3	27	4146	13	3251	3559	11029	3193	1907	2	0	2	4	0	1	1	0	0	1	0	1	1	0	0	0	0	0	0	0	261	3	1	3	897	764	3151	2380	990	67	67	44	54	49	44	906	465	503	954	1244
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAT.............................................................................................................................	23	1	43978.00	43978	82	1	626	598	166	23	84	0	15	0	3	50	281	57	0	0	0	0	0	3	174	0	0	313	476	468	723	665	334	239	158	493	1041	56	719	892	1006	1071	323	57	7	16	10	6	6	11	5	5	11	7	13	7	5	4	2	0	1	3	13	115	1	10	1	190	198	5428	5181	3494	486	548	429	407	453	357	3654	1863	2005	3283	4546
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAC.............................................................................................................................	23	1	33768.00	33768	77	1	107	186	38	6	20	0	1	0	1	2	32	3	0	0	0	0	0	0	61	0	0	56	81	51	121	86	107	59	27	97	147	19	103	119	210	155	90	22	1	3	4	4	1	0	0	0	3	1	2	0	0	0	2	0	0	0	1	20	0	2	0	26	24	5118	5199	2809	560	484	240	262	306	377	2382	2238	2356	4316	4942
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAA..........................................................................................................................	26	1	21947.00	21947	0	0	585	72	29	2	27	0	3	0	7	44	778	60	0	0	0	1	0	0	3	0	0	90	1021	565	1910	477	4	0	0	8	1499	5	1452	1351	4401	1027	656	1	2	1	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	40	1	0	0	581	305	1367	1031	469	35	22	12	22	30	21	359	258	213	489	607
...........................................................................................................................................................TATTGCACTTTTCACGGCCG................................................................................................................................	20	1	19757.00	19757	57	0	1894	207	222	140	129	14	14	19	7	27	165	37	0	0	0	0	0	0	682	0	0	501	452	300	618	388	889	837	624	1465	559	274	642	830	1424	636	716	354	0	2	0	4	1	3	1	2	4	1	4	1	3	1	1	0	0	2	3	98	2	47	0	5	112	1144	674	162	174	126	138	112	152	144	312	119	218	536	326
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAA.........................................................................................................................	27	1	10320.00	10320	0	0	420	25	7	0	10	0	4	0	2	11	246	6	0	0	0	0	0	1	0	0	0	22	496	269	1153	199	0	1	0	2	767	2	798	634	2451	482	307	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	433	193	417	302	102	1	1	0	0	0	0	78	92	73	128	173
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGC..............................................................................................................................	22	1	5853.00	5853	1	0	15	92	580	27	236	0	1	0	14	9	33	9	0	0	0	1	0	1	234	0	0	620	19	6	27	29	8	4	1	12	23	40	19	17	13	14	394	71	2	1	1	3	0	3	1	0	2	0	2	0	0	1	0	0	0	0	0	34	0	1	0	3	3	875	736	713	24	31	24	15	20	23	607	23	31	65	39
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAC............................................................................................................................	24	1	5722.00	5722	1	0	19	36	8	0	12	0	0	0	1	0	50	1	0	0	0	0	0	0	3	0	0	27	13	16	16	11	0	3	1	6	29	0	17	15	45	28	84	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	4	2	861	737	633	32	20	17	27	19	25	521	423	376	734	829
.................................................................................................................CGGCTGTGGTCAGTGTCAATTCT.......................................................................................................................................................................	23	1	5569.00	5569	4	0	26	0	35	5	54	1	3	2	5	0	2	2	0	0	0	0	0	0	12	0	0	32	95	49	255	196	45	8	12	22	2	8	6	1	10	6	40	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	28	30	31	24	26	844	934	489	587	614	916	29	7	8	19	36
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAT............................................................................................................................	24	1	5052.00	5052	0	0	46	109	20	2	5	0	1	0	0	14	54	23	0	0	0	0	0	0	19	0	0	27	63	56	99	96	51	28	20	82	161	11	161	173	258	181	59	7	0	1	1	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	1	27	0	1	0	26	35	581	535	356	1	1	5	2	0	3	291	283	242	331	499
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGT..............................................................................................................................	22	1	5050.00	5050	0	0	181	263	59	25	40	2	4	4	0	14	86	22	0	1	0	0	0	1	125	0	0	105	131	97	148	116	172	169	73	226	127	42	170	150	283	203	143	46	1	1	0	0	2	4	0	1	1	0	0	0	0	1	2	0	0	0	2	59	0	7	2	19	49	351	314	215	3	20	18	5	18	9	165	83	97	190	183
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAA........................................................................................................................	28	1	4285.00	4285	0	0	258	5	7	1	4	0	0	0	0	2	88	3	0	0	0	0	0	0	0	0	0	6	169	110	540	69	2	0	0	0	152	0	229	189	1003	256	133	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	251	113	238	156	47	0	0	0	0	0	0	40	47	40	49	75
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAG.............................................................................................................................	23	1	2321.00	2321	3	0	73	51	9	0	7	0	1	0	3	6	58	7	0	0	0	0	0	0	7	0	0	12	23	22	33	18	12	16	9	14	53	1	46	56	68	71	18	3	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	13	0	4	0	17	18	288	251	136	22	10	7	9	13	8	107	104	143	238	229
............................................................................................................................................................ATTGCACTTTTCACGGCCGGA..............................................................................................................................	21	1	1935.00	1935	0	0	1349	57	5	0	5	0	0	0	0	5	9	8	0	0	0	0	0	0	1	0	0	10	19	9	26	31	8	7	2	7	20	0	27	19	21	26	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	0	1	1	3	0	29	30	18	1	9	3	0	0	0	17	27	22	41	46
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGATT............................................................................................................................	24	1	1747.00	1747	5	0	17	40	4	1	0	0	0	0	0	1	13	4	0	0	0	0	0	0	10	0	0	9	20	15	31	21	18	8	14	24	36	6	13	20	19	35	10	5	0	0	2	4	2	1	5	0	2	4	3	0	0	1	1	0	0	1	2	13	0	1	0	14	9	182	194	144	39	25	22	26	29	19	120	83	91	130	179
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAT...........................................................................................................................	25	1	1732.00	1732	0	0	53	64	0	0	3	0	3	0	0	15	101	15	0	0	0	0	0	1	1	0	0	6	65	28	91	44	1	4	1	10	154	1	78	130	312	94	76	0	1	0	0	0	0	0	0	0	2	0	2	0	0	1	0	0	0	0	0	34	0	0	0	24	12	88	41	31	0	2	0	0	2	1	30	18	18	31	43
...........................................................................................................................................................TATTGCACTTTTCACGGC..................................................................................................................................	18	1	1473.00	1473	12	0	6	42	1	0	1	0	1	0	1	0	1	1	0	0	0	0	0	0	4	0	0	2	10	2	9	4	2	1	0	5	7	0	8	3	4	3	3	1	2	5	2	1	3	1	3	0	7	1	2	0	1	1	1	0	0	2	2	0	0	0	0	7	14	91	69	88	177	202	82	149	100	72	97	24	15	66	52
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGG..............................................................................................................................	22	1	1335.00	1335	20	1	20	12	17	3	9	0	1	0	1	4	13	1	0	0	0	0	0	0	3	0	0	19	10	2	13	9	4	0	2	7	22	2	13	6	8	13	24	5	0	1	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	26	0	2	0	6	5	101	148	93	33	29	24	14	16	39	44	111	102	128	146
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAG............................................................................................................................	24	1	1146.00	1146	1	0	22	41	1	0	2	0	2	0	0	10	32	7	0	0	0	0	0	0	0	0	0	4	16	13	21	20	3	2	2	3	35	0	31	36	42	34	8	0	1	2	4	3	1	2	0	2	3	3	2	2	0	0	1	0	0	0	1	8	0	0	0	19	10	110	73	51	33	28	9	8	19	21	33	49	65	95	100
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGACT............................................................................................................................	24	1	1066.00	1066	6	1	3	4	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	2	0	1	0	0	2	1	5	1	0	3	2	4	6	4	0	2	2	0	1	0	0	2	0	2	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	162	193	95	11	11	3	2	4	13	68	65	69	148	157
...........................................................................................................................................................TATTGCACTTTTCACGGCC.................................................................................................................................	19	1	943.00	943	16	0	108	54	7	1	2	0	1	0	0	0	1	0	0	0	0	0	0	0	5	0	0	6	22	16	21	17	15	25	8	29	28	0	22	25	35	17	8	2	0	0	3	0	1	1	0	0	2	0	1	0	1	1	0	0	0	0	1	0	0	0	2	18	13	34	27	37	49	28	12	26	38	23	87	4	1	20	22
................................................................................................................TCGGCTGTGGTCAGTGTCAATTCT.......................................................................................................................................................................	24	1	901.00	901	0	0	1	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	125	140	36	77	78	24	42	70	75	26	30	21	85	64
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAC...........................................................................................................................	25	1	655.00	655	1	0	11	16	2	0	3	0	0	0	0	3	11	1	0	0	0	0	0	0	0	0	0	6	13	4	11	4	2	0	0	0	13	0	13	12	31	11	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	2	1	70	58	45	0	4	0	0	1	7	54	35	41	51	84
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAA............................................................................................................................	23	1	594.00	594	0	0	210	19	1	0	0	0	0	0	1	8	66	15	0	0	0	0	0	0	2	0	0	3	10	5	17	14	0	0	1	1	35	0	17	31	41	35	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	10	4	15	7	1	1	0	0	1	0	0	4	0	3	4	4
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAAA.......................................................................................................................	29	1	566.00	566	0	0	58	2	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	6	3	20	2	0	0	0	0	6	0	0	5	23	6	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	85	54	101	69	18	0	0	0	0	0	0	13	17	11	19	26
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAA.............................................................................................................................	22	1	517.00	517	0	0	242	27	0	1	1	0	0	0	0	4	15	4	0	0	0	0	0	0	0	0	0	1	5	5	19	10	4	1	1	2	26	0	24	10	16	20	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	9	13	10	0	0	0	0	0	0	10	4	8	10	8
............................................................................................................................................................ATTGCACTTTTCACGGCCGG...............................................................................................................................	20	1	516.00	516	0	0	425	10	0	1	0	0	0	0	0	1	3	0	0	0	0	0	0	0	1	0	0	1	0	3	4	2	2	1	0	2	4	0	7	6	8	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	5	2	0	0	0	0	0	0	3	0	3	9	5
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAG...........................................................................................................................	25	1	417.00	417	0	0	5	9	1	0	1	0	0	0	0	5	25	1	0	0	0	0	0	0	0	0	0	1	4	4	11	2	0	0	0	0	14	0	9	9	16	17	7	0	3	1	1	0	0	0	2	1	2	0	3	0	0	0	0	0	0	0	0	4	0	0	0	2	8	37	25	10	24	30	10	12	19	18	3	8	10	20	23
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGTT.............................................................................................................................	23	1	415.00	415	0	0	11	24	1	2	1	0	1	0	0	0	7	0	0	0	0	0	0	0	23	0	0	8	4	4	6	1	37	45	18	71	20	8	9	9	16	13	6	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	3	1	7	12	6	2	0	0	0	0	1	3	1	2	7	5
...........................................................................................................................................................TATTGCACTTTTCACGGCCGA...............................................................................................................................	21	1	384.00	384	0	0	20	6	2	0	1	0	1	1	0	3	1	0	0	0	0	0	0	0	9	0	0	4	5	3	4	4	1	2	0	9	5	0	4	6	10	11	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	4	92	53	29	0	0	0	0	0	0	28	6	9	26	14
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAT..........................................................................................................................	26	1	374.00	374	0	0	12	10	0	0	1	0	0	0	0	1	18	4	0	0	0	0	0	0	0	0	0	1	11	11	18	8	0	0	0	2	30	0	25	21	71	33	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	6	16	16	10	0	4	0	1	4	1	0	4	5	10	4
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGACC............................................................................................................................	24	1	345.00	345	23	0	1	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	2	0	0	6	0	1	1	0	4	0	0	1	3	0	2	1	1	1	1	1	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	32	24	11	3	8	3	8	7	11	16	26	30	43	52
...............................................................................................................................................................GCACTTTTCACGGCCGGA..............................................................................................................................	18	1	341.00	341	0	0	25	2	4	0	4	0	2	0	0	0	2	3	0	0	0	0	0	0	2	0	0	12	6	5	15	7	4	0	0	2	8	1	13	6	4	7	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	7	13	19	41	4	2	1	0	3	6	49	4	5	9	31
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGATG............................................................................................................................	24	1	315.00	315	1	0	4	2	1	1	1	0	1	0	0	1	0	1	0	0	0	0	0	0	1	0	0	6	6	3	5	8	3	2	2	4	11	1	3	7	6	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	35	23	20	9	19	6	5	8	4	18	13	14	13	38
...........................................................................................................................................................TATTGCACTTTTCACGGCCGT...............................................................................................................................	21	1	315.00	315	0	0	26	6	3	4	0	0	0	1	0	1	3	0	0	0	0	0	0	0	29	0	0	27	1	2	5	2	15	20	11	37	1	8	4	6	14	4	9	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	8	0	0	0	17	11	6	0	0	0	0	0	0	6	0	3	3	2
................................................................................................................TCGGCTGTGGTCAGTGTCAATT.........................................................................................................................................................................	22	1	312.00	312	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	70	71	21	10	4	2	5	4	5	5	16	11	43	39
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAACA.........................................................................................................................	27	1	295.00	295	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	4	0	29	68	150	33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................TTGCACTTTTCACGGCCGGA..............................................................................................................................	20	1	277.00	277	0	0	83	12	3	2	1	0	0	0	0	6	10	7	0	0	0	0	0	0	4	0	0	2	11	6	10	16	2	1	1	2	9	1	8	7	11	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	12	3	8	0	0	0	0	0	1	7	2	1	4	9
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGCT.............................................................................................................................	23	1	276.00	276	1	0	0	7	14	1	12	0	0	0	1	0	5	0	0	0	0	0	0	0	19	1	0	24	0	1	1	0	0	2	0	0	0	2	0	2	4	0	24	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	43	39	24	0	0	1	0	0	0	28	0	0	2	1
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGATC............................................................................................................................	24	1	273.00	273	38	1	14	8	2	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	9	0	0	4	0	2	2	0	16	6	7	14	0	2	4	1	2	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	4	2	0	1	7	8	6	20	10	9	16	14	17	2	4	4	2	3
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAC..........................................................................................................................	26	1	270.00	270	0	0	0	5	1	0	4	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2	2	1	3	0	0	0	0	0	4	0	6	5	11	11	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	5	39	31	13	1	1	0	0	0	0	15	12	17	28	35
................................................................................................................TCGGCTGTGGTCAGTGTCAAT..........................................................................................................................................................................	21	1	256.00	256	0	0	1	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	52	56	12	8	4	2	8	4	10	8	8	9	29	35
..........................................................................................................................................................GTATTGCACTTTTCACGGCCGGA..............................................................................................................................	23	1	231.00	231	0	0	21	6	1	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	9	3	3	0	0	1	2	0	2	6	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	14	15	7	2	1	0	2	0	0	5	29	21	32	38
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAC.........................................................................................................................	27	1	208.00	208	0	0	0	3	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	2	4	4	2	0	0	0	0	1	0	3	6	12	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	30	31	8	0	0	0	0	0	0	10	9	13	21	34
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAAA...........................................................................................................................	24	1	200.00	200	0	0	84	4	0	0	2	0	1	0	0	0	19	6	0	0	0	0	0	0	0	0	0	1	2	1	11	6	0	1	0	0	10	0	4	15	11	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	4	1	0	1	0	0	1	0	0	1	1	1	1	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGC...............................................................................................................................	21	1	194.00	194	0	0	3	17	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	18	0	0	4	0	1	0	1	0	0	0	0	3	0	6	1	5	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	51	27	24	0	1	0	0	0	0	12	0	3	4	3
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGCC.............................................................................................................................	23	1	174.00	174	0	0	0	0	6	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	6	0	0	14	0	0	0	0	0	1	0	1	0	0	0	0	0	0	13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	49	32	27	0	0	0	0	2	0	14	1	0	0	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAG..........................................................................................................................	26	1	156.00	156	0	0	1	0	0	0	0	0	0	0	0	1	18	1	0	0	0	0	0	0	0	0	0	0	3	0	1	1	0	0	0	0	11	0	7	1	10	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	3	1	28	10	3	2	0	0	0	0	0	2	5	5	11	22
.............................................................................................................................................................TTGCACTTTTCACGGCCGGAA.............................................................................................................................	21	1	155.00	155	0	0	24	14	0	0	0	0	0	0	0	2	7	5	0	0	0	0	0	0	0	0	0	0	5	3	7	4	2	0	0	0	18	0	12	10	21	10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	0	0	0	0	0	2	1	2
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAT.........................................................................................................................	27	1	149.00	149	0	0	5	2	0	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	5	2	13	2	0	0	0	0	12	0	11	12	32	10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	5	1	10	4	1	0	0	0	0	0	0	2	2	0	6	3
...........................................................................................................................................................TATTGCACTTTTCACGGCCA................................................................................................................................	20	1	148.00	148	0	0	14	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	4	4	8	2	0	0	1	1	8	1	7	6	19	3	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	21	12	7	1	0	0	0	0	0	5	0	1	6	2
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGTC.............................................................................................................................	23	1	140.00	140	10	0	20	3	3	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	1	2	4	2	0	11	13	3	5	1	2	1	0	2	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	2	0	4	3	3	0	2	0	3	5	2	1	1	3	1
.................................................................................................................CGGCTGTGGTCAGTGTCAATTC........................................................................................................................................................................	22	1	137.00	137	0	0	6	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	6	3	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	1	1	13	11	21	20	10	19	0	0	1	1	2
.............................................................................................................................................................TTGCACTTTTCACGGCCGGAAA............................................................................................................................	22	1	131.00	131	0	0	11	5	0	0	0	0	3	0	0	1	24	4	0	0	0	0	0	0	0	0	0	0	3	4	4	2	0	0	1	0	8	0	11	12	16	9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	3	1	0	0	0	0	0	0	2	0	1	2	0
............................................................................................................................................................ATTGCACTTTTCACGGCCG................................................................................................................................	19	1	125.00	125	0	0	113	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	2	1	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAATT...........................................................................................................................	25	1	123.00	123	0	0	1	11	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	5	0	0	1	0	0	3	1	3	4	0	4	4	1	5	3	10	4	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	6	11	15	0	0	0	0	1	0	2	3	2	5	4
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGATTT...........................................................................................................................	25	1	120.00	120	1	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	4	3	7	2	6	11	1	1	2	4	2	1	0	0	0	0	0	1	0	0	2	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	8	6	6	1	1	2	0	6	3	5	5	4	7	5
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAACA........................................................................................................................	28	1	119.00	119	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	6	13	86	10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAACT...........................................................................................................................	25	1	116.00	116	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	18	21	10	0	0	1	0	0	0	12	7	12	14	8
...............................................................................................................................................................GCACTTTTCACGGCCGGAAA............................................................................................................................	20	1	102.00	102	0	0	9	1	4	1	2	0	0	0	0	1	12	5	0	0	0	0	0	0	0	0	0	4	2	0	8	0	0	0	0	0	2	0	5	2	7	2	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	2	3	1	0	0	0	0	0	0	1	0	2	4	2
................................................................................................................TCGGCTGTGGTCAGTGTCAATTC........................................................................................................................................................................	23	1	97.00	97	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	14	19	5	9	1	4	3	6	5	3	6	0	8	9
..............................................................................................................................................................TGCACTTTTCACGGCCGGA..............................................................................................................................	19	1	95.00	95	0	0	24	1	3	0	1	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	5	4	2	4	5	2	0	0	0	3	2	6	1	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	3	0	0	0	0	1	1	0	2	0	2	3
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAAAA..........................................................................................................................	25	1	94.00	94	0	0	54	0	0	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	1	1	0	2	2	0	0	0	0	6	0	0	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	4	1	0	0	0	0	0	0	0	0	0	0	1	2
...............................................................................................................................................................GCACTTTTCACGGCCGGAA.............................................................................................................................	19	1	94.00	94	0	0	4	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	4	3	2	3	2	0	0	0	5	0	5	2	6	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	3	4	7	0	0	0	0	0	0	8	0	1	5	6
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGACG............................................................................................................................	24	1	90.00	90	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	11	3	0	0	1	0	0	1	7	10	11	15	17
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGATTG...........................................................................................................................	25	1	88.00	88	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	10	6	10	5	12	10	3	3	3	3	0	4	6
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAC........................................................................................................................	28	1	86.00	86	0	0	1	1	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	1	0	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	15	9	4	0	0	0	0	0	0	5	5	4	12	12

droMoj3

TTGCAAATGCTTCG------------------------------------------AGTGAAACTTT---T--AGCCAAGCTTT-------------TTTGCATT-CGTTTTCCGGTTGTGAATTGTGTCAATTCTTTTTA--T---TTTACAAGTATTGCACTTTTCACGGCCGGAAAAAGGA-TAAAATA----TTT---------------------AACACGTCTTAATTCGCA------------------------------------GATATT--A-TAATGTGTA-GTCTGCAAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGA..............................................................................................................................	22	1	91886.00	91886	34899	2255	42	65	53886	739
...........................................................................................................................................................TATTGCACTTTTCACGGCCGG...............................................................................................................................	21	1	57354.00	57354	12565	1673	16	28	42513	559
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAA.............................................................................................................................	23	1	39430.00	39430	8539	1627	18	23	29012	211
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAA............................................................................................................................	24	1	22266.00	22266	10218	1603	31	49	9815	550
...........................................................................................................................................................TATTGCACTTTTCACGGCCG................................................................................................................................	20	1	8819.00	8819	1948	542	7	6	6086	230
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAA...........................................................................................................................	25	1	3454.00	3454	2480	134	11	14	634	181
............................................................................................................................................................ATTGCACTTTTCACGGCCGGA..............................................................................................................................	21	1	2628.00	2628	2012	6	0	0	610	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAT.............................................................................................................................	23	1	2313.00	2313	576	48	2	1	1653	33
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAA..........................................................................................................................	26	1	1294.00	1294	1137	17	1	2	77	60
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGT..............................................................................................................................	22	1	1192.00	1192	225	67	0	4	859	37
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAA.............................................................................................................................	22	1	1055.00	1055	480	2	0	0	573	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAC.............................................................................................................................	23	1	1043.00	1043	147	32	0	0	862	2
...........................................................................................................................................................TATTGCACTTTTCACGGCC.................................................................................................................................	19	1	888.00	888	80	9	0	0	797	2
............................................................................................................................................................ATTGCACTTTTCACGGCCGG...............................................................................................................................	20	1	857.00	857	634	0	0	0	223	0
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAA............................................................................................................................	23	1	749.00	749	620	0	0	0	129	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAA.........................................................................................................................	27	1	715.00	715	673	2	0	2	12	26
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGC..............................................................................................................................	22	1	621.00	621	75	39	0	0	503	4
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAT............................................................................................................................	24	1	577.00	577	78	27	0	0	465	7
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAAAA........................................................................................................................	28	1	424.00	424	415	0	0	0	0	9
...........................................................................................................................................................TATTGCACTTTTCACGGC..................................................................................................................................	18	1	393.00	393	11	0	0	0	381	1
..........................................................................................................................................................GTATTGCACTTTTCACGGCCGGA..............................................................................................................................	23	1	352.00	352	95	10	0	0	247	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAG.............................................................................................................................	23	1	342.00	342	98	14	0	0	225	5
...........................................................................................................................................................TATTGCACTTTTCACGGCCGC...............................................................................................................................	21	1	214.00	214	5	3	0	0	203	3
.............................................................................................................................................................TTGCACTTTTCACGGCCGGA..............................................................................................................................	20	1	200.00	200	92	0	0	0	107	1
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAAA...........................................................................................................................	24	1	195.00	195	181	0	0	0	13	1
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAG............................................................................................................................	24	1	178.00	178	43	9	0	0	123	3
..........................................................................................................................................................GTATTGCACTTTTCACGGCCGGAA.............................................................................................................................	24	1	169.00	169	23	4	0	0	141	1
..........................................................................................................................................................GTATTGCACTTTTCACGGCCGG...............................................................................................................................	22	1	169.00	169	41	4	0	0	124	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGA...............................................................................................................................	21	1	167.00	167	34	1	0	0	120	12
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAC............................................................................................................................	24	1	166.00	166	27	9	0	0	130	0
.............................................................................................................................................................TTGCACTTTTCACGGCCGGAA.............................................................................................................................	21	1	139.00	139	21	0	0	0	118	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGG..............................................................................................................................	22	1	133.00	133	39	25	0	2	66	1
............................................................................................................................................................ATTGCACTTTTCACGGCCG................................................................................................................................	19	1	119.00	119	94	0	0	1	24	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGT...............................................................................................................................	21	1	111.00	111	18	1	0	0	74	18
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAT...........................................................................................................................	25	1	101.00	101	34	4	0	0	61	2
.............................................................................................................................................................TTGCACTTTTCACGGCCGG...............................................................................................................................	19	1	81.00	81	36	0	0	0	45	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGATT............................................................................................................................	24	1	81.00	81	25	6	0	0	46	4
.............................................................................................................................................................TTGCACTTTTCACGGCCGGAAA............................................................................................................................	22	1	79.00	79	42	0	0	0	36	1
..........................................................................................................................................................GTATTGCACTTTTCACGGCCGGAAA............................................................................................................................	25	1	70.00	70	36	1	0	0	32	1
...........................................................................................................................................................TATTGCACTTTTCACGGCCC................................................................................................................................	20	1	67.00	67	2	1	0	0	64	0
.................................................................................................................CGGTTGTGAATTGTGTCAATTCT.......................................................................................................................................................................	23	1	61.00	61	47	0	0	0	9	5
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAT.............................................................................................................................	22	1	60.00	60	52	0	0	0	8	0
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAAAA..........................................................................................................................	25	1	58.00	58	58	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGTT.............................................................................................................................	23	1	57.00	57	11	2	1	1	35	7
..............................................................................................................................................................TGCACTTTTCACGGCCGGA..............................................................................................................................	19	1	49.00	49	22	0	0	0	27	0
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAAAAA.........................................................................................................................	26	1	49.00	49	48	0	0	0	1	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCA................................................................................................................................	20	1	46.00	46	32	2	0	0	11	1
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAC...........................................................................................................................	25	1	46.00	46	14	2	0	0	30	0
...........................................................................................................................................................TATTGCACTTTTCACGGCT.................................................................................................................................	19	1	44.00	44	0	0	0	0	44	0
...........................................................................................................................................................TATTGCACTTTTCACGGCG.................................................................................................................................	19	1	36.00	36	0	1	0	0	35	0
...............................................................................................................................................................GCACTTTTCACGGCCGGA..............................................................................................................................	18	1	32.00	32	15	1	0	0	16	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGACT............................................................................................................................	24	1	31.00	31	3	2	0	0	26	0
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAAAAAAA........................................................................................................................	27	1	30.00	30	30	0	0	0	0	0
..............................................................................................................................................................TGCACTTTTCACGGCCGGAA.............................................................................................................................	20	1	30.00	30	3	0	0	0	27	0
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAG...........................................................................................................................	25	1	30.00	30	12	1	0	1	14	2
..........................................................................................................................................................GTATTGCACTTTTCACGGCCG................................................................................................................................	21	1	30.00	30	9	0	0	0	21	0
...............................................................................................................................................................GCACTTTTCACGGCCGGAAA............................................................................................................................	20	1	23.00	23	11	0	0	0	12	0
.................................................................................................................................................................ACTTTTCACGGCCGGAAA............................................................................................................................	18	1	21.00	21	8	0	0	0	12	1
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGAAAAT..........................................................................................................................	26	1	21.00	21	11	0	0	0	10	0
............................................................................................................................................................ATTGCACTTTTCACGGCCGGT..............................................................................................................................	21	1	20.00	20	10	0	0	0	8	2
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGCT.............................................................................................................................	23	1	19.00	19	3	3	1	0	10	2
...........................................................................................................................................................TATTGCACTTTTCACGGCCGGTC.............................................................................................................................	23	1	18.00	18	8	0	0	0	9	1
..............................................................................................................................................................TGCACTTTTCACGGCCGGAAA............................................................................................................................	21	1	18.00	18	10	2	0	0	6	0
...............................................................................................................................................................GCACTTTTCACGGCCGGAA.............................................................................................................................	19	1	17.00	17	1	0	0	0	16	0
............................................................................................................................................................ATTGCACTTTTCACGGCCGGAC.............................................................................................................................	22	1	17.00	17	11	0	0	0	6	0
..............................................................................................................................................................TGCACTTTTCACGGCCGG...............................................................................................................................	18	1	17.00	17	6	1	0	0	10	0
............................................................................................................................................................ATTGCACTTTTCACGGCC.................................................................................................................................	18	1	15.00	15	5	0	0	0	10	0

droWil2

AAT---------------------------------------------------------------------------------------------------------TTTTTAGGTTCGTTTAGTCTGCAAATTGTAATA--T---ACGAAAATAATTGCACACTTCACGGCCGGAAAAGTTC-AAGTTA----------------------------------------AACCGCAGAAATTTCCTCAAAAAATGTACTAA--------------------A-TG-----T-GACCAGAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................AATTGCACACTTCACGGCCGGA..............................................................................................................................	22	1	22191.00	22191	9	5931	526	15666	59
...........................................................................................................................................................AATTGCACACTTCACGGCCGG...............................................................................................................................	21	1	11801.00	11801	0	3331	608	7787	75
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAA.............................................................................................................................	23	1	7554.00	7554	0	1103	185	6224	42
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAA............................................................................................................................	24	1	4406.00	4406	0	1001	43	3359	3
............................................................................................................................................................ATTGCACACTTCACGGCCGGAA.............................................................................................................................	22	1	2034.00	2034	0	416	51	1555	12
...........................................................................................................................................................AATTGCACACTTCACGGCCG................................................................................................................................	20	1	1952.00	1952	31	732	148	1028	13
............................................................................................................................................................ATTGCACACTTCACGGCCGGA..............................................................................................................................	21	1	1901.00	1901	1	624	76	1191	9
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAA............................................................................................................................	23	1	1098.00	1098	1	239	10	847	1
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTG.......................................................................................................................................................................	23	1	988.00	988	13	302	38	633	2
...........................................................................................................................................................AATTGCACACTTCACGGCCGGT..............................................................................................................................	22	1	752.00	752	2	49	50	649	2
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAAA...........................................................................................................................	25	1	621.00	621	0	252	3	364	2
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAT.............................................................................................................................	23	1	386.00	386	3	61	19	301	2
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGT......................................................................................................................................................................	24	1	386.00	386	0	123	18	245	0
............................................................................................................................................................ATTGCACACTTCACGGCCGG...............................................................................................................................	20	1	330.00	330	0	196	23	110	1
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGTAA....................................................................................................................................................................	26	1	209.00	209	0	22	0	187	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAT............................................................................................................................	24	1	174.00	174	0	10	14	150	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGTAAA...................................................................................................................................................................	27	1	172.00	172	0	30	0	142	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATT........................................................................................................................................................................	22	1	148.00	148	10	43	11	81	3
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAAA...........................................................................................................................	24	1	144.00	144	0	54	3	87	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGA......................................................................................................................................................................	24	1	141.00	141	0	5	1	135	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAAAA..........................................................................................................................	26	1	121.00	121	0	74	0	47	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAG.............................................................................................................................	23	1	119.00	119	0	11	15	91	2
.............................................................................................................................................................TTGCACACTTCACGGCCGGAAA............................................................................................................................	22	1	85.00	85	0	27	2	56	0
.............................................................................................................................................................TTGCACACTTCACGGCCGGAA.............................................................................................................................	21	1	82.00	82	0	35	2	45	0
................................................................................................................TAGGTTCGTTTAGTCTGCAAATTG.......................................................................................................................................................................	24	1	79.00	79	0	27	2	50	0
.............................................................................................................................................................TTGCACACTTCACGGCCGGA..............................................................................................................................	20	1	76.00	76	0	48	4	23	1
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGTA.....................................................................................................................................................................	25	1	74.00	74	2	8	1	63	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAG............................................................................................................................	24	1	73.00	73	0	5	7	59	2
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAAAAA.........................................................................................................................	27	1	67.00	67	0	45	0	22	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAC.............................................................................................................................	23	1	66.00	66	1	26	1	37	1
............................................................................................................................................................ATTGCACACTTCACGGCCG................................................................................................................................	19	1	59.00	59	0	44	1	14	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAT............................................................................................................................	23	1	58.00	58	0	9	6	43	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGT...............................................................................................................................	21	1	50.00	50	0	5	19	26	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAT.............................................................................................................................	22	1	42.00	42	1	15	3	23	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAAT...........................................................................................................................	25	1	42.00	42	0	8	1	33	0
...........................................................................................................................................................AATTGCACACTTCACGGCC.................................................................................................................................	19	1	41.00	41	3	17	0	21	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAAAA..........................................................................................................................	25	1	35.00	35	0	22	0	13	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGC..............................................................................................................................	22	1	34.00	34	0	0	0	34	0
................................................................................................................TAGGTTCGTTTAGTCTGCAAATT........................................................................................................................................................................	23	1	33.00	33	0	9	3	20	1
............................................................................................................................................................ATTGCACACTTCACGGCCGGAC.............................................................................................................................	22	1	33.00	33	0	11	0	22	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAAAAAA........................................................................................................................	28	1	31.00	31	0	31	0	0	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGTT.............................................................................................................................	23	1	29.00	29	1	3	2	23	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAAT.........................................................................................................................................................................	21	1	28.00	28	0	9	2	17	0
................................................................................................................TAGGTTCGTTTAGTCTGCAAATTGA......................................................................................................................................................................	25	1	24.00	24	0	0	1	23	0
...........................................................................................................................................................AATTGCACACTTCACGGC..................................................................................................................................	18	1	23.00	23	0	2	2	19	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGG..............................................................................................................................	22	1	20.00	20	2	6	0	12	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAG............................................................................................................................	23	1	17.00	17	0	1	1	15	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGATT............................................................................................................................	24	1	16.00	16	2	4	1	9	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGA...............................................................................................................................	21	1	16.00	16	0	3	0	13	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAC............................................................................................................................	24	1	15.00	15	0	2	0	13	0
..................................................................................................................GGTTCGTTTAGTCTGCAAATTG.......................................................................................................................................................................	22	1	15.00	15	0	15	0	0	0
................................................................................................................TAGGTTCGTTTAGTCTGCAAAT.........................................................................................................................................................................	22	1	13.00	13	1	4	0	8	0
..........................................................................................................................................................TAATTGCACACTTCACGGCCGG...............................................................................................................................	22	1	13.00	13	0	11	0	2	0
.............................................................................................................................................................TTGCACACTTCACGGCCGG...............................................................................................................................	19	1	13.00	13	0	12	0	1	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAA..........................................................................................................................................................................	20	1	12.00	12	0	2	2	8	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGT..............................................................................................................................	21	1	12.00	12	0	5	3	4	0
..............................................................................................................................................................TGCACACTTCACGGCCGGA..............................................................................................................................	19	1	12.00	12	0	11	0	1	0
................................................................................................................TAGGTTCGTTTAGTCTGCAAA..........................................................................................................................................................................	21	1	11.00	11	1	0	5	5	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTAA......................................................................................................................................................................	24	1	11.00	11	0	2	0	9	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTA.......................................................................................................................................................................	23	1	10.00	10	0	4	0	6	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAAC...........................................................................................................................	25	1	10.00	10	0	5	0	5	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAAAAA.........................................................................................................................	26	1	10.00	10	0	6	1	3	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAG.............................................................................................................................	22	1	10.00	10	0	0	1	9	0
.............................................................................................................................................................TTGCACACTTCACGGCCGGAAAA...........................................................................................................................	23	1	9.00	9	0	1	0	8	0
..................................................................................................................GGTTCGTTTAGTCTGCAAATTGT......................................................................................................................................................................	23	1	9.00	9	0	8	0	1	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGTC.............................................................................................................................	23	1	9.00	9	1	0	5	3	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAAT...........................................................................................................................	24	1	8.00	8	0	1	1	6	0
...........................................................................................................................................................AATTGCACACTTCACGGCCA................................................................................................................................	20	1	8.00	8	0	2	0	6	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGC...............................................................................................................................	21	1	8.00	8	0	0	1	7	0
..........................................................................................................................................................TAATTGCACACTTCACGGCCGGA..............................................................................................................................	23	1	8.00	8	0	5	0	3	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAAAG...........................................................................................................................	25	1	7.00	7	0	0	1	6	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGAGT............................................................................................................................	24	1	6.00	6	0	0	3	3	0
...............................................................................................................................................................GCACACTTCACGGCCGGA..............................................................................................................................	18	1	6.00	6	0	6	0	0	0
..............................................................................................................................................................TGCACACTTCACGGCCGG...............................................................................................................................	18	1	6.00	6	0	6	0	0	0
.............................................................................................................................................................TTGCACACTTCACGGCCGGAAAAA..........................................................................................................................	24	1	6.00	6	0	3	0	3	0
.............................................................................................................................................................TTGCACACTTCACGGCCGGAAAAAA.........................................................................................................................	25	1	5.00	5	0	3	0	2	0
.................................................................................................................AGGTTCGTTTAGTCTGCAA...........................................................................................................................................................................	19	1	5.00	5	0	1	0	4	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGTT.....................................................................................................................................................................	25	1	5.00	5	0	0	0	5	0
...........................................................................................................................................................AATTGCACACTTCACGGCCGGTTT............................................................................................................................	24	1	5.00	5	0	0	3	2	0
...............................................................................................................TTAGGTTCGTTTAGTCTGCAAATT........................................................................................................................................................................	24	1	5.00	5	0	2	0	3	0
..........................................................................................................................................................TAATTGCACACTTCACGGCCG................................................................................................................................	21	1	4.00	4	0	3	1	0	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGAAC............................................................................................................................	23	1	4.00	4	0	1	0	3	0
...............................................................................................................TTAGGTTCGTTTAGTCTGCAAAT.........................................................................................................................................................................	23	1	4.00	4	1	0	0	3	0
...............................................................................................................................................................GCACACTTCACGGCCGGAAA............................................................................................................................	20	1	4.00	4	0	2	0	2	0
............................................................................................................................................................ATTGCACACTTCACGGCCGGACT............................................................................................................................	23	1	4.00	4	0	1	0	3	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGTAAT...................................................................................................................................................................	27	1	4.00	4	0	0	0	4	0
.................................................................................................................AGGTTCGTTTAGTCTGCAAATTGTAC....................................................................................................................................................................	26	1	4.00	4	0	0	0	4	0
................................................................................................................TAGGTTCGTTTAGTCTGCAAATTAA......................................................................................................................................................................	25	1	4.00	4	0	2	0	2	0
..............................................................................................................TTTAGGTTCGTTTAGTCTGCA............................................................................................................................................................................	21	1	4.00	4	0	0	2	2	0
..............................................................................................................TTTAGGTTCGTTTAGTCTGCAAATT........................................................................................................................................................................	25	1	4.00	4	0	0	1	3	0

droAna3

TAATAGTG-T----------TTGTGCT-------------------------------------------TTTTAAAAAAAACA-------------TC---TACA-ATTTTCCGGTGCGTCTCTAGTGCAACTCTTGGTTTTT---TATACAAGTATTGCACTTGAGACGGCCGAAATATAGT-GGATCTAAGCGGCT---------------------ATAACCGAAAAGTTTTCAGGAGCTAAA----AAGT------GTTTAGAACTTCG----ATT--T--------T-ATTTGTAGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAA.............................................................................................................................	23	1	108255.00	108255	1456	105424	1248	13	106	8
...........................................................................................................................................................TATTGCACTTGAGACGGCCGA...............................................................................................................................	21	1	103377.00	103377	3918	96420	2583	48	388	20
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAA..............................................................................................................................	22	1	31472.00	31472	1473	28985	720	26	262	6
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAAA............................................................................................................................	24	1	25826.00	25826	557	24508	734	6	21	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCG................................................................................................................................	20	1	10555.00	10555	850	9044	492	15	145	9
.................................................................................................................CGGTGCGTCTCTAGTGCAACT.........................................................................................................................................................................	21	1	3186.00	3186	121	1925	1130	1	7	2
...........................................................................................................................................................TATTGCACTTGAGACGGCC.................................................................................................................................	19	1	2545.00	2545	23	2490	27	1	4	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAT.............................................................................................................................	23	1	2291.00	2291	41	2148	55	5	42	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAT..............................................................................................................................	22	1	1407.00	1407	35	1307	30	3	30	2
............................................................................................................................................................ATTGCACTTGAGACGGCCGAAA.............................................................................................................................	22	1	1249.00	1249	73	1171	4	0	1	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGA...............................................................................................................................	20	1	1115.00	1115	266	836	9	1	3	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAG.............................................................................................................................	23	1	1110.00	1110	9	1083	16	1	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAC.............................................................................................................................	23	1	973.00	973	12	943	16	0	2	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAAT............................................................................................................................	24	1	616.00	616	6	591	14	1	4	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAC..............................................................................................................................	22	1	526.00	526	3	512	11	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGAA..............................................................................................................................	21	1	458.00	458	103	350	2	0	3	0
.................................................................................................................CGGTGCGTCTCTAGTGCAACC.........................................................................................................................................................................	21	1	440.00	440	1	437	2	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGG...............................................................................................................................	21	1	375.00	375	171	171	31	1	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGC..................................................................................................................................	18	1	341.00	341	9	328	3	0	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAAC............................................................................................................................	24	1	341.00	341	3	324	12	0	1	1
...........................................................................................................................................................TATTGCACTTGAGACGGCCGT...............................................................................................................................	21	1	335.00	335	17	269	25	2	19	3
............................................................................................................................................................ATTGCACTTGAGACGGCCGAAAA............................................................................................................................	23	1	314.00	314	34	279	1	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGAAA.............................................................................................................................	21	1	215.00	215	5	210	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAG..............................................................................................................................	22	1	203.00	203	13	175	9	1	4	1
.............................................................................................................................................................TTGCACTTGAGACGGCCGA...............................................................................................................................	19	1	178.00	178	15	162	0	0	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGATT.............................................................................................................................	23	1	170.00	170	5	145	2	1	16	1
.................................................................................................................CGGTGCGTCTCTAGTGCAACTCT.......................................................................................................................................................................	23	1	162.00	162	123	3	0	4	25	7
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAAG............................................................................................................................	24	1	156.00	156	3	148	5	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAAAT...........................................................................................................................	25	1	130.00	130	1	123	5	0	1	0
.................................................................................................................CGGTGCGTCTCTAGTGCAACTC........................................................................................................................................................................	22	1	129.00	129	86	20	15	3	5	0
.................................................................................................................CGGTGCGTCTCTAGTGCAAC..........................................................................................................................................................................	20	1	127.00	127	0	96	31	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGC...............................................................................................................................	21	1	112.00	112	0	65	46	1	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCA................................................................................................................................	20	1	99.00	99	11	85	3	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCC................................................................................................................................	20	1	97.00	97	0	92	5	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCG................................................................................................................................	19	1	91.00	91	37	53	0	0	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAACA............................................................................................................................	24	1	74.00	74	4	63	7	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGAA..............................................................................................................................	20	1	73.00	73	3	69	0	0	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAAAC...........................................................................................................................	25	1	69.00	69	2	65	2	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGAAAA............................................................................................................................	22	1	66.00	66	4	62	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAATA............................................................................................................................	24	1	62.00	62	1	57	4	0	0	0
..............................................................................................................................................................TGCACTTGAGACGGCCGAAA.............................................................................................................................	20	1	60.00	60	1	59	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCT................................................................................................................................	20	1	55.00	55	6	38	6	0	4	1
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAAAG...........................................................................................................................	25	1	49.00	49	1	47	1	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGAAGA............................................................................................................................	24	1	43.00	43	1	40	2	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGATC.............................................................................................................................	23	1	37.00	37	0	34	3	0	0	0
..............................................................................................................................................................TGCACTTGAGACGGCCGA...............................................................................................................................	18	1	35.00	35	1	34	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGTT..............................................................................................................................	22	1	31.00	31	3	25	1	0	2	0
...........................................................................................................................................................TATTGCACTTGAGACGGCT.................................................................................................................................	19	1	29.00	29	0	28	1	0	0	0
...............................................................................................................................................................GCACTTGAGACGGCCGAAA.............................................................................................................................	19	1	27.00	27	0	27	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGAAT.............................................................................................................................	22	1	26.00	26	0	26	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCC.................................................................................................................................	18	1	25.00	25	3	22	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGATG.............................................................................................................................	23	1	24.00	24	2	18	0	0	4	0

droBip1

CAA---------------------------------------------------------------------------------------------------------------------------------ATCTTGGTTTTT---CCAACAAGAATTGCACTCGAGACGGCCAGAATATTGT-GGATCTATGCAGCT---------------------ACAAGCCGAAAGTGTTTAGAAGTTAGC----AAGT------GATTATGATTTCG----ATT--T--------T-ATTTGTAGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TAAGCAAG-----------------------------------------------------------------------------------------AC---CCA-AAATTCTGAGCCGTGGACAGTGATAATGCGATTT---T---TATTTGCGTATTGCACTGGTCCCGGCCTATAAAATTG-GCGTAG----------------------------------------AACGAC-------------------------------------GAAAA--GA-GTG-----T-TTTTTTATT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-----------------------------------------------------------------------------------------------------------GTTTTTCGGACGGTATTTGTGACAATATGCTTAA--T---TTTAGACATATTGCACATTTACCGGCCTGA------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAGGCATA-----------------------------------------------------------------------------------------TT---TTT-GGCGTTTCGGTCCGTCCCAGGAGCAATCCTGTATT--T---CCGACTAGAATTGCACTTGAGACGGCCGGAGTGCTTG-AAAACAAG----------------------------------GAAAGTGCATAGAAACTAACTTAAAACTAGCAG------T-----------CG--A-CCAGCTT-TATTTTGCAGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A----------------------------------------------------------------------------------------------------------GTTTTTCGGACGGTGTCTGCGTCAATATTTCAGT--T---TTAAAACATATTGCACATTCACCGGCCTGAAAATATC-AAGGGTG---------------------------------------TTCCTCAAAAAGTTCCTGCAAATACACAC-------------A----CAC--A--------C-ATTTGCAGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAA----------------------------------------------------------------------------------------------TT---TCTA-GTATTTCGGTTCGCCTTTTGTGCAATTTTAGAGT------CAATAGAAAATTGCACTTCAGACGGCCGGATGACTTG-AAAT------------------------------------ACAAAACATCTTAAAATCTA-----------------------------GAAAA--CT-AAGTGTTAA-TT-----TT	Size	Hit Count	Total Norm	Total
No Reads

droYak3

ATT----------ACCATATTTATATT-------------------------------------------A--TTATAAATAAAGTTACAAATTGCGTT---TGAA-GCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTATT---AAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTT-TAAACGAATCATTT---------------------AAACAACGCATTAAAAAACAGTTT-AA----AAAT------ATCTCACTTTCTAGA----T--A--------G-TTTTGCGGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGA..............................................................................................................................	22	1	40588.00	40588	29	14116	23795	1756	41	77	410	1	1	2	360
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAA.............................................................................................................................	23	1	16980.00	16980	2	3321	13043	554	4	15	37	0	0	1	3
...........................................................................................................................................................TATTGCACTTGAGACGGCCGG...............................................................................................................................	21	1	13682.00	13682	2	4888	7759	860	11	20	121	1	0	0	20
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAT.............................................................................................................................	23	1	8548.00	8548	136	1525	6644	177	4	6	56	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAA............................................................................................................................	24	1	7817.00	7817	1	1932	5500	184	5	6	16	0	0	0	173
...........................................................................................................................................................TATTGCACTTGAGACGGCCG................................................................................................................................	20	1	1902.00	1902	4	673	995	183	4	3	29	0	0	4	7
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAC.............................................................................................................................	23	1	1824.00	1824	44	138	1621	14	0	2	2	0	0	0	3
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGT..............................................................................................................................	22	1	1366.00	1366	0	346	873	86	1	7	52	0	0	1	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGA..............................................................................................................................	21	1	1237.00	1237	0	1030	194	4	0	0	2	0	0	0	7
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATT............................................................................................................................	24	1	563.00	563	15	94	389	25	1	0	12	0	0	0	27
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGC..............................................................................................................................	22	1	401.00	401	1	11	361	19	1	3	5	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATA............................................................................................................................	24	1	379.00	379	0	94	265	11	0	0	0	0	0	1	8
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAA.............................................................................................................................	22	1	364.00	364	0	240	123	1	0	0	0	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGG...............................................................................................................................	20	1	351.00	351	0	318	31	0	0	0	1	0	0	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCC.................................................................................................................................	19	1	321.00	321	0	16	293	8	0	1	1	0	0	2	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAC............................................................................................................................	24	1	282.00	282	0	13	266	3	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAG.............................................................................................................................	23	1	218.00	218	4	58	146	7	0	0	3	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAAA............................................................................................................................	23	1	195.00	195	0	162	32	0	0	0	1	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAT.............................................................................................................................	22	1	193.00	193	0	123	67	2	0	0	1	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGC..................................................................................................................................	18	1	132.00	132	0	3	125	1	1	0	1	0	0	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGTA.............................................................................................................................	23	1	124.00	124	0	35	83	2	0	0	4	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAAT...........................................................................................................................	25	1	111.00	111	0	18	85	3	0	0	0	0	0	0	5
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGG..............................................................................................................................	22	1	103.00	103	2	38	27	30	0	3	3	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATC............................................................................................................................	24	1	103.00	103	1	5	95	2	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGA...............................................................................................................................	21	1	93.00	93	0	12	78	2	0	0	1	0	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGGA..............................................................................................................................	20	1	89.00	89	0	52	28	0	0	0	0	0	0	0	9
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAG............................................................................................................................	24	1	84.00	84	0	12	68	2	0	0	0	0	0	0	2
.................................................................................................................CGGTTCGTCCCAGGAGCAATTCT.......................................................................................................................................................................	23	1	81.00	81	0	78	1	0	0	0	2	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGT...............................................................................................................................	21	1	77.00	77	0	15	39	6	0	0	17	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGCA.............................................................................................................................	23	1	71.00	71	0	4	33	32	0	2	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATAT...........................................................................................................................	25	1	69.00	69	0	23	38	0	0	0	1	0	0	0	7
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGACA............................................................................................................................	24	1	68.00	68	1	8	45	6	1	0	1	0	0	0	6
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGTAA............................................................................................................................	24	1	59.00	59	0	20	37	2	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTT...........................................................................................................................	25	1	59.00	59	8	5	40	2	0	0	3	0	0	0	1
...........................................................................................................................................................TATTGCACTTGAGACGGCCGC...............................................................................................................................	21	1	53.00	53	0	1	50	1	0	0	1	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAAC...........................................................................................................................	25	1	51.00	51	0	2	47	0	0	0	0	0	0	0	2
............................................................................................................................................................ATTGCACTTGAGACGGCCG................................................................................................................................	19	1	37.00	37	0	32	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGCAA............................................................................................................................	24	1	33.00	33	0	2	18	13	0	0	0	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGT..............................................................................................................................	21	1	33.00	33	0	26	7	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATG............................................................................................................................	24	1	31.00	31	6	6	15	4	0	0	0	0	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGG...............................................................................................................................	19	1	30.00	30	0	24	6	0	0	0	0	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAC.............................................................................................................................	22	1	28.00	28	1	10	17	0	0	0	0	0	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGGAA.............................................................................................................................	21	1	28.00	28	0	14	14	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGGA.............................................................................................................................	23	1	28.00	28	0	13	4	11	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCG.................................................................................................................................	19	1	26.00	26	0	0	26	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATAC...........................................................................................................................	25	1	23.00	23	0	5	16	1	0	1	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGTC.............................................................................................................................	23	1	22.00	22	0	2	19	0	0	0	1	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGACC............................................................................................................................	24	1	21.00	21	1	0	20	0	0	0	0	0	0	0	0
..........................................................................................................................................................GTATTGCACTTGAGACGGCCGGA..............................................................................................................................	23	1	18.00	18	0	16	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCC................................................................................................................................	20	1	18.00	18	1	1	15	1	0	0	0	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGATA............................................................................................................................	23	1	17.00	17	0	13	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGCACTTGAGACGGCCGGA..............................................................................................................................	19	1	16.00	16	0	10	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGGAAA............................................................................................................................	22	1	16.00	16	0	12	4	0	0	0	0	0	0	0	0
.................................................................................................................CGGTTCGTCCCAGGAGCAATTC........................................................................................................................................................................	22	1	16.00	16	0	8	5	3	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATCT...........................................................................................................................	25	1	14.00	14	0	0	13	1	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTAA..........................................................................................................................	26	1	14.00	14	0	8	6	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGCC.............................................................................................................................	23	1	12.00	12	0	0	11	0	0	1	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCT.................................................................................................................................	19	1	12.00	12	0	0	12	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTTTA.........................................................................................................................	27	1	12.00	12	0	0	0	0	0	0	0	0	0	0	12
.............................................................................................................................................................TTGCACTTGAGACGGCCGGAT.............................................................................................................................	21	1	12.00	12	0	9	2	0	0	0	1	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCT................................................................................................................................	20	1	11.00	11	1	2	6	2	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGTAC............................................................................................................................	24	1	10.00	10	0	1	7	1	0	0	1	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAACT...........................................................................................................................	25	1	10.00	10	0	0	10	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAAG...........................................................................................................................	25	1	10.00	10	0	3	6	1	0	0	0	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGATT............................................................................................................................	23	1	10.00	10	0	8	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................GTATTGCACTTGAGACGGCCGGAA.............................................................................................................................	24	1	9.00	9	0	9	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTAAA.........................................................................................................................	27	1	9.00	9	2	3	3	0	0	0	1	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAG.............................................................................................................................	22	1	9.00	9	0	8	1	0	0	0	0	0	0	0	0

droEre2

ATT----------ACCATATTTATATAATTGATTATG--------------------------------------TGAATTAAG-------------TT---TGAA-GCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTT-TTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTT-TAAACAAAACATTTTAAATAAAAACTAATACTGTTATAG---GCGGT-AAAAACAGTTG-AA------A--------CCCCTAACCCTAGA----T--A--------G-TTTTTCGGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGA..............................................................................................................................	22	2	6715.50	13431	9540	694	16	247	664	121	2149
...........................................................................................................................................................TATTGCACTTGAGACGGCCGG...............................................................................................................................	21	2	1811.50	3623	2962	208	9	81	294	67	2
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAA.............................................................................................................................	23	2	1563.00	3126	2344	377	0	69	33	6	297
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAA............................................................................................................................	24	2	992.00	1984	1799	130	0	29	4	1	21
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAT.............................................................................................................................	23	2	729.50	1459	645	75	5	15	118	18	583
...........................................................................................................................................................TATTGCACTTGAGACGGCCG................................................................................................................................	20	2	418.00	836	504	45	8	16	216	45	2
............................................................................................................................................................ATTGCACTTGAGACGGCCGGA..............................................................................................................................	21	2	346.00	692	657	4	0	0	13	2	16
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGT..............................................................................................................................	22	2	163.50	327	140	14	7	6	118	32	10
............................................................................................................................................................ATTGCACTTGAGACGGCCGG...............................................................................................................................	20	2	90.00	180	168	2	0	0	8	2	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAC.............................................................................................................................	23	2	87.50	175	53	15	0	1	5	1	100
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAA.............................................................................................................................	22	2	85.50	171	157	7	0	1	1	0	5
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAAA............................................................................................................................	23	2	54.00	108	107	0	0	0	1	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGT...............................................................................................................................	21	2	42.00	84	26	0	3	1	42	12	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAT.............................................................................................................................	22	2	38.00	76	55	1	1	0	12	0	7
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATT............................................................................................................................	24	2	35.50	71	14	3	0	1	19	2	32
...........................................................................................................................................................TATTGCACTTGAGACGGCC.................................................................................................................................	19	2	30.00	60	18	14	0	1	19	8	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATA............................................................................................................................	24	2	23.50	47	33	1	0	1	3	3	6
...........................................................................................................................................................TATTGCACTTGAGACGGCCGA...............................................................................................................................	21	2	22.50	45	25	17	0	3	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAG.............................................................................................................................	23	2	21.50	43	36	2	0	1	0	0	4
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGTA.............................................................................................................................	23	2	19.00	38	14	2	1	0	10	3	8
.............................................................................................................................................................TTGCACTTGAGACGGCCGGA..............................................................................................................................	20	2	15.00	30	29	0	0	0	1	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGC..............................................................................................................................	22	2	13.00	26	7	10	1	2	1	0	5
...........................................................................................................................................................TATTGCACTTGAGACGGCCT................................................................................................................................	20	2	13.00	26	1	0	1	0	20	4	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGTT..............................................................................................................................	22	2	12.50	25	2	0	1	0	19	3	0
............................................................................................................................................................ATTGCACTTGAGACGGCCG................................................................................................................................	19	2	11.50	23	21	0	0	0	2	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGG..............................................................................................................................	22	2	9.50	19	9	0	0	4	1	0	5
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAC............................................................................................................................	24	2	9.00	18	4	12	0	1	1	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGC..................................................................................................................................	18	2	7.50	15	7	6	0	0	0	2	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGTAA............................................................................................................................	24	2	7.50	15	10	1	0	1	3	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAG............................................................................................................................	24	2	6.00	12	9	3	0	0	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGGAA.............................................................................................................................	21	2	5.50	11	10	1	0	0	0	0	0
.................................................................................................................CGGTTCGTACCAGGAGCAATTCT.......................................................................................................................................................................	23	2	5.50	11	5	0	0	0	4	2	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAAT...........................................................................................................................	25	2	5.50	11	7	1	0	1	0	0	2
.............................................................................................................................................................TTGCACTTGAGACGGCCGGAAA............................................................................................................................	22	2	4.50	9	9	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTT...........................................................................................................................	25	2	4.50	9	2	1	1	0	5	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGT..............................................................................................................................	21	2	4.00	8	5	0	0	0	3	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAAAC...........................................................................................................................	25	2	4.00	8	6	2	0	0	0	0	0
.............................................................................................................................................................TTGCACTTGAGACGGCCGGAT.............................................................................................................................	21	2	4.00	8	3	0	0	0	0	0	5
...........................................................................................................................................................TATTGCACTTGAGACGGCCA................................................................................................................................	20	2	3.50	7	2	0	0	1	4	0	0
..........................................................................................................................................................GTATTGCACTTGAGACGGCCGGA..............................................................................................................................	23	2	3.50	7	3	0	0	0	0	0	4
............................................................................................................................................................ATTGCACTTGAGACGGCCGGG..............................................................................................................................	21	2	3.50	7	7	0	0	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGAC.............................................................................................................................	22	2	3.00	6	5	0	0	0	1	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGC...............................................................................................................................	21	2	3.00	6	5	0	0	0	0	1	0
.................................................................................................................CGGTTCGTACCAGGAGCAATTC........................................................................................................................................................................	22	2	3.00	6	6	0	0	0	0	0	0
..........................................................................................................................................................GTATTGCACTTGAGACGGCCGG...............................................................................................................................	22	2	3.00	6	6	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTTT..........................................................................................................................	26	2	2.50	5	0	0	0	0	3	0	2
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGCAA............................................................................................................................	24	2	2.50	5	1	1	0	3	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGCA.............................................................................................................................	23	2	2.50	5	1	1	0	3	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTCAC.........................................................................................................................	27	2	2.50	5	0	0	0	0	0	0	5
.............................................................................................................................................................TTGCACTTGAGACGGCCGG...............................................................................................................................	19	2	2.50	5	5	0	0	0	0	0	0
..............................................................................................................................................................TGCACTTGAGACGGCCGGA..............................................................................................................................	19	2	2.00	4	2	1	0	0	0	1	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGTG.............................................................................................................................	23	2	2.00	4	0	0	0	0	1	3	0
..........................................................................................................................................................GTATTGCACTTGAGACGGCCGGAA.............................................................................................................................	24	2	2.00	4	4	0	0	0	0	0	0
............................................................................................................................................................ATTGCACTTGAGACGGCCGGATT............................................................................................................................	23	2	2.00	4	3	0	0	0	1	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATAT...........................................................................................................................	25	2	2.00	4	3	0	0	0	1	0	0
..................................................................................................................................................................CTTGAGACGGCCGGA..............................................................................................................................	15	2	1.50	3	0	0	0	0	0	0	3
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGGA.............................................................................................................................	23	2	1.50	3	0	0	0	3	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGAACT...........................................................................................................................	25	2	1.50	3	2	1	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATTC...........................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	3
...........................................................................................................................................................TATTGCACTTGAGACGGCCC................................................................................................................................	20	2	1.50	3	3	0	0	0	0	0	0
...........................................................................................................................................................TATTGCACTTGAGACGGCCGGATC............................................................................................................................	24	2	1.50	3	0	0	0	1	0	0	2
...........................................................................................................................................................TATTGCACTTGAGACGGT..................................................................................................................................	18	2	1.50	3	0	0	0	0	1	2	0

dgr_31

scaffold_15245:17564287-17564346 +

Known Ortholog

Canonical miRNA

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.5	-32.4	-32.4