dgr_286

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTTTGTTTTTGTGTTGCGTCTTTTGCCTTGCTCAGTTTGCTGCGACTGCGCGCATTTTAATTTATTGCGTTTTCGAATTTACGTTCGTTACACACGCACGCACGCACACACACGCATACGCACACGCACACAAGTGATCTCTCTTATAAGCATTGATTGAAAACGCTCTCACACTTTTTCTCTCTCCCGTTCTCTTTACAGAATAACGGTACACAGCAGTTGCAATCGCCAAGCAGCGCAGCTAGCATCGC ************************************************................((((((((((.....(((.(((.....))).)))...((........)).......(((........)))....................))))))))))...................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
...........................................................................................................................................................................................................................TTGCAATCGCCAAGCAGCGCAGC.........	23	0	1	1.00	1	1
.............................................CTGCGTGCATGTTAATTTA...........................................................................................................................................................................................	19	2	8	0.13	1	1
.................GCCTTGTGCCTTGCTCGGTT......................................................................................................................................................................................................................	20	3	13	0.08	1	1

GAAACAAAAACACAACGCAGAAAACGGAACGAGTCAAACGACGCTGACGCGCGTAAAATTAAATAACGCAAAAGCTTAAATGCAAGCAATGTGTGCGTGCGTGCGTGTGTGTGCGTATGCGTGTGCGTGTGTTCACTAGAGAGAATATTCGTAACTAACTTTTGCGAGAGTGTGAAAAAGAGAGAGGGCAAGAGAAATGTCTTATTGCCATGTGTCGTCAACGTTAGCGGTTCGTCGCGTCGATCGTAGCG ************************************************................((((((((((.....(((.(((.....))).)))...((........)).......(((........)))....................))))))))))...................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body
................................................................................................................GCGTATGCGTGTGCGTGTGT.......................................................................................................................	20	0	2	1.00	2	2

Species	Coordinate	ID	Alignment
droGri2	scaffold_15110:3766251-3766501 -	dgr_286	CTTTGTTTTTG---------TGTTG-C--GTCTTTTGCCTTGCTCAGTTTGCTGCGACTGCGCGC---------------A--------TT----T--------------------------------------------------------------------------------------------------------TA----------ATTTATTGCGTTTTCG------------------------------------AAT----------TTACGTTCGTT-------------------------------------------------------------ACACACGCACGC----------ACGC------ACAC------ACAC----------GCATACGCACAC------GCACAC--------------------------------------------AAGTG----------------ATCTCTCTTATAAGCATTGATTGA-----------------------------------------------------AAA-CGCTCTCACACTTTTTCTCT----------------------------------------------CTCC-----------C--------GTTCTCTTTACAGAATAACGGTACAC---------AGCAGTTGCAA----TCGCCAAGCAGC---------GCAGCTAGC-ATCGC
droVir3	scaffold_13049:2795462-2795691 -	dvi_18116	TGTGTCTGTTT-TA-------------------------------GGCTGGTCGCGACTGCGCGC-------------------------T----T--------------------------------------------------------------------------------------------------------TA----------ATTTATTGCGTTTTCA------------------------------------AAT----------T---------------------------------------------------------------A-----------A----------C------ACGC------ACAC------ACTCGCACACACACACATAGG------------------------------C------------------------TCAGCCACGC--------------------------------ATTGATTGATTTTGACGCTCTCACGACTTTTATTAAAC-----------------------------GGTCTCTCTCTCTC------------------------------------------------------TCGCTCTCGCTCTTTCTCT-----CT-TCTGCAGATTAACGGCACAC---------AGCAGCTTCAA----TCGCCAAGCAGC---------GCCGCCAGC-ATCGC
droMoj3	scaffold_6654:1115028-1115266 +		TTGAGTTTTTA---------CTTTA-C--GTTTT-----A-----GGCTGGTCGCGACTGCGCGC---------------------------------------------------------------------------------------------------------------------------------------TA----------ATTTATTGCGTTCTCA------------------------------------AAA----------TCA----------------------------------------------------------ACTG-------AGA------------C------ACAC------ACAC------ATTCACACATA------------CAC------AC--------ATACAGG--G------------------------ACACCGACACA------------------------------CACTGATTGATTATTACTC------------------------------------TATATTCGAAG-CGCTCTCTCACTCTCT------------------------------------------------------------CTCTCT-TCTCTACGGTCT-CTTGCAGATTAACGGTACAC---------AGCAGTTACAA----TCGCCAAGCAGC---------GCCGCGAGC-ATTGC
droWil2	scf2_1100000004909:1838546-1838760 -		TGTGGTGAATT-TT--TTTTATTCTTT--GGTTT-----G-----ATT----T------------TTAACCAA--------TTTT----------------------------------------------------------------------------------------------------------------------------------------TTGCTTA------------------------------------AAT----------T-------------------------------------------TTTTGATTACTGCATACACTA-------AACTG----------C------ACAC----ACACAC------ACAAACAAACT------CAAG------------------------------C------------------------------ATATGCAAAAG----------ATATTTATGAATAATATTAT--------TGG-----------------------------------------------------------------G----------------CTTCAGGTAAAAACGTCGTCT-------------------TCCTCTGCTA-CTCCT-------CCTTAT--------------------------------CTA----TCATC-ATCATT---------GCCATCAGC-ATCAT
dp5	XR_group8:1009817-1010073 -		TCTTTTTGAGCGGC-------------------------------GGGTGGACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGCCTATACCTCTGCGCAGCAGAAACTTA----------ATTTATTGCGTGTTGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCCACTGTTGATTAACAGAGTGGGG-----------------------------------------------------AGCCCTGCCCATGTTAAGTTAACAGAGTTGGAACTGCTTTAAACTCTGACCTGTTCTC--A----------------T-------CC------------------------------AGATCGTTCTCTGTCT-TCTCT-------CCTTGCAGAGCAACGGTACACAACAACAGCAGCAGCTTCA-------GCCCTGCAGC---------GGGGCCAGC-ATTGC
droPer2	scaffold_32:465436-465708 +		TCTTTTTGAGCGGC-------------------------------GGGTGGA-------------------------------------------------------------------------------------CGGAAGGA----CGGGTAG---ACGGGAGGGCGGGCGGCCTATACCTCTGCGCAGCAGAAACTTA----------ATTTATTGCGTGTTGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCCACTGTTGATTAACAGAGTGGGG-----------------------------------------------------AGCCCTGCCCATGTTAAGTTAACAGAGTTGGAACTGCTTTAAACTCTGACCTGTTCTC--A----------------T-------CC------------------------------AGATCGTTCTCTGTCT-TCTCT-------CCTTGCAGAGCAACGGTACACAACAACAGCAGCAGCTTCA-------GCCCTGCAGC---------GGGGCCAGC-ATTGC
droAna3	scaffold_13047:98663-98875 +		TTGCTGGTGTT----------GTTC-T-----T-----------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGTTGTTGTTGTTGTTGTACGTGCGTGCGGAATATTATGCGC-----------------------CGCGCACAAAGCACACACAC--------------------------------------------------------------------GCATAAATATACA----------------CA------CATA--TAG------AG--------ATATATG--A------------------------ATACGAACATA------------------------------CATA----------TAG----------------------------------------------------------------AGT-CCCACCTAT-ACAATCCCATCT---------------------------------------------------------------ATAAACGACGCA-------TGCCGCGATTGCGATGCGACGAT-GTTGCT---------GCGATTGTT-GTTGG
droBip1	scf7180000396434:522491-522628 -		TCCTATATTGCGTTTTTTGCGCCGCTT--TGCCC-----G-----A------------------------CATTTCTTTCGTTTT-----------------------------ATT-----------------------------------------------------------------------------------CCAT----------TTTTTTTCGACTGCTTTCCTTC------------------------------------------------------------------------------------------------------ACTT-------ACGCA----------C------ACAC----ACACAC------ACACACACACA------TACACATA--------------------------C------------------------GCATCCACACG----------------CTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT
droKik1	scf7180000302685:141564-141740 +		TTTTTTTTTTG---------TATTT-T--GTTTC-----T-----TGTTGG---------------------------------------------------------------TTT-----------------------------------------------------------------------------------TCATTGTCTTTA---CATTG-------TG----------------------------CTT------TTTG--------------------------------------------------------AT------------AA-------AACAT----------T------ACAC----ACACAC------ACACACACACA------CAAT------------------------------C--------------------GGCTGCATTCGCTTG----------------CTCTT-----------------------TCT----------------------------------------------------------------CTC-TCCGTTTGTCGCAATCCTTCTC-------------------------------------------------------------ACGCAAACG---CA-------TG--------------------CCTTTCGT---------CTCGTTCGC-ACTCT
droFic1	scf7180000453882:326772-326967 +		TATTTTTTTTG---------TTTTT-------------------------GTGTCGGCGGCACGC-----TTCT---------------TT----TTACGTCCT----------CTC-----------------------------------------------------------------------------------CTCT----------CTT----TTTTTGG------------------------------AT------TTTTGCGAAATATTCGCTCGTTATACGTTACGTATACGCCCGAG--AGACACAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTT-TGG----------------------------------------------------------------TTT-TT---------------------------------------------------------CGCCT--------TCTGCATTCACAGGTGGC-------C---------AGCGACCGTGA----TCGCG-ATCATCTCCAGCAGCAA---------CAGC
droEle1	scf7180000491046:3885089-3885239 +		CGTTGTCGCCT---------TGTTG-C--CATTGTTGTCCTGC-CATTCAGGGCTGGCTGTATGC---------------A--------TT----T--------------------------------------------------------------------------------------------------------TA----------CCATATCA-----TT------------------------------TGTGTCACA------TTAAG-----------------------------------------ATCA----------------ATTGGTAA---AC--------------------ACACAAACACACAC------ACCCGCACACACACTCGTACA--------------------------------------------------------CAT----ATA---------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------------ACGCATAC---------------------------------------------------------------GCAT
droRho1	scf7180000777097:492052-492296 +		GTTGTGTTTTT---------TTT---G--GTTTT-----CAGT-------AACGTAACCCCGGA-------------------------ATTTAA----------------------------------------------------------------------------------------------------------A----------ATCTATCACACTTTT------------------------------TGGCTTAAA------AAGAGAGTC---------------------------------------------------------TCTC-------ATGCA----------C------ACAC------ACA----TGCACAC-CA----------------CACACATACAC------ACT--CCTG--A------------------------ACATCGAA-------AGCTTTCTCTTTCTCGT-----------------------T------------------------------------------------------------------------------------------GTACAACTCTCTTTTTTCGTTTTTGCTTCTCC--------CACTCTCTGT-----CT-TTTGGGCAAAACCATTCGCC---------AGCACCCCGAA----CAGCCAAC-GGC---------GGCA----C-CTAGC
droBia1	scf7180000298389:147553-147762 +		CTTTGTTTTCG-GC-------GTCC-T--CTCTTTTATTTTATTTTATTTTATACTTCTGTGTTT---------------T--------TT----T--------------------------------------------------------------------------------------------------------T--------------TATTG-----TTG------------------------------AT------TTTTGCGAAATATTCGCTCGTTACGTATTACGTATACGCCCGAG--AGTCACAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTTTTGG----------------------------------------------------------------TTT-CT---------------------------------------------------------CGTCT--------TTTGCATTCGCAGGTGGC-------C---------AGCGACCGTGA----TCGCG-ATCATCTCCAGCAGCAGCAGCAGCAGCACC
droTak1	scf7180000415805:626219-626345 -		TTCTTTTTTTCGGA-------------------------------GGCTT----------------------------------------T----TTGC-----CTTCGCTCTT----TGTGTGTTAACTTTCACTTTTGTT--------------------------------------------------------------------------------------------TTA------------------------------TTTGCTGCGTTGAC---------------------------------------------------------ACTG--------C--G----------C------AC------ACACAC------ACTCGCACACACACACGAACGCACAC------GCACAC--------------------------------------------TCGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000407253:789582-789722 -		ATTTGTTTTTA---------TGTTT-T--TTCTT-----T-----T---------------------------------------------------GT-----TTTTGTTTTT----GGCGAGTTACTTTTTTACTTTAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTG--ATGTAGATTTTATGATT----------------AATTAAACACGCGCGACCGC----------------CCAC------ACTC----------ACATACACACAC------GCACAC--------------------------------------------GCATG----------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC
dm3	chrX:12571626-12571821 +		GTACGGCGTCG---------TGTGC----TTCTT--------------------------------------------------------T----TGACGTCCT----------CTTTTTTTA-TTTATTTTTTATTTTGGT--------------------------------------------------------------------------------------------------------------------AG------TTTTGCGAAATATGCGCTAGTT-------ACGTATACGCCCGAGCGACACACAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTTTTGG----------------------------------------------------------------CTT-TT---------------------------------------------------------CGTCT--------TTTGCATTCGCAGATGAACGATCA-------CTTGGGTGATTTCGA----TTGCAACGAGGT---------GCGCAAGGA-AATAA
droSim2	x:1086522-1086694 -		CTTTGCTTTTG---------ACTTTTTGGCTCCT-----T-------T----G------------CTAAGCAT--------TGTTTTGAATTAAT----------------------------------------------------------------------------------------------------------A----------ACTTATAT-------CG------------------------------------CT----------TT---------------TTTATAAGCGCCCGCG--GCGCACATCAATTGATT----------------TACCGGATTAGCATACCTCT------CTATAAATACACA----TGCATACATA----------------CATACATATGT------ATG--TATGAGT------------------------ATACCCATGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_4:1645603-1645705 -		TCTTGGCTTGCGAT-------TA---------T--------------TTTGCCATTAC--------------------------------------------------------TTTCCATTA-TT--------------------------------------------------------------------------TT---------ACTTTATTTCA--------------------------------------------------------------------------------------------------------ATGACTGTTTACATTA--------GCCA----------C------ACAC----ACACAT------ACGTACACTCG------CACG------------C------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC
droYak3	3R:22390745-22390918 +		TTTGTTCGTTA---------GTTC--C--GTCTT-------------------------------------------------------------------------------------------------------CAAAGAGATTTACTTGCAGTGGGCGGGTTGGTGG---------------GCGTGGCAGTTATTTT----------ACTCTTTGCCTTTTGTGTTGCTGC------------------------------------------------------------------------------------------------------ACTC-------GC--------------------ACGC------ATACATATGCATACGTA----------------CAC------ACACACACACA--CT----G--------------------CACTGGGT------G-----------------------------------------------CACTTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATG-CTCAGTGCCA----------------GAAA
droEre2	scaffold_4845:6969803-6969917 -		CTCTTTTTTTG---------TCATG-C--AGCCG-----T-----AGT----C------------GCCGCCAA--------CGCT----TT----T--------------------------------------------------------------------------------------------------------TA----------AATT--CACTTATTCA------------------------------------AAT----------TTC---------------TTTTAG-------------------------GCGA-----------------------C--------CACACACACACGC------ACAC--------------ACAC--ACACACACACAC------AC------------------------------------------------ACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

CTTTGTTTTTG---------TGTTG-C--GTCTTTTGCCTTGCTCAGTTTGCTGCGACTGCGCGC---------------A--------TT----T--------------------------------------------------------------------------------------------------------TA----------ATTTATTGCGTTTTCG------------------------------------AAT----------TTACGTTCGTT-------------------------------------------------------------ACACACGCACGC----------ACGC------ACAC------ACAC----------GCATACGCACAC------GCACAC--------------------------------------------AAGTG----------------ATCTCTCTTATAAGCATTGATTGA-----------------------------------------------------AAA-CGCTCTCACACTTTTTCTCT----------------------------------------------CTCC-----------C--------GTTCTCTTTACAGAATAACGGTACAC---------AGCAGTTGCAA----TCGCCAAGCAGC---------GCAGCTAGC-ATCGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAA----TCGCCAAGCAGC---------GCAGC..........	23	1	1.00	1	1	0

droVir3

TGTGTCTGTTT-TA-------------------------------GGCTGGTCGCGACTGCGCGC-------------------------T----T--------------------------------------------------------------------------------------------------------TA----------ATTTATTGCGTTTTCA------------------------------------AAT----------T---------------------------------------------------------------A-----------A----------C------ACGC------ACAC------ACTCGCACACACACACATAGG------------------------------C------------------------TCAGCCACGC--------------------------------ATTGATTGATTTTGACGCTCTCACGACTTTTATTAAAC-----------------------------GGTCTCTCTCTCTC------------------------------------------------------TCGCTCTCGCTCTTTCTCT-----CT-TCTGCAGATTAACGGCACAC---------AGCAGCTTCAA----TCGCCAAGCAGC---------GCCGCCAGC-ATCGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----TCGCCAAGCAGC---------GCCGCCAGC-ATCGC	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----CT-TCTGCAGATTAACGGCA...............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......TGTTT-TA-------------------------------GGCTGGTCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACGGCACAC---------AGCAGCTTCA.........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTTCAA----TCGCCAAGCAGC---------GCCGCCA........	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------AGCAGCTTCAA----TCGCCAAGCAGC---------G..............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCAA----TCGCCAAGCAGC---------...............	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA----TCGCCAAGCAGC---------GC.............	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC------------------------------------------------------TCGCTCTCGCTCTTTCTCT-----C..................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................................................C------ACGC------ACAC------ACTCGCACACACA...........................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ACGC------ACAC------ACTCGCACACACA...........................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGAGTTTTTA---------CTTTA-C--GTTTT-----A-----GGCTGGTCGCGACTGCGCGC---------------------------------------------------------------------------------------------------------------------------------------TA----------ATTTATTGCGTTCTCA------------------------------------AAA----------TCA----------------------------------------------------------ACTG-------AGA------------C------ACAC------ACAC------ATTCACACATA------------CAC------AC--------ATACAGG--G------------------------ACACCGACACA------------------------------CACTGATTGATTATTACTC------------------------------------TATATTCGAAG-CGCTCTCTCACTCTCT------------------------------------------------------------CTCTCT-TCTCTACGGTCT-CTTGCAGATTAACGGTACAC---------AGCAGTTACAA----TCGCCAAGCAGC---------GCCGCGAGC-ATTGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACAA----TCGCCAAGCAGC---------GC.............	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTACAC---------AGCAGTTACA.........................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGTACAC---------AGCAGTTACAA----TCGCC...............................	27	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC---------AGCAGTTACAA----TCGCCAAGCAGC---------...............	27	1	1.00	1	1	0	0	0	0	0

droWil2

TGTGGTGAATT-TT--TTTTATTCTTT--GGTTT-----G-----ATT----T------------TTAACCAA--------TTTT----------------------------------------------------------------------------------------------------------------------------------------TTGCTTA------------------------------------AAT----------T-------------------------------------------TTTTGATTACTGCATACACTA-------AACTG----------C------ACAC----ACACAC------ACAAACAAACT------CAAG------------------------------C------------------------------ATATGCAAAAG----------ATATTTATGAATAATATTAT--------TGG-----------------------------------------------------------------G----------------CTTCAGGTAAAAACGTCGTCT-------------------TCCTCTGCTA-CTCCT-------CCTTAT--------------------------------CTA----TCATC-ATCATT---------GCCATCAGC-ATCAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

TCTTTTTGAGCGGC-------------------------------GGGTGGACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGCCTATACCTCTGCGCAGCAGAAACTTA----------ATTTATTGCGTGTTGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCCACTGTTGATTAACAGAGTGGGG-----------------------------------------------------AGCCCTGCCCATGTTAAGTTAACAGAGTTGGAACTGCTTTAAACTCTGACCTGTTCTC--A----------------T-------CC------------------------------AGATCGTTCTCTGTCT-TCTCT-------CCTTGCAGAGCAACGGTACACAACAACAGCAGCAGCTTCA-------GCCCTGCAGC---------GGGGCCAGC-ATTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................ACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	4	0	0	0	1	0	0	0	0
...................................................ACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...............................................GTGGACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	0	1
............GC-------------------------------GGGTGGACGGGAGGGCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	1	1
...............................................GTGGACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............GC-------------------------------GGGTGGACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCA-------GCCCTGCAGC---------GG.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGGTACACAACAACAGCAG.................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GC-------------------------------GGGTGGACGGGAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........GCGGC-------------------------------GGGTGGACGGGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................GTGGACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCTTCA-------GCCCTGCA..........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGTACACAACAAC......................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................CGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGCCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................GTGGACGGGAGGGCGGGC------------------------------------------------------------------------------------------------------------GGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TCTTTTTGAGCGGC-------------------------------GGGTGGA-------------------------------------------------------------------------------------CGGAAGGA----CGGGTAG---ACGGGAGGGCGGGCGGCCTATACCTCTGCGCAGCAGAAACTTA----------ATTTATTGCGTGTTGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGCCACTGTTGATTAACAGAGTGGGG-----------------------------------------------------AGCCCTGCCCATGTTAAGTTAACAGAGTTGGAACTGCTTTAAACTCTGACCTGTTCTC--A----------------T-------CC------------------------------AGATCGTTCTCTGTCT-TCTCT-------CCTTGCAGAGCAACGGTACACAACAACAGCAGCAGCTTCA-------GCCCTGCAGC---------GGGGCCAGC-ATTGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTTTAAACTCTGACCT...............................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................A----CGGGTAG---ACGGGAGGGCGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAACGGTACACAACA........................................................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAGAGTTGGAATGA...............................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	1

droAna3

TTGCTGGTGTT----------GTTC-T-----T-----------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGTTGTTGTTGTTGTTGTACGTGCGTGCGGAATATTATGCGC-----------------------CGCGCACAAAGCACACACAC--------------------------------------------------------------------GCATAAATATACA----------------CA------CATA--TAG------AG--------ATATATG--A------------------------ATACGAACATA------------------------------CATA----------TAG----------------------------------------------------------------AGT-CCCACCTAT-ACAATCCCATCT---------------------------------------------------------------ATAAACGACGCA-------TGCCGCGATTGCGATGCGACGAT-GTTGCT---------GCGATTGTT-GTTGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................TTGTTGTTGTACGTGCGTGCGGAATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................TATTATGCGC-----------------------CGCGCACAAAGCACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................TGTTGTTGTTGTACGTGCGTGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................TTGTTGTTGTTGTTGTACGTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.TGCTGGTGTT----------GTTC-T-----T-----------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................GTTGTTGTTGTACGTGCGTGCGGAATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GTTGTTGTTGTTGTACGTGCGTGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACGACGCA-------TGCCGCGATTGCGA........................................	26	1	1.00	1	1	0	0	0	0	0
TTGCTGGTGTT----------GTTC-T-----T-----------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................TTGTTGTTGTTGTACGTGCGTGCGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GTTGTTGTTGTTGTACGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAACATA------------------------------CATA----------TAG----------------------------------------------------------------AGT-CCCACCT.......................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G--A------------------------ATACGAACATA------------------------------CAAT----------.....................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	1	0	0

droBip1

TCCTATATTGCGTTTTTTGCGCCGCTT--TGCCC-----G-----A------------------------CATTTCTTTCGTTTT-----------------------------ATT-----------------------------------------------------------------------------------CCAT----------TTTTTTTCGACTGCTTTCCTTC------------------------------------------------------------------------------------------------------ACTT-------ACGCA----------C------ACAC----ACACAC------ACACACACACA------TACACATA--------------------------C------------------------GCATCCACACG----------------CTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTTTTTTTTG---------TATTT-T--GTTTC-----T-----TGTTGG---------------------------------------------------------------TTT-----------------------------------------------------------------------------------TCATTGTCTTTA---CATTG-------TG----------------------------CTT------TTTG--------------------------------------------------------AT------------AA-------AACAT----------T------ACAC----ACACAC------ACACACACACA------CAAT------------------------------C--------------------GGCTGCATTCGCTTG----------------CTCTT-----------------------TCT----------------------------------------------------------------CTC-TCCGTTTGTCGCAATCCTTCTC-------------------------------------------------------------ACGCAAACG---CA-------TG--------------------CCTTTCGT---------CTCGTTCGC-ACTCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATTTTTTTTG---------TTTTT-------------------------GTGTCGGCGGCACGC-----TTCT---------------TT----TTACGTCCT----------CTC-----------------------------------------------------------------------------------CTCT----------CTT----TTTTTGG------------------------------AT------TTTTGCGAAATATTCGCTCGTTATACGTTACGTATACGCCCGAG--AGACACAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTT-TGG----------------------------------------------------------------TTT-TT---------------------------------------------------------CGCCT--------TCTGCATTCACAGGTGGC-------C---------AGCGACCGTGA----TCGCG-ATCATCTCCAGCAGCAA---------CAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGTTGTCGCCT---------TGTTG-C--CATTGTTGTCCTGC-CATTCAGGGCTGGCTGTATGC---------------A--------TT----T--------------------------------------------------------------------------------------------------------TA----------CCATATCA-----TT------------------------------TGTGTCACA------TTAAG-----------------------------------------ATCA----------------ATTGGTAA---AC--------------------ACACAAACACACAC------ACCCGCACACACACTCGTACA--------------------------------------------------------CAT----ATA---------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------------ACGCATAC---------------------------------------------------------------GCAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTTGTGTTTTT---------TTT---G--GTTTT-----CAGT-------AACGTAACCCCGGA-------------------------ATTTAA----------------------------------------------------------------------------------------------------------A----------ATCTATCACACTTTT------------------------------TGGCTTAAA------AAGAGAGTC---------------------------------------------------------TCTC-------ATGCA----------C------ACAC------ACA----TGCACAC-CA----------------CACACATACAC------ACT--CCTG--A------------------------ACATCGAA-------AGCTTTCTCTTTCTCGT-----------------------T------------------------------------------------------------------------------------------GTACAACTCTCTTTTTTCGTTTTTGCTTCTCC--------CACTCTCTGT-----CT-TTTGGGCAAAACCATTCGCC---------AGCACCCCGAA----CAGCCAAC-GGC---------GGCA----C-CTAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTTTGTTTTCG-GC-------GTCC-T--CTCTTTTATTTTATTTTATTTTATACTTCTGTGTTT---------------T--------TT----T--------------------------------------------------------------------------------------------------------T--------------TATTG-----TTG------------------------------AT------TTTTGCGAAATATTCGCTCGTTACGTATTACGTATACGCCCGAG--AGTCACAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTTTTGG----------------------------------------------------------------TTT-CT---------------------------------------------------------CGTCT--------TTTGCATTCGCAGGTGGC-------C---------AGCGACCGTGA----TCGCG-ATCATCTCCAGCAGCAGCAGCAGCAGCACC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCTTTTTTTCGGA-------------------------------GGCTT----------------------------------------T----TTGC-----CTTCGCTCTT----TGTGTGTTAACTTTCACTTTTGTT--------------------------------------------------------------------------------------------TTA------------------------------TTTGCTGCGTTGAC---------------------------------------------------------ACTG--------C--G----------C------AC------ACACAC------ACTCGCACACACACACGAACGCACAC------GCACAC--------------------------------------------TCGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATTTGTTTTTA---------TGTTT-T--TTCTT-----T-----T---------------------------------------------------GT-----TTTTGTTTTT----GGCGAGTTACTTTTTTACTTTAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTG--ATGTAGATTTTATGATT----------------AATTAAACACGCGCGACCGC----------------CCAC------ACTC----------ACATACACACAC------GCACAC--------------------------------------------GCATG----------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTACGGCGTCG---------TGTGC----TTCTT--------------------------------------------------------T----TGACGTCCT----------CTTTTTTTA-TTTATTTTTTATTTTGGT--------------------------------------------------------------------------------------------------------------------AG------TTTTGCGAAATATGCGCTAGTT-------ACGTATACGCCCGAGCGACACACAGAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTTTTGG----------------------------------------------------------------CTT-TT---------------------------------------------------------CGTCT--------TTTGCATTCGCAGATGAACGATCA-------CTTGGGTGATTTCGA----TTGCAACGAGGT---------GCGCAAGGA-AATAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA----TTGCAACGAGGT---------GCGCAAGGA-AA...	27	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCA-------CTTGGGTGATTTCGA----TTGCAAC.............................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAACGAGGT---------GCGCAA.........	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGATTTCGA----TTGCAACGAGG.........................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGA----TTGCAACGAGGT---------GCGCAAG........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTTTATTTTGGT--------------------------------------------------------------------------------------------------------------------AG------TTTTGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGT---------GCGCAAGGA-AA...	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TTTGCATTCGCAGATGAACGATCA-------CT.....................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTCGA----TTGCAACGAGGT---------GC.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CTTGGGTGATTTCGA----TTGCAACG............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TA-TTTATTTTTTATTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TGACGTCCT----------CTTTTTTTT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CTTTGCTTTTG---------ACTTTTTGGCTCCT-----T-------T----G------------CTAAGCAT--------TGTTTTGAATTAAT----------------------------------------------------------------------------------------------------------A----------ACTTATAT-------CG------------------------------------CT----------TT---------------TTTATAAGCGCCCGCG--GCGCACATCAATTGATT----------------TACCGGATTAGCATACCTCT------CTATAAATACACA----TGCATACATA----------------CATACATATGT------ATG--TATGAGT------------------------ATACCCATGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................AATTGATT----------------TACCGGATTAGCATACCTC...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CATCAATTGATT----------------TACCGGATTAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................T----G------------CTAAGCAT--------TGTTTTGAATTAAT----------------------------------------------------------------------------------------------------------A----------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TGATT----------------TACCGGATTAGCATACCTCT------............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................T-----T-------T----G------------CTAAGCAT--------TGTTTTGAATTAAT----------------------------------------------------------------------------------------------------------A----------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TCTTGGCTTGCGAT-------TA---------T--------------TTTGCCATTAC--------------------------------------------------------TTTCCATTA-TT--------------------------------------------------------------------------TT---------ACTTTATTTCA--------------------------------------------------------------------------------------------------------ATGACTGTTTACATTA--------GCCA----------C------ACAC----ACACAT------ACGTACACTCG------CACG------------C------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TTTGTTCGTTA---------GTTC--C--GTCTT-------------------------------------------------------------------------------------------------------CAAAGAGATTTACTTGCAGTGGGCGGGTTGGTGG---------------GCGTGGCAGTTATTTT----------ACTCTTTGCCTTTTGTGTTGCTGC------------------------------------------------------------------------------------------------------ACTC-------GC--------------------ACGC------ATACATATGCATACGTA----------------CAC------ACACACACACA--CT----G--------------------CACTGGGT------G-----------------------------------------------CACTTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATG-CTCAGTGCCA----------------GAAA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CTCTTTTTTTG---------TCATG-C--AGCCG-----T-----AGT----C------------GCCGCCAA--------CGCT----TT----T--------------------------------------------------------------------------------------------------------TA----------AATT--CACTTATTCA------------------------------------AAT----------TTC---------------TTTTAG-------------------------GCGA-----------------------C--------CACACACACACGC------ACAC--------------ACAC--ACACACACACAC------AC------------------------------------------------ACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dgr_286

scaffold_15110:3766301-3766451 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads