dgr_27

GGTTTGTTTTTCTTGTAGATGAAATGGATTTAATAAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTCTGAGTTTGCCAAGTGGCATTCAGCCCCTGGACGCTAGAGATGGCCAACTGAAAAGCAACCTAAAAACAATCACAGTTAAAAGTTAAAGA *********************************..(((((((...(((...(((.((.(((((.(((((((..............)))))))))))).)).)))...)))...)))))))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
..................................................CATCGTGCACGGGTTTGAGTGT..........................................................................................	22	0	1	61.00	61	41	20
..................................................CATCGTGCACGGGTTTGAGTG...........................................................................................	21	0	1	55.00	55	44	11
..................................................CATCGTGCACGGGTTTGAGT............................................................................................	20	0	1	20.00	20	16	4
..................................................CATCGTGCACGGGTTTGAGTGTC.........................................................................................	23	0	1	6.00	6	5	1
...................................................ATCGTGCACGGGTTTGAGTG...........................................................................................	20	0	1	3.00	3	1	2
.....................................................................................GAGGTATTCAGCCCCAGGACG........................................................	21	3	4	2.50	10	0	10
..................................................CATCGTGCACGGGTTTGAGTGA..........................................................................................	22	1	1	2.00	2	2	0
........................................................................................GTATTCAGCCCCAGGACG........................................................	18	2	1	2.00	2	0	2
.......................................................................................GGTATTCAGCCCCAGGACG........................................................	19	2	1	2.00	2	0	2
...................................................ATCGTGCACGGGTTTGAGTGT..........................................................................................	21	0	1	2.00	2	0	2
..................................................CAACGTGCACGGGTTTGAGT............................................................................................	20	1	1	2.00	2	2	0
..................................................CATCGTGCACGGGTTTGAGTGTCT........................................................................................	24	0	1	2.00	2	1	1
..................................................CATCGTGCCCGGGTTTGAGTG...........................................................................................	21	1	1	1.00	1	1	0
..................................................TATCGTGCACGGGTTTGAGTGT..........................................................................................	22	1	1	1.00	1	1	0
..................................................CATAGTGCACGGGTTTGAGTGT..........................................................................................	22	1	1	1.00	1	1	0
..................................................CATCGAGCACGGGTTTGAGT............................................................................................	20	1	1	1.00	1	1	0
..................................................CATCGTGCACGGGTTTGCGTGT..........................................................................................	22	1	1	1.00	1	1	0
..................................................CATCGTGCACGGGTTTGAGTGTT.........................................................................................	23	1	1	1.00	1	0	1
.........................................................................................CATTCAGCCCCTGGACGCTAGA...................................................	22	0	1	1.00	1	0	1
..................................................CATCGTGCACGGGTTTGAATG...........................................................................................	21	1	1	1.00	1	1	0
..................................................CATCGTGCACGGGTTTGAGTGTCA........................................................................................	24	1	1	1.00	1	1	0
..................................................CATCGTGCGCGGGTTTGAGTG...........................................................................................	21	1	1	1.00	1	1	0
..................................................CACCGTGCACGGGTTTGAGTG...........................................................................................	21	1	1	1.00	1	1	0
..................................................CATCGCGCACGGGTTTGAGTG...........................................................................................	21	1	1	1.00	1	1	0
...................................................ATCGTGCACGGGTTTGAGTGTC.........................................................................................	22	0	1	1.00	1	1	0
..................................................CATCGTGCATGGGTTTGAGTG...........................................................................................	21	1	1	1.00	1	1	0
.....................................................CGTGCACGGGTTTGAGTGT..........................................................................................	19	0	1	1.00	1	0	1
..................................................CATCGTGCACCGGTTTGAGTGT..........................................................................................	22	1	1	1.00	1	1	0
..................................................CATCGTACACGGGTTTGAGTGT..........................................................................................	22	1	1	1.00	1	1	0
..................................................CATCGTGCACGGGTTTGGGTG...........................................................................................	21	1	1	1.00	1	1	0
.................................................CCATCGTGCACGGGTTTGAGT............................................................................................	21	0	1	1.00	1	0	1
...................................................ATGGTGCACGGGTTTGAGT............................................................................................	19	1	1	1.00	1	1	0
......................................................................................AGGTATTCAGCCCCAGGACG........................................................	20	3	5	0.80	4	1	3
.....................................................................................GAGGTATTCAGCCCCAGGAC.........................................................	20	3	5	0.40	2	0	2
.......................................................................................GGTATTCAGCCCCAGGACGG.......................................................	20	3	4	0.25	1	0	1
......................................................................................AGGTATTCAGCCCCAGGAC.........................................................	19	3	10	0.20	2	0	2
........................................................................................GTATTCAGCCCCAGGACGG.......................................................	19	3	6	0.17	1	0	1
.......................................................................................TGTATTCAGCCCCAGGACG........................................................	19	3	9	0.11	1	0	1

CCAAACAAAAAGAACATCTACTTTACCTAAATTATTTCCAACCGCTTGAGGTAGCACGTGCCCAAACTCACAGACTCAAACGGTTCACCGTAAGTCGGGGACCTGCGATCTCTACCGGTTGACTTTTCGTTGGATTTTTGTTAGTGTCAATTTTCAATTTCT **********************************..(((((((...(((...(((.((.(((((.(((((((..............)))))))))))).)).)))...)))...)))))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
.....................................................................................CTCCATAAGTCGGGGTCCTGC........................................................	21	3	4	3.25	13	11	2
......................................................................................TCCATAAGTCGGGGTCCTGC........................................................	20	3	5	0.20	1	1	0
.......................................................................................................................................TTGTGTTAGTATCAATTATCA......	21	3	14	0.07	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15110:657034-657195 +	dgr_27	candidate-rescued	GGTTT-----GTTT--------TTCTTG-------TAG-------ATGAAA-----TGGA--------------------T-TTAA-TAAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAAC-AA--T-CA-----------C-AGTTAA-----AAGTTAAA--GA
droVir3	scaffold_12758:855541-855689 -	dvi-mir-955	Known_mirbase	GGTAT-----GTAT----------GG-------------------------------------------------A----T-C-TCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACT-AAT--A-CGGG-TTGGGGCA--------A------GCCAAA--GA
droMoj3	scaffold_6680:1909618-1909763 -	dmo_71	confident	GGTAT-----GTAT----------CGATTCTTATTTGACTCGAATCTCA-----GGTATC---------------C--------AA-TATGGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAA-------------------------------------------------
droWil2	scf2_1100000004511:10215722-10215851 +	dwi_5439		TATTATTCAAATACTTT----TGCGT-T-------A------------------------------------------------------AGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAA------------------------------------------------
dp5	XR_group8:3253007-3253048 -			TTTCC-----ATCT----------GG-G-------TGG-------TTGG-----G--------------------------------------------------GTCCTGCAGGGGTTTGAGGGTC-----------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_11:1838070-1838083 +			AATAT-----GTAT----------TTTT-------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13337:7606405-7606565 +	dan_53	confident	TTTAA-----T----------TTTCCTG-------AGG-------GTGA-----------------AGGATG---T----T-T-TTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TT-TTAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATACAG-AAA-A-CA-----------T-A-----ATCCAAAA----AAAGT
droBip1	scf7180000395543:273547-273686 +			TTTAA-----T----------TGTGTTG-------AAG-------GTGAAG----------------GCTGT---T----T-T-TTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTC-TAT---TTTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAA----------------------------------------------
droKik1	scf7180000302391:414317-414461 +			GTTG-----------------TTTGCTT-------TGTGTAG--------CTAAAATTGA---------ATT-CGA----C-A-TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAA------------------------------------------------
droFic1	scf7180000454105:1620287-1620449 +			TTTT------G----------CT------------TGAGTGG---GTGA-----AGCAAC---------------C----T-T-TTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATAT-AT--A-CA-----------CTA----AATGC-TATTT---GAGC
droEle1	scf7180000491249:1960481-1960651 -			AATTT-----G----------TTTGACT-------TAGGTGG--------GTAAAATTATTGTGG-AAGGTA---T----T-T-GTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGAT--------CA------AAATT--------A------CATAAA--CA
droRho1	scf7180000757703:631-821 -			ATTTT-----GTTA-AAGTTGTTTGATT-------TAGATGG--------GTAAAATTAT---TATTTAAAA---A----T-T-TCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACAT-CTATT-CGAAATTTAGATT--------A------CCTAAA-TGA
droBia1	scf7180000302428:2658363-2658527 +			GTTTT-----ATATT------TTTGCCT-------AAGGTGG--------GTAGAATAATAATTACAGGATTT-GCTTTTC-G-TTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAA-----------------------------------------------
droTak1	scf7180000415378:64784-64966 -			GATAT-----G-ATCTT----TGCGT-T-------AAGGTGG--------GTAGAATAAT---TACAGGGTA---TTTTTTGT-TTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATA-AAT--T-CC------------TA----ATT-----CCTAAAAATT
droEug1	scf7180000409466:1024682-1024847 +			AATTT-----TTTG--------GGATTG-------TAG-------TTGGGATA-TTTT----------------------A-T-TTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGAC-TTAAT-CAAACTT-------------------TAGTTAAG--AA
dm3	chr3L:3299009-3299182 +	dme-mir-955	Known_mirbase	AAATT-----G----------TTTGATG-------TAG-------GTGGGGTAAAATAGG---TAAGGAACA---C----T-T-TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAAC-AA---TTT------------T-ATCTTA-----TAGTT--G--AA
droSim2	3l:3195995-3196148 +	dsi-mir-955	Known_mirbase	AAATT-----G----------TTTGATG-------TAG-------GTGGGGTAAAATAGG---TAAAGAACT---C----T-T-TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGA----------------------------------------------
droSec2	scaffold_2:3291312-3291462 +			AAATT-----G----------TTTGATG-------TAG-------GTGGGGTAAAATAGG---TAATAAACA---C----T-T-TTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAA----------------------------------------------
droYak3	3L:3844719-3844859 +	dya_46	confident	GTTG-----------------TTTGCTA-------TAGGCGG--------GTAAAATAAG---TAA------------------AGTAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAA-----------------------------------------------
droEre2	scaffold_4784:5981962-5982132 +	der_1541		TTTG-----------------TGTGCTA-------TAATTGG--------GTAAAATAAG---AAGGAATAC---A----C-T-TTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGC-AA---GTA------------TTA-ATTA-----TGGTC--A--AA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GGTTT-----GTTT--------TTCTTG-------TAG-------ATGAAA-----TGGA--------------------T-TTAA-TAAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAAC-AA--T-CA-----------C-AGTTAA-----AAGTTAAA--GA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................CATCGTGCACGGGTTTGAGTGT........................................................................................................................	22	1	61.00	61	20	41
........................................................................................................CATCGTGCACGGGTTTGAGTG.........................................................................................................................	21	1	55.00	55	11	44
........................................................................................................CATCGTGCACGGGTTTGAGT..........................................................................................................................	20	1	20.00	20	4	16
........................................................................................................CATCGTGCACGGGTTTGAGTGTC-......................................................................................................................	23	1	6.00	6	1	5
.........................................................................................................ATCGTGCACGGGTTTGAGTG.........................................................................................................................	20	1	3.00	3	2	1
........................................................................................................CATCGTGCACGGGTTTGAGTGA........................................................................................................................	22	1	2.00	2	0	2
.........................................................................................................ATCGTGCACGGGTTTGAGTGT........................................................................................................................	21	1	2.00	2	2	0
........................................................................................................CATCGTGCACGGGTTTGAGTGTC-T.....................................................................................................................	24	1	2.00	2	1	1
........................................................................................................CATCGTGCACGGGTTTGAGTGTT-......................................................................................................................	23	1	1.00	1	1	0
.....................................................................................................................................................CATTCAGCCCCTGGACGCTAGA...........................................................................	22	1	1.00	1	1	0
........................................................................................................CATCGTGCACGGGTTTGAGTGTC-A.....................................................................................................................	24	1	1.00	1	0	1
.........................................................................................................ATCGTGCACGGGTTTGAGTGTC-......................................................................................................................	22	1	1.00	1	0	1
...........................................................................................................CGTGCACGGGTTTGAGTGT........................................................................................................................	19	1	1.00	1	1	0
.......................................................................................................CCATCGTGCACGGGTTTGAGT..........................................................................................................................	21	1	1.00	1	1	0

droVir3

GGTAT-----GTAT----------GG-------------------------------------------------A----T-C-TCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACT-AAT--A-CGGG-TTGGGGCA--------A------GCCAAA--GA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................CATCGTGCACAGGTTTGAGTGT........................................................................................................................	22	1	108.00	108	0	0	1	3	2	3	2	0	1	1	0	0	0	0	4	1	3	2	2	1	4	1	10	2	1	0	1	2	15	1	5	8	0	2	0	0	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	13	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-......................................................................................................................	23	1	90.00	90	1	0	1	13	1	0	1	0	0	0	0	0	0	0	1	0	0	3	2	0	0	0	2	0	0	0	0	0	2	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	44	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-T.....................................................................................................................	24	1	17.00	17	0	0	1	1	0	0	0	0	0	0	0	0	0	0	2	1	0	3	2	1	0	2	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAACCTTTGAACGGTAGA...........................................................................	22	1	17.00	17	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTG.........................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGT..........................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAACCTTTGAACGG...............................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAG...........................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-C.....................................................................................................................	24	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CCATCGTGCACAGGTTTGAGTGT........................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTC-......................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCAACCTTTGAACGGTAGAG..........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GTGCACAGGTTTGAGTGT........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-CT....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-AT....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-A.....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-AA....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TCTCATCAGTTAGCTAGCTC..............................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGA............................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ATTCAACCTTTGAACGGTAGA...........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGA...........................................................................	39	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAACCTTTGAACGGTAG............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGA........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCAACCTTTGAACGGTAGA...........................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCAACCTTTGAACGGTAGAGA.........................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGTAT-----GTAT----------CGATTCTTATTTGACTCGAATCTCA-----GGTATC---------------C--------AA-TATGGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAA-------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-......................................................................................................................	23	1	467.00	467	8	176	0	2	259	22
.....................................................................................................................................................CATTCAGCCTTTGAACGGTAGA...........................................................................	22	1	128.00	128	4	14	0	0	106	4
........................................................................................................CATCGTGCACAGGTTTGAGTGT........................................................................................................................	22	1	87.00	87	12	11	5	12	10	37
........................................................................................................CATCGTGCACAGGTTTGAGTGTC-......................................................................................................................	23	1	42.00	42	0	0	0	0	42	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-T.....................................................................................................................	24	1	13.00	13	1	2	1	3	0	6
....................................................................................AA-TATGGGTTAGCGAGCTC..............................................................................................................................................	19	1	8.00	8	0	1	0	0	7	0
........................................................................................................CATCGTGCACAGGTTTGAGTGC........................................................................................................................	22	1	7.00	7	0	0	0	0	7	0
........................................................................................................CATCGTGCACAGGTTTGAGTG.........................................................................................................................	21	1	5.00	5	3	1	0	0	1	0
........................................................................................................CATCGTGCACAGGTTTGAGT..........................................................................................................................	20	1	3.00	3	1	1	0	0	0	1
........................................................................................................CATCGTGCACAGGTTTGAGTGAC-......................................................................................................................	23	1	3.00	3	0	0	0	0	3	0
.....................................................................................................................................................CATTCAGCCTTTGAACGGTAG............................................................................	21	1	2.00	2	1	0	0	0	1	0
...........................................................................C--------AA-TATGGGTTAGCGAGCTC..............................................................................................................................................	20	1	2.00	2	0	1	0	0	1	0
.......................................................................................................CCATCGTGCACAGGTTTGAGTGTT-......................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---G...............................................................................................................	27	1	1.00	1	0	1	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAG...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-TC....................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................ATTCAGCCTTTGAACGGTAGA...........................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTA-......................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................................ATCGTGCACAGGTTTGAGTGT........................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---T...............................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................................................A-TATGGGTTAGCGAGCTC..............................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................CATTCAGCCTTTGAACGGTAGAA..........................................................................	23	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................ATTCAGCCTTTGAACGGTAGG...........................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT....................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................CATCGTGCACAGGTTTGAGTGTT-C.....................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................ATTCAGCCTTTGAACGGTAGAA..........................................................................	22	1	1.00	1	0	0	0	0	1	0
...........................................................C---------------C--------AA-TATGGGTTAGCGAGCTC..............................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................ATCGTGCACAGGTTTGAGTGTT-......................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..........................................................TC---------------C--------AA-TATGGGTTAGCGAGCTC..............................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................CCATCGTGCACAGGTTTGAGTGTC-......................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
............................................................................................................GTGCACAGGTTTGAGTGTT-......................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droWil2

TATTATTCAAATACTTT----TGCGT-T-------A------------------------------------------------------AGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAA------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................CATCGTGCTTAGGTTTGAGTGTC.......................................................................................................................	23	1	674.00	674	7	1	2	653	11
........................................................................................................CATCGTGCTTAGGTTTGAGTGT........................................................................................................................	22	1	119.00	119	32	3	2	68	14
........................................................................................................CATCGTGCTTAGGTTTGAGTG.........................................................................................................................	21	1	42.00	42	10	1	1	28	2
........................................................................................................CATCGTGCTTAGGTTTGAGTGTCT......................................................................................................................	24	1	30.00	30	15	1	0	10	4
.....................................................................................................................................................CATTCAACCTTGGAGCGATAGA...........................................................................	22	1	9.00	9	0	0	0	9	0
.........................................................................................................ATCGTGCTTAGGTTTGAGTGTC.......................................................................................................................	22	1	5.00	5	0	0	0	5	0
........................................................................................................CATCGTGCTTAGGTTTGAGTGTCC......................................................................................................................	24	1	4.00	4	2	0	0	2	0
........................................................................................................CATCGTGCTTAGGTTTGAGTGTCA......................................................................................................................	24	1	3.00	3	0	0	0	2	1
........................................................................................................CATCGTGCTTAGGTTTGAGTGC........................................................................................................................	22	1	3.00	3	3	0	0	0	0
.........................................................................................................ATCGTGCTTAGGTTTGAGTGT........................................................................................................................	21	1	2.00	2	0	0	0	1	1
............................................................................................................GTGCTTAGGTTTGAGTGTC.......................................................................................................................	19	1	2.00	2	0	0	0	2	0
........................................................................................................CATCGTGCTTAGGTTTGAGT..........................................................................................................................	20	1	2.00	2	0	0	0	2	0
........................................................................................................CATCGTGCTTAGGTTTGAGTGG........................................................................................................................	22	1	2.00	2	2	0	0	0	0
.........................................................................................................ATCGTGCTTAGGTTTGAGTGTCT......................................................................................................................	23	1	2.00	2	0	0	0	1	1
........................................................................................................CATCGTGCTTAGGTTTGAGTGTCAA.....................................................................................................................	25	1	2.00	2	0	0	0	2	0
............................................................................................................GTGCTTAGGTTTGAGTGT........................................................................................................................	18	1	1.00	1	0	0	0	0	1
.....................................................................................................................................................CATTCAACCTTGGAGCGATAG............................................................................	21	1	1.00	1	0	0	0	1	0
........................................................................................................CATCGTGCTTAGGTTTGAGTGTT.......................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................................................................................................................................................TGGCATTCAACCTTGGAGCGATA.............................................................................	23	1	1.00	1	0	0	0	1	0
........................................................................................................CATCGTGCTTAGGTTTGAG...........................................................................................................................	19	1	1.00	1	0	0	1	0	0
................................................................................................................................................A-TGGCATTCAACCTTGGAGCGATAGAA..........................................................................	27	1	1.00	1	0	0	0	1	0
........................................................................................................CATCGTGCTTAGGTTTGAGTGTA.......................................................................................................................	23	1	1.00	1	0	1	0	0	0
.......................................................................................................CCATCGTGCTTAGGTTTGAGTG.........................................................................................................................	22	1	1.00	1	0	0	0	1	0
......................................................................................................................................................ATTCAACCTTGGAGCGATAGA...........................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................CCATCGTGCTTAGGTTTGAGTGTC.......................................................................................................................	24	1	1.00	1	0	0	0	1	0
........................................................................................................CATCGTGCTTAGGTTTGAGTGTCG......................................................................................................................	24	1	1.00	1	1	0	0	0	0

dp5

TTTCC-----ATCT----------GG-G-------TGG-------TTGG-----G--------------------------------------------------GTCCTGCAGGGGTTTGAGGGTC-----------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022

Male-body

M040

Female-body

M059

Embryo

M062

Head

V043

Embryo

V051

Head

V112

Male-body

SRR902010

Ovary

SRR902011

Testis

SRR902012

CNS imaginal disc

No Reads

droPer2

AATAT-----GTAT----------TTTT-------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TTTAA-----T----------TTTCCTG-------AGG-------GTGA-----------------AGGATG---T----T-T-TTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TT-TTAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATACAG-AAA-A-CA-----------T-A-----ATCCAAAA----AAAGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	23	1	158.00	158	13	85	13	8	21	18
........................................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................	22	1	149.00	149	12	13	3	19	62	40
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	24	1	57.00	57	4	16	6	2	16	13
........................................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................	21	1	48.00	48	4	3	2	2	21	16
.....................................................................................................................................................CATTCAACCTTTGGACGGTAGA...........................................................................	22	1	33.00	33	7	19	1	1	4	1
........................................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................	20	1	12.00	12	2	1	0	3	5	1
..........................................................................................................TCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	22	1	8.00	8	7	0	0	0	0	1
.......................................................................................................................................................TTCAACCTTTGGACGGTAGAG..........................................................................	21	1	8.00	8	3	1	0	0	4	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGC........................................................................................................................	22	1	7.00	7	0	6	0	1	0	0
.....................................................................................................................................................CATTCAACCTTTGGACGGTAG............................................................................	21	1	6.00	6	4	1	0	1	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................	23	1	6.00	6	0	0	0	1	3	2
.......................................................................................................................................................TTCAACCTTTGGACGGTAGAGT.........................................................................	22	1	5.00	5	1	2	0	1	1	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................	24	1	3.00	3	0	3	0	0	0	0
.......................................................................................................CCATCGTGCAGAGGTTTGAGTGT........................................................................................................................	23	1	3.00	3	1	0	0	0	1	1
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	23	1	3.00	3	0	0	0	0	0	3
.......................................................................................................................................................TTCAACCTTTGGACGGTAGAGA.........................................................................	22	1	2.00	2	0	1	0	0	0	1
.........................................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................	20	1	2.00	2	1	0	0	0	1	0
......................................................................................................................................................ATTCAACCTTTGGACGGTAGA...........................................................................	21	1	2.00	2	1	1	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTT.........................................................................................................................	21	1	2.00	2	0	0	1	0	1	0
..........................................................................................................TCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................TTCAACCTTTGGACGGTAGA...........................................................................	20	1	1.00	1	0	0	0	1	0	0
........................................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................TCAACCTTTGGACGGTAGAG..........................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................CGCATTCAACCTTTGGACGGTAGTT..........................................................................	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................ATTCAACCTTTGGACGGTAGAGT.........................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................CGCATTCAACCTTTGGACGGTAG............................................................................	23	1	1.00	1	0	0	1	0	0	0
.......................................................................................................CCATCGTGCAGAGGTTTGAGT..........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTA.........................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................CATTCAACCTTTGGACGGTAGT...........................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................T-T-TTTGAGAAGCTCATCAGCTC..............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAT...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................ATTCAACCTTTGGACGGTAGAG..........................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCTA.....................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................TTCAACCTTTGGACGGTAGTTT.........................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................CATTCAACCTTTGGACGGTTTT...........................................................................	22	3	0.33	1	1	0	0	0	0	0

droBip1

TTTAA-----T----------TGTGTTG-------AAG-------GTGAAG----------------GCTGT---T----T-T-TTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTC-TAT---TTTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAA----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTTG-----------------TTTGCTT-------TGTGTAG--------CTAAAATTGA---------ATT-CGA----C-A-TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAA------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTT------G----------CT------------TGAGTGG---GTGA-----AGCAAC---------------C----T-T-TTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATAT-AT--A-CA-----------CTA----AATGC-TATTT---GAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATTT-----G----------TTTGACT-------TAGGTGG--------GTAAAATTATTGTGG-AAGGTA---T----T-T-GTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGAT--------CA------AAATT--------A------CATAAA--CA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTTT-----GTTA-AAGTTGTTTGATT-------TAGATGG--------GTAAAATTAT---TATTTAAAA---A----T-T-TCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACAT-CTATT-CGAAATTTAGATT--------A------CCTAAA-TGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTTTT-----ATATT------TTTGCCT-------AAGGTGG--------GTAGAATAATAATTACAGGATTT-GCTTTTC-G-TTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAA-----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATAT-----G-ATCTT----TGCGT-T-------AAGGTGG--------GTAGAATAAT---TACAGGGTA---TTTTTTGT-TTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATA-AAT--T-CC------------TA----ATT-----CCTAAAAATT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AATTT-----TTTG--------GGATTG-------TAG-------TTGGGATA-TTTT----------------------A-T-TTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGAC-TTAAT-CAAACTT-------------------TAGTTAAG--AA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAATT-----G----------TTTGATG-------TAG-------GTGGGGTAAAATAGG---TAAGGAACA---C----T-T-TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAAC-AA---TTT------------T-ATCTTA-----TAGTT--G--AA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	23	1	1904.00	1904	0	0	0	0	0	1	0	0	1	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	3	0	0	4	2	1	2	2	0	3	1	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	5	5	9	6	3	0	14	2	17	1	0	9	21	23	2	0	0	0	0	0	0	3	0	1	28	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	4	1	1	1	5	3	44	1	4	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	4	4	1	0	0	8	0	0	1	3	0	2	0	0	0	1	0	0	6	2	13	3	9	0	0	1	1	7	29	0	0	0	0	0	1	2	0	0	0	0	0	0	0	3	0	12	84	3	38	0	0	8	10	1	1	0	0	2	0	2	0	0	0	0	0	271	127	1	1	0	0	0	0	0	1	0	0	1	0	0	2	8	3	35	0	3	5	0	0	0	0	0	0	0	4	1	0	0	2	0	2	1	11	0	1	1	0	0	1	0	1	1	14	33	10	9	10	504	7	2	3	2	0	0	2	9	9	0	12	14	0	2	1	7	1	5	3	4	1	0	1	57	4	1	1	0	6	5	11	6	50	15	7	1	1	0	47	7	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................	22	1	1634.00	1634	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	2	0	0	2	3	1	0	3	1	1	1	0	4	5	0	0	0	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	5	3	1	0	5	2	22	2	2	21	18	8	1	0	0	0	0	0	0	1	1	0	15	0	0	1	0	2	0	0	0	1	1	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	3	4	3	1	45	4	0	2	1	0	0	0	0	0	0	0	0	0	0	0	3	2	0	2	0	0	2	1	2	4	0	2	0	8	0	0	0	0	0	0	1	3	5	9	0	1	0	0	3	0	13	52	0	0	0	0	0	0	4	0	0	0	0	0	7	0	0	1	37	137	17	30	3	1	12	35	3	8	0	0	2	0	0	0	0	0	0	0	155	96	0	0	1	0	0	0	0	8	1	0	3	0	0	0	1	0	18	0	0	0	0	2	0	0	0	0	1	1	1	0	0	1	7	12	6	32	6	33	1	11	0	2	0	0	0	12	36	13	7	1	180	32	31	2	2	7	13	6	22	14	0	60	20	0	0	0	9	20	0	2	2	0	0	0	9	2	0	0	1	3	0	10	9	39	6	11	0	0	0	10	2	0
........................................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................	21	1	579.00	579	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	1	1	0	1	0	0	1	0	0	2	0	0	1	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	2	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	1	23	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	0	0	0	1	0	8	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	57	6	14	0	0	2	9	1	3	1	1	0	0	0	0	0	0	0	0	51	24	0	0	0	1	0	0	0	5	1	0	1	0	0	1	4	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	12	0	3	0	2	1	1	0	0	0	4	14	4	2	2	53	8	7	0	0	2	7	6	13	9	0	19	11	0	0	0	3	5	1	1	1	0	0	0	10	0	0	1	0	2	0	14	7	29	10	4	0	0	0	6	1	0
........................................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................	20	1	175.00	175	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	20	6	4	0	0	4	5	0	1	0	0	0	0	0	0	0	0	0	0	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	1	0	3	0	0	0	0	0	0	0	2	3	2	1	0	2	5	2	0	0	2	5	4	4	6	0	6	10	0	0	0	6	5	0	0	0	0	0	0	1	0	0	0	0	0	1	1	2	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGA...........................................................................	22	1	85.00	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	1	0	0	1	1	9	0	1	0	0	0	0	0	0	0	0	0	0	9	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................	19	1	62.00	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	8	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	2	0	1	0	0	0	0	0	0	3	4	2	0	0	2	1	0	0	0	0	0	1	0	0	3	2	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	24	1	42.00	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	1	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	3	3	2	3	6	1	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	22	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAG............................................................................	21	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGT........................................................................................................................	21	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................	23	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGA........................................................................................................................	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTT.........................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................	20	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTA.......................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGA............................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GTGCAGAGGTTTGAGTGT........................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGGCCAGCTAATCAACTCC.............................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGGCCAGCTAATCAACTC..............................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTATC.....................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAT...........................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GTGCAGAGGTTTGAGTGTA.......................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT.....................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGT..........................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGG..........................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGA..........................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTG.......................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGT...........................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGAA..........................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TTGGCCAGCTAATCAACTC..............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGT..............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGAA.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTAT......................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTAA........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCCCCC---................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGAATC........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAATT-----G----------TTTGATG-------TAG-------GTGGGGTAAAATAGG---TAAAGAACT---C----T-T-TTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGA----------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	23	1	882.00	882	5	0	436	1	3	9	0	0	5	13	3	395	2	5	1	1	3
........................................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................	22	1	171.00	171	2	0	41	0	0	1	2	6	13	11	5	84	1	3	2	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	22	1	162.00	162	1	0	124	0	0	3	0	0	0	2	1	29	1	0	0	1	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTAGT...........................................................................	22	1	110.00	110	5	1	85	0	0	0	2	0	6	7	0	4	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................	21	1	88.00	88	3	0	13	0	2	2	1	2	0	1	2	60	0	1	1	0	0
......................................................................................TGGCCAGCTAATCAACTC..............................................................................................................................................	18	1	64.00	64	0	0	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGG...............................................................................	18	1	51.00	51	0	0	50	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTAGA...........................................................................	22	1	49.00	49	0	0	14	0	0	0	2	2	9	5	0	17	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTAG............................................................................	21	1	37.00	37	0	0	14	0	0	1	1	2	3	15	1	0	0	0	0	0	0
.....................................................................................TTGGCCAGCTAATCAACTC..............................................................................................................................................	19	1	33.00	33	0	0	32	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGT........................................................................................................................	21	1	28.00	28	2	0	8	0	0	0	2	4	1	2	4	4	0	1	0	0	0
......................................................................................TGGCCAGCTAATCAACTCC.............................................................................................................................................	19	1	17.00	17	0	0	8	0	0	1	0	0	0	0	0	8	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................	23	1	14.00	14	1	0	5	0	1	1	0	0	0	0	0	6	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................	22	1	13.00	13	2	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................	20	1	13.00	13	0	0	0	0	0	1	4	1	2	1	1	3	0	0	0	0	0
....................................................................................TTTGGCCAGCTAATCAACTC..............................................................................................................................................	20	1	12.00	12	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................	19	1	11.00	11	2	0	6	0	2	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTAGG...........................................................................	22	1	8.00	8	1	0	6	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGA............................................................................................................................	18	1	6.00	6	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0
..................................................................................T-TTTGGCCAGCTAATCAACTC..............................................................................................................................................	21	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCCTG....................................................................................................................	25	1	6.00	6	0	0	4	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	23	1	5.00	5	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................TTGGCCAGCTAATCAACTCC.............................................................................................................................................	20	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTAGC...........................................................................	22	1	5.00	5	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	24	1	5.00	5	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTAGTT..........................................................................	23	1	4.00	4	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGA........................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT.....................................................................................................................	24	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGC........................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCC......................................................................................................................	24	1	3.00	3	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGT..........................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTG.......................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
....................................................................................TTTGGCCAGCTAATCAACTCC.............................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
..........................................................................................................TCGTGCAGAGGTTTGAGTGTCCT.....................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................	20	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTA.............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGC........................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGT............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGA..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGG........................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGC............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ATTCAATTTCTGCACGGTAGA...........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................TCGTGCAGAGGTTTGAGTGTCC......................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GTGCAGAGGTTTGAGTGTC.......................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................GTGCAGAGGTTTGAGT..........................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................TGGCCAGCTAATCAACTCCC............................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGCACGGTAGTA..........................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................ACT---C----T-T-TTTGGCCAGCT.......................................................................................................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAATT-----G----------TTTGATG-------TAG-------GTGGGGTAAAATAGG---TAATAAACA---C----T-T-TTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAA----------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GTTG-----------------TTTGCTA-------TAGGCGG--------GTAAAATAAG---TAA------------------AGTAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAA-----------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................CATCGTGCAGAAGTTTGAGTGTC.......................................................................................................................	23	1	1520.00	1520	68	16	1211	206	0	4	15	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGT........................................................................................................................	22	1	151.00	151	27	21	34	16	8	12	33	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGA...........................................................................	22	1	35.00	35	0	3	30	2	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAAGTTTGAGTGTCC......................................................................................................................	23	1	30.00	30	0	0	29	1	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGTCT......................................................................................................................	24	1	29.00	29	12	2	11	0	0	1	3	0	0	0	0
.........................................................................................................ATCGTGCAGAAGTTTGAGTGTC.......................................................................................................................	22	1	22.00	22	1	2	15	4	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGC........................................................................................................................	22	1	18.00	18	4	0	12	0	0	0	2	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGTCC......................................................................................................................	24	1	13.00	13	1	0	11	0	0	0	1	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTG.........................................................................................................................	21	1	9.00	9	0	2	0	1	0	1	5	0	0	0	0
.........................................................................................................ATCGTGCAGAAGTTTGAGTGTCT......................................................................................................................	23	1	5.00	5	3	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGT...........................................................................	22	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0
......................................................................................................................................................ATTCAATTTCTGAACGGTAGAGT.........................................................................	23	1	4.00	4	2	0	2	0	0	0	0	0	0	0	0
......................................................................................TAAACAGCTAATCAACTCC.............................................................................................................................................	19	1	4.00	4	0	0	3	1	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGT..........................................................................................................................	20	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
............................................................................................................GTGCAGAAGTTTGAGTGTC.......................................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.......................................................................................................CCATCGTGCAGAAGTTTGAGTGTC.......................................................................................................................	24	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGTT.......................................................................................................................	23	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0
..........................................................................................................TCGTGCAGAAGTTTGAGTGTCCTG....................................................................................................................	24	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
.....................................................................................GTAAACAGCTAATCAACTC..............................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGG........................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGTG.......................................................................................................................	23	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAAGTTTGAGTGTCCT.....................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGA........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGA..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................TCGTGCAGAAGTTTGAGTGTCCC.....................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGC..........................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAAGTTTGAGTGTCCTG....................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................TAAACAGCTAATCAACTC..............................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTGTCA......................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................CAATTTCTGAACGGTAGT...........................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGC...........................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TTCAATTTCTGAACGGTAGAGT.........................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TCGTGCAGAAGTTTGAGTGT........................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAGTT.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................CATCGTGCAGAAGTTTGAG...........................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................ATTCAATTTCTGAACGGTAGA...........................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................CCATCGTGCAGAAGTTTGAGTGT........................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

TTTG-----------------TGTGCTA-------TAATTGG--------GTAAAATAAG---AAGGAATAC---A----C-T-TTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGC-AA---GTA------------TTA-ATTA-----TGGTC--A--AA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................................................	22	1	532.00	532	40	12	18	57	185	214	6
........................................................................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	23	1	411.00	411	12	100	1	228	39	31	0
........................................................................................................CATCGTGCAGAGGTTTGAGTG.........................................................................................................................	21	1	293.00	293	17	2	9	41	73	151	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	24	1	39.00	39	1	3	1	6	8	20	0
........................................................................................................CATCGTGCAGAGGTTTGAGT..........................................................................................................................	20	1	35.00	35	4	0	1	2	15	13	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGA...........................................................................	22	1	14.00	14	4	5	0	2	3	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGT........................................................................................................................	21	1	13.00	13	2	1	0	0	7	3	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................................................	22	1	10.00	10	1	2	0	0	6	1	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	23	1	9.00	9	0	4	0	2	0	3	0
........................................................................................................CATCGTGCAGAGGTTTGAG...........................................................................................................................	19	1	8.00	8	0	1	0	0	5	2	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................................................	23	1	5.00	5	1	0	0	1	2	1	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGA........................................................................................................................	22	1	4.00	4	0	0	0	0	2	2	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTG.......................................................................................................................	23	1	2.00	2	0	0	0	1	0	1	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGC........................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCA......................................................................................................................	24	1	2.00	2	0	0	0	1	0	1	0
..........................................................................................................TCGTGCAGAGGTTTGAGTGTCT......................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTT.........................................................................................................................	21	1	2.00	2	1	0	0	0	0	1	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGT...........................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTC.........................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCTG.....................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTCTAA....................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................CATCGTGCAGAGGTTTGAGTA.........................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................CATTCAATTTCTGAACGGTAGAA..........................................................................	23	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGTA.......................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTGTCTT.....................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................ATCGTGCAGAGGTTTGAGTG.........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................ATCGTGCAGAGGTTTGAGT..........................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
......................................................................................TGTCCAGCTAATCAACTCC.............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0

dgr_27

scaffold_15110:657084-657145 +

Known Ortholog

Canonical miRNA

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.4	-36.4	-36.0