dgr_267

CDS [Dgri\GH17935-cds]; CDS [Dgri\GH17935-cds]; exon [dgri_GLEANR_2323:1]; exon [dgri_GLEANR_2323:2]; intron [Dgri\GH17935-in]

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	+
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------################################################## GACGGCCAAGGGTGGCAAAAAGAAACAACGCGCTCCGGCCACCCCAAAAGGTGCAGCATCTGCAGCAGCAGCAGCGGCGGCAGCAGCTGCGGCAGCCAACCAAAGCACGAGCATAACGACGGCAGCCAGCAGCAGCAGCGGCGGCGGCAGCAGTAATAATAATGCAACATCTGCG ************************************************((((.....((((.(((((.((.((....)).)).))))).)))).........)))).................************************************************	Read size	Hit Count	Total Norm	Total	M041 female body
..................................................................................GCAGCTGCGGCAGCCAACC..........................................................................	19	1	1.00	1	1
..................................................................................................................................AGCAGCAGCGGCGGCGGC...........................	18	20	0.05	1	1
....................................................................CAGCAGCGGCGGCAGCAG.........................................................................................	18	20	0.05	1	1
................................................................................................................................GCAGCAGCAGCGGCGGCG.............................	18	20	0.05	1	1

CTGCCGGTTCCCACCGTTTTTCTTTGTTGCGCGAGGCCGGTGGGGTTTTCCACGTCGTAGACGTCGTCGTCGTCGCCGCCGTCGTCGACGCCGTCGGTTGGTTTCGTGCTCGTATTGCTGCCGTCGGTCGTCGTCGTCGCCGCCGCCGTCGTCATTATTATTACGTTGTAGACGC ************************************************((((.....((((.(((((.((.((....)).)).))))).)))).........)))).................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
.....................................................................................................................CGGCCGTCGGTCGACTTCGTC.....................................	21	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15081:3236855-3237029 +	dgr_267	GACGGCCAAGGGTGGC--------------AAAAAGA----------------------------------------AACAACGCGCTCCGGCCACC------------------------CCAAA-AG-G---TGCAG---------------------C---------------AT----------------------CTGC------------------------A---------------------GC-------AG------------------CAGCAGCGGCGGCAGCA-----------------------------GCTGCGGC---------------A-G------------CC---------A-----------------------------------------------------------ACCAAAGCACGAGCATAACGAC-----GGCAG---C--------CAGCA---GCAGCAGCGGC------------GGCG----------------------GCAGCAGTAATAATAATGCAACATCTG-C-----G
droVir3	scaffold_12928:7460908-7461074 -		TACGGCAAAGGGTGGC--------------AAAAAGA----------------------------------------AACAACGCGCACCGACCACA------------------------CCCAA-AGCG---ACCA----------------------------------------------------------------------------------------GCA---------------------GCAGCAGCG----------------------C------CGGCGCCG------GTA---T---TGGCA--------GCAGCAAT-----------------GCG--A-------CAACAGCCTCA--------------------------G---------------------------------------------------CGA--------------CA---------------AGTACACCAAC--------AGC---TGGCGGCAAG--------------GCGGCAC----AATC--CTCACAGCTG-CCAACAA
droMoj3	scaffold_4914:876-1036 +		CAGG--------------AGCA------GCAGCAACA-----------------------------------------------------------------------------------------------------------------GCAAC---------------AGCCGCA---GCA-GCAACGGCAGCAACATCAGC------------------------A---------------------GC-------AG---------CAACA------G------------CA------GCA---GCAG-----C------AGCAGCAG---------------CA-GCA--ACAACA-GCAG------CA--------------------------GCAACA-------GCAG--------------------------------CAGCAG--------------CA---------------ACAGTAGCAGC------------AGCAGCA-------------------GCAGCAGTAACGGCA--GCAACATCAG-C-----A
droWil2	scf2_1100000008636:854-1034 +		AACGGCTGGCGATGGCAATGCT------ACAACAA------------------------------------------------------------------------------------CA-G----------------------------CAAC---------------GGCAGCAA----------CAA------------C------------------------AACAGCAACAACAACTGCAGC-------------AGCAACAACAGCAAC---------------------------------AG-----CAGCAACAATGGCAG---------------CA-ACA--ACAACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------ATTGCAGCAA------------CAACAGCA-------------------ACAGCAGCAACAATG--GCAGCAACAA-C-----A
dp5	XR_group6:12701960-12702137 +		AC-GGTCAACAGCA--------------GCACCAGCA------------------------------ACAG------------------------------------------------CA-G----------------------------CAAC---------------AGCAGCAT----------CAG------------C------------------------AGCAGAAGCAGCAGCAGCAAC-------------AGCAGCAACAGCAGC------------------A------GCA---GCAG-----A------AGCAGCAG---------------CA-GCA--ACAGCA-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------GCAGCAACAG------------CAACAACA-------------------GCAGCAGCAACAGCA--GCAGCAACAG-C-----A
droPer2	scaffold_3927:170-346 -		GCCACCAGCCGAGGAC-------------------------------------------------------GAAGAGGGCCCCGAGAGGCGGCCACCTCAAATCGAGGAGGAGCAGCAG-----------C---AGCAGCACCAGCAGCAGCAGC---------------AGCCGCAGCAG----------------------C---AGCAGCAGCAGCAGCTCCAGCA---------------------TCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--------------CA---------------GCAGCAGCAG------------CCGCAGCA-------------------GCAGCAGCAGCACCA--GCATCAGCAG-C-----G
droAna3	scaffold_13248:2270638-2270803 -	dan_4064	GACGGCA---------------------GCAGCAG------------------------------------------------------------------------------------CA-GCCACAG-CAGCAACA------GCAGCAGCAGC---------------AA----------------------------CAGC------------------------A---------------ACAGC-------------AACAGCAACAGCAGCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCAGCA-GCCA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------ACGACAGCAG------------CAGCAGCA-------------------ACGTCAGCAGCAGCA--GCAACGACAA-C-----A
droBip1	scf7180000395304:30364-30497 +		GACGGCCAAAGGTGGC--------------AAAAAGA----------------------------------------AGCAACGAGCACCGGCCACC------------------------CCCAA-AG-C---CGCAT----------------------------------------------------------------------------------------------------------------------CC----------------------T------------CG-----------------------------GGCTCCGGAGCA------------------------G----------T-CGCTCCGGGTG--CGGGGACGGTC------------------------------------------------------------------------------------------------AG------------TAGTGGCG-------------------GCGGCAGTAGCGCGA--ATAAAGTATC-T-----G
droKik1	scf7180000302517:734677-734861 +		CAAC--------------GTCA------ACGGCGGCA------------------------------ACAA------------------------------------------------CA-G----------------------------GGAC---------------TGCAGCAA----------CAG------------C------------------------GGCAGCAACATCGACCTCAACCTC----------AGCAACATCTGCGGCAGCAG-----------------------------------C------AGCAGC--------------------------------------------AGCG----------------------G-----CGGCGGC------------------------------------------------GGCAACATCTGCAACG---------GGAACAACAGC------------AGCGGCAACATCTGCGGCGGGGAGCAGCAGCGGTAGCAGTAGTACAAGCACAA-C-----G
droFic1	scf7180000454044:716074-716237 -		CAAC--------------GGCA------GCAACACGA------------------------------ACGA------------------------------------------------CA-A-------------------------------------------------GCACG---CCA-GCAACAGCAGCAACACCAAC------------------------A------------ACAGCAA---------C-------A---------------G------------CA------ACA---G--------------------CGACAGCA------GCAGCAG---AAG-------CAAC-------AGCA----------------------A-----CAACAAA------------------------------------------------GGCAGCAGCAACAACA---------CGAGCAGCAGC------------AGCAGCA-------------------GCAACAGAGTCAACA--GCAACAGCTG-C-----G
droEle1	scf7180000491193:3035975-3036130 -		CGAG--------------GACA------ACAAAATGA----------------------------------------TGCA-------CAGTTC-------------------CAGCAGCACG----------------------------CAAATGCAGCAGCAGCAGCAGCAACAG----------------------C------------AACAGCAGCAA---------------------------------C-------AACAGC------------------------A------GCAAC---AG-----C------AGCAACAG---------------------CA-------GCAA--------------------------------------------------------------------------------------CAG--------------CA---------------GCAACAGCAGC------------AGCAACA-------------------GCAGCAGCAAATCCT--GCACCAGCAT-C-----A
droRho1	scf7180000780277:22156-22309 -		GCAA----------------------------AAAGG----------------------------------------AGCCAAGTGCGTCGGCC-------------------CAGCAG-----------C---AACAC---------------C---------------------TC----------------------CAGC---AGCAGCAGCAGCAGCAACAGCA---------------------GCAGCAAC-------A---------------G------------C-----------------------------AGCAACACCAGCAGCAACA------C---GC-------CCAG--------------------------------------------------------------------------------------CAG--------------CT---------------GCAGCACCAGC------------AGCTGCA-------------------GCAGCAACATGCCCA--GCAGCAGCAG-C-----A
droBia1	scf7180000302428:5892560-5892723 +		GAAA--------------AGCA------GAGG-AC------------------------------------GCA------------------------------------------------------G-AAGCA-------------------------------------GCAGG---CCTCGCAACAGCAGCAGATCCAGCAACAACAGTTGCAACACCAACAGCA---------------------GC-------TGCAGCAGCAAC--------------------------------------------------------AACAGCAGCAGCAACA------G---CA-------GCAA--------------------------------------------------------------------------------------CAA--------------CA---------------ACAACAGCAGC------------AGCAAAA-------------------ACAACAGCAACAACA--ACAACAACAG-C-----A
droTak1	scf7180000413903:78237-78429 +		AACGGCTCAGCGAGGC--------------CAATGCCAGCAACATGAATCACCTGCCACCACACCCG----------------------------------------------C--------------------AGCA------------------------GCAGCAGCAACATCAG----------------------C---------------------------A---------------------GCAGCAGCA----------------------G------------CAACAGCAGCAACATC--------------AGGCTCACC---------------A-G-----CA---A----------C-ACCAGC-GATC--CTCGCCAGCCC-----------------AA--------------------------------CAGCAG-----------------------------------CAGCAGCAGATGAACAGC---AGTCG----------------------GCAGAGTC-ACA--ATGACATGTGCC-----G
droEug1	scf7180000409538:185303-185508 +		CG--GT--------------CAACAGCAGCAACAGCA-------------------------------------------------------------------------------------A-------------------------------------------------ACGCTGCAG----------------------T---CGCAGTCGCAGCAGCAGCAGCA---------------------GC-------TGCAGTAGCAGCAGCAGCAGCA---------------------GCAACGCT--------------AGCGTCGGC---------------A-G-----CG---A----------C-GCCA-----------------------------------GCAGCATGTCCAAAACAAGCAGCGGGAATCCGAGTGCAGCAGCAACAC--------AA------GCAGCA---GCAGCAGCCG------------CTGCAGCA-------------------GCAGCAGCAGCAAGT--GCAACAAATG-C-----C
dm3	chrX:6040022-6040182 -		GGCAGC----GGTGG-----C---------AACA--------------------------------------------------------------------------------------------------------------GCAACAACAAC---------------TACCACTCAAT----------------------C---AGCAACATCTGCAACATCGACA---------------------GCGGCAACA----------------------T------------CG-----------------------------GCGGCGGCAGCA------------------------G----------C-AGCTAGGAATGGCCAGCGACGTCGCG----------------------------------------------TGGCAGCAGCAACAG--------A---------------------A--------------------GGCT-------------------GCAACAGCAACATCG--GCAACAGCAA-C-----A
droSim2	x:5681516-5681676 -		GGCAGC----GGTGG-----C---------AACA--------------------------------------------------------------------------------------------------------------GCAACAACAAC---------------TACCACTCAAT----------------------C---AGCAACATCTGCAACATCGACA---------------------GCGGCAACA----------------------T------------CG-----------------------------GCGACAGCAGCA------------------------G----------C-AGCTAGGAATGGCCAGCGACGTCGCG----------------------------------------------TGGCAGCAGCAACAG--------A---------------------A--------------------GGCT-------------------GCAACAGCAACATCG--GCAACAGCAA-C-----A
droSec2	scaffold_34:270766-270918 +		GTAC--------------GAGG------CCGAGGTGG-AC-------------------------------GATGAGGGAAACGCGCTGC---A-------------------C-------------AG-G---AGCAG---------------------C---------------AT----------------------CAGC------------------------A---------------------GT-------TGCAGCAGCAGC---------------------------------A---G---CAGCA--------GCAGCAGT---------------AG---CAG-------CAACAGCATCA--------------------------G---------------------------------------------------CTG--------------CA---------------GCTGCAGCAGC------------GATGGCAGCAACT--------------CCACCG----CATC--GCAGCCTCTG-T-----C
droYak3	X:18714417-18714584 -		GACGACAACAATAAGC--------------AAGCAGG----------------------------------------AGCAGC----------------------------------AG-----------C---AGCA------GCAGCAGCAAC---------------AGCAGCAT----------------------CAGC---AGCAGCAGCAGCAGCAACAACA---------------------GCAGCAAC-------A---------------G------------C-----------------------------AGCAACAGCAGCAACAACA------G---CA-------GCAA--------------------------------------------------------------------------------------CAG--------------CA---------------GCAGCAACAGC------------AGCAGCA-------------------GCAACAACAGCAGCA--GCAACATCAG-C-----A
droEre2	scaffold_4929:14033915-14034093 -		GTCGAC------------GTCG------TCAACACGA----------GC----CGACACGACAGCAG----------------------------------------------CAGCAG-------CAG-C---------------------AGC---------------AGCAGCAG----------------------CAGC---AGCAGCAGCAACAGC----------------------------------------AGCAGCAGCAGCAGCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCAGCA-G--------------------------------------------------------------------------------------CAGCAGCAGCAG--------AA------GCAGCAGCAGCAGCAGCAG------------CAGCAGCA-------------------ACATC--------AG--GCAACGGCAG-C-----A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GACGGCCAAGGGTGGC--------------AAAAAGA----------------------------------------AACAACGCGCTCCGGCCACC------------------------CCAAA-AG-G---TGCAG---------------------C---------------AT----------------------CTGC------------------------A---------------------GC-------AG------------------CAGCAGCGGCGGCAGCA-----------------------------GCTGCGGC---------------A-G------------CC---------A-----------------------------------------------------------ACCAAAGCACGAGCATAACGAC-----GGCAG---C--------CAGCA---GCAGCAGCGGC------------GGCG----------------------GCAGCAGTAATAATAATGCAACATCTG-C-----G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................................................................................GCA-----------------------------GCTGCGGC---------------A-G------------CC---------A-----------------------------------------------------------ACC.....................................................................................................................................	19	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGCGGC------------GGCG----------------------GC.................................	18	20	0.05	1	1	0
.......................................................................................................................................................................................................................................................................................CAGCAGCGGCGGCAGCA-----------------------------G....................................................................................................................................................................................................................................................	18	20	0.05	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GCAGCAGCGGC------------GGCG----------------------...................................	18	20	0.05	1	1	0

droVir3

TACGGCAAAGGGTGGC--------------AAAAAGA----------------------------------------AACAACGCGCACCGACCACA------------------------CCCAA-AGCG---ACCA----------------------------------------------------------------------------------------GCA---------------------GCAGCAGCG----------------------C------CGGCGCCG------GTA---T---TGGCA--------GCAGCAAT-----------------GCG--A-------CAACAGCCTCA--------------------------G---------------------------------------------------CGA--------------CA---------------AGTACACCAAC--------AGC---TGGCGGCAAG--------------GCGGCAC----AATC--CTCACAGCTG-CCAACAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................AACAACGCGCACCGACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
................................AAAGA----------------------------------------AACAACGCGCACCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------CA---------------AGTACACCAAC--------AGC---TGGC.......................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................AT-----------------GCG--A-------CAACAGCCTCA--------------------------G---------------------------------------------------CGA--------------.....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AAAGA----------------------------------------AACAACGCGCACCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------CA---------------AGTACACCAAC--------AGC---T..........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CAACGCGCACCGACCACA------------------------CC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................T---TGGCA--------GCAGCAAT-----------------GCG--A-------C..............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................A--------GCAGCAAT-----------------GCG--A-------CAACAGCCTCA--------------------------G---------------------------------------------------C.....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAG--------------GCGGCAC----AATC--CT................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................A---T---TGGCA--------GCAGCAAT-----------------GCG--A-------C..............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................G---ACCA----------------------------------------------------------------------------------------GCA---------------------GCAGCAGCG----------------------C------CG........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................CA------------------------CCCAA-AGCG---ACCA----------------------------------------------------------------------------------------GCA---------------------GCAGCAG.........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGGC--------------AAAAAGA----------------------------------------AACAACGCGCACCGACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCAAG--------------GCGGCAC----AATC--CTCACA............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----AATC--CTCACAGCTG-CCAAC..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AT-----------------GCG--A-------CAACAGCCTCA--------------------------G---------------------------------------------------C.....................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................CA----------------------------------------------------------------------------------------GCA---------------------GCAGCAGCG----------------------C------CGGCGC....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................AT-----------------GCG--A-------CAACAGCCTCA--------------------------G---------------------------------------------------CGA--------------CA---------------....................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CCTCA--------------------------G---------------------------------------------------CGA--------------CA---------------AGTACACCA...........................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACCAAC--------AGC---TGGCGG.....................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------AGC---TGGCGGCAAG--------------GC.................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACCAAC--------AGC---TGGCGGCAAG--------------GC.................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GCAGCG----------------------C------CGGCGCCG------GTA---T---T.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................A---------------------GCAGCAGCG----------------------C------CGGC......................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droMoj3

CAGG--------------AGCA------GCAGCAACA-----------------------------------------------------------------------------------------------------------------GCAAC---------------AGCCGCA---GCA-GCAACGGCAGCAACATCAGC------------------------A---------------------GC-------AG---------CAACA------G------------CA------GCA---GCAG-----C------AGCAGCAG---------------CA-GCA--ACAACA-GCAG------CA--------------------------GCAACA-------GCAG--------------------------------CAGCAG--------------CA---------------ACAGTAGCAGC------------AGCAGCA-------------------GCAGCAGTAACGGCA--GCAACATCAG-C-----A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................AACA-----------------------------------------------------------------------------------------------------------------GCAAC---------------AGCCGCA---GCA-GCA...............................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................A--------------------------GCAACA-------GCAG--------------------------------CAGCAG--------------CA---------------ACAGTA..............................................................................	25	6	0.17	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................GCAG---------------CA-GCA--ACAACA-GCAG------C.....................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
.............................CAGCAACA-----------------------------------------------------------------------------------------------------------------GCAAC---------------AGCCGCA---......................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	1	0
.......................................................................................................................................................CAAC---------------AGCCGCA---GCA-GCAAC.............................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	1	0	0	0	0	0
.................................................................................................................................................................................................GCAACATCAGC------------------------A---------------------GC-------AG---------CAAC........................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	0	0	1	0
...........................................................................................................................................................................................................C------------------------A---------------------GC-------AG---------CAACA------G------------CA------GCA---GCAG-----C------AGCA..................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGC------------AGCAGCA-------------------GCAGCAGT...........................	22	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................AACATCAGC------------------------A---------------------GC-------AG---------CAACA------.................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................ATCAGC------------------------A---------------------GC-------AG---------CAACA------G------------CA------GC..........................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................ACAACA-GCAG------CA--------------------------GCAACA-------GCAG--------------------------------CAG......................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCAG-----C------AGCAGCAG---------------CA-GCA--ACAACA-GCA.............................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................A--ACAACA-GCAG------CA--------------------------GCAACA-------GCAG--------------------------------CAGC.....................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................CA--ACAACA-GCAG------CA--------------------------GCAAC.....................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................A-GCA--ACAACA-GCAG------CA--------------------------GCAACA-------GC...........................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................A---------------------GC-------AG---------CAACA------G------------CA------GCA---GCA...................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCAGC------------AGCAGCA-------------------GCA................................	20	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................TCAGC------------------------A---------------------GC-------AG---------CAACA------G------------CA------GC..........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AGCAGCA-------------------GCAGCAGTAAC........................	19	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AG---------------CA-GCA--ACAACA-GCAG------CA--------------------------GCAACA-------GC...........................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...................GCA------GCAGCAACA-----------------------------------------------------------------------------------------------------------------GCAAC---------------AG..............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CA-GCA--ACAACA-GCAG------CA--------------------------GC........................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CAACA-GCAG------CA--------------------------GCAACA-------GCA..........................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................A--ACAACA-GCAG------CA--------------------------GCAACA-------GCAG--------------------------------C........................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................GCAAC---------------AGCCGCA---GCA-GCA...............................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0

droWil2

AACGGCTGGCGATGGCAATGCT------ACAACAA------------------------------------------------------------------------------------CA-G----------------------------CAAC---------------GGCAGCAA----------CAA------------C------------------------AACAGCAACAACAACTGCAGC-------------AGCAACAACAGCAAC---------------------------------AG-----CAGCAACAATGGCAG---------------CA-ACA--ACAACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------ATTGCAGCAA------------CAACAGCA-------------------ACAGCAGCAACAATG--GCAGCAACAA-C-----A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................AACAATGGCAG---------------CA-ACA--ACAACA-G...............................................................................................................................................................................................................	23	20	0.70	14	0	14	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------CAACAGCA-------------------ACAGCAGCAACA.......................	22	20	0.30	6	0	5	0	1	0
.......GGCGATGGCAATGCT------ACAACAA------------------------------------------------------------------------------------CA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0
..........GATGGCAATGCT------ACAACAA------------------------------------------------------------------------------------CA-G----------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0
.......GGCGATGGCAATGCT------ACAACAA------------------------------------------------------------------------------------CA-G----------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
........GCGATGGCAATGCT------ACAACAA------------------------------------------------------------------------------------CA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0
................AATGCT------ACAACAA------------------------------------------------------------------------------------CA-G----------------------------CAAC---------------................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0
................................................................................................................................................................................AA----------CAA------------C------------------------AACAGCAACAACAACTG.....................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0
............................................................................................................................................................................................................................................................................................................................................................A-ACA--ACAACA-GCAA------CA--------------------------ACAACT-------G............................................................................................................................................................	23	20	0.20	4	0	4	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA------------CAACAGCA-------------------ACAGCAGC...........................	21	20	0.15	3	0	2	0	1	0
.................................................................................................................................................................................................................................................................................................................................AACAATGGCAG---------------CA-ACA--ACAACA-GC..............................................................................................................................................................................................................	24	20	0.15	3	0	2	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------CA---------------ATTGCAGCAA------------CAACAGCA-------------------...................................	22	20	0.15	3	0	1	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------CA---------------ATTGCAGCAA------------CAACAG........................................................	20	20	0.15	3	0	3	0	0	0
.............................................................................................................................................................................AGCAA----------CAA------------C------------------------AACAGCAACAACAACTG.....................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA-------------------ACAGCAGCAACAATG--GC................	24	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA-------------------ACAGCAGCAACAATG--G.................	23	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------CAACAGCA-------------------ACAGCAGCAAC........................	21	20	0.10	2	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................CAACAATGGCAG---------------CA-ACA--ACAACA-G...............................................................................................................................................................................................................	24	20	0.10	2	0	1	0	1	0
.........................................................................................................................................................................................................................................................................AACAACAGCAAC---------------------------------AG-----CAGCAAC......................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................AG---------------CA-ACA--ACAACA-GCAA------CA--------------------------ACAACT-------G............................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................AACAGCAAC---------------------------------AG-----CAGCAACAATGGC................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................AACAGCAAC---------------------------------AG-----CAGCAACAATGG.................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------ATTGC...............................................................................	25	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................................................TGCAGC-------------AGCAACAACAGCA.......................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	0	1
.......................................................................................................................CA-G----------------------------CAAC---------------GGCAGCAA----------CAA------------C------------------------......................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	1	0
..........................................................................................................................................................................GGCAGCAA----------CAA------------C------------------------AACAGCAACAA...........................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------------CAACAGCA-------------------ACAGCAGCA..........................	24	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................CAACAATGGCAG---------------CA-ACA--ACAACA-GC..............................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................AGCAACAACAGCAAC---------------------------------AG-----CAGC.........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................A--ACAACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------.........................................................................................................................	23	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GGCAG---------------CA-ACA--ACAACA-GCAA------C.....................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................AACAACAACTGCAGC-------------AGCAACA.............................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------CA---------------ATTGCAGCAA------------CAACAGCA-------------------A..................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CAACAGCA-------------------ACAGCAGCAACAATG--G.................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................AGCAACAACAACTGCAGC-------------AGCAACA.............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................A-ACA--ACAACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------C........................................................................................................................	27	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................C-------------AGCAACAACAGCAAC---------------------------------AG-----CAG..........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................A-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------....................................................................................	25	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................AG-----CAGCAACAATGGCAG---------------CA-ACA--ACA....................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------ATTGCAGC............................................................................	28	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AA------CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------....................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGGCAG---------------CA-ACA--ACAACA-GCAA------CA--------------------------ACAA......................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................C------------------------AACAGCAACAACAACTGCAG..................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................A-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------.....................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................AACAATGGCAG---------------CA-ACA--ACAACA-GCA.............................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................ACAGCAACAACAACTGCAGC-------------A...................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................A--ACAACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CA.......................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................ACAATGGCAG---------------CA-ACA--ACAACA-G...............................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------CA---------------ATTGCAGCAA------------CAACAGCA-------------------A..................................	23	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------CAACAGCA-------------------ACAGCAGCAACAATG--GC................	27	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................AGCAAC---------------------------------AG-----CAGCAACAATGG.................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAA------------CAACAGCA-------------------ACAGCAGC...........................	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------------CAACAGCA-------------------ACAGCAG............................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................A--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------ATT.................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................A--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------CA---------------ATTG................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAATG--GCAGCAACAA-C-----A	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................AACAGCAACAACAACTGCAGC-------------AGC.................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................GCAGC-------------AGCAACAACAGCAAC---------------------------------AG-----CA...........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAA------------CAACAGCA-------------------ACAGCAG............................	24	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------CA---------------ATTGCAGCAA------------CAACAGCA-------------------AC.................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................AACAACAGCAAC---------------------------------AG-----CAGCAACAATGGC................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................AGCAACAACAACTGCAGC-------------AGCAA...............................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................AATGGCAG---------------CA-ACA--ACAACA-GCAA------CA--------------------------AC........................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------CA---------------ATTGCAGCAA------------CAACAGC.......................................................	21	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................CAACAGCAAC---------------------------------AG-----CAGCAACAATGGC................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGGCAG---------------CA-ACA--ACAACA-GCAA------CA--------------------------ACAAC.....................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................A-ACA--ACAACA-GCAA------CA--------------------------ACAACT-------GC...........................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------ACAGCAGCAACAATG--G.................	20	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................ACAACAGCAAC---------------------------------AG-----CAGCAACAATGG.................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GGCAG---------------CA-ACA--ACAACA-GCAA------CA--------------------------A.........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CAGC.....................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................AA------------C------------------------AACAGCAACAACAACTGCAG..................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA-------------------ACAGCAGCAACAATG--GC................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA------------CAACAGCA-------------------ACAGCAGCA..........................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................AA------------C------------------------AACAGCAACAACAACTGCAGC-------------A...................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................GGCAGCAA----------CAA------------C------------------------AACAGCAAC.............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................AACAGCAACAACAACTGCAGC-------------AGCAAC..............................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................AA----------CAA------------C------------------------AACAGCAACAACAACTGCAGC-------------....................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................AATGGCAG---------------CA-ACA--ACAACA-GC..............................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGGCAG---------------CA-ACA--ACAACA-GCAA------CA--------------------------A.........................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................AGCAACAACAGCAAC---------------------------------AG-----CAGCA........................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ATTGCAGCAA------------CAACAGCA-------------------ACAGC..............................	24	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CAACAGCA-------------------ACAGCAGCAACA.......................	21	20	0.05	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................ACAATGGCAG---------------CA-ACA--ACAACA-GCA.............................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAA------------CAACAGCA-------------------ACAGCAGC...........................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................GC-------------AGCAACAACAGCAAC---------------------------------AG-----CAG..........................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................GCAACAACAGCAAC---------------------------------AG-----CAGC.........................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................CAACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------.........................................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................AATGGCAG---------------CA-ACA--ACAACA-GCA.............................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CA.......................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................GC-------------AGCAACAACAGCAAC---------------------------------AG-----CAGCA........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................AACA-GCAA------CA--------------------------ACAACT-------GCAG--------------------------------CAGCAA--------------C....................................................................................................	27	20	0.05	1	0	1	0	0	0

dp5

AC-GGTCAACAGCA--------------GCACCAGCA------------------------------ACAG------------------------------------------------CA-G----------------------------CAAC---------------AGCAGCAT----------CAG------------C------------------------AGCAGAAGCAGCAGCAGCAAC-------------AGCAGCAACAGCAGC------------------A------GCA---GCAG-----A------AGCAGCAG---------------CA-GCA--ACAGCA-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------GCAGCAACAG------------CAACAACA-------------------GCAGCAGCAACAGCA--GCAGCAACAG-C-----A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................C---------------AGCAGCAT----------CAG------------C------------------------AGCAGAAGC.............................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAT----------CAG------------C------------------------AGCAGAAGCAGC..........................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................................................................ACAG------------------------------------------------CA-G----------------------------CAAC---------------AGCAGCAT----------C.............................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA-------------------GCAGCAGCAACAGC.....................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GCA-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGC.....................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GCAGCAGCAAC-------------AGCAGCAACAGC........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCAG---------------CA-GCA--ACAGCA-GCAA------C.....................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAG------------CAACAACA-------------------GCAGC..............................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AGCA-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGC.....................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA-------------------GCAGCAGCAACAGCA--G.................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................A-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------C....................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------------CAACAACA-------------------GCAGCAGCA..........................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCA--GCAGCAACAG-C-----.	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCAG---------------CA-GCA--ACAGCA-GCAA------CA--------------------------GC........................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CAGCAGCAAC-------------AGCAGCAACAGCA.......................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GCAGCAGCAAC-------------AGCAGCAAC...........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAG------------CAACAACA-------------------GCAGCA.............................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------GC..................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG--------------CA---------------GCAGCAACAG------------C.............................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAG---------------CA-GCA--ACAGCA-GCAA------CA--------------------------..........................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCA--GCAGCAACA.........	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAG---------------CA-GCA--ACAGCA-GCAA------CA--------------------------GCA.......................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCA--GCAGCAACAG-C-----.	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------....................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AGCAGCAGCAAC-------------AGCAGCAACAGCAGC------------------A------............................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................CA------------------------------ACAG------------------------------------------------CA-G----------------------------CAAC---------------AGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAACAACA-------------------GCAGCAGCAA.........................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................CAGCAGCAAC-------------AGCAGCAACA..........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.................................AGCA------------------------------ACAG------------------------------------------------CA-G----------------------------CAAC---------------AGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------GCAA--------------------------------CAGCAG--------------CA---------------GCAGCA..............................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GCA-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CA.......................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------GCAA--------------------------------CAGCAG--------------CA---------------GCAGCAACAG------------CA............................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................CA-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------....................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCAG---------------CA-GCA--ACAGCA-GCAA------CA--------------------------GCAGCA-------.............................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GCA-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------....................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................A-GCAA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------GC..................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------------------CAGCAG--------------CA---------------GCAGCAACAG------------C.............................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................A------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------C....................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------------CA---------------GCAGCAACAG------------CAACAACA-------------------...................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG------------CAACAACA-------------------GCAGCAGC...........................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------CA---------------GCAGCAACAG------------CAACAACA-------------------GC.................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

GCCACCAGCCGAGGAC-------------------------------------------------------GAAGAGGGCCCCGAGAGGCGGCCACCTCAAATCGAGGAGGAGCAGCAG-----------C---AGCAGCACCAGCAGCAGCAGC---------------AGCCGCAGCAG----------------------C---AGCAGCAGCAGCAGCTCCAGCA---------------------TCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--------------CA---------------GCAGCAGCAG------------CCGCAGCA-------------------GCAGCAGCAGCACCA--GCATCAGCAG-C-----G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......AGCCGAGGAC-------------------------------------------------------GAAGAGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.67	2	2	0	0	0	0	0
..........GAGGAC-------------------------------------------------------GAAGAGGGCCCCGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
.........CGAGGAC-------------------------------------------------------GAAGAGGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
......................................................................................................TCGAGGAGGAGCAGCAG-----------C---AGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0
......................................................................................................TCGAGGAGGAGCAGCAG-----------C---AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------GCAGCAGCAGCACCA--GCAT..............	23	5	0.20	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------GCAGCAGCAGCACCA--GCATCAGCA.........	25	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCA-------------------GCAGCAGCAGCACCA--GC................	25	6	0.17	1	0	1	0	0	0	0
................................................................................................................................................................................................................................CAGCA---------------------TCAGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--------------CA---------------GCAGC...............................................................................	22	8	0.13	1	0	0	1	0	0	0
.......................................................................................................CGAGGAGGAGCAGCAG-----------C---AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAGCAGCAG------------CCGCAGCA-------------------GCA................................	23	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................CAGCAGC---------------AGCCGCAGCAG----------------------C---AGCA.......................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG------------CCGCAGCA-------------------GCAGCA.............................	23	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................CAGCAGCAGC---------------AGCCGCAGCAG----------------------C---A..........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droAna3

GACGGCA---------------------GCAGCAG------------------------------------------------------------------------------------CA-GCCACAG-CAGCAACA------GCAGCAGCAGC---------------AA----------------------------CAGC------------------------A---------------ACAGC-------------AACAGCAACAGCAGCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCAGCA-GCCA------CA--------------------------GCAGCA-------GCAA--------------------------------CAGCAG--------------CA---------------ACGACAGCAG------------CAGCAGCA-------------------ACGTCAGCAGCAGCA--GCAACGACAA-C-----A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................A---------------CA-GCA--GCAGCA-GCCA------CA--------------------------GC........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAGCAA---------------CA-GCA--GCAGCA-GCCA------C.....................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................GCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCAGC..................................................................................................................................................................................................................	29	6	0.17	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GCAGCA-GCCA------CA--------------------------GCAGCA-------GC...........................................................................................................................................................	20	7	0.14	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GCAGCAA---------------CA-GCA--GCAGCA-GCC.............................................................................................................................................................................................................	21	16	0.13	2	0	1	1	0	0	0
............................GCAGCAG------------------------------------------------------------------------------------CA-GCCACAG-CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................GCA--GCAGCA-GCCA------CA--------------------------GCAGC.....................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	1
...................................................................................................................................AGCAACA------GCAGCAGCAGC---------------AA----------------------------CAGC------------------------A---------------......................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	1	1	0	0	0
....................................................................................................................................................................................................................................................................................CAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCA....................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCA---------------------------A-----------CAGCAGCA..................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................GC-------------AACAGCAACAGCAGCAGCA---------------------------A-----------CAGC......................................................................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................A---------------ACAGC-------------AACAGCAACAGCAGCAGCA---------------------------A-----------C.........................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................CAACAGCAGCAGCA---------------------------A-----------CAGCAGCAGC................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................C---------------AA----------------------------CAGC------------------------A---------------ACAGC-------------AACAGCAACAGCAGC.....................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................A------GCAGCAGCAGC---------------AA----------------------------CAGC------------------------A---------------ACAGC-------------....................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................GCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GA.....................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAGC-------------AACAGCAACAGCAGCA....................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................C-------------AACAGCAACAGCAGCAGCA---------------------------......................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCA---------------------------A-----------CAGC......................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AGCAA---------------CA-GCA--GCAGCA-GCC.............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................................AGC------------------------A---------------ACAGC-------------AACAGCAACAGC........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................AGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-............................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................A----------------------------CAGC------------------------A---------------ACAGC-------------AACAGCAAC...........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................CA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCAGC..................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................A---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--.......................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................GCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GC..........................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droBip1

GACGGCCAAAGGTGGC--------------AAAAAGA----------------------------------------AGCAACGAGCACCGGCCACC------------------------CCCAA-AG-C---CGCAT----------------------------------------------------------------------------------------------------------------------CC----------------------T------------CG-----------------------------GGCTCCGGAGCA------------------------G----------T-CGCTCCGGGTG--CGGGGACGGTC------------------------------------------------------------------------------------------------AG------------TAGTGGCG-------------------GCGGCAGTAGCGCGA--ATAAAGTATC-T-----G	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAC--------------GTCA------ACGGCGGCA------------------------------ACAA------------------------------------------------CA-G----------------------------GGAC---------------TGCAGCAA----------CAG------------C------------------------GGCAGCAACATCGACCTCAACCTC----------AGCAACATCTGCGGCAGCAG-----------------------------------C------AGCAGC--------------------------------------------AGCG----------------------G-----CGGCGGC------------------------------------------------GGCAACATCTGCAACG---------GGAACAACAGC------------AGCGGCAACATCTGCGGCGGGGAGCAGCAGCGGTAGCAGTAGTACAAGCACAA-C-----G	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAC--------------GGCA------GCAACACGA------------------------------ACGA------------------------------------------------CA-A-------------------------------------------------GCACG---CCA-GCAACAGCAGCAACACCAAC------------------------A------------ACAGCAA---------C-------A---------------G------------CA------ACA---G--------------------CGACAGCA------GCAGCAG---AAG-------CAAC-------AGCA----------------------A-----CAACAAA------------------------------------------------GGCAGCAGCAACAACA---------CGAGCAGCAGC------------AGCAGCA-------------------GCAACAGAGTCAACA--GCAACAGCTG-C-----G	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGAG--------------GACA------ACAAAATGA----------------------------------------TGCA-------CAGTTC-------------------CAGCAGCACG----------------------------CAAATGCAGCAGCAGCAGCAGCAACAG----------------------C------------AACAGCAGCAA---------------------------------C-------AACAGC------------------------A------GCAAC---AG-----C------AGCAACAG---------------------CA-------GCAA--------------------------------------------------------------------------------------CAG--------------CA---------------GCAACAGCAGC------------AGCAACA-------------------GCAGCAGCAAATCCT--GCACCAGCAT-C-----A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAA----------------------------AAAGG----------------------------------------AGCCAAGTGCGTCGGCC-------------------CAGCAG-----------C---AACAC---------------C---------------------TC----------------------CAGC---AGCAGCAGCAGCAGCAACAGCA---------------------GCAGCAAC-------A---------------G------------C-----------------------------AGCAACACCAGCAGCAACA------C---GC-------CCAG--------------------------------------------------------------------------------------CAG--------------CT---------------GCAGCACCAGC------------AGCTGCA-------------------GCAGCAACATGCCCA--GCAGCAGCAG-C-----A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAAA--------------AGCA------GAGG-AC------------------------------------GCA------------------------------------------------------G-AAGCA-------------------------------------GCAGG---CCTCGCAACAGCAGCAGATCCAGCAACAACAGTTGCAACACCAACAGCA---------------------GC-------TGCAGCAGCAAC--------------------------------------------------------AACAGCAGCAGCAACA------G---CA-------GCAA--------------------------------------------------------------------------------------CAA--------------CA---------------ACAACAGCAGC------------AGCAAAA-------------------ACAACAGCAACAACA--ACAACAACAG-C-----A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACGGCTCAGCGAGGC--------------CAATGCCAGCAACATGAATCACCTGCCACCACACCCG----------------------------------------------C--------------------AGCA------------------------GCAGCAGCAACATCAG----------------------C---------------------------A---------------------GCAGCAGCA----------------------G------------CAACAGCAGCAACATC--------------AGGCTCACC---------------A-G-----CA---A----------C-ACCAGC-GATC--CTCGCCAGCCC-----------------AA--------------------------------CAGCAG-----------------------------------CAGCAGCAGATGAACAGC---AGTCG----------------------GCAGAGTC-ACA--ATGACATGTGCC-----G	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CG--GT--------------CAACAGCAGCAACAGCA-------------------------------------------------------------------------------------A-------------------------------------------------ACGCTGCAG----------------------T---CGCAGTCGCAGCAGCAGCAGCA---------------------GC-------TGCAGTAGCAGCAGCAGCAGCA---------------------GCAACGCT--------------AGCGTCGGC---------------A-G-----CG---A----------C-GCCA-----------------------------------GCAGCATGTCCAAAACAAGCAGCGGGAATCCGAGTGCAGCAGCAACAC--------AA------GCAGCA---GCAGCAGCCG------------CTGCAGCA-------------------GCAGCAGCAGCAAGT--GCAACAAATG-C-----C	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGCAGC----GGTGG-----C---------AACA--------------------------------------------------------------------------------------------------------------GCAACAACAAC---------------TACCACTCAAT----------------------C---AGCAACATCTGCAACATCGACA---------------------GCGGCAACA----------------------T------------CG-----------------------------GCGGCGGCAGCA------------------------G----------C-AGCTAGGAATGGCCAGCGACGTCGCG----------------------------------------------TGGCAGCAGCAACAG--------A---------------------A--------------------GGCT-------------------GCAACAGCAACATCG--GCAACAGCAA-C-----A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................A------------------------G----------C-AGCTAGGAATGGCCAGC...................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGCGACGTCGCG----------------------------------------------TA..........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GCTAGGAATGGCCAGCGAC................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAGCGACGTCGCG----------------------------------------------TGGCA.......................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................AGCGACGTCGCG----------------------------------------------TGGCAGCG....................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GAATGGCCAGCGACGTCGCG----------------------------------------------T...........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................GGAATGGCCAGCGACGTC.............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACA--------------------------------------------------------------------------------------------------------------GCAACAACAAC---------------TACCA...........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------A---------------------A--------------------GGCT-------------------GCAACAGCAACA.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ACATCTGCAACATCGACA---------------------GCG.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG--------A---------------------A--------------------GGCT-------------------GCAAC..............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................A---------------------GCGGCAACA----------------------T------------CG-----------------------------GCGGC................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GCAACA----------------------T------------CG-----------------------------GCGGCGGCAGCA------------------------G----------C-AGC.................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CG-----------------------------GCGGCGGCAGCA------------------------G----------C-AGC.................................................................................................................................................................................................	19	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSim2

GGCAGC----GGTGG-----C---------AACA--------------------------------------------------------------------------------------------------------------GCAACAACAAC---------------TACCACTCAAT----------------------C---AGCAACATCTGCAACATCGACA---------------------GCGGCAACA----------------------T------------CG-----------------------------GCGACAGCAGCA------------------------G----------C-AGCTAGGAATGGCCAGCGACGTCGCG----------------------------------------------TGGCAGCAGCAACAG--------A---------------------A--------------------GGCT-------------------GCAACAGCAACATCG--GCAACAGCAA-C-----A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGCGACGTCGC...........................................................................................................................................................................	15	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG--------A---------------------A--------------------GGC.......................................................	16	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG--------A---------------------A--------------------GGCT-------------------...................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCGACGTCGCG----------------------------------------------A...........................................................................................................................	16	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

GTAC--------------GAGG------CCGAGGTGG-AC-------------------------------GATGAGGGAAACGCGCTGC---A-------------------C-------------AG-G---AGCAG---------------------C---------------AT----------------------CAGC------------------------A---------------------GT-------TGCAGCAGCAGC---------------------------------A---G---CAGCA--------GCAGCAGT---------------AG---CAG-------CAACAGCATCA--------------------------G---------------------------------------------------CTG--------------CA---------------GCTGCAGCAGC------------GATGGCAGCAACT--------------CCACCG----CATC--GCAGCCTCTG-T-----C	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................C---------------------------------A---G---CAGCA--------GCAGCAGT---------------AG---C........................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................................CAGC---------------------------------A---G---CAGCA--------GCAGCAGT---------------AG---C........................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0

droYak3

GACGACAACAATAAGC--------------AAGCAGG----------------------------------------AGCAGC----------------------------------AG-----------C---AGCA------GCAGCAGCAAC---------------AGCAGCAT----------------------CAGC---AGCAGCAGCAGCAGCAACAACA---------------------GCAGCAAC-------A---------------G------------C-----------------------------AGCAACAGCAGCAACAACA------G---CA-------GCAA--------------------------------------------------------------------------------------CAG--------------CA---------------GCAGCAACAGC------------AGCAGCA-------------------GCAACAACAGCAGCA--GCAACATCAG-C-----A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGC------------AGCAGCA-------------------GCAACAACAGC........................	27	20	1.20	24	0	0	0	0	0	0	0	0	0	0	24
......................................................................................................................................AGCA------GCAGCAGCAAC---------------AGCAGCAT----------------------..................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................CAGC----------------------------------AG-----------C---AGCA------GCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................G---CA-------GCAA--------------------------------------------------------------------------------------CAG--------------CA---------------GCAGCAACAGC------------AGC..........................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA-------------------GCAACAACAGCAGCA--..................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AGCAGCAT----------------------CAGC---AGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...............................AGCAGG----------------------------------------AGCAGC----------------------------------AG-----------C---AGCA------GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CAAC---------------AGCAGCAT----------------------CAGC---AGCAGCA....................................................................................................................................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA--GCAACATCAG-C-----A	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................A---------------G------------C-----------------------------AGCAACAGCAGCAACAACA------G---CA-------GC..............................................................................................................................................................................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCAACAACA------G---CA-------GCAA--------------------------------------------------------------------------------------CAG--------------CA---------------GCAGCA..............................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAGCAAC-------A---------------G------------C-----------------------------AGCAACAGCA............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................GCAAC---------------AGCAGCAT----------------------CAGC---A..........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGC------------AGCAGCA-------------------GCAACA.............................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................AGG----------------------------------------AGCAGC----------------------------------AG-----------C---AGCA------GCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGC------------AGCAGCA-------------------GCAACAA............................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................AG-----------C---AGCA------GCAGCAGCAAC---------------AGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CAGCAGCAGCAGCAACAACA---------------------GCAGC...........................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................AAC-------A---------------G------------C-----------------------------AGCAACAGCAGC..........................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................AT----------------------CAGC---AGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------AGCAGCA-------------------GCAACAACAGCAG......................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................T----------------------CAGC---AGCAGCAGCAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------GCAACAACAGCAGCA--GC................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GTCGAC------------GTCG------TCAACACGA----------GC----CGACACGACAGCAG----------------------------------------------CAGCAG-------CAG-C---------------------AGC---------------AGCAGCAG----------------------CAGC---AGCAGCAGCAACAGC----------------------------------------AGCAGCAGCAGCAGCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCAGCA-G--------------------------------------------------------------------------------------CAGCAGCAGCAG--------AA------GCAGCAGCAGCAGCAGCAG------------CAGCAGCA-------------------ACATC--------AG--GCAACGGCAG-C-----A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................GCAGCAACAGC----------------------------------------AGCAGCAGC...........................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0
..................................................................................................................................................................................................................AGCAGCAACAGC----------------------------------------AGCAGCAGC...........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GCAGCA---------------------------A-----------CAGCAGCAGCAA---------------CA-GCA--GCAGC..................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCAA---------------CA-GCA--GCAGCA-G--------------------------------------------------------------------------------------CAG......................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................C---AGCAGCAGCAACAGC----------------------------------------AGC.................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG--------AA------GCAGCA.......................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------AA------GCAGCAGCAGCAGCAGC............................................................................	20	20	0.05	1	0	1	0	0	0	0	0

dgr_267

scaffold_15081:3236905-3236979 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.5	-24.0	-23.9